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GITHUB
|
adminer |
Database management in a single PHP file. |
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GITHUB
|
amazon/aws-cli |
The AWS Command Line Interface (AWS CLI) is a unified tool to manage your AWS services. |
aws, aws_completer |
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GITHUB
|
amdih/cp2k |
CP2K is a quantum chemistry and solid state physics software package that can perform atomistic simulations of solid state, liquid, molecular, periodic, material, crystal, and biological systems. |
cp2k.popt, cp2k.psmp.dbcsr_gpu, cp2k_shell.psmp, graph.psmp, grid_unittest.psmp, memory_utilities_unittest.psmp, xyz2dcd.psmp, cp2k.psmp, cp2k.psmp.no_dbcsr_gpu, dumpdcd.psmp, grid_miniapp.psmp, libcp2k_unittest.psmp, parallel_rng_types_unittest.psmp |
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GITHUB
|
amdih/gromacs |
GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. |
gmx |
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GITHUB
|
amdih/lammps |
LAMMPS is a classical molecular dynamics code with a focus on materials modeling. It's an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. |
lmp |
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GITHUB
|
amdih/namd |
NAMD is a molecular dynamics package designed for simulating the movement of biomolecules over time. |
charmrun, namd2 |
|
GITHUB
|
amdih/namd3 |
NAMD is a molecular dynamics package designed for simulating the movement of biomolecules over time. |
charmrun, namd3 |
|
GITHUB
|
amdih/pytorch |
PyTorch is a GPU accelerated tensor computational framework with a Python front end. |
python3, python |
|
GITHUB
|
bids/aa |
BIDS App containing an instance of the Automatic Analysis. (https://github.com/BIDS-Apps/aa) |
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GITHUB
|
bids/baracus |
Brain-Age Regression Analysis and Computation Utility Software (https://github.com/BIDS-Apps/baracus) |
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GITHUB
|
bids/brainiak-srm |
Shared Response Model (SRM) from the Brain Imaging Analysis Kit (BrainIAK) (https://github.com/BIDS-Apps/brainiak-srm) |
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GITHUB
|
bids/brainsautoworkup |
A BIDS App for running BRAINSAutoWorkup (https://github.com/BIDS-Apps/BRAINSAutoworkup) |
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GITHUB
|
bids/broccoli |
BROCCOLI is a software for analysis of fMRI (functional magnetic resonance imaging) data and is written in OpenCL (Open Computing Language). (https://github.com/BIDS-Apps/BROCCOLI) |
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GITHUB
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bids/freesurfer |
Surface reconstruction using Freesurfer |
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GITHUB
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bids/hcppipelines |
BIDS-ified HPC Piplines to process MRI data for the Human Connectome Project (https://github.com/BIDS-Apps/HCPPipelines) |
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GITHUB
|
bids/matlab-compiler-runtime |
Base image with Matlab compiler runtime (https://github.com/BIDS-Apps/matlab-compiler-runtime) |
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GITHUB
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bids/mrtrix3_connectome |
Generation and subsequent group analysis of structural connectomes generated from diffusion MRI data (via the MRtrix3 software package). https://github.com/BIDS-Apps/MRtrix3_connectome |
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GITHUB
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bids/niak |
The neuroimaging analysis kit. Pipeline for preprocessing of fMRI and structural MRI scans http://niak.simexp-lab.org/ (https://github.com/BIDS-Apps/niak) |
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GITHUB
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bids/pymvpa |
Take fMRI data and generates ROI based MultiVariate Pattern Analysis (MVPA) outputs (https://github.com/BIDS-Apps/PyMVPA) |
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GITHUB
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bids/rshrf |
Resting state HRF estimation and deconvolution (https://github.com/BIDS-Apps/rsHRF) |
rsHRF |
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GITHUB
|
bids/spm |
The implementation of the theoretical concepts of Statistical Parametric Mapping in a complete analysis package. |
spm12 |
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GITHUB
|
bids/tracula |
Implements Freesurfer's TRACULA (TRActs Constrained by UnderLying Anatomy) tool for cross-sectional as well as longitudinal (multi session) input data (https://github.com/BIDS-Apps/tracula) |
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GITHUB
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bids/validator |
A validator for BIDS (Brain Imaging Data Structure) datasets. |
bids-validator |
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GITHUB
|
couchdb |
CouchDB is a database that uses JSON for documents, an HTTP API, & JavaScript/declarative indexing. |
couchdb, couchdb.cmd, couchjs, remsh |
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GITHUB
|
elasticsearch |
Elasticsearch is a powerful open source search and analytics engine that makes data easy to explore. |
elasticsearch, elasticsearch-certgen, elasticsearch-certutil, elasticsearch-cli, elasticsearch-croneval, elasticsearch-env, elasticsearch-env-from-file, elasticsearch-keystore, elasticsearch-migrate, elasticsearch-node, elasticsearch-plugin, elasticsearch-saml-metadata, elasticsearch-setup-passwords, elasticsearch-shard, elasticsearch-sql-cli, elasticsearch-sql-cli-7.12.0.jar, elasticsearch-syskeygen, elasticsearch-users |
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GITHUB
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ghcr.io/autamus/abi-dumper |
ABI Dumper is a tool for dumping ABI information of an ELF object containing DWARF debug info. |
abi-dumper |
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GITHUB
|
ghcr.io/autamus/abyss |
ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. |
abyss-align, abyss-bloom, abyss-bloom-dbg, abyss-bloom-dist.mk, abyss-bowtie, abyss-bowtie2, abyss-bwa, abyss-bwamem, abyss-bwasw, abyss-db-csv, abyss-db-txt, abyss-dida, abyss-fac, abyss-fatoagp, abyss-filtergraph, abyss-fixmate, abyss-fixmate-ssq, abyss-gapfill, abyss-gc, abyss-index, abyss-junction, abyss-kaligner, abyss-layout, abyss-longseqdist, abyss-map, abyss-map-ssq, abyss-mergepairs, abyss-overlap, abyss-paired-dbg, abyss-paired-dbg-mpi, abyss-pe, abyss-samtoafg, abyss-scaffold, abyss-sealer, abyss-stack-size, abyss-tabtomd, abyss-todot, abyss-tofastq |
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GITHUB
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ghcr.io/autamus/accumulo |
Apache Accumulo is a sorted, distributed key/value store that provides robust, scalable data storage and retrieval. |
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GITHUB
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ghcr.io/autamus/addrwatch |
addrwatch is a similar software to arpwatch. It main purpose is to monitor network and log ethernet/ip pairings. |
addrwatch, addrwatch_stdout, addrwatch_syslog |
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GITHUB
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ghcr.io/autamus/adios |
The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation. |
adios_config, adios_lint, adios_list_methods, adios_list_methods_nompi, adios_list_methods_readonly, adios_list_methods_readonly_nompi |
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GITHUB
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ghcr.io/autamus/adios2 |
The Adaptable Input Output System version 2, developed in the Exascale Computing Program |
adios2-config, adios2_deactivate_bp, adios2_iotest, adios2_reorganize, adios2_reorganize_mpi |
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GITHUB
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ghcr.io/autamus/admixtools |
ADMIXTOOLS is a collection of programs which use genetic data to infer how populations are related to one another. |
convertf, dowtjack, expfit.sh, gcount, grabpars, gsl-config, gsl-histogram, gsl-randist, jackdiff, kimf, mergeit, mkpretty, qp3Pop, qp4diff, qpAdm, qpBound, qpDpart, qpDstat, qpF4ratio, qpGraph, qpWave, qpdslow, qpff3base, qpfmv, qpfstats, qpreroot, rexpfit.r, rolloff, rolloffp, simpjack2, twtable, wtjack.pl |
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GITHUB
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ghcr.io/autamus/advancecomp |
AdvanceCOMP is a set of cross-platform command line data (re-)compression tools. |
advdef, advmng, advpng, advzip |
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GITHUB
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ghcr.io/autamus/alan |
A simple in-terminal alignment viewer. |
alan |
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GITHUB
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ghcr.io/autamus/alps |
Algorithms and Libraries for Physics Simulations. |
alpspython |
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GITHUB
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ghcr.io/autamus/amrex |
AMReX is a publicly available software framework designed for building massively parallel block- structured adaptive mesh refinement (AMR) applications. |
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GITHUB
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ghcr.io/autamus/angsd |
ANGSD is a software for analyzing next generation sequencing data. |
angsd |
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GITHUB
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ghcr.io/autamus/arborx |
ArborX is a performance-portable library for geometric search |
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GITHUB
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ghcr.io/autamus/argobots |
A lightweight runtime system that supports integrated computation and data movement with massive concurrency. |
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GITHUB
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ghcr.io/autamus/aria2 |
aria2 is a lightweight multi-protocol & multi-source command-line download utility. |
aria2c |
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GITHUB
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ghcr.io/autamus/ascent |
An open source many-core capable lightweight in situ visualization and analysis infrastructure for multi-physics HPC simulations. |
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GITHUB
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ghcr.io/autamus/astral |
ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees. |
astral |
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GITHUB
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ghcr.io/autamus/bart |
BART: Toolbox for Computational Magnetic Resonance Imaging |
bart, bartview |
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GITHUB
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ghcr.io/autamus/bbmap |
A suite of fast, multithreaded bioinformatics tools designed for analysis of DNA and RNA sequence data. |
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GITHUB
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ghcr.io/autamus/bcftools |
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. |
bcftools |
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GITHUB
|
ghcr.io/autamus/beast2 |
BEAST 2 is a cross-platform program for Bayesian phylogenetic analysis of molecular sequences. |
beast, beasti, beauti, densitree, treeannotator |
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GITHUB
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ghcr.io/autamus/bedops |
BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. |
bam2bed, bam2bed_gnuParallel, bam2bed_sge, bam2bed_slurm, bam2starch, bam2starch_gnuParallel, bam2starch_sge, bam2starch_slurm, bedextract, bedmap, bedops, closest-features, convert2bed, gff2bed, gff2starch, gtf2bed, gtf2starch, gvf2bed, gvf2starch, psl2bed, psl2starch, rmsk2bed, rmsk2starch, sam2bed, sam2starch, sort-bed, starch, starch-diff, starchcat, starchcluster_gnuParallel, starchcluster_sge, starchcluster_slurm, starchstrip, unstarch, update-sort-bed-migrate-candidates, update-sort-bed-slurm, update-sort-bed-starch-slurm, vcf2bed, vcf2starch, wig2bed, wig2starch |
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GITHUB
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ghcr.io/autamus/bedtools2 |
The swiss army knife for genome arithmetic |
annotateBed, bamToBed, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, fastaFromBed, flankBed, genomeCoverageBed, intersectBed, linksBed, mapBed, maskFastaFromBed, mergeBed, multiIntersectBed, nucBed, pairToBed, randomBed, shiftBed, shuffleBed, slopBed, sortBed, subtractBed, unionBedGraphs, windowBed |
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GITHUB
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ghcr.io/autamus/bismark |
Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step. |
bismark, bismark_genome_preparation, bismark_methylation_extractor, bismark2bedGraph, bismark2report, bismark2summary |
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GITHUB
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ghcr.io/autamus/bolt |
BOLT targets a high-performing OpenMP implementation, especially specialized for fine-grain parallelism. |
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GITHUB
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ghcr.io/autamus/boost |
The Boost project provides free peer-reviewed portable C++ source libraries. |
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GITHUB
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ghcr.io/autamus/bowtie2 |
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. |
bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s |
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GITHUB
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ghcr.io/autamus/bracken |
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample. |
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GITHUB
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ghcr.io/autamus/bwa |
BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. |
bwa |
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GITHUB
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ghcr.io/autamus/cabana |
The Exascale Co-Design Center for Particle Applications Toolkit |
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GITHUB
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ghcr.io/autamus/caliper |
Caliper is a program instrumentation and performance measurement framework. |
cali-query, cali-stat |
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GITHUB
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ghcr.io/autamus/cantera |
Cantera is an open-source collection of object-oriented software tools for problems involving chemical kinetics, thermodynamics, and transport processes. |
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GITHUB
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ghcr.io/autamus/cctools |
The Cooperative Computing Tools (CCTools) are a collection of programs that enable large scale distributed computing on systems such as clusters, clouds, and grids. |
c_rehash, captoinfo, catalog_query, catalog_server, catalog_update, ccache-swig, cctools_gpu_autodetect, chirp, chirp_audit_cluster, chirp_benchmark, chirp_distribute, chirp_fuse, chirp_get, chirp_put, chirp_server, chirp_server_hdfs, chirp_status, chirp_stream_files, chroot_package_run, clear, condor_submit_makeflow, condor_submit_workers, confuga_adm, corelist, cpan, cpanm |
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GITHUB
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ghcr.io/autamus/cdo |
CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data. |
cdo |
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GITHUB
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ghcr.io/autamus/cfitsio |
CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format. |
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GITHUB
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ghcr.io/autamus/circos |
Circos is a software package for visualizing data and information. |
circos |
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GITHUB
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ghcr.io/autamus/clhep |
CLHEP is a C++ library that provides utility classes for general numerical programming, vector arithmetic, geometry, pseudorandom number generation, and linear algebra, specifically targeted for high energy physics simulation and analysis software. |
Cast-config, Evaluator-config, Exceptions-config, GenericFunctions-config, Geometry-config, Matrix-config, Random-config, RandomObjects-config, RefCount-config, Units-config, Utility-config, Vector-config, clhep-config |
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GITHUB
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ghcr.io/autamus/clingo |
An ASP system to ground and solve logic programs. |
clingo, gringo |
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GITHUB
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ghcr.io/autamus/cloc |
cloc is a command line program that takes file, directory, and/or archive names as inputs. |
cloc |
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GITHUB
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ghcr.io/autamus/conduit |
Conduit is an open source project from Lawrence Livermore National Laboratory that provides an intuitive model for describing hierarchical scientific data in C++, C, Fortran, and Python. |
conduit_blueprint_verify, conduit_relay_entangle.py, conduit_relay_io_convert, conduit_relay_io_ls, conduit_relay_node_viewer, conduit_staging, conduit_staging.sh |
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GITHUB
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ghcr.io/autamus/corset |
Corset is a command-line program to go from a de novo transcriptome assembly to gene-level counts. |
corset, corset_fasta_ID_changer |
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GITHUB
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ghcr.io/autamus/cowsay |
What does the cow say? |
cowsay |
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GITHUB
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ghcr.io/autamus/cufflinks |
Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. |
cuffcompare, cuffdiff, cufflinks, cuffmerge, cuffnorm, cuffquant |
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GITHUB
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ghcr.io/autamus/curl |
cURL is a computer software project providing a library and command-line tool for transferring data using various network protocols. The name stands for 'Client URL', which was first released in 1997. |
c_rehash, curl, curl-config |
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GITHUB
|
ghcr.io/autamus/dakota |
The Dakota project delivers both state-of-the-art research and robust, usable software for optimization and UQ. Broadly, the Dakota software's advanced parametric analyses enable design exploration, model calibration, risk analysis, and quantification of margins and uncertainty with computational models. |
dakota, dakota_library_mode, dakota_library_split, dakota_order_input, dakota_restart_util |
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GITHUB
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ghcr.io/autamus/datatransferkit |
DataTransferKit is an open-source software library of parallel solution transfer services for multiphysics simulations |
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GITHUB
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ghcr.io/autamus/diamond |
A sequence aligner for protein and translated DNA searches, designed for high performance analysis of big sequence data. |
diamond |
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GITHUB
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ghcr.io/autamus/dyninst |
DyninstAPI - Tools for binary instrumentation, analysis, and modification. |
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GITHUB
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ghcr.io/autamus/eagle |
Explicit Alternative Genome Likelihood Evaluator |
eagle, eagle-nm, eagle-rc |
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GITHUB
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ghcr.io/autamus/ed |
GNU ed is a line-oriented text editor used to create, display, modify and otherwise manipulate text files, both interactively and via shell scripts https://www.gnu.org/software/ed. |
ed, red |
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GITHUB
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ghcr.io/autamus/emacs |
The Emacs programmable text editor. https://www.gnu.org/software/emacs |
ebrowse, emacs, emacsclient, etags |
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GITHUB
|
ghcr.io/autamus/faodel |
Flexible, Asynchronous, Object Data-Exchange Libraries |
faodel |
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GITHUB
|
ghcr.io/autamus/fastqc |
A quality control tool for high throughput sequence data. |
fastqc |
|
GITHUB
|
ghcr.io/autamus/ffmpeg |
FFmpeg is a free and open-source software project consisting of a large suite of libraries and programs for handling video, audio, and other multimedia files and streams. |
ffmpeg, ffprobe |
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GITHUB
|
ghcr.io/autamus/flit |
Floating-point Litmus Tests (FLiT) is a C++ test infrastructure for detecting variability in floating-point code caused by variations in compiler code generation, hardware and execution environments. |
flit |
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GITHUB
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ghcr.io/autamus/fraggenescan |
An application for finding (fragmented) genes in short reads. |
|
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GITHUB
|
ghcr.io/autamus/gasnet |
GASNet is a language-independent, networking middleware layer that provides network-independent, high-performance communication primitives including Remote Memory Access (RMA) and Active Messages (AM). |
gasnet_trace, gasnet_trace.pl |
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GITHUB
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ghcr.io/autamus/gatk |
GATK (pronounced 'Gee-ay-tee-kay', not 'Gat-kay'), stands for GenomeAnalysisToolkit. It is a collection of command-line tools for analyzing high-throughput sequencing data with a primary focus on variant discovery. |
gatk |
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GITHUB
|
ghcr.io/autamus/gawk |
gawk is the GNU implementation of awk. The awk utility interprets a special-purpose programming language that makes it possible to handle simple data-reformatting jobs with just a few lines of code. https://www.gnu.org/software/gawk/ |
gawk |
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GITHUB
|
ghcr.io/autamus/gcc |
The GNU Compiler Collection |
c++, cpp, g++, gcc, gcc-ar, gcc-nm, gcc-ranlib, gcov, gcov-dump, gcov-tool, gfortran, zstd |
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GITHUB
|
ghcr.io/autamus/gdal |
GDAL is a translator library for raster and vector geospatial data formats that is released under an X/MIT style Open Source License by the Open Source Geospatial Foundation. |
gdal-config, gdal_contour, gdal_create, gdal_grid, gdal_rasterize, gdal_translate, gdal_viewshed, gdaladdo, gdalbuildvrt, gdaldem, gdalenhance, gdalinfo, gdallocationinfo, gdalmanage, gdalmdiminfo, gdalmdimtranslate, gdalsrsinfo, gdaltindex, gdaltransform, gdalwarp |
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GITHUB
|
ghcr.io/autamus/geant4 |
Geant4 is a platform for the simulation of the passage of particles through matter using Monte Carlo methods. |
Cast-config, CreateDOMDocument, DOMCount, DOMPrint, EnumVal, Evaluator-config, Exceptions-config, GenericFunctions-config, Geometry-config, Matrix-config, MemParse, PParse, PSVIWriter, Random-config, RandomObjects-config, Redirect, RefCount-config, SAX2Count, SAX2Print, SAXCount, SAXPrint, SCMPrint, SEnumVal, StdInParse, Units-config, Utility-config, Vector-config, XInclude, geant4-config, geant4.csh, geant4.sh |
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GITHUB
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ghcr.io/autamus/geos |
GEOS is a C++11 library for performing operations on two-dimensional vector geometries. |
geos-config |
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GITHUB
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ghcr.io/autamus/ginkgo |
High-performance linear algebra library for manycore systems, with a focus on sparse solution of linear systems. |
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GITHUB
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ghcr.io/autamus/git |
Git is software for tracking changes in any set of files, usually used for coordinating work among programmers collaboratively developing source code during software development. Its goals include speed, data integrity, and support for distributed, non-linear workflows. |
git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack |
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GITHUB
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ghcr.io/autamus/glpk |
The GLPK package is a set of routines written in ANSI C and organized in the form of a callable library. This package is intended for solving large-scale linear programming (LP), mixed integer linear programming (MIP), and other related problems. |
glpsol |
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GITHUB
|
ghcr.io/autamus/gmp |
GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating-point numbers. |
curl |
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GITHUB
|
ghcr.io/autamus/gnuplot |
Gnuplot is a portable command-line driven graphing utility for Linux, OS/2, MS Windows, OSX, VMS, and many other platforms. |
gnuplot |
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GITHUB
|
ghcr.io/autamus/gotcha |
C software library for shared library function wrapping, enables tools to intercept calls into shared libraries |
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GITHUB
|
ghcr.io/autamus/graphviz |
Graphviz is open source graph visualization software. |
gc, gml2gv, graphml2gv, gv2gml, gv2gxl, gvcolor, gvgen, gvmap, gvmap.sh, gvpack, gvpr, gxl2dot, gxl2gv |
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GITHUB
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ghcr.io/autamus/grass |
GRASS GIS (https://grass.osgeo.org/) is a Geographic Information System used for geospatial data management and analysis, image processing, graphics/map production, spatial modeling, and visualization. |
grass78 |
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GITHUB
|
ghcr.io/autamus/gromacs |
A versatile package to perform molecular dynamics. |
|
|
GITHUB
|
ghcr.io/autamus/gsl |
The GNU Scientific Library. |
gsl-config, gsl-histogram, gsl-randist |
|
GITHUB
|
ghcr.io/autamus/hdf5 |
HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections. |
h5clear, h5copy, h5debug, h5diff, h5dump, h5format_convert, h5import, h5jam, h5ls, h5mkgrp, h5pcc, h5perf, h5perf_serial, h5redeploy, h5repack, h5repart, h5stat, h5unjam |
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GITHUB
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ghcr.io/autamus/heaptrack |
Heaptrack traces all memory allocations and annotates these events with stack traces. |
heaptrack, heaptrack_print |
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GITHUB
|
ghcr.io/autamus/hisat2 |
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes as well as to a single reference genome. |
hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, hisatgenotype.py, hisatgenotype_build_genome.py, hisatgenotype_extract_reads.py, hisatgenotype_extract_vars.py, hisatgenotype_hla_cyp.py, hisatgenotype_locus.py |
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GITHUB
|
ghcr.io/autamus/hmmer |
HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. |
hmmalign, hmmbuild, hmmconvert, hmmemit, hmmfetch, hmmlogo, hmmpgmd, hmmpgmd_shard, hmmpress, hmmscan, hmmsearch, hmmsim, hmmstat |
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GITHUB
|
ghcr.io/autamus/hpctoolkit |
HPCToolkit is an integrated suite of tools for measurement and analysis of program performance on computers ranging from multicore desktop systems to the nation's largest supercomputers. |
hello, hpclink, hpcprof, hpcrun, hpcstruct, hpcviewer |
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GITHUB
|
ghcr.io/autamus/hpx |
C++ runtime system for parallel and distributed applications. |
hpxcxx, hpxrun.py |
|
GITHUB
|
ghcr.io/autamus/htop |
htop is an interactive text-mode process viewer for Unix systems. https://github.com/hishamhm/htop |
htop |
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GITHUB
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ghcr.io/autamus/htslib |
A C library for reading/writing high-throughput sequencing data. |
htsfile |
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GITHUB
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ghcr.io/autamus/hypre |
A library of high performance preconditioners and solvers featuring multigrid methods for the solution of large, sparse linear systems of equations on massively parallel computers. |
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GITHUB
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ghcr.io/autamus/igraph |
igraph is a library collection for creating and manipulating graphs and analyzing networks. It is written in C and also exists as Python and R packages. |
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GITHUB
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ghcr.io/autamus/intel-mkl |
Intel oneAPI Math Kernel Library, formerly just Intel Math Kernel Library, is a library of optimized math routines for science, engineering, and financial applications. |
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GITHUB
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ghcr.io/autamus/ior |
IOR is a parallel IO benchmark that can be used to test the performance of parallel storage systems using various interfaces and access patterns. |
ior |
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GITHUB
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ghcr.io/autamus/iq-tree |
IQ-TREE (http://www.iqtree.org, last accessed February 6, 2020) is a user-friendly and widely used software package for phylogenetic inference using maximum likelihood. |
iq-tree2 |
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GITHUB
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ghcr.io/autamus/jags |
Just Another Gibbs Sampler. A program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation. |
jags |
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GITHUB
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ghcr.io/autamus/jasper |
JasPer is a collection of software (i.e., a library and application programs) for the coding and manipulation of images. |
jasper, jpegtran |
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GITHUB
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ghcr.io/autamus/julia |
Julia is a high-level, high-performance, dynamic programming language. |
julia |
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GITHUB
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ghcr.io/autamus/kallisto |
kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. |
kallisto |
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GITHUB
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ghcr.io/autamus/kraken2 |
Kraken 2 is the newest version of Kraken, a taxonomic classification system using exact k-mer matches to achieve high accuracy and fast classification speeds. |
kraken2, kraken2-build, kraken2-inspect, kraken2lib.pm |
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GITHUB
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ghcr.io/autamus/lammps |
LAMMPS is a classical molecular dynamics code with a focus on materials modeling. |
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GITHUB
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ghcr.io/autamus/legion |
Legion is a data-centric parallel programming system for writing portable high performance programs targeted at distributed heterogeneous architectures. |
legion_prof.py, legion_serializer.py, legion_spy.py |
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GITHUB
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ghcr.io/autamus/libnrm |
Libnrm, the application instrumentation library for the Node Resource Manager(NRM). |
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GITHUB
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ghcr.io/autamus/libpng |
libpng is the official PNG reference library. |
libpng-config, libpng16-config, png-fix-itxt, pngfix |
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GITHUB
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ghcr.io/autamus/libquo |
QUO (as in status quo) is a runtime library that aids in accommodating thread-level heterogeneity in dynamic, phased MPI+X applications comprising single- and multi-threaded libraries. |
quo-info |
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GITHUB
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ghcr.io/autamus/libtiff |
Libtiff is a library for reading and writing Tagged Image File Format (abbreviated TIFF) files. |
fax2tiff, ppm2tiff, raw2tiff, tiff2bw, tiff2pdf, tiff2ps, tiff2rgba, tiffcmp, tiffcp, tiffcrop, tiffdither, tiffdump, tiffinfo, tiffmedian, tiffset, tiffsplit |
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GITHUB
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ghcr.io/autamus/libunwind |
A portable and efficient C programming interface (API) to determine the call-chain of a program. |
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GITHUB
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ghcr.io/autamus/libxpm |
The X PixMap image format is an extension of the monochrome X BitMap format specified in the X protocol, and is commonly used in traditional X applications. |
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GITHUB
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ghcr.io/autamus/lmod |
The Persistence of Vision Ray Tracer, most commonly acronymed as POV-Ray, is a cross-platform ray-tracing program that generates images from a text-based scene description. |
module |
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GITHUB
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ghcr.io/autamus/loki |
Loki is a C++ library of designs, containing flexible implementations of common design patterns and idioms. |
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GITHUB
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ghcr.io/autamus/lp-solve |
Lp_solve is freely available (under LGPL 2) software for solving linear, integer and mixed integer programs. |
lp_solve |
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GITHUB
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ghcr.io/autamus/mafft |
MAFFT is a multiple sequence alignment program for unix-like operating systems. |
mafft, mafft-distance, mafft-einsi, mafft-fftns, mafft-fftnsi, mafft-ginsi, mafft-linsi, mafft-nwns, mafft-nwnsi, mafft-profile, mafft-qinsi, mafft-xinsi |
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GITHUB
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ghcr.io/autamus/meme |
The MEME suite provides online tools for discovering and using protein and DNA sequence motifs. |
meme, meme-chip, memhog |
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GITHUB
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ghcr.io/autamus/mercurial |
Mercurial is a distributed revision control tool for software developers. |
hg |
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GITHUB
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ghcr.io/autamus/mercury |
Mercury is a C library for implementing RPC, optimized for HPC |
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GITHUB
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ghcr.io/autamus/metall |
A Persistent Memory Allocator For Data-Centric Analytics |
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GITHUB
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ghcr.io/autamus/migrate |
Migrate estimates effective population sizes and past migration rates between n population assuming a migration matrix model with asymmetric migration rates and different subpopulation sizes |
migrate-n |
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GITHUB
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ghcr.io/autamus/mothur |
A single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community. |
mothur |
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GITHUB
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ghcr.io/autamus/mpc |
mithi/mpc: A software pipeline using the Model Predictive Control method to drive a car around a virtual track. |
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GITHUB
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ghcr.io/autamus/mpfr |
The MPFR library is a C library for multiple-precision floating-point computations with correct rounding. |
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GITHUB
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ghcr.io/autamus/mummer |
MUMmer is a system for rapidly aligning entire genomes. |
mummer, mummerplot |
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GITHUB
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ghcr.io/autamus/muscle |
Multiple Sequence Alignment. |
muscle |
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GITHUB
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ghcr.io/autamus/nco |
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nc-config, ncap2, ncatted, ncbo, ncclimo, nccopy, ncdiff, ncdump, ncea, ncecat, nces, ncflint, ncgen, ncgen3, ncks, ncpdq, ncra, ncrcat, ncremap, ncrename, ncurses6-config, ncursesw6-config, ncwa |
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GITHUB
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ghcr.io/autamus/ninja |
Ninja is a small build system with a focus on speed. |
ninja, ninja-build |
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GITHUB
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ghcr.io/autamus/node-js |
A JavaScript runtime built on Chrome's V8 JavaScript engine. |
node |
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GITHUB
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ghcr.io/autamus/octave |
GNU Octave is a high-level interpreted language, primarily intended for numerical computations (like an open source Matlab) |
octave, octave-6.2.0, octave-cli, octave-cli-6.2.0, octave-config, octave-config-6.2.0 |
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GITHUB
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ghcr.io/autamus/omega-h |
Omega_h is a C++11 library providing data structures and algorithms for adaptive discretizations. |
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GITHUB
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ghcr.io/autamus/openbabel |
Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas. |
obabel, obconformer, obdistgen, obenergy, obfit, obfitall, obgen, obgrep, obminimize, obmm, obprobe, obprop, obrms, obrotamer, obrotate, obspectrophore, obsym, obtautomer, obthermo |
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GITHUB
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ghcr.io/autamus/opencv |
OpenCV is a library of programming functions mainly aimed at real-time computer vision. Originally developed by Intel, it was later supported by Willow Garage then Itseez. |
opencv_version, setup_vars_opencv4.sh |
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GITHUB
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ghcr.io/autamus/openjdk |
Open Java Development Kit |
jaotc, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jdeps, jfr, jhsdb, jimage, jinfo, jjs, jlink, jmap, jmod, jps, jrunscript, jshell, jstack, jstat, jstatd |
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GITHUB
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ghcr.io/autamus/openmpi |
An open source Message Passing Interface implementation. |
mpiCC, mpic++, mpicc, mpicxx, mpiexec, mpif77, mpif90, mpifort, mpirun, ompi-clean, ompi-server, ompi_info |
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GITHUB
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ghcr.io/autamus/pandaseq |
A program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. |
pandaseq, pandaseq-checkid, pandaseq-diff, pandaseq-hang, pandaxs |
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GITHUB
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ghcr.io/autamus/papi |
Performance Application Programming Interface. |
papi_avail, papi_clockres, papi_command_line, papi_component_avail, papi_cost, papi_decode, papi_error_codes, papi_event_chooser, papi_hl_output_writer.py, papi_mem_info, papi_multiplex_cost, papi_native_avail, papi_version, papi_xml_event_info |
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GITHUB
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ghcr.io/autamus/papyrus |
Parallel Aggregate Persistent Storage |
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GITHUB
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ghcr.io/autamus/parallel-netcdf |
PnetCDF (Parallel netCDF) is a high-performance parallel I/O library for accessing files in format compatibility with Unidata's NetCDF, specifically the formats of CDF-1, 2, and 5. |
pnetcdf-config, pnetcdf_version |
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GITHUB
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ghcr.io/autamus/pdt |
Program Database Toolkit (PDT) is a framework for analyzing source code written in several programming languages and for making rich program knowledge accessible to developers of static and dynamic analysis tools. |
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GITHUB
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ghcr.io/autamus/perl |
The Perl programming language. |
perl, perlbug, perldoc, perlivp, perlthanks |
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GITHUB
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ghcr.io/autamus/petsc |
PETSc is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations. |
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GITHUB
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ghcr.io/autamus/phist |
The Pipelined, Hybrid-parallel Iterative Solver Toolkit provides implementations of and interfaces to block iterative solvers for sparse linear and eigenvalue problems. |
phist_Danasazi_krylov_schur, phist_Danasazi_lobpcg, phist_Dbelos_bgmres, phist_Dbelos_bpcg, phist_Dblockedbicgstab, phist_Dblockedgmres, phist_Dblockedpcg, phist_Dsimple_lanczos, phist_Dsubspacejada, phist_carp_cg |
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GITHUB
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ghcr.io/autamus/picard |
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. |
picard, picard.jar |
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GITHUB
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ghcr.io/autamus/plasma |
Parallel Linear Algebra Software for Multicore Architectures, PLASMA is a software package for solving problems in dense linear algebra using multicore processors and Xeon Phi coprocessors. |
plasmatest |
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GITHUB
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ghcr.io/autamus/plink |
PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. |
plink |
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GITHUB
|
ghcr.io/autamus/poppler |
Poppler is a free software utility library for rendering Portable Document Format (PDF) documents. |
pdfattach, pdfdetach, pdffonts, pdfimages, pdfinfo, pdfseparate, pdftohtml, pdftops, pdftotext, pdfunite, png-fix-itxt, pngfix |
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GITHUB
|
ghcr.io/autamus/povray |
The Persistence of Vision Ray Tracer, most commonly acronymed as POV-Ray, is a cross-platform ray-tracing program that generates images from a text-based scene description. |
povray |
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GITHUB
|
ghcr.io/autamus/precice |
preCICE (Precise Code Interaction Coupling Environment) is a coupling library for partitioned multi-physics simulations. |
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GITHUB
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ghcr.io/autamus/prodigal |
Prodigal Gene Prediction Software |
prodigal |
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GITHUB
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ghcr.io/autamus/proj |
PROJ is a generic coordinate transformation software, that transforms coordinates from one coordinate reference system (CRS) to another. |
proj, projinfo, projsync |
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GITHUB
|
ghcr.io/autamus/protobuf |
Protocol Buffers is a method of serializing structured data. It is useful in developing programs to communicate with each other over a network or for storing data. |
protoc, protoc-3.15.8.0 |
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GITHUB
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ghcr.io/autamus/pumi |
SCOREC RPI's Parallel Unstructured Mesh Infrastructure (PUMI). |
print_pumipic_partition |
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GITHUB
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ghcr.io/autamus/py-libensemble |
Library for managing ensemble-like collections of computations. |
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GITHUB
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ghcr.io/autamus/py-petsc4py |
This package provides Python bindings for the PETSc package. |
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GITHUB
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ghcr.io/autamus/python |
An interpreted, high-level and general-purpose programming language. |
pydoc3, pydoc3.8, python, python-config, python3, python3-config, python3.8, python3.8-config, python3.8-gdb.py |
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GITHUB
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ghcr.io/autamus/qhull |
Snappy (previously known as Zippy) is a fast data compression and decompression library written in C++ by Google based on ideas from LZ77 and open-sourced in 2011. |
qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox |
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GITHUB
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ghcr.io/autamus/r-seqlogo |
Sequence logos for DNA sequence alignments |
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GITHUB
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ghcr.io/autamus/r |
R is a language and environment for statistical computing and graphics. |
R |
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GITHUB
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ghcr.io/autamus/raxml |
RAxML (Randomized Axelerated Maximum Likelihood) is a popular program for phylogenetic analysis of large datasets under maximum likelihood. |
raxmlHPC, raxmlHPC-AVX, raxmlHPC-MPI, raxmlHPC-MPI-AVX, raxmlHPC-MPI-SSE3, raxmlHPC-SSE3 |
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GITHUB
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ghcr.io/autamus/rclone |
Rclone is a command line program to manage files on cloud storage. |
rclone |
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GITHUB
|
ghcr.io/autamus/rempi |
ReMPI is a record-and-replay tool for MPI applications. |
rempi, rempi_record, rempi_replay, reset |
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GITHUB
|
ghcr.io/autamus/rsync |
An open source utility that provides fast incremental file transfer. https://rsync.samba.org/ |
rsync, rsync-ssl |
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GITHUB
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ghcr.io/autamus/ruby |
An interpreted, high-level, general-purpose programming language. |
bundle, bundler, erb, gem, irb, racc, rake, rbs, rdoc, ri, ruby |
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GITHUB
|
ghcr.io/autamus/rust |
Rust is a multi-paradigm programming language designed for performance and safety, especially safe concurrency. |
cargo, cargo-clippy, cargo-fmt, clippy-driver, rust, rust-gdb, rust-gdbgui, rust-lldb, rustc, rustdoc, rustfmt |
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GITHUB
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ghcr.io/autamus/salmon |
Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data. |
salmon |
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GITHUB
|
ghcr.io/autamus/samtools |
Samtools is a suite of programs for interacting with high-throughput sequencing data. |
blast2sam.pl, bowtie2sam.pl, export2sam.pl, fasta-sanitize.pl, interpolate_sam.pl, novo2sam.pl, psl2sam.pl, sam2vcf.pl, samtools, samtools.pl, seq_cache_populate.pl, soap2sam.pl, wgsim_eval.pl, zoom2sam.pl |
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GITHUB
|
ghcr.io/autamus/scons |
SCons is an Open Source software construction tool. |
scons, scons-3.1.2, scons-3.1.2.bat, scons-configure-cache, scons-configure-cache-3.1.2, scons-time, scons-time-3.1.2, scons.bat, sconsign, sconsign-3.1.2 |
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GITHUB
|
ghcr.io/autamus/scr |
SCR caches checkpoint data in storage on the compute nodes of a Linux cluster to provide a fast, scalable checkpoint/restart capability for MPI codes. |
scancel, scontrol, scp, scr_check_node, scr_ckpt_interval.py, scr_copy, scr_crc32, scr_env, scr_flush_file, scr_get_jobstep_id, scr_glob_hosts, scr_halt, scr_halt_cntl, scr_index, scr_inspect, scr_kill_jobstep, scr_list_dir, scr_list_down_nodes, scr_log_event, scr_log_transfer, scr_nodes_file, scr_postrun, scr_prefix, scr_prerun, scr_print, scr_rebuild_partner, scr_rebuild_rs, scr_rebuild_xor, scr_retries_halt, scr_run, scr_scavenge, scr_srun, scr_test_datemanip, scr_test_runtime, scr_watchdog, scrlog.py, scrontab |
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GITHUB
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ghcr.io/autamus/siesta |
SIESTA performs electronic structure calculations and ab initio molecular dynamics simulations of molecules and solids. |
siesta |
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GITHUB
|
ghcr.io/autamus/slate |
The Software for Linear Algebra Targeting Exascale (SLATE) project is to provide fundamental dense linear algebra capabilities to the US Department of Energy and to the high-performance computing (HPC) community at large. |
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GITHUB
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ghcr.io/autamus/slepc |
Scalable Library for Eigenvalue Problem Computations. |
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GITHUB
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ghcr.io/autamus/snappy |
Snappy (previously known as Zippy) is a fast data compression and decompression library written in C++ by Google based on ideas from LZ77 and open-sourced in 2011. |
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GITHUB
|
ghcr.io/autamus/spades |
St. Petersburg genome assembler – an assembly toolkit containing various assembly pipelines. |
spades-bwa, spades-convert-bin-to-fasta, spades-core, spades-corrector-core, spades-gbuilder, spades-gmapper, spades-gsimplifier, spades-hammer, spades-ionhammer, spades-kmer-estimating, spades-kmercount, spades-read-filter, spades-truseq-scfcorrection, spades.py, spaligner |
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GITHUB
|
ghcr.io/autamus/sparsehash |
several hash-map implementations, similar in API to SGI's hash_map class, but with different performance characteristics. |
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GITHUB
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ghcr.io/autamus/sqlite |
SQLite is a relational database management system contained in a C library. |
sqlite3 |
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GITHUB
|
ghcr.io/autamus/stc |
The Swift-Turbine Compiler (STC) |
stc, swift-t |
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GITHUB
|
ghcr.io/autamus/stringtie |
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. |
stringtie |
|
GITHUB
|
ghcr.io/autamus/superlu |
SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines. |
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GITHUB
|
ghcr.io/autamus/sz |
Error-bounded Lossy Compressor for HPC Data |
sz |
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GITHUB
|
ghcr.io/autamus/tasmanian |
The Toolkit for Adaptive Stochastic Modeling and Non-Intrusive ApproximatioN is a robust library for high dimensional integration and interpolation as well as parameter calibration. https://tasmanian.ornl.gov |
tasgrid |
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GITHUB
|
ghcr.io/autamus/tau |
A portable profiling and tracing toolkit for performance analysis of parallel programs written in Fortran, C, C++, UPC, Java, Python. |
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GITHUB
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ghcr.io/autamus/tcsh |
|
tcsh |
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GITHUB
|
ghcr.io/autamus/trilinos |
The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented software framework for the solution of large-scale, complex multi-physics engineering and scientific problems. A unique design feature of Trilinos is its focus on packages. |
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GITHUB
|
ghcr.io/autamus/turbine |
Turbine is the Swift/T runtime |
turbine, turbine-pilot, turbine-read-doubles, turbine-write-doubles |
|
GITHUB
|
ghcr.io/autamus/udunits |
The UDUNITS package supports units of physical quantities. Its C library provides for arithmetic manipulation of units and for conversion of numeric values between compatible units. |
udunits2 |
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GITHUB
|
ghcr.io/autamus/umap |
Umap is a library that provides an mmap()-like interface to a simple, user-space page fault handler based on the userfaultfd Linux feature (starting with 4.3 linux kernel). |
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GITHUB
|
ghcr.io/autamus/unifyfs |
User level file system that enables applications to use node-local storage as burst buffers for shared files. |
unifyfs, unifyfs-config, unifyfsd |
|
GITHUB
|
ghcr.io/autamus/unixodbc |
unixODBC-Test containing Qt based ODBC test tool, and autotest framework. |
odbc_config, odbcinst |
|
GITHUB
|
ghcr.io/autamus/upcxx |
UPC++ is a C++ library that supports Partitioned Global Address Space (PGAS) programming, and is designed to interoperate smoothly and efficiently with MPI, OpenMP, CUDA and AMTs. |
upcxx, upcxx-meta, upcxx-run, upcxx.sh |
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GITHUB
|
ghcr.io/autamus/valgrind |
A suite of tools for debugging and profiling. |
valgrind, valgrind-di-server, valgrind-listener |
|
GITHUB
|
ghcr.io/autamus/veloc |
Very-Low Overhead Checkpointing System. VELOC is a multi-level checkpoint-restart runtime for HPC supercomputing infrastructures |
veloc-backend, veloc_check_node, veloc_env, veloc_glob_hosts, veloc_jsrun, veloc_list_down_nodes |
|
GITHUB
|
ghcr.io/autamus/wget |
GNU Wget is a free software package for retrieving files using HTTP, HTTPS, FTP and FTPS, the most widely used Internet protocols. |
wget |
|
GITHUB
|
ghcr.io/autamus/xnnpack |
High-efficiency floating-point neural network inference operators for mobile, server, and Web |
|
|
GITHUB
|
ghcr.io/autamus/xrootd |
XRootD software framework is a fully generic suite for fast, low latency and scalable data access, which can serve natively any kind of data, organized as a hierarchical filesystem-like namespace, based on the concept of directory. |
xrdacctest, xrdadler32, xrdcopy, xrdcp, xrdfs, xrdgsiproxy, xrdgsitest, xrdmapc, xrdpfc_print, xrdpinls, xrdpwdadmin, xrdsssadmin, xrootd, xrootd-config |
|
GITHUB
|
ghcr.io/autamus/xz |
XZ Utils is free general-purpose data compression software with a high compression ratio. |
xz, xzcat, xzcmp, xzdec, xzdiff, xzegrep, xzfgrep, xzgrep, xzless, xzmore |
|
GITHUB
|
ghcr.io/autamus/zfp |
zfp is a compressed number format for multidimensional floating-point and integer arrays. |
|
|
GITHUB
|
ghcr.io/autamus/zlib |
zlib is a software library used for data compression. zlib was written by Jean-loup Gailly and Mark Adler and is an abstraction of the DEFLATE compression algorithm used in their gzip file compression program. |
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GITHUB
|
ghcr.io/singularityhub/github-ci |
An example SIF on GitHub packages to pull with oras |
|
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GITHUB
|
golang |
Go (a.k.a., Golang) is a programming language first developed at Google. |
go, gofmt |
|
GITHUB
|
gradle |
Gradle is a build tool with a focus on build automation and support for multi-language development. |
gradle |
|
GITHUB
|
hashicorp/consul |
Automatic build of consul based on the current release. |
consul, docker-entrypoint.sh |
|
GITHUB
|
hashicorp/vault |
Vault is a tool for securely accessing secrets via a unified interface and tight access control. |
vault |
|
GITHUB
|
julia |
An interpreted, high-level, high-performance dynamic programming language for technical computing. |
julia |
|
GITHUB
|
jupyter/datascience-notebook |
Jupyter Datascience Notebook from https://github.com/jupyter/docker-stacks |
run-notebook |
|
GITHUB
|
jupyter/minimal-notebook |
Jupyter Minimal Notebook from https://github.com/jupyter/docker-stacks |
run-notebook |
|
GITHUB
|
jupyter/pyspark-notebook |
Jupyter Pyspark Notebook from https://github.com/jupyter/docker-stacks |
run-notebook |
|
GITHUB
|
jupyter/r-notebook |
Jupyter R Notebook from https://github.com/jupyter/docker-stacks |
run-notebook |
|
GITHUB
|
jupyter/scipy-notebook |
Jupyter Notebook Scientific Python Stack from https://github.com/jupyter/docker-stacks |
run-notebook |
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GITHUB
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jupyter/tensorflow-notebook |
Jupyter Tensorflow Notebook from https://github.com/jupyter/docker-stacks |
run-notebook |
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GITHUB
|
kibana |
Kibana gives shape to any kind of data — structured and unstructured — indexed in Elasticsearch. |
kibana, kibana-encryption-keys, kibana-keystore, kibana-plugin |
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GITHUB
|
mariadb |
MariaDB Server is one of the most popular database servers in the world. It’s made by the original developers of MySQL and guaranteed to stay open source. Notable users include Wikipedia, DBS Bank and ServiceNow. |
mariabackup, mariadb, mariadb-access, mariadb-admin, mariadb-analyze, mariadb-backup, mariadb-binlog, mariadb-check, mariadb-conv, mariadb-convert-table-format, mariadb-dump, mariadb-dumpslow, mariadb-find-rows, mariadb-fix-extensions, mariadb-hotcopy, mariadb-import, mariadb-install-db, mariadb-optimize, mariadb-plugin, mariadb-repair, mariadb-report, mariadb-secure-installation, mariadb-service-convert, mariadb-setpermission, mariadb-show, mariadb-slap, mariadb-tzinfo-to-sql, mariadb-upgrade, mariadb-waitpid, mariadbcheck, mariadbd-multi, mariadbd-safe, mariadbd-safe-helper |
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GITHUB
|
mongo |
MongoDB is a free and open-source cross-platform document-oriented database program. Classified as a NoSQL database program, MongoDB uses JSON-like documents with schemata. |
mongo, mongod, mongodump, mongoexport, mongofiles, mongoimport, mongos, mongostat, mongostore, mongotop |
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GITHUB
|
mysql |
MySQL is the world's most popular open source database. |
mysql, mysql_config_editor, mysql_secure_installation, mysql_ssl_rsa_setup, mysql_tzinfo_to_sql, mysql_upgrade, mysqladmin, mysqlbinlog, mysqlcheck, mysqld_multi, mysqld_safe, mysqldump, mysqldumpslow, mysqlimport, mysqlpump, mysqlshow, mysqlslap |
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GITHUB
|
ncbi/blast |
The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. |
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GITHUB
|
nginx |
Nginx (pronounced 'engine-x') is an open source reverse proxy server for HTTP, HTTPS, SMTP, POP3, and IMAP protocols, as well as a load balancer, HTTP cache, and a web server (origin server). |
nginx, nginx-debug |
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GITHUB
|
node |
Node.js is a software platform for scalable server-side and networking applications. |
node, nodejs, npm, npx, yarn, yarnpkg |
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GITHUB
|
nvcr.io/hpc/autodock |
The AutoDock-GPU Suite is a growing collection of methods for computational docking and virtual screening, for use in structure-based drug discovery and exploration of the basic mechanisms of biomolecular structure and function. More info on AutoDock-GPU be located at https://ccsb.scripps.edu/autodock/ and https://github.com/ccsb-scripps/AutoDock-GPU#usage. |
autodock |
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GITHUB
|
nvcr.io/hpc/gromacs |
GROMACS is a popular molecular dynamics application used to simulate proteins and lipids. |
python |
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GITHUB
|
nvcr.io/hpc/lammps |
Large-scale Atomic/Molecular Massively Parallel Simulator (LAMMPS) is a software application designed for molecular dynamics simulations. It has the potentials for solid-state materials (metals, semiconductor), soft matter (biomolecules, polymers), and coarse-grained or mesoscopic systems. The main use-case is atom scale particle modeling or, more generically, as a parallel particle simulator at the atomic, meson, or continuum scale. LAMMPS runs on single processors or in parallel using message-passing techniques and a spatial-decomposition of the simulation domain. Read more on the LAMMPS website https://lammps.sandia.gov/. |
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GITHUB
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nvcr.io/hpc/namd |
NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD uses the popular molecular graphics program VMD for simulation setup and trajectory analysis, but is also file-comp atible with AMBER, CHARMM, and X-PLOR. |
charmrun, flipbinpdb, flipdcd, namd3, psfgen, sortreplicas, vmd |
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GITHUB
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nvcr.io/hpc/preflightcheck |
The Pre-Flight Check container verifies that the container runtime is setup correctly for GPUs and InfiniBand. |
|
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GITHUB
|
nvcr.io/hpc/quantum_espresso |
Quantum ESPRESSO is an integrated suite of Open-Source computer codes for electronic-structure calculations and materials modeling at the nanoscale based on density-functional theory, plane waves, and pseudopotentials. |
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GITHUB
|
nvcr.io/nvidia/caffe |
NVIDIA Caffe, also known as NVCaffe, is an NVIDIA-maintained fork of Berkeley Vision and Learning Center (BVLC) Caffe tuned for NVIDIA GPUs, particularly in multi-GPU configurations. |
python |
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GITHUB
|
nvcr.io/nvidia/digits |
The NVIDIA Deep Learning GPU Training System (DIGITS) puts the power of deep learning into the hands of engineers and data scientists. |
python |
|
GITHUB
|
nvcr.io/nvidia/hpc-benchmarks |
The NVIDIA HPC-Benchmarks collection provides three NVIDIA accelerated HPC benchmarks: HPL-NVIDIA, HPL-AI-NVIDIA, and HPCG-NVIDIA. |
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GITHUB
|
nvcr.io/nvidia-hpcvis/paraview |
ParaView is one of the most popular visualization software for analyzing HPC datasets. |
pvdataserver, pvrenderserver, pvbatch, pypython, pvserver |
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GITHUB
|
nvcr.io/nvidia/pytorch |
PyTorch is a GPU accelerated tensor computational framework with a Python front end. Functionality can be easily extended with common Python libraries such as NumPy, SciPy, and Cython. Automatic differentiation is done with a tape-based system at both a functional and neural network layer level. |
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GITHUB
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nvcr.io/nvidia/rapidsai/rapidsai |
The RAPIDS suite of software libraries gives you the freedom to execute end-to-end data science and analytics pipelines entirely on GPUs. |
python |
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GITHUB
|
nvcr.io/nvidia/tensorflow |
TensorFlow is an open-source software library for high-performance numerical computation. Its flexible architecture allows easy deployment of computation across a variety of platforms (CPUs, GPUs, TPUs), and from desktops to clusters of servers to mobile and edge devices. |
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GITHUB
|
openjdk |
OpenJDK is an open-source implementation of the Java Platform, Standard Edition. |
jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jdeprscan, jdeps, jfr, jhsdb, jimage, jinfo, jlink, jmap, jmod, jobs, join, jpackage, jps, jrunscript, jshell, jstack, jstat, jstatd |
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GITHUB
|
php |
While designed for web development, the PHP scripting language also provides general-purpose use. |
php, php-cgi, php-config, phpdbg, phpize |
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GITHUB
|
poldracklab/mriqc |
Automatic prediction of quality and visual reporting of MRI scans. |
mriqc |
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GITHUB
|
postgres |
PostgreSQL, often simply 'Postgres', is an object-relational database management system (ORDBMS) with an emphasis on extensibility and standards-compliance. |
clusterdb, createdb, createuser, dropdb, dropuser, initdb, oid2name, pg_archivecleanup, pg_basebackup, pg_checksums, pg_config, pg_controldata, pg_ctl, pg_dump, pg_dumpall, pg_isready, pg_receivewal, pg_recvlogical, pg_resetwal, pg_restore, pg_rewind, pg_standby, pg_test_fsync, pg_test_timing, pg_upgrade, pg_verifybackup, pg_waldump, pgbench, postgres, postmaster, psql, reindexdb, vacuumdb, vacuumlo |
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GITHUB
|
python |
An interpreted, high-level and general-purpose programming language. |
python |
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GITHUB
|
quay.io/biocontainers/10x_bamtofastq |
singularity registry hpc automated addition for 10x_bamtofastq |
bamtofastq |
|
GITHUB
|
quay.io/biocontainers/2pg_cartesian |
shpc-registry automated BioContainers addition for 2pg_cartesian |
gmx, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, protpred-Gromacs-Dominance, protpred-Gromacs-Front, protpred-Gromacs-MC_Metropolis, protpred-Gromacs-Mono, protpred-Gromacs-NSGA2, protpred-Gromacs-Random_Algorithm, protpred-Gromacs-Sort_Method_Files_by_Front_Dominance, protpred-Gromacs-Sort_Method_by_Front_Dominance, protpred-Gromacs-Test_compute_Diehdral, protpred-Gromacs-Test_compute_objetivies, protpred-Gromacs-Test_crossover, protpred-Gromacs-Test_dm_refinement, protpred-Gromacs-Test_load_population, protpred-Gromacs-Test_random_number, protpred-Gromacs-Test_rotation, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
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GITHUB
|
quay.io/biocontainers/3seq |
singularity registry hpc automated addition for 3seq |
3seq |
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GITHUB
|
quay.io/biocontainers/aacon |
singularity registry hpc automated addition for aacon |
aacon, jwebserver, pcre2posix_test, jpackage, cups-config, ippeveprinter, ipptool, hb-info, tjbench, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole |
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GITHUB
|
quay.io/biocontainers/abacas |
shpc-registry automated BioContainers addition for abacas |
abacas.1.3.1.pl, abacas.pl, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot |
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GITHUB
|
quay.io/biocontainers/abacat |
shpc-registry automated BioContainers addition for abacat |
phenotyping.py, prodigal.py, prokka.py, fastANI, annotate.py, prodigal, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/abawaca |
shpc-registry automated BioContainers addition for abawaca |
abawaca |
|
GITHUB
|
quay.io/biocontainers/abeona |
shpc-registry automated BioContainers addition for abeona |
abeona, cortexpy, kallisto, mccortex, mccortex127, mccortex31, mccortex63, mccortex95, nextflow, nextflow.bak, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
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GITHUB
|
quay.io/biocontainers/abismal |
shpc-registry automated BioContainers addition for abismal |
abismal, abismalidx, simreads |
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GITHUB
|
quay.io/biocontainers/abnumber |
shpc-registry automated BioContainers addition for abnumber |
ANARCI, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat |
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GITHUB
|
quay.io/biocontainers/abpoa |
shpc-registry automated BioContainers addition for abpoa |
abpoa |
|
GITHUB
|
quay.io/biocontainers/abra2 |
shpc-registry automated BioContainers addition for abra2 |
abra2, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
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GITHUB
|
quay.io/biocontainers/abricate |
shpc-registry automated BioContainers addition for abricate |
abricate, abricate-get_db, any2fasta, funzip, unzipsfx, zipgrep, zipinfo, unzip, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee |
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GITHUB
|
quay.io/biocontainers/abritamr |
shpc-registry automated BioContainers addition for abritamr |
abriTAMR, abritamr, amr_report, amrfinder, amrfinder_update, dna_mutation, fasta2parts, fasta_check, fasta_extract, gff_check, vba_extract.py, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml |
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GITHUB
|
quay.io/biocontainers/abromics_galaxy_json_extractor |
singularity registry hpc automated addition for abromics_galaxy_json_extractor |
abromics_extract, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/abruijn |
shpc-registry automated BioContainers addition for abruijn |
abruijn, abruijn-assemble, abruijn-polish, abruijn-repeat, easy_install-2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5 |
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GITHUB
|
quay.io/biocontainers/abundancebin |
shpc-registry automated BioContainers addition for abundancebin |
abundancebin |
|
GITHUB
|
quay.io/biocontainers/abyss-k128 |
shpc-registry automated BioContainers addition for abyss-k128 |
|
|
GITHUB
|
quay.io/biocontainers/abyss |
shpc-registry automated BioContainers addition for abyss |
ABYSS, ABYSS-P, abyss-align, abyss-bloom, abyss-bloom-dbg, abyss-bloom-dist.mk, abyss-bloom-dist.mk.Makefile, abyss-bowtie, abyss-bowtie2, abyss-bwa, abyss-bwamem, abyss-bwasw, abyss-db-txt, abyss-dida, abyss-fac, abyss-fatoagp, abyss-filtergraph, abyss-fixmate, abyss-fixmate-ssq, abyss-gapfill, abyss-gc, abyss-index, abyss-junction, abyss-kaligner, abyss-layout, abyss-longseqdist, abyss-map, abyss-map-ssq, abyss-mergepairs, abyss-overlap, abyss-paired-dbg, abyss-paired-dbg-mpi, abyss-pe, abyss-pe.Makefile, abyss-rresolver-short, abyss-samtoafg, abyss-scaffold, abyss-sealer, abyss-stack-size, abyss-tabtomd, abyss-todot, abyss-tofastq, irqtop, lsirq, nsenter, prlimit, scriptlive, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject |
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GITHUB
|
quay.io/biocontainers/ac-diamond |
shpc-registry automated BioContainers addition for ac-diamond |
ac-diamond |
|
GITHUB
|
quay.io/biocontainers/ac |
shpc-registry automated BioContainers addition for ac |
AC |
|
GITHUB
|
quay.io/biocontainers/acdc |
singularity registry hpc automated addition for acdc |
acdc, acdc-filter-fasta-by-name.awk, acdc-make-fastas, kraken, kraken-build, kraken-filter, kraken-mpa-report, kraken-report, kraken-translate, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, jellyfish, tar, idn2, wget |
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GITHUB
|
quay.io/biocontainers/aci |
singularity registry hpc automated addition for aci |
aci, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
|
quay.io/biocontainers/acms |
singularity registry hpc automated addition for acms |
acmbuild, acmbuild_checkCompatibility, acmbuild_train, acmsearch, addRNAoptions.pl, gapc, ghc, ghc-8.10.7, ghc-pkg, ghc-pkg-8.10.7, ghci, ghci-8.10.7, hp2ps, hpc, hsc2hs, runghc, runghc-8.10.7, runhaskell |
|
GITHUB
|
quay.io/biocontainers/actc |
singularity registry hpc automated addition for actc |
actc |
|
GITHUB
|
quay.io/biocontainers/adam |
shpc-registry automated BioContainers addition for adam |
adam-shell, adam-submit, beeline, beeline.cmd, csv-import, docker-image-tool.sh, elasticurl, elasticurl_cpp, elastipubsub, find-spark-home, find-spark-home.cmd, find_spark_home.py, load-spark-env.cmd, load-spark-env.sh, orc-memory, orc-scan, pyspark, pyspark.cmd, pyspark2.cmd, run-example, run-example.cmd, spark-class, spark-class.cmd, spark-class2.cmd, spark-shell, spark-shell.cmd, spark-shell2.cmd, spark-sql, spark-sql.cmd, spark-sql2.cmd, spark-submit, spark-submit.cmd, spark-submit2.cmd, sparkR, sparkR.cmd, sparkR2.cmd, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin |
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GITHUB
|
quay.io/biocontainers/adapt |
shpc-registry automated BioContainers addition for adapt |
analyze_coverage.py, design.py, design_naively.py, import_pb_to_tensorboard, pick_test_targets.py, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2 |
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GITHUB
|
quay.io/biocontainers/adapterremoval |
shpc-registry automated BioContainers addition for adapterremoval |
AdapterRemoval, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/adapterremovalfixprefix |
shpc-registry automated BioContainers addition for adapterremovalfixprefix |
AdapterRemovalFixPrefix, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
|
quay.io/biocontainers/addrg |
shpc-registry automated BioContainers addition for addrg |
addrg, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/admixtools |
shpc-registry automated BioContainers addition for admixtools |
convertf, dof4, dof4a, dowtjack, expfit.sh, gcount, getresult, grabpars, jackdiff, kimf, mergeit, mkpretty, numlines, qp3Pop, qp4diff, qpAdm, qpBound, qpDpart, qpDstat, qpF4ratio, qpGraph, qpWave, qpdslow, qpff3base, qpfmv, qpfstats, qpmix, qpreroot, rexpfit.r, rolloff, rolloffp, simpjack2, wtjack.pl, xtractcol, xtractcolv |
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GITHUB
|
quay.io/biocontainers/admixture |
shpc-registry automated BioContainers addition for admixture |
admixture |
|
GITHUB
|
quay.io/biocontainers/adpred |
shpc-registry automated BioContainers addition for adpred |
run-adpred, theano-cache, theano-nose, freeze_graph, mako-render, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard |
|
GITHUB
|
quay.io/biocontainers/advntr |
shpc-registry automated BioContainers addition for advntr |
adVNTR-Filtering, advntr, unit2, theano-cache, theano-nose, freeze_graph, mako-render, tf_upgrade_v2, muscle, tflite_convert, saved_model_cli, toco |
|
GITHUB
|
quay.io/biocontainers/aegean |
shpc-registry automated BioContainers addition for aegean |
canon-gff3, gaeval, genometools-config, gt, locuspocus, parseval, pmrna, tidygff3, xtractore, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, 2to3-3.9, idle3.9, pydoc3.9 |
|
GITHUB
|
quay.io/biocontainers/aenum |
shpc-registry automated BioContainers addition for aenum |
2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5, wish8.5 |
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GITHUB
|
quay.io/biocontainers/aeon |
singularity registry hpc automated addition for aeon |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/afplot |
shpc-registry automated BioContainers addition for afplot |
|
|
GITHUB
|
quay.io/biocontainers/afterqc |
shpc-registry automated BioContainers addition for afterqc |
after.py, barcodeprocesser.py, bubbledetector.py, bubbleprocesser.py, circledetector.py, debubble.py, fastq.py, preprocesser.py, qcreporter.py, qualitycontrol.py, util.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/agat |
shpc-registry automated BioContainers addition for agat |
agat_convert_bed2gff.pl, agat_convert_embl2gff.pl, agat_convert_genscan2gff.pl, agat_convert_mfannot2gff.pl, agat_convert_minimap2_bam2gff.pl, agat_convert_sp_gff2bed.pl, agat_convert_sp_gff2gtf.pl, agat_convert_sp_gff2tsv.pl, agat_convert_sp_gff2zff.pl, agat_convert_sp_gxf2gxf.pl, agat_sp_Prokka_inferNameFromAttributes.pl, agat_sp_add_attribute_shortest_exon_size.pl, agat_sp_add_attribute_shortest_intron_size.pl, agat_sp_add_introns.pl, agat_sp_add_start_and_stop.pl, agat_sp_alignment_output_style.pl, agat_sp_clipN_seqExtremities_and_fixCoordinates.pl, agat_sp_compare_two_BUSCOs.pl, agat_sp_compare_two_annotations.pl, agat_sp_complement_annotations.pl, agat_sp_ensembl_output_style.pl, agat_sp_extract_attributes.pl, agat_sp_extract_sequences.pl, agat_sp_filter_by_ORF_size.pl, agat_sp_filter_by_locus_distance.pl, agat_sp_filter_by_mrnaBlastValue.pl, agat_sp_filter_feature_by_attribute_presence.pl, agat_sp_filter_feature_by_attribute_value.pl, agat_sp_filter_feature_from_keep_list.pl, agat_sp_filter_feature_from_kill_list.pl, agat_sp_filter_gene_by_intron_numbers.pl, agat_sp_filter_gene_by_length.pl, agat_sp_filter_incomplete_gene_coding_models.pl, agat_sp_filter_record_by_coordinates.pl, agat_sp_fix_cds_phases.pl, agat_sp_fix_features_locations_duplicated.pl, agat_sp_fix_fusion.pl, agat_sp_fix_longest_ORF.pl, agat_sp_fix_overlaping_genes.pl, agat_sp_fix_small_exon_from_extremities.pl, agat_sp_flag_premature_stop_codons.pl, agat_sp_flag_short_introns.pl, agat_sp_functional_statistics.pl, agat_sp_keep_longest_isoform.pl, agat_sp_kraken_assess_liftover.pl, agat_sp_list_short_introns.pl, agat_sp_load_function_from_protein_align.pl, agat_sp_manage_IDs.pl, agat_sp_manage_UTRs.pl, agat_sp_manage_attributes.pl, agat_sp_manage_functional_annotation.pl, agat_sp_manage_introns.pl, agat_sp_merge_annotations.pl, agat_sp_prokka_fix_fragmented_gene_annotations.pl, agat_sp_sensitivity_specificity.pl, agat_sp_separate_by_record_type.pl, agat_sp_statistics.pl, agat_sp_webApollo_compliant.pl, agat_sq_add_attributes_from_tsv.pl, agat_sq_add_hash_tag.pl, agat_sq_add_locus_tag.pl, agat_sq_count_attributes.pl, agat_sq_filter_feature_from_fasta.pl, agat_sq_list_attributes.pl, agat_sq_manage_IDs.pl, agat_sq_manage_attributes.pl, agat_sq_mask.pl, agat_sq_remove_redundant_entries.pl, agat_sq_repeats_analyzer.pl, agat_sq_reverse_complement.pl, agat_sq_rfam_analyzer.pl, agat_sq_split.pl, agat_sq_stat_basic.pl, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc |
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GITHUB
|
quay.io/biocontainers/agc |
singularity registry hpc automated addition for agc |
agc |
|
GITHUB
|
quay.io/biocontainers/age-metasv |
shpc-registry automated BioContainers addition for age-metasv |
age_align |
|
GITHUB
|
quay.io/biocontainers/agfusion |
shpc-registry automated BioContainers addition for agfusion |
agfusion, epylint, isort, nose2, nose2-2.7, nose2-3.6, pyensembl, pylint, pyreverse, symilar, coverage, futurize, pasteurize, f2py3.8, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/agg |
shpc-registry automated BioContainers addition for agg |
agg |
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GITHUB
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quay.io/biocontainers/agouti |
singularity registry hpc automated addition for agouti |
agouti, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/agrvate |
shpc-registry automated BioContainers addition for agrvate |
agrvate, file, snippy, snippy-clean_full_aln, snippy-core, snippy-multi, snippy-vcf_extract_subs, snippy-vcf_report, snippy-vcf_to_tab, vcfnormalizesvs, vcfnull2ref, vcfunphase, snp-sites, filter-table, spdi2prod, vt, seqkit, plotBfst.R, plotHapLrt.R, plotHaplotypes.R, plotPfst.R, plotSmoothed.R |
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GITHUB
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quay.io/biocontainers/airr |
shpc-registry automated BioContainers addition for airr |
airr-tools, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/akt |
shpc-registry automated BioContainers addition for akt |
akt |
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GITHUB
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quay.io/biocontainers/albatradis |
shpc-registry automated BioContainers addition for albatradis |
add_tradis_tags, albatradis, albatradis-annotation, albatradis-artemis_project, albatradis-gene_reports, albatradis-presence_absence, albatradis-scatterplot, bacteria_tradis, basqcol, check_tradis_tags, combine_tradis_plots, fetchseq, filter_tradis_tags, mixreads, readstats, remove_tradis_tags, simqual, simread, smalt, splitmates, splitreads, tradis_comparison.R, tradis_essentiality.R, tradis_gene_insert_sites, tradis_merge_plots, tradis_plot, trunkreads, fastaq, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches |
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GITHUB
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quay.io/biocontainers/alcor |
singularity registry hpc automated addition for alcor |
AlcoR |
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GITHUB
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quay.io/biocontainers/alder |
shpc-registry automated BioContainers addition for alder |
alder, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
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GITHUB
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quay.io/biocontainers/alen |
singularity registry hpc automated addition for alen |
alen |
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GITHUB
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quay.io/biocontainers/aletsch |
shpc-registry automated BioContainers addition for aletsch |
aletsch, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/alevin-fry |
shpc-registry automated BioContainers addition for alevin-fry |
alevin-fry |
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GITHUB
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quay.io/biocontainers/alfa |
shpc-registry automated BioContainers addition for alfa |
alfa, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed |
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GITHUB
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quay.io/biocontainers/alfred |
shpc-registry automated BioContainers addition for alfred |
alfred, htsfile, bgzip, tabix |
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GITHUB
|
quay.io/biocontainers/align_it |
shpc-registry automated BioContainers addition for align_it |
align-it, babel, obchiral, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop |
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GITHUB
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quay.io/biocontainers/aligncov |
singularity registry hpc automated addition for aligncov |
aligncov, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl |
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GITHUB
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quay.io/biocontainers/alignlib-lite |
shpc-registry automated BioContainers addition for alignlib-lite |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/alignment |
shpc-registry automated BioContainers addition for alignment |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/alignoth |
singularity registry hpc automated addition for alignoth |
alignoth |
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GITHUB
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quay.io/biocontainers/alignstats |
shpc-registry automated BioContainers addition for alignstats |
alignstats, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/allo |
singularity registry hpc automated addition for allo |
allo, flatc, protoc-24.4.0, h5tools_test_utils, import_pb_to_tensorboard, h5fuse.sh, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, h5delete, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, markdown_py, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen |
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GITHUB
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quay.io/biocontainers/altair-mf |
singularity registry hpc automated addition for altair-mf |
AltaiR |
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GITHUB
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quay.io/biocontainers/altamisa |
shpc-registry automated BioContainers addition for altamisa |
isatab2dot, isatab2isatab, isatab_validate, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/alv |
shpc-registry automated BioContainers addition for alv |
alv, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/amap |
shpc-registry automated BioContainers addition for amap |
amap, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides |
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GITHUB
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quay.io/biocontainers/amas |
shpc-registry automated BioContainers addition for amas |
AMAS.py, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/amdirt |
singularity registry hpc automated addition for amdirt |
AMDirT, streamlit, streamlit.cmd, watchmedo, markdown-it, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, tjbench, gflags_completions.sh, jupyter-kernel, jupyter-kernelspec, jupyter-run, f2py3.11, curve_keygen, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, ipython3 |
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GITHUB
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quay.io/biocontainers/aminoextract |
singularity registry hpc automated addition for aminoextract |
AminoExtract, aminoextract, markdown-it, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, pygmentize, python3.1 |
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GITHUB
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quay.io/biocontainers/amos |
shpc-registry automated BioContainers addition for amos |
AMOScmp, AMOScmp-shortReads, AMOScmp-shortReads-alignmentTrimmed, Bundler, Chainer, FRCurve, FilterEdgesByCluster, Joiner, Linearize, MarkRepeats, Minimo, OrientContigs, OutputMotifs, OutputResults, OutputScaffolds, RankMotifs, ace2contig, agp2amos, amos2ace, amos2frg, amos2mates, amos2sq, amosvalidate, analyze-read-depth, analyzeSNPs, arachne2ctg, arachne2scaff, arrive, arrive2, asmQC, asmQC2, assembleRNAs, astats, bank-clean, bank-combine, bank-mapping, bank-report, bank-transact, bank-tutorial, bank-unlock, bank2contig, bank2coverage, bank2fasta, bank2lib, bank2sam, bank2scaff, benchmark2arachne, benchmark2ca, benchmark2mates, benchmark2ta, benchmark_qual, benchmark_seq, blasr2coords, blat2nucmer, ca2ctg, ca2mates, ca2scaff, ca2singletons, ca2ta, casm-breaks, casm-layout, castats, cavalidate, cestat-cov, cgb2ctg, clk, clusterSnps, contig-cmp, contig2contig, coords2cam, count-kmers, count-qmers, ctg2fasta, ctg2umdcontig, ctgovl, cvgChop, cvgStat, delta2clr, delta2cvg, dumpContigsAsReads, dumpFeatures, dumpmates, dumpreads, excl_seqs, extractContig, extractScaffold, fasta_select_len, fasta_to_fastq, fastq64_to_fastq33, fastq_filter, fastq_rename, fastq_to_fasta_fast, fastqqc, filter_contig, filter_seq, filterfrg, find-duplicate-reads, find-query-breaks, find-tandem, findChimeras, findMissingMates, findTcovSnp, find_ends, fixfastq, fixfrg, fixlib, frg-umd-merge, frg2fasta, frg2fastq, frg2ta, gap-links, gc-content-plot, gccontent, gene_asm, genome-complexity, genome-complexity-fast, getFRCvalues, getN50, getlengths, goBambus2, grow-readbank, hash-overlap, insert-sizes, iterate, kmer-count, kmer-cov, kmer-cov-plot, kmers, ktrimfrg, library-histogram, list-linked-contigs, listGCContent, listReadPlacedStatus, listSingletonMates, listSurrogates, listcontigreads, load-overlaps, loadFeatures, make-consensus, make-consensus_poly, merge-contigs, message-count, message-extract, message-validate, minimus, minimus2, minimus2-blat, missing-reads, normalizeScaffold, nucmer2ovl, nucmerAnnotate, olapsFromContig, overlap-align, ovl-degr-dist, ovl2OVL, parsecasm, partitionBank, phd2afg, postCAqc, preTA, preassembleFrgs, printScaff, pullTArchive, pyrosim, qmer-filter, read-cov-plot, readinfo2cam, rearrangeSeqs, recallConsensus, renameReads, rerunMultiTest, resetFragLibrary, revFasta, revScaffold, runAmos, runMultiTest, runTA, runTest, running-cmp, samPileupConsensus, samtoafg, scaff2fasta, scaffoldRange2Ungapped, select-reads, show-ma-asm, shuffleBank, sidebyside, sim-cover-depth, sim-cover2, sim-shotgun, simple-overlap, simpleContigLoader, simplifyLibraries, singles, sort2, stats, summarizeMultiTest, suspiciousfeat2region, ta2ace, tab2ovls, tagsum-reduce, tandemCollapse, tarchive2amos, tarchive2ca, tigger, tiling2cam, toAmos, toAmos_new, toArachne, trace_comment, trace_comments, trace_convert, trace_scf_dump, trace_seq, translate-fasta, trimByOvl, trimends, trimfrg, untangle, updateBankPositions, updateClrRanges, updateDeltaClr, updateLibSizes, vecfix, verify-layout, jellyfish, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer |
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GITHUB
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quay.io/biocontainers/ampcombi |
shpc-registry automated BioContainers addition for ampcombi |
amp_database.py, amp_fasta.py, ampcombi, ampcombi.py, check_input.py, diamond_alignment.sh, diamond_makedb.sh, print_header.py, reformat_tables.py, diamond, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/amplicon_coverage_plot |
shpc-registry automated BioContainers addition for amplicon_coverage_plot |
amplicov, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/ampliconclassifier |
shpc-registry automated BioContainers addition for ampliconclassifier |
amplicon_classifier.py, amplicon_similarity.py, amplicons_intersecting_bed.py, feature_similarity.py, make_input.sh, make_results_table.py, softlink_images.py, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp |
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GITHUB
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quay.io/biocontainers/ampliconsuite |
singularity registry hpc automated addition for ampliconsuite |
AmpliconSuite-pipeline.py, GroupedAnalysisAmpSuite.py, cnvkit.py, hb-info, flask, tjbench, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, qualfa2fq.pl, xa2multi.pl, bwa, futurize, pasteurize, fasta-sanitize.pl, plot-ampliconstats, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, f2py3.10, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl |
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GITHUB
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quay.io/biocontainers/amplify |
shpc-registry automated BioContainers addition for amplify |
AMPlify, train_amplify, theano-cache, theano-nose, freeze_graph, mako-render, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, markdown_py |
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GITHUB
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quay.io/biocontainers/ampligone |
singularity registry hpc automated addition for ampligone |
AmpliGone, ampligone, minimap2.py, cmark, pygmentize, futurize, pasteurize, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/amplisim |
singularity registry hpc automated addition for amplisim |
amplisim |
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GITHUB
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quay.io/biocontainers/amptk |
shpc-registry automated BioContainers addition for amptk |
amptk, amptk_synthetic_mock.py, bold2utax.py, distro, pyfastx, biom, FastTree-2.1.10.c, vsearch, FastTreeMP, FastTree, fasttree, mafft-sparsecore.rb, einsi, fftns, fftnsi |
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GITHUB
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quay.io/biocontainers/amused |
shpc-registry automated BioContainers addition for amused |
AMUSED, AMUSED-KS, alignKMers, bundle, bundler, racc, racc2y, shuffleCodons.rb, shuffleCodonsAddMotifs.rb, y2racc, gdbm_dump, gdbm_load, gdbmtool, jemalloc-config, jeprof, jemalloc.sh, erb, gem, irb, rake |
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GITHUB
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quay.io/biocontainers/anadama2 |
shpc-registry automated BioContainers addition for anadama2 |
anadama2_aws_batch_task, ptangle, pweave, pweave-convert, pypublish, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run, iptest3, curve_keygen, iptest, ipython3, ipython, jupyter-trust |
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GITHUB
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quay.io/biocontainers/ananse |
shpc-registry automated BioContainers addition for ananse |
GenomeOntology.pl, HomerConfig.pm, HomerSVGLogo.pm, ProSampler, SIMA.pl, Statistics.pm, XXmotif, addData.pl, addDataHeader.pl, addGeneAnnotation.pl, addInternalData.pl, addOligos.pl, adjustPeakFile.pl, adjustRedunGroupFile.pl, analyzeChIP-Seq.pl, analyzeHiC, analyzeRNA.pl, analyzeRepeats.pl, ananse, annotateInteractions.pl, annotatePeaks.pl, annotateRelativePosition.pl, annotateTranscripts.pl, assignGeneWeights.pl, assignGenomeAnnotation, assignTSStoGene.pl, batchAnnotatePeaksHistogram.pl, batchFindMotifs.pl, batchFindMotifsGenome.pl, batchMakeHiCMatrix.pl, batchMakeMultiWigHub.pl, batchMakeTagDirectory.pl, batchParallel.pl, bed2DtoUCSCbed.pl, bed2pos.pl, bed2tag.pl, bedToGenePred, bigBedToBed, blat2gtf.pl, bridgeResult2Cytoscape.pl, changeNewLine.pl, checkPeakFile.pl, checkTagBias.pl, chopUpBackground.pl, chopUpPeakFile.pl, chopify.pl, cleanUpPeakFile.pl, cleanUpSequences.pl, cluster2bed.pl, cluster2bedgraph.pl, combineGO.pl, combineHubs.pl, combine_peaks, compareMotifs.pl, condenseBedGraph.pl, cons2fasta.pl, conservationAverage.pl, conservationPerLocus.pl, convertCoordinates.pl, convertIDs.pl, convertOrganismID.pl, coverage_table, dinamo, dreme-py3, dtc, duplicateCol.pl, eland2tags.pl, fasta-dinucleotide-shuffle-py3, fasta-hamming-enrich-py3, fasta-re-match, fasta2tab.pl, fastq2fasta.pl, filterListBy.pl, filterTADsAndCPs.pl, filterTADsAndLoops.pl, findGO.pl, findGOtxt.pl, findHiCCompartments.pl, findHiCDomains.pl, findHiCInteractionsByChr.pl, findKnownMotifs.pl, findMotifs.pl, findMotifsGenome.pl, findPeaks, findRedundantBLAT.pl, findTADsAndLoops.pl, findTADsAndLoopsFromRelMatrix, findTopMotifs.pl, findcsRNATSS.pl, flipPC1toMatch.pl, freq2group.pl, gadem, genePredToBed, genePredToGtf, genericConvertIDs.pl, genomeOntology, genomepy, getChrLengths.pl, getConservedRegions.pl, getDiffExpression.pl, getDifferentialBedGraph.pl, getDifferentialPeaks, getDifferentialPeaksReplicates.pl, getDistalPeaks.pl, getFocalPeaks.pl, getGWASoverlap.pl, getGenesInCategory.pl, getGenomeTilingPeaks, getHiCcorrDiff.pl, getHomerQCstats.pl, getLikelyAdapters.pl, getMappableRegions, getMappingStats.pl, getPartOfPromoter.pl, getPeakTags, getPos.pl, getRandomReads.pl, getSiteConservation.pl, getTopPeaks.pl, gff2pos.pl, gff3ToGenePred, gimme, go2cytoscape.pl, groupSequences.pl, gtfToGenePred, homer, homer2, homerTools, joinFiles.pl, lightning_predict, lightning_train, loadGenome.pl, loadPromoters.pl, makeBigBedMotifTrack.pl, makeBigWig.pl, makeBinaryFile.pl, makeHiCWashUfile.pl, makeMetaGeneProfile.pl, makeMultiWigHub.pl, makeTagDirectory, makeUCSCfile, map-fastq.pl, meme-chip_html_to_tsv, merge2Dbed.pl, mergeData.pl, mergePeaks, momo, motif2Jaspar.pl, motif2Logo.pl, parseGTF.pl, plasma_store_server, pos2bed.pl, prepForR.pl, preparseGenome.pl, profile2seq.pl, qseq2fastq.pl, randRemoveBackground.pl, randomizeGroupFile.pl, randomizeMotifs.pl, removeAccVersion.pl, removeBadSeq.pl, removeOutOfBoundsReads.pl, removePoorSeq.pl, removeRedundantPeaks.pl, renamePeaks.pl, resizePosFile.pl, revoppMotif.pl, rotateHiCmatrix.pl, runHiCpca.pl, sam2spliceJunc.pl, scanMotifGenomeWide.pl, scrambleFasta.pl, selectRepeatBg.pl, seq2profile.pl, subtractBedGraphs.pl, subtractBedGraphsDirectory.pl, tab2fasta.pl, tag2bed.pl, tag2pos.pl, tagDir2HiCsummary.pl, tagDir2bed.pl, tagDir2hicFile.pl, thrift, trawler, weeder2, xsltproc_lite, zipHomerResults.pl, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip |
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GITHUB
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quay.io/biocontainers/anansescanpy |
singularity registry hpc automated addition for anansescanpy |
hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, tjbench, aec, scanpy, numba, pycc, natsort, fonttools, pyftmerge, pyftsubset, ttx, normalizer, tqdm, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug |
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GITHUB
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quay.io/biocontainers/anansnake |
singularity registry hpc automated addition for anansnake |
anansnake, bedToGenePred, bsdcat, bsdcpio, bsdtar, conda2solv, deseq2science, dumpsolv, genePredToBed, genePredToGtf, genomepy, gff3ToGenePred, gtfToGenePred, installcheck, mamba, mamba-package, matplotlib, mergesolv, pysradb, repo2solv, seq2science, testsolv, nosetests-3.9, conda-env, cph, plac_runner.py, yte, docutils, nosetests, pulptest, cbc, clp, vcf_sample_filter.py, vcf_filter.py, vcf_melt, snakemake, snakemake-bash-completion, tabulate, jupyter-trust, faidx, jupyter, jupyter-migrate, jupyter-troubleshoot, my_print_defaults, mysql_config, perror, rst2html4.py |
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GITHUB
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quay.io/biocontainers/anarci |
shpc-registry automated BioContainers addition for anarci |
ANARCI, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat |
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GITHUB
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quay.io/biocontainers/ancestry_hmm-s |
shpc-registry automated BioContainers addition for ancestry_hmm-s |
ahmm-s |
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GITHUB
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quay.io/biocontainers/anchorwave |
shpc-registry automated BioContainers addition for anchorwave |
anchorwave, anchorwave_avx2, anchorwave_avx512, anchorwave_sse2, anchorwave_sse4.1, atoiindex, bulk-counts, cmetindex, configure, cpuid, dbsnp_iit, ensembl_genes, fa_coords, get-genome, gff3_genes, gff3_introns, gff3_splicesites, gmap.nosimd, gmap.sse42, gmap_build, gmap_cat, gmap_process, gmapindex, gmapl, gmapl.nosimd, gmapl.sse42, gsnap, gsnap.nosimd, gsnap.sse42, gsnapl, gsnapl.nosimd, gsnapl.sse42, gtf_genes, gtf_introns, gtf_splicesites, gtf_transcript_splicesites, gvf_iit, iit_dump, iit_get, iit_store, indexdb_cat, md_coords, psl_genes, psl_introns, psl_splicesites, sam_sort, sc-counts, snpindex, trindex, vcf_iit, velocity-counts, gmap, sdust, paftools.js, minimap2, k8, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/andi |
shpc-registry automated BioContainers addition for andi |
andi, gsl-randist |
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GITHUB
|
quay.io/biocontainers/anglerfish |
shpc-registry automated BioContainers addition for anglerfish |
anglerfish, sdust, paftools.js, minimap2, k8, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/angsd |
shpc-registry automated BioContainers addition for angsd |
NGSadmix, angsd, contamination, contamination2, haploToPlink, ibs, msHOT2glf, msToGlf, ngsPSMC, printIcounts, realSFS, scounts, smartCount, splitgl, supersim, thetaStat, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/aniclustermap |
singularity registry hpc automated addition for aniclustermap |
ANIclustermap, f2py3.11, skani, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fastANI, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/anise_basil |
shpc-registry automated BioContainers addition for anise_basil |
anise, basil, filter_basil.py, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
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quay.io/biocontainers/aniso8601 |
shpc-registry automated BioContainers addition for aniso8601 |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/anndata |
shpc-registry automated BioContainers addition for anndata |
natsort, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, h5clear |
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GITHUB
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quay.io/biocontainers/anndata2ri |
shpc-registry automated BioContainers addition for anndata2ri |
dunamai, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, natsort, mirror_server, mirror_server_stop |
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GITHUB
|
quay.io/biocontainers/annembed |
singularity registry hpc automated addition for annembed |
annembed |
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GITHUB
|
quay.io/biocontainers/annonars |
singularity registry hpc automated addition for annonars |
annonars |
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GITHUB
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quay.io/biocontainers/annosine2 |
singularity registry hpc automated addition for annosine2 |
RM2Bed.py, annosine2, buildRMLibFromEMBL.pl, buildSummary.pl, corepack, h5tools_test_utils, irf, makeclusterdb, maskFile.pl, wublastToCrossmatch.pl, DateRepeats, DupMasker, ProcessRepeats, RepeatMasker, RepeatProteinMask, calcDivergenceFromAlign.pl, createRepeatLandscape.pl, dupliconToSVG.pl, getRepeatMaskerBatch.pl, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, trfMask, npx, rmblastn, node, npm, blast_report, blastdb_convert, blastdb_path, trf, h5fuse.sh, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl |
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GITHUB
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quay.io/biocontainers/annotsv |
singularity registry hpc automated addition for annotsv |
AnnotSV, INSTALL_annotations.sh, variantconvert, funzip, unzipsfx, zipgrep, zipinfo, unzip, f2py3.11, gff2gff.py, vcf_sample_filter.py, basenc, vcf_filter.py, vcf_melt, b2sum, ls, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp |
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GITHUB
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quay.io/biocontainers/annotwg |
singularity registry hpc automated addition for annotwg |
annotwg, bash, bashbug, cutGenome, egrep, fgrep, grep, gff2gff.py, gawk-5.1.0, basenc, awk, b2sum, gawk, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd |
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GITHUB
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quay.io/biocontainers/anospp-analysis |
singularity registry hpc automated addition for anospp-analysis |
anospp-prep, anospp-qc, tjbench, cutadapt, FastTreeMP, FastTree, fasttree, igzip, pbunzip2, pbzcat, pbzip2, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns, mafft-fftnsi, mafft-ginsi, mafft-homologs.rb, mafft-linsi, mafft-nwns, mafft-nwnsi, mafft-profile |
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GITHUB
|
quay.io/biocontainers/ansible |
shpc-registry automated BioContainers addition for ansible |
ansible, ansible-doc, ansible-galaxy, ansible-playbook, ansible-pull, ansible-vault, smtpd.pyc, easy_install-2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5 |
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GITHUB
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quay.io/biocontainers/ant |
shpc-registry automated BioContainers addition for ant |
ant, ant.bat, ant.cmd, antRun, antRun.bat, antRun.pl, antenv.cmd, complete-ant-cmd.pl, envset.cmd, lcp.bat, runant.pl, runant.py, runrc.cmd, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/antarna |
shpc-registry automated BioContainers addition for antarna |
antarna.py, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex |
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GITHUB
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quay.io/biocontainers/antismash-lite |
shpc-registry automated BioContainers addition for antismash-lite |
antismash, download-antismash-databases, hmmalign2, hmmbuild2, hmmc2, hmmcalibrate2, hmmconvert2, hmmemit2, hmmerfm-exactmatch, hmmfetch2, hmmindex2, hmmpfam2, hmmsearch2, less2scss, pyscss, xsltproc_lite, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip |
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GITHUB
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quay.io/biocontainers/antismash |
shpc-registry automated BioContainers addition for antismash |
antismash, download-antismash-databases, hmmalign2, hmmbuild2, hmmc2, hmmcalibrate2, hmmconvert2, hmmemit2, hmmerfm-exactmatch, hmmfetch2, hmmindex2, hmmpfam2, hmmsearch2, less2scss, pyscss, xsltproc_lite, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip |
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GITHUB
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quay.io/biocontainers/anvio-minimal |
shpc-registry automated BioContainers addition for anvio-minimal |
anvi-analyze-synteny, anvi-cluster-contigs, anvi-compute-ani, anvi-compute-completeness, anvi-compute-functional-enrichment, anvi-compute-functional-enrichment-across-genomes, anvi-compute-functional-enrichment-in-pan, anvi-compute-gene-cluster-homogeneity, anvi-compute-genome-similarity, anvi-compute-metabolic-enrichment, anvi-db-info, anvi-delete-collection, anvi-delete-functions, anvi-delete-hmms, anvi-delete-misc-data, anvi-delete-state, anvi-dereplicate-genomes, anvi-display-contigs-stats, anvi-display-functions, anvi-display-metabolism, anvi-display-pan, anvi-display-structure, anvi-estimate-genome-completeness, anvi-estimate-genome-taxonomy, anvi-estimate-metabolism, anvi-estimate-scg-taxonomy, anvi-estimate-trna-taxonomy, anvi-experimental-organization, anvi-export-collection, anvi-export-contigs, anvi-export-functions, anvi-export-gene-calls, anvi-export-gene-coverage-and-detection, anvi-export-items-order, anvi-export-locus, anvi-export-misc-data, anvi-export-splits-and-coverages, anvi-export-splits-taxonomy, anvi-export-state, anvi-export-structures, anvi-export-table, anvi-gen-contigs-database, anvi-gen-fixation-index-matrix, anvi-gen-gene-consensus-sequences, anvi-gen-gene-level-stats-databases, anvi-gen-genomes-storage, anvi-gen-network, anvi-gen-phylogenomic-tree, anvi-gen-structure-database, anvi-gen-variability-matrix, anvi-gen-variability-network, anvi-gen-variability-profile, anvi-get-aa-counts, anvi-get-codon-frequencies, anvi-get-pn-ps-ratio, anvi-get-sequences-for-gene-calls, anvi-get-sequences-for-gene-clusters, anvi-get-sequences-for-hmm-hits, anvi-get-short-reads-from-bam, anvi-get-short-reads-mapping-to-a-gene, anvi-get-split-coverages, anvi-get-tlen-dist-from-bam, anvi-help, anvi-import-collection, anvi-import-functions, anvi-import-items-order, anvi-import-misc-data, anvi-import-state, anvi-import-taxonomy-for-genes, anvi-import-taxonomy-for-layers, anvi-init-bam, anvi-inspect, anvi-interactive, anvi-matrix-to-newick, anvi-mcg-classifier, anvi-merge, anvi-merge-bins, anvi-merge-trnaseq, anvi-meta-pan-genome, anvi-migrate, anvi-oligotype-linkmers, anvi-pan-genome, anvi-plot-trnaseq, anvi-profile, anvi-profile-blitz, anvi-push, anvi-refine, anvi-rename-bins, anvi-report-inversions, anvi-report-linkmers, anvi-run-hmms, anvi-run-interacdome, anvi-run-kegg-kofams, anvi-run-ncbi-cogs, anvi-run-pfams, anvi-run-scg-taxonomy, anvi-run-trna-taxonomy, anvi-run-workflow, anvi-scan-trnas, anvi-script-add-default-collection, anvi-script-augustus-output-to-external-gene-calls, anvi-script-checkm-tree-to-interactive, anvi-script-compute-ani-for-fasta, anvi-script-compute-bayesian-pan-core, anvi-script-enrichment-stats, anvi-script-estimate-genome-size, anvi-script-filter-fasta-by-blast, anvi-script-filter-hmm-hits-table, anvi-script-fix-homopolymer-indels, anvi-script-gen-CPR-classifier, anvi-script-gen-distribution-of-genes-in-a-bin, anvi-script-gen-functions-per-group-stats-output, anvi-script-gen-genomes-file, anvi-script-gen-help-pages, anvi-script-gen-hmm-hits-matrix-across-genomes, anvi-script-gen-programs-network, anvi-script-gen-programs-vignette, anvi-script-gen-pseudo-paired-reads-from-fastq, anvi-script-gen-scg-domain-classifier, anvi-script-gen-short-reads, anvi-script-gen_stats_for_single_copy_genes.R, anvi-script-gen_stats_for_single_copy_genes.py, anvi-script-gen_stats_for_single_copy_genes.sh, anvi-script-get-collection-info, anvi-script-get-coverage-from-bam, anvi-script-get-hmm-hits-per-gene-call, anvi-script-get-primer-matches, anvi-script-merge-collections, anvi-script-permute-trnaseq-seeds, anvi-script-pfam-accessions-to-hmms-directory, anvi-script-predict-CPR-genomes, anvi-script-process-genbank, anvi-script-process-genbank-metadata, anvi-script-reformat-fasta, anvi-script-run-eggnog-mapper, anvi-script-snvs-to-interactive, anvi-script-tabulate, anvi-script-transpose-matrix, anvi-script-variability-to-vcf, anvi-script-visualize-split-coverages, anvi-search-functions, anvi-search-palindromes, anvi-search-sequence-motifs, anvi-self-test, anvi-setup-interacdome, anvi-setup-kegg-kofams, anvi-setup-ncbi-cogs, anvi-setup-pdb-database, anvi-setup-pfams, anvi-setup-scg-taxonomy, anvi-setup-trna-taxonomy, anvi-show-collections-and-bins, anvi-show-misc-data, anvi-split, anvi-summarize, anvi-summarize-blitz, anvi-tabulate-trnaseq, anvi-trnaseq, anvi-update-db-description, anvi-update-structure-database, anvi-upgrade, average_nucleotide_identity.py, bottle.py, delta_filter_wrapper.py, django-admin, django-admin.py, genbank_get_genomes_by_taxon.py, iu-compute-qual-dicts-from-fastq, iu-deinterleave-fastq, iu-demultiplex, iu-fasta-to-fastq, iu-fastq-to-fasta, iu-filter-merged-reads, iu-filter-quality-bokulich, iu-filter-quality-minoche, iu-gen-configs, iu-gen-matching-fastq-files, iu-interleave-fastq, iu-merge-pairs, iu-remove-ids-from-fastq, iu-subsample-fastq, iu-trim-V6-primers, iu-trim-fastq, iu-visualize-mismatch-distribution, iu-visualize-plot-dicts, iu-visualize-qual-dicts, sqlformat, filter-table, spdi2prod, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb |
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GITHUB
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quay.io/biocontainers/anvio |
shpc-registry automated BioContainers addition for anvio |
EukHighConfidenceFilter, anvi-analyze-synteny, anvi-cluster-contigs, anvi-compute-ani, anvi-compute-completeness, anvi-compute-gene-cluster-homogeneity, anvi-compute-genome-similarity, anvi-db-info, anvi-delete-collection, anvi-delete-hmms, anvi-delete-misc-data, anvi-delete-state, anvi-dereplicate-genomes, anvi-display-contigs-stats, anvi-display-pan, anvi-display-structure, anvi-estimate-genome-completeness, anvi-estimate-genome-taxonomy, anvi-estimate-scg-taxonomy, anvi-experimental-organization, anvi-export-collection, anvi-export-contigs, anvi-export-functions, anvi-export-gene-calls, anvi-export-gene-coverage-and-detection, anvi-export-items-order, anvi-export-locus, anvi-export-misc-data, anvi-export-splits-and-coverages, anvi-export-splits-taxonomy, anvi-export-state, anvi-export-structures, anvi-export-table, anvi-gen-contigs-database, anvi-gen-fixation-index-matrix, anvi-gen-gene-consensus-sequences, anvi-gen-gene-level-stats-databases, anvi-gen-genomes-storage, anvi-gen-network, anvi-gen-phylogenomic-tree, anvi-gen-structure-database, anvi-gen-variability-matrix, anvi-gen-variability-network, anvi-gen-variability-profile, anvi-get-aa-counts, anvi-get-codon-frequencies, anvi-get-enriched-functions-per-pan-group, anvi-get-sequences-for-gene-calls, anvi-get-sequences-for-gene-clusters, anvi-get-sequences-for-hmm-hits, anvi-get-short-reads-from-bam, anvi-get-short-reads-mapping-to-a-gene, anvi-get-split-coverages, anvi-help, anvi-import-collection, anvi-import-functions, anvi-import-items-order, anvi-import-misc-data, anvi-import-state, anvi-import-taxonomy-for-genes, anvi-import-taxonomy-for-layers, anvi-init-bam, anvi-inspect, anvi-interactive, anvi-matrix-to-newick, anvi-mcg-classifier, anvi-merge, anvi-merge-bins, anvi-meta-pan-genome, anvi-migrate, anvi-oligotype-linkmers, anvi-pan-genome, anvi-profile, anvi-push, anvi-refine, anvi-rename-bins, anvi-report-linkmers, anvi-run-hmms, anvi-run-ncbi-cogs, anvi-run-pfams, anvi-run-scg-taxonomy, anvi-run-workflow, anvi-scan-trnas, anvi-script-FASTA-to-contigs-db, anvi-script-add-default-collection, anvi-script-calculate-pn-ps-ratio, anvi-script-checkm-tree-to-interactive, anvi-script-compute-ani-for-fasta, anvi-script-estimate-genome-size, anvi-script-filter-fasta-by-blast, anvi-script-gen-CPR-classifier, anvi-script-gen-distribution-of-genes-in-a-bin, anvi-script-gen-hmm-hits-matrix-across-genomes, anvi-script-gen-programs-network, anvi-script-gen-programs-vignette, anvi-script-gen-scg-domain-classifier, anvi-script-gen-short-reads, anvi-script-gen_stats_for_single_copy_genes.R, anvi-script-gen_stats_for_single_copy_genes.py, anvi-script-gen_stats_for_single_copy_genes.sh, anvi-script-get-collection-info, anvi-script-get-coverage-from-bam, anvi-script-get-hmm-hits-per-gene-call, anvi-script-get-short-reads-matching-something, anvi-script-merge-collections, anvi-script-predict-CPR-genomes, anvi-script-process-genbank, anvi-script-process-genbank-metadata, anvi-script-reformat-fasta, anvi-script-run-eggnog-mapper, anvi-script-run-functional-enrichment-stats, anvi-script-snvs-to-interactive, anvi-script-transpose-matrix, anvi-script-variability-to-vcf, anvi-script-visualize-split-coverages, anvi-search-functions, anvi-self-test, anvi-setup-ncbi-cogs, anvi-setup-pdb-database, anvi-setup-pfams, anvi-setup-scg-databases, anvi-show-collections-and-bins, anvi-show-misc-data, anvi-split, anvi-summarize, anvi-threshold-taxonomy, anvi-update-db-description, anvi-update-structure-database, anvi-upgrade, average_nucleotide_identity.py, bottle.py, calc-prorate, centrifuge, centrifuge-BuildSharedSequence.pl, centrifuge-RemoveEmptySequence.pl, centrifuge-RemoveN.pl, centrifuge-build, centrifuge-build-bin, centrifuge-class, centrifuge-compress.pl, centrifuge-download, centrifuge-inspect, centrifuge-inspect-bin, centrifuge-kreport, centrifuge-sort-nt.pl, centrifuge_evaluate.py, centrifuge_simulate_reads.py, cheroot, cherryd, covels-SE, coves-SE, delta_filter_wrapper.py, django-admin, django-admin.py, eufindtRNA, fasta2gsi, genbank_get_genomes_by_taxon.py, iu-compute-qual-dicts-from-fastq, iu-deinterleave-fastq, iu-demultiplex, iu-fasta-to-fastq, iu-fastq-to-fasta, iu-filter-merged-reads, iu-filter-quality-bokulich, iu-filter-quality-minoche, iu-gen-configs, iu-gen-matching-fastq-files, iu-interleave-fastq, iu-merge-pairs, iu-remove-ids-from-fastq, iu-subsample-fastq, iu-trim-V6-primers, iu-trim-fastq, iu-visualize-mismatch-distribution, iu-visualize-plot-dicts, iu-visualize-qual-dicts, sqlformat, sstofa, tRNAscan-SE, tRNAscan-SE.conf, trnascan-1.4, readal, statal, trimal, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, megahit, megahit_toolkit, bl2seq, blastall |
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GITHUB
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quay.io/biocontainers/any2fasta |
shpc-registry automated BioContainers addition for any2fasta |
any2fasta, perl5.32.0, streamzip |
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GITHUB
|
quay.io/biocontainers/aodp |
shpc-registry automated BioContainers addition for aodp |
aodp, x86_64-conda_cos7-linux-gnu-ld, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches |
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GITHUB
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quay.io/biocontainers/aplanat |
shpc-registry automated BioContainers addition for aplanat |
aplanat, font-awesome-to-png, icon-font-to-png, bokeh, markdown_py, f2py3.10, chardetect, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10 |
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GITHUB
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quay.io/biocontainers/apoc |
shpc-registry automated BioContainers addition for apoc |
apoc |
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GITHUB
|
quay.io/biocontainers/apollo |
shpc-registry automated BioContainers addition for apollo |
arrow, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
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GITHUB
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quay.io/biocontainers/appspam |
shpc-registry automated BioContainers addition for appspam |
appspam |
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GITHUB
|
quay.io/biocontainers/aprfinder |
singularity registry hpc automated addition for aprfinder |
aprfinder |
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GITHUB
|
quay.io/biocontainers/apscale |
singularity registry hpc automated addition for apscale |
apscale, csv-import, demultiplexer, orc-memory, orc-scan, psghelp, psgissue, psgmain, psgsettings, psgupgrade, psgver, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, cutadapt, vsearch, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, protoc, tqdm, f2py3.9 |
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GITHUB
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quay.io/biocontainers/apt-probeset-summarize |
shpc-registry automated BioContainers addition for apt-probeset-summarize |
apt-probeset-summarize |
|
GITHUB
|
quay.io/biocontainers/aptardi |
shpc-registry automated BioContainers addition for aptardi |
aptardi, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, pyrsa-decrypt, pyrsa-encrypt |
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GITHUB
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quay.io/biocontainers/apu-label-propagation |
singularity registry hpc automated addition for apu-label-propagation |
apu-label-propagation |
|
GITHUB
|
quay.io/biocontainers/aquamis |
shpc-registry automated BioContainers addition for aquamis |
aquamis, aquamis_setup.sh, bracken, bracken-build, combine_bracken_outputs.py, confindr, confindr.py, confindr_create_db, confindr_database_setup, create_sampleSheet.sh, est_abundance.py, filter_json.py, generate_kmer_distribution.py, genson, helper_functions.py, icarus.py, kma, kma_index, kma_shm, kma_update, kmer2read_distr, kraken2, kraken2-build, kraken2-inspect, lighter, metaquast, metaquast.py, mlst, parse_json.py, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, shovill, skesa, taxonkit, write_QC_report.Rmd, write_report.Rmd, kmutate.sh, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, rsync-ssl, runhmm.sh, circos, circos.exe, compile.bat, compile.make |
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GITHUB
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quay.io/biocontainers/aquila |
shpc-registry automated BioContainers addition for aquila |
Aquila_assembly_based_variants_call, Aquila_clean, Aquila_phasing_all_variants, Aquila_step0_sortbam, Aquila_step0_sortbam_multilibs, Aquila_step1, Aquila_step1_multilibs, Aquila_step2, paftools.js, minimap2, k8, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
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GITHUB
|
quay.io/biocontainers/aquila_stlfr |
shpc-registry automated BioContainers addition for aquila_stlfr |
Aquila_stLFR_assembly_based_variants_call, Aquila_stLFR_clean, Aquila_stLFR_fastq_preprocess, Aquila_stLFR_phasing_all_variants, Aquila_stLFR_step1, Aquila_stLFR_step2, Aquila_step0_sortbam_hybrid, Aquila_step1_hybrid, paftools.js, minimap2, k8, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
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GITHUB
|
quay.io/biocontainers/aquila_sv |
shpc-registry automated BioContainers addition for aquila_sv |
AquilaSV_step1, AquilaSV_step2, AquilaSV_step3, sdust, paftools.js, minimap2, k8, fasta-sanitize.pl, plot-ampliconstats, f2py3.9, ace2sam, blast2sam.pl, bowtie2sam.pl |
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GITHUB
|
quay.io/biocontainers/aquila_umap |
shpc-registry automated BioContainers addition for aquila_umap |
aquila_umap, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, 2to3-3.7 |
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GITHUB
|
quay.io/biocontainers/aquilasv |
shpc-registry automated BioContainers addition for aquilasv |
AquilaSV_step1, AquilaSV_step2, AquilaSV_step3, cds-mapping-stats, cds-subgraphs, mag-improve, spades-convert-bin-to-fasta, spades-gsimplifier, spades-kmer-estimating, spades-read-filter, spaligner, spades-bwa, spades-core |
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GITHUB
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quay.io/biocontainers/aragorn |
shpc-registry automated BioContainers addition for aragorn |
aragorn |
|
GITHUB
|
quay.io/biocontainers/arb-bio-devel |
shpc-registry automated BioContainers addition for arb-bio-devel |
DrawGram.jar, DrawTree.jar, arb, arb_2_ascii, arb_2_bin, arb_a2ps, arb_bootstrap, arb_clean, arb_consensus_tree, arb_convert_aln, arb_db_server, arb_dist, arb_dnapars, arb_dnarates, arb_echo, arb_edit4, arb_export_rates, arb_export_tree, arb_fastdnaml, arb_flush_mem, arb_gene_probe, arb_help2xml, arb_help_useredit.sh, arb_ign, arb_installubuntu4arb.sh, arb_launcher, arb_ludwig, arb_macsetup, arb_message, arb_naligner, arb_name_server, arb_nexus2newick.awk, arb_notify, arb_ntree, arb_panic, arb_pars, arb_phylo, arb_phyml, arb_primer, arb_probe, arb_proml, arb_proto_2_xsub, arb_protpars, arb_pt_server, arb_raxml, arb_read_tree, arb_readlink, arb_readseq, arb_remote, arb_repair, arb_replace, arb_rexec, arb_rnacma, arb_sed, arb_sleep, arb_textedit, arb_textprint, arb_trace, arb_treegen, arb_wait, arb_wetc, arb_who, clique, consense, contml, contrast, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, dollop, dolmove, dolpenny, drawgram, drawgram_gui, drawtree, drawtree_gui, fig2dev, fig2ps2tex, fitch, gendist, kitsch, mb, mb-mpi, mix, move, mwm, neighbor, ompi-dvm, ompi-ps, ompi-top, orte-dvm, orte-ps, orte-top, pars, penny, phylip, phyml, phyml-mpi, pic2tpic, proml, promlk, protdist, protpars, prun, restdist, restml, retree, seqboot, transfig, treedist, uil, xfig, xmbind, gnuplot, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, FastTree-2.1.10.c, oshCC, oshc++ |
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GITHUB
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quay.io/biocontainers/arb-bio-tools |
shpc-registry automated BioContainers addition for arb-bio-tools |
arb_2_ascii, arb_2_bin, arb_a2ps, arb_consensus_tree, arb_convert_aln, arb_db_server, arb_dnarates, arb_export_rates, arb_export_tree, arb_flush_mem, arb_gene_probe, arb_help2xml, arb_message, arb_naligner, arb_name_server, arb_notify, arb_primer, arb_probe, arb_proto_2_xsub, arb_pt_server, arb_read_tree, arb_readseq, arb_replace, arb_rnacma, arb_treegen, gio-launch-desktop |
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GITHUB
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quay.io/biocontainers/arb-bio |
shpc-registry automated BioContainers addition for arb-bio |
DrawGram.jar, DrawTree.jar, arb, arb_2_ascii, arb_2_bin, arb_a2ps, arb_bootstrap, arb_clean, arb_consensus_tree, arb_convert_aln, arb_db_server, arb_dist, arb_dnapars, arb_dnarates, arb_echo, arb_edit4, arb_export_rates, arb_export_tree, arb_fastdnaml, arb_flush_mem, arb_gene_probe, arb_help2xml, arb_help_useredit.sh, arb_ign, arb_installubuntu4arb.sh, arb_launcher, arb_ludwig, arb_macsetup, arb_message, arb_naligner, arb_name_server, arb_nexus2newick.awk, arb_notify, arb_ntree, arb_panic, arb_pars, arb_phylo, arb_phyml, arb_primer, arb_probe, arb_proml, arb_proto_2_xsub, arb_protpars, arb_pt_server, arb_raxml, arb_read_tree, arb_readlink, arb_readseq, arb_remote, arb_repair, arb_replace, arb_rexec, arb_rnacma, arb_sed, arb_sleep, arb_textedit, arb_textprint, arb_trace, arb_treegen, arb_wait, arb_wetc, arb_who, clique, consense, contml, contrast, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, dollop, dolmove, dolpenny, drawgram, drawgram_gui, drawtree, drawtree_gui, fig2dev, fig2ps2tex, fitch, gendist, kitsch, mb, mb-mpi, mix, move, mwm, neighbor, ompi-dvm, ompi-ps, ompi-top, orte-dvm, orte-ps, orte-top, pars, penny, phylip, phyml, phyml-mpi, pic2tpic, proml, promlk, protdist, protpars, prun, restdist, restml, retree, seqboot, transfig, treedist, uil, xfig, xmbind, gnuplot, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, FastTree-2.1.10.c, oshCC, oshc++ |
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GITHUB
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quay.io/biocontainers/arborator |
singularity registry hpc automated addition for arborator |
arborator, gas, profile_dists, cpuinfo, h5tools_test_utils, cmtime, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, mckey, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, ucmatose, udaddy, udpong, io_demo |
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GITHUB
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quay.io/biocontainers/arboreto |
shpc-registry automated BioContainers addition for arboreto |
dask-scheduler, dask-ssh, dask-worker, bokeh, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/arcas-hla |
shpc-registry automated BioContainers addition for arcas-hla |
arcasHLA, git-lfs, kallisto, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
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GITHUB
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quay.io/biocontainers/archer |
shpc-registry automated BioContainers addition for archer |
archer |
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GITHUB
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quay.io/biocontainers/architeuthis |
singularity registry hpc automated addition for architeuthis |
architeuthis, taxonkit |
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GITHUB
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quay.io/biocontainers/arcs |
shpc-registry automated BioContainers addition for arcs |
arcs, arcs-make, long-to-linked-pe |
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GITHUB
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quay.io/biocontainers/arcsv |
singularity registry hpc automated addition for arcsv |
ArcSV, BKinCheck.pl, BKinCheck_len.pl, bed2pos, createClip.sh, extractBK_bam.sh, extractSoftclipped, fastqToBKS.pl, filter_PopSpec_AF.sh, find_record.sh, format_header.txt, gen_pop_bed.sh, generateBKSinArc.sh, generateBKSinArc_each.sh, generateBKSinBam.pl, generateBKSinBam.sh, generateBKSinBam_each.sh, getSoftclippedAndNearbySeq.py, getfastq.sh, pos2bed, transDeepMEI2BK.sh, gff2gff.py, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, build_env_setup.sh, shiftBed, conda_build.sh, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed |
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GITHUB
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quay.io/biocontainers/arem |
shpc-registry automated BioContainers addition for arem |
arem, elandexport2bed, elandmulti2bed, elandresult2bed, wignorm, sam2bed, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/argh |
shpc-registry automated BioContainers addition for argh |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/argnorm |
singularity registry hpc automated addition for argnorm |
argnorm, pronto, py.test, pytest, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/argopy |
singularity registry hpc automated addition for argopy |
h5tools_test_utils, nc3tonc4, nc4tonc3, ncinfo, httpx, h5fuse.sh, h5delete, zipcmp, zipmerge, ziptool, 2to3-3.12, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff |
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GITHUB
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quay.io/biocontainers/argparse2tool |
shpc-registry automated BioContainers addition for argparse2tool |
argparse2tool, argparse2tool_check_path, futurize, pasteurize, xslt-config, xsltproc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/args_oap |
singularity registry hpc automated addition for args_oap |
args_oap, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, diamond, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl |
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GITHUB
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quay.io/biocontainers/argutils |
shpc-registry automated BioContainers addition for argutils |
2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/aria2 |
shpc-registry automated BioContainers addition for aria2 |
aria2c |
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GITHUB
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quay.io/biocontainers/ariba |
shpc-registry automated BioContainers addition for ariba |
ariba, bwa-spades, corrector, dipspades, dipspades.py, hammer, ionhammer, scaffold_correction, spades, fastaq, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div, cd-hit-div.pl, cd-hit-est-2d, cd-hit-para.pl, clstr2tree.pl |
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GITHUB
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quay.io/biocontainers/array-as-vcf |
shpc-registry automated BioContainers addition for array-as-vcf |
aav, array-as-vcf, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/arriba |
shpc-registry automated BioContainers addition for arriba |
arriba, convert_fusions_to_vcf.sh, draw_fusions.R, extract_fusion-supporting_alignments.sh, quantify_virus_expression.sh, run_arriba.sh, run_arriba_on_prealigned_bam.sh, STAR, STARlong, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long |
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GITHUB
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quay.io/biocontainers/arrow |
shpc-registry automated BioContainers addition for arrow |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/art |
shpc-registry automated BioContainers addition for art |
art_454, art_SOLiD, art_illumina |
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GITHUB
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quay.io/biocontainers/artemis |
shpc-registry automated BioContainers addition for artemis |
act, art, bamview, dnaplotter, writedb_entry, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/artic-porechop |
shpc-registry automated BioContainers addition for artic-porechop |
porechop, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
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quay.io/biocontainers/artic-tools |
shpc-registry automated BioContainers addition for artic-tools |
artic-tools, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/artic |
shpc-registry automated BioContainers addition for artic |
align_trim, align_trim_n, artic, artic-tools, artic_fasta_header, artic_get_stats, artic_make_depth_mask, artic_mask, artic_vcf_filter, artic_vcf_merge, check_compression, compress_fast5, demux_fast5, fast5_subset, hdf2tf.py, longshot, margin_cons, margin_cons_medaka, medaka, medaka_consensus, medaka_counts, medaka_data_path, medaka_haploid_variant, medaka_version_report, mini_align, multi_to_single_fast5, nanopolish, nanopolish_makerange.py, nanopolish_merge.py, porechop, rich-click, single_to_multi_fast5, vcfextract, whatshap, multiqc, minimap2.py, racon, rampler, racon_wrapper, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin |
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GITHUB
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quay.io/biocontainers/arvados-cli |
shpc-registry automated BioContainers addition for arvados-cli |
arv, arv-crunch-job, arv-run-pipeline-instance, arv-tag, google-api, launchy, erb, gem, irb, rake, rdoc, ri, ruby, easy_install-3.5, 2to3-3.5, idle3.5 |
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GITHUB
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quay.io/biocontainers/arvados-cwl-runner |
shpc-registry automated BioContainers addition for arvados-cwl-runner |
arv-copy, arv-federation-migrate, arv-get, arv-keepdocker, arv-ls, arv-migrate-docker19, arv-normalize, arv-put, arv-ws, arvados-cwl-runner, bagit.py, cwl-runner, prov-compare, prov-convert, cwltool, schema-salad-doc, schema-salad-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, doesitcache, coloredlogs |
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GITHUB
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quay.io/biocontainers/arvados-python-client |
shpc-registry automated BioContainers addition for arvados-python-client |
arv-copy, arv-federation-migrate, arv-get, arv-keepdocker, arv-ls, arv-migrate-docker19, arv-normalize, arv-put, arv-ws, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, futurize, pasteurize, 2to3-3.8, idle3.8 |
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GITHUB
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quay.io/biocontainers/ascat |
shpc-registry automated BioContainers addition for ascat |
|
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GITHUB
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quay.io/biocontainers/asciigenome |
shpc-registry automated BioContainers addition for asciigenome |
ASCIIGenome, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/asgal |
singularity registry hpc automated addition for asgal |
SpliceAwareAligner, asgal, asgal_BitVector.py, asgal_SplicingGraph.py, asgal_detectEvents.py, asgal_formatSAM.py, asgal_utils.py, dimacs-solver, dimacs-to-lgf, lemon-0.x-to-1.x.sh, lgf-gen, salmon, gffutils-cli, cbc, clp, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, fasta-sanitize.pl, plot-ampliconstats, f2py3.10, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite |
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GITHUB
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quay.io/biocontainers/ashlar |
singularity registry hpc automated addition for ashlar |
aomdec, aomenc, ashlar, dav1d, make_alignment_movie, preview_slide, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, aec, imageio_download_bin, imageio_remove_bin, skivi, fitscopy, fpack, funpack, imcopy, smem, cups-config, ippeveprinter, ipptool, fonttools, pyftmerge, pyftsubset |
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GITHUB
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quay.io/biocontainers/ashleys-qc |
singularity registry hpc automated addition for ashleys-qc |
ashleys, py.test, pytest, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/askocli |
shpc-registry automated BioContainers addition for askocli |
askocli, chardetect, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/asn2gb |
shpc-registry automated BioContainers addition for asn2gb |
asn2gb, idn |
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GITHUB
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quay.io/biocontainers/aspera-cli |
singularity registry hpc automated addition for aspera-cli |
ascli, ascp, asession, aspera-license, rbs, rdbg, typeprof, racc, bundle, bundler, gdbm_dump, gdbm_load, gdbmtool, erb, gem, irb, rake, rdoc, ri, ruby |
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GITHUB
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quay.io/biocontainers/asqcan |
shpc-registry automated BioContainers addition for asqcan |
asqcan, blobtools, blobtools-build_nodesdb, icarus.py, metaquast, metaquast.py, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, circos, circos.exe, compile.bat, compile.make, gddiag, glimmerhmm, glimmhmm.pl, list.modules, test.modules, trainGlimmerHMM |
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GITHUB
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quay.io/biocontainers/assemblerflow |
shpc-registry automated BioContainers addition for assemblerflow |
assemblerflow, nextflow, nextflow.bak, giffilter, gifsponge, gifecho, gifinto, basenc, b2sum, base32, base64, basename, cat |
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GITHUB
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quay.io/biocontainers/assembly-scan |
shpc-registry automated BioContainers addition for assembly-scan |
assembly-scan, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/assembly-stats |
shpc-registry automated BioContainers addition for assembly-stats |
assembly-stats |
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GITHUB
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quay.io/biocontainers/assembly_finder |
singularity registry hpc automated addition for assembly_finder |
ascli, ascp, asession, aspera-license, assembly_finder, rbs, rdbg, typeprof, racc, bundle, bundler, mpg123, mpg123-id3dump, mpg123-strip, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, libgcrypt-config, mpicalc, yat2m, gdbm_dump, gdbm_load, gdbmtool, lame, erb, gem, irb, rake, rdoc, ri, ruby |
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GITHUB
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quay.io/biocontainers/assemblycomparator2 |
singularity registry hpc automated addition for assemblycomparator2 |
asscom2, bsdunzip, eido, jsondiff, jsonpatch, jsonpointer, protoc-24.3.0, mamba-package, conda2solv, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, bsdcat, bsdcpio, bsdtar, conda-env, cph, markdown-it, stone, yte, plac_runner.py, docutils, pulptest, cbc, clp, humanfriendly, snakemake, snakemake-bash-completion, jp.py |
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GITHUB
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quay.io/biocontainers/assemblytics |
shpc-registry automated BioContainers addition for assemblytics |
Assemblytics, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot |
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GITHUB
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quay.io/biocontainers/astalavista |
shpc-registry automated BioContainers addition for astalavista |
astalavista, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/aster |
singularity registry hpc automated addition for aster |
asterisk, astral, astral-pro |
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GITHUB
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quay.io/biocontainers/astral-tree |
singularity registry hpc automated addition for astral-tree |
astral, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs, pack200, rmic, rmid, unpack200, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo |
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GITHUB
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quay.io/biocontainers/astropy |
shpc-registry automated BioContainers addition for astropy |
fits2bitmap, fitscheck, fitsdiff, fitsheader, fitsinfo, samp_hub, showtable, volint, wcslint, py.test, pytest, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7 |
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GITHUB
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quay.io/biocontainers/atactk |
shpc-registry automated BioContainers addition for atactk |
make_cut_matrix, make_midpoint_matrix, measure_features, measure_signal, plot_aggregate_cut_matrix.R, plot_aggregate_midpoint_matrix.R, plot_signal.R, trim_adapters, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, x86_64-conda-linux-gnu-gfortran.bin, pyvenv |
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GITHUB
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quay.io/biocontainers/ataqv |
shpc-registry automated BioContainers addition for ataqv |
ataqv, mkarv, srvarv, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
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GITHUB
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quay.io/biocontainers/athena_meta |
shpc-registry automated BioContainers addition for athena_meta |
Makefile, Makefile.am, Makefile.in, athena-meta, bazel-scan.py, fa2fq, fa2fq.o, filter_blat, filter_blat.o, filter_contigs, filter_contigs.o, filterfa, filterfa.o, flye, flye-assemble, flye-minimap2, flye-polish, flye-repeat, fq2fa, fq2fa.o, idba, idba.o, idba_hybrid, idba_hybrid.o, idba_subasm, idba_subasm.o, idba_tran, idba_tran.o, idba_tran_test, idba_tran_test.o, idba_ud, idba_ud.o, ipcluster, ipcontroller, ipengine, iptest2, ipython2, parallel_blat, parallel_blat.o, parallel_rna_blat, parallel_rna_blat.o, print_graph, print_graph.o, raw_n50, raw_n50.o, run-unittest.py, sample_reads, sample_reads.o, scaffold, scaffold.o, scan.py, shuffle_reads, shuffle_reads.o, sim_reads, sim_reads.o, sim_reads_tran, sim_reads_tran.o, sort_psl, sort_psl.o, sort_reads, sort_reads.o, split_fa, split_fa.o, split_fq, split_fq.o, split_scaffold, split_scaffold.o, test.o, validate_blat, validate_blat_parallel, validate_blat_parallel_local, validate_blat_parallel_rna, validate_component, validate_component.o, validate_contigs_blat, validate_contigs_blat.o, validate_contigs_mummer, validate_contigs_mummer.o, validate_mummer, validate_reads_blat, validate_reads_blat.o, validate_rna, validate_rna.o, jupyter-kernel, jupyter-kernelspec, jupyter-run, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py |
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GITHUB
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quay.io/biocontainers/atlas-data-import |
shpc-registry automated BioContainers addition for atlas-data-import |
data_import_post_install_tests.bats, data_import_post_install_tests.sh, get_experiment_data.R, import_classification_data.R, metadata_conda_debug.yaml, build_env_setup.sh, conda_build.sh, x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/atlas-fastq-provider |
shpc-registry automated BioContainers addition for atlas-fastq-provider |
abi-dump.2.11.0, abi-load, abi-load.2, abi-load.2.11.0, align-cache.2.11.0, align-info.2.11.0, atlas-fastq-provider-config.sh, atlas-fastq-provider-functions.sh, atlas-fastq-provider-post-install-tests.sh, bam-load.2.11.0, bam2fastq, bam_add_tags, bam_annotate.sh, bam_umi_count, bash, bashbug, cache-mgr.2.11.0, ccextract, ccextract.2, ccextract.2.11.0, cg-load.2.11.0, deinterleave_fastq.sh, fasterq-dump-orig.2.11.0, fasterq-dump.2.11.0, fastq-dump-orig.2.11.0, fastq-dump.2.11.0, fastq-load, fastq-load.2, fastq-load.2.11.0, fastq2bam, fastq_filter_n, fastq_filterpair, fastq_info, fastq_not_empty, fastq_num_reads, fastq_pre_barcodes, fastq_split_interleaved, fastq_tests, fastq_trim_poly_at, fastq_truncate, fastq_validator.sh, fetchEnaLibraryFastqs.sh, fetchFastq.sh, helicos-load, helicos-load.2, helicos-load.2.11.0, illumina-dump.2.11.0, illumina-load, illumina-load.2, illumina-load.2.11.0, initialiseEnaProbe.sh, kar.2.11.0, kdbmeta.2.11.0, kget.2.11.0, latf-load.2.11.0, md5cp.2.11.0, pacbio-load, pacbio-load.2, pacbio-load.2.11.0, pacbio-loadxml, pacbio-loadxml.2, pacbio-loadxml.2.11.0, prefetch-orig.2.11.0, prefetch.2.11.0, rcexplain.2.11.0, read-filter-redact.2.11.0, sam-dump-orig.2.11.0, sam-dump.2.11.0, sff-dump.2.11.0, sff-load, sff-load.2, sff-load.2.11.0, sra-pileup-orig.2.11.0, sra-pileup.2.11.0, sra-sort-cg.2.11.0, sra-sort.2.11.0, sra-stat.2.11.0, srapath-orig.2.11.0, srapath.2.11.0, sratools.2.11.0, srf-load, srf-load.2, srf-load.2.11.0, test-sra.2.11.0, validateUri.sh, vdb-config.2.11.0, vdb-copy.2.11.0, vdb-decrypt.2.11.0, vdb-diff.2.11.0, vdb-dump-orig.2.11.0, vdb-dump.2.11.0, vdb-encrypt.2.11.0, vdb-lock.2.11.0, vdb-passwd.2.11.0, vdb-unlock.2.11.0, vdb-validate.2.11.0, align-cache.2, md5cp.2, read-filter-redact.2, sra-sort-cg.2, vdb-diff.2, align-cache, fasterq-dump-orig, fastq-dump-orig, md5cp, prefetch-orig |
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GITHUB
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quay.io/biocontainers/atlas-gene-annotation-manipulation |
shpc-registry automated BioContainers addition for atlas-gene-annotation-manipulation |
gtf2featureAnnotation.R |
|
GITHUB
|
quay.io/biocontainers/atlas-metadata-validator |
shpc-registry automated BioContainers addition for atlas-metadata-validator |
atlas_validation.py, chardetect, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/atlas |
shpc-registry automated BioContainers addition for atlas |
atlas |
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GITHUB
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quay.io/biocontainers/atropos |
shpc-registry automated BioContainers addition for atropos |
atropos, tqdm, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/attotree |
singularity registry hpc automated addition for attotree |
attotree, quicktree, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/augur |
shpc-registry automated BioContainers addition for augur |
augur, dsdp5, treetime, vcftools, iqtree, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, FastTree-2.1.10.c, FastTreeMP, cmpfillin |
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GITHUB
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quay.io/biocontainers/augustus |
shpc-registry automated BioContainers addition for augustus |
PF00225_full.blocks.txt, PF00225_seed.blocks.txt, SplicedAlignment.pm, aa2nonred.pl, add_name_to_gff3.pl, aln2wig, augustify.py, augustus, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, bam2wig, bamToWig.py, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, cdbfasta, cdbyank, cegma2gff.pl, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, compare_masking.pl, compileSpliceCands, computeFlankingRegion.pl, createAugustusJoblist.pl, del_from_prfl.pl, evalCGP.pl, eval_dualdecomp.pl, eval_multi_gtf.pl, executeTestCGP.py, exonerate2hints.pl, exoniphyDb2hints.pl, extractAnno.py, extractTranscriptEnds.pl, filter-ppx.pl, filterGenes.pl, filterGenesIn.pl, filterGenesIn_mRNAname.pl, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, findGffNamesInFasta.pl, findRepetitiveProtSeqs.py, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, getAnnoFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, getSeq, get_loci_from_gb.pl, gff2gbSmallDNA.pl, gff2ps_mycustom, gffGetmRNA.pl, gp2othergp.pl, gtf2aa.pl, gtf2gff.pl, gth2gtf.pl, hal2maf_split.pl, helpMod.pm, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, load2sqlitedb, lp_solve, maf2conswig.pl, makeMatchLists.pl, makeUtrTrainingSet.pl, maskNregions.pl, merge_masking.pl, moveParameters.pl, msa2prfl.pl, new_species.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, peptides2alternatives.pl, peptides2hints.pl, phastconsDB2hints.pl, polyA2hints.pl, pp_simScore, prints2prfl.pl, pslMap.pl, randomSplit.pl, rename_species.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, samMap.pl, scipiogff2gff.pl, setStopCodonFreqs.pl, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, splitMfasta.pl, split_wiggle.pl, stringtie2fa.py, summarizeACGTcontent.pl, transMap2hints.pl, uniquePeptides.pl, utrgff2gbrowse.pl, utrrnaseq, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, yaml2gff.1.4.pl, bam2hints, etraining, fastBlockSearch, filterBam, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign, twoBitInfo, faToTwoBit |
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GITHUB
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quay.io/biocontainers/auriclass |
singularity registry hpc automated addition for auriclass |
auriclass, dmypy, mypy, mypyc, stubgen, stubtest, pyfastx, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, py.test, pytest, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/auspice |
shpc-registry automated BioContainers addition for auspice |
auspice, corepack, node, npm, npx |
|
GITHUB
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quay.io/biocontainers/authentict |
singularity registry hpc automated addition for authentict |
AuthentiCT, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, normalizer, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl |
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GITHUB
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quay.io/biocontainers/autodock-vina |
shpc-registry automated BioContainers addition for autodock-vina |
vina, vina_split |
|
GITHUB
|
quay.io/biocontainers/autodock |
shpc-registry automated BioContainers addition for autodock |
autodock4, autodock4.omp |
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GITHUB
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quay.io/biocontainers/autogenes |
shpc-registry automated BioContainers addition for autogenes |
get_objgraph, undill, natsort, mirror_server, mirror_server_stop, f2py3.9, opj_compress, opj_decompress, opj_dump, h5clear |
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GITHUB
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quay.io/biocontainers/autogrid |
singularity registry hpc automated addition for autogrid |
autogrid4 |
|
GITHUB
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quay.io/biocontainers/autolog |
shpc-registry automated BioContainers addition for autolog |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
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quay.io/biocontainers/automappa |
singularity registry hpc automated addition for automappa |
automappa, autometa-bedtools-genomecov, autometa-benchmark, autometa-binning, autometa-binning-ldm, autometa-binning-ldm-loginfo, autometa-binning-summary, autometa-config, autometa-coverage, autometa-download-dataset, autometa-hmmsearch-filter, autometa-kmers, autometa-length-filter, autometa-markers, autometa-orfs, autometa-taxonomy, autometa-taxonomy-lca, autometa-taxonomy-majority-vote, autometa-unclustered-recruitment, autometa-update-databases, dash-generate-components, dash-update-components, editorconfig, gdown, js-beautify, renderer, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, doesitcache, flask, diamond, ipython3, parsort, ipython, cygdb, cython, cythonize, numba, pycc, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh |
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GITHUB
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quay.io/biocontainers/autometa |
shpc-registry automated BioContainers addition for autometa |
autometa, autometa-bedtools-genomecov, autometa-benchmark, autometa-binning, autometa-binning-ldm, autometa-binning-ldm-loginfo, autometa-binning-summary, autometa-config, autometa-coverage, autometa-download-dataset, autometa-hmmsearch-filter, autometa-kmers, autometa-length-filter, autometa-markers, autometa-orfs, autometa-taxonomy, autometa-taxonomy-lca, autometa-taxonomy-majority-vote, autometa-unclustered-recruitment, autometa-update-databases, gdown, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, doesitcache, ipython3, diamond, parsort |
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GITHUB
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quay.io/biocontainers/aviary |
singularity registry hpc automated addition for aviary |
Xcalcmem.sh, aviary, bloomfilterparser.sh, bsdcat, bsdcpio, bsdtar, conda2solv, dumpsolv, installcheck, mamba, mamba-package, mergesolv, repo2solv, testsolv, kmutate.sh, runhmm.sh, stone, conda-env, cph, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, plac_runner.py, sketchblacklist2.sh, splitribo.sh, yte, addssu.sh, adjusthomopolymers.sh, analyzeaccession.sh, analyzegenes.sh, applyvariants.sh, bbcms.sh, bloomfilter.sh, callgenes.sh, comparegff.sh |
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GITHUB
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quay.io/biocontainers/avro-cwl |
shpc-registry automated BioContainers addition for avro-cwl |
avro, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/avro-python2 |
shpc-registry automated BioContainers addition for avro-python2 |
avro, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/avro-python3 |
shpc-registry automated BioContainers addition for avro-python3 |
avro, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/avro |
shpc-registry automated BioContainers addition for avro |
avro, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/awscli |
shpc-registry automated BioContainers addition for awscli |
aws, aws.cmd, aws_completer, aws_zsh_completer.sh, pyrsa-decrypt-bigfile, pyrsa-encrypt-bigfile, jp.py, easy_install-3.5, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify |
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GITHUB
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quay.io/biocontainers/axiome |
shpc-registry automated BioContainers addition for axiome |
axiome, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/b2b-utils |
singularity registry hpc automated addition for b2b-utils |
DrawGram.jar, DrawTree.jar, TMalign, TMscore, attr, balsam, bam2consensus, bgzip.pl, blast2diamond, boot2frac, bstats, bundle, bundler, clique, comppair, consense, contml, contrast, conus_compare, conus_train, dca, decode_sam_flag, dialign-tx, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, dollop, dolmove, dolpenny, drawgram, drawgram_gui, drawtree, drawtree_gui, dumpsexp, fakealigner, faketree, famsa, fasta2nexus, fasta2phylip, fasttreeMP, fitch, fq_deinterleave, fq_interleave, frag_lens, gb2fasta, gendist, getfattr, gpg-error, gpgrt-config, guess_ill_instrument, hmac256, hmmeralign, hmmerbuild, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, hyperopt-mongo-worker, jackd, kalign, kitsch, lame, libgcrypt-config, lprodump, lrelease-pro, lstopo, lstopo-no-graphics, lupdate-pro, make_pscores.pl, matplotlib, meshdebug, minimeta, mix, move, mpg123, mpg123-id3dump, mpg123-strip, mpicalc, mustang, ncbi_blast_update, neighbor, opal.jar, orc-bugreport, orcc, out123, pModel, pa-info, pacat, pacmd, pactl, padaligner, padsp, pamon, paplay, parec, parecord, pars, pasuspender, penny, phylip, poa, probcons, probconsRNA, proml, promlk, protdist, protpars, pulseaudio, qbin, qmlformat, qmltime, qmltyperegistrar, qpaeq, racc, randtree, raxml, raxmlp, rbs, rdbg, restdist, restml, retree, rm_chim, rm_gaps, run_pasta.py, run_pasta_gui.py, run_seqtools.py, sap, scompare, seq_diff, seqboot, setfattr, sfold, shrink_bedgraph, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, strain_ml, summarize_assembly, sync_reads, tracegen, treedist, typeprof, uc, yat2m, clustalo, flac, gdbm_dump, gdbm_load, gdbmtool, metaflac, prank, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, aec, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb |
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GITHUB
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quay.io/biocontainers/b2btools |
shpc-registry automated BioContainers addition for b2btools |
torchrun, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, protoc, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli |
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GITHUB
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quay.io/biocontainers/bacgwasim |
shpc-registry automated BioContainers addition for bacgwasim |
BacGWASim, SimBac, gcta64, plink, snp-sites, stone, dendropy-format, x86_64-conda-linux-gnu-pkg-config, pulptest, Magick++-config, MagickCore-config, MagickWand-config, animate, composite |
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GITHUB
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quay.io/biocontainers/backports.csv |
shpc-registry automated BioContainers addition for backports.csv |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/backports.unittest_mock |
shpc-registry automated BioContainers addition for backports.unittest_mock |
pbr, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config |
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GITHUB
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quay.io/biocontainers/backspinpy |
shpc-registry automated BioContainers addition for backspinpy |
backspin, futurize, pasteurize, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
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quay.io/biocontainers/bacphlip |
shpc-registry automated BioContainers addition for bacphlip |
bacphlip, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/bactopia-assembler |
singularity registry hpc automated addition for bactopia-assembler |
assembly-scan, bactopia-assembler, check_compression, compress_fast5, coronaspades.py, demux_fast5, dragonflye, fast5_subset, flye, flye-minimap2, flye-modules, flye-samtools, hdf2tf.py, lighter, medaka, medaka_consensus, medaka_counts, medaka_data_path, medaka_haploid_variant, medaka_version_report, metaplasmidspades.py, metaviralspades.py, mini_align, miniasm, minidot, multi_to_single_fast5, nanoq, polypolish, polypolish_insert_filter.pxd, polypolish_insert_filter.py, porechop, rasusa, raven, rnaviralspades.py, shovill, shovill-se, single_to_multi_fast5, skesa, unicycler, whatshap, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, fastp, flash, megahit, megahit_toolkit, pilon, minimap2.py, samclip, velvetg, velveth, any2fasta, kmc, kmc_dump, kmc_tools, racon, rampler, racon_wrapper, estimator_ckpt_converter, docutils, cds-mapping-stats, cds-subgraphs, google-oauthlib-tool, mag-improve |
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GITHUB
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quay.io/biocontainers/bactopia-gather |
singularity registry hpc automated addition for bactopia-gather |
Xcalcmem.sh, abi-dump.3, abi-dump.3.0.3, align-info.3, align-info.3.0.3, aln2bed.pl, art_454, art_SOLiD, art_illumina, art_profiler_454, art_profiler_illumina, bactopia-gather, bloomfilterparser.sh, cache-mgr.3, cache-mgr.3.0.3, check-assembly-accession.py, check-corrupt, check-corrupt.3, check-corrupt.3.0.3, check-fastqs.py, combinedAvg.pl, empDist.pl, executor, fasterq-dump-orig.3.0.3, fasterq-dump.3, fasterq-dump.3.0.3, fastq-dl, fastq-dump-orig.3.0.3, fastq-dump.3, fastq-dump.3.0.3, fastq-scan, fastqReadAvg.pl, gimme_taxa.py, illumina-dump.3, illumina-dump.3.0.3, kdbmeta.3, kdbmeta.3.0.3, map2bed.pl, markdown-it, ncbi-genome-download, ngd, ngs-pileup, ngs-pileup.3, ngs-pileup.3.0.3, prefetch-orig.3.0.3, prefetch.3, prefetch.3.0.3, pysradb, rcexplain.3, rcexplain.3.0.3, ref-variation, ref-variation.3, ref-variation.3.0.3, rich-click, sam-dump-orig.3.0.3, sam-dump.3, sam-dump.3.0.3, sff-dump.3, sff-dump.3.0.3, sra-pileup-orig.3.0.3, sra-pileup.3, sra-pileup.3.0.3, sra-search, sra-search.3, sra-search.3.0.3, sra-stat.3, sra-stat.3.0.3, srapath-orig.3.0.3, srapath.3, srapath.3.0.3, sratools.3, sratools.3.0.3, summation.pl, test-sra.3, test-sra.3.0.3, var-expand, var-expand.3, var-expand.3.0.3, vdb-config.3, vdb-config.3.0.3, vdb-decrypt.3, vdb-decrypt.3.0.3, vdb-dump-orig.3.0.3, vdb-dump.3, vdb-dump.3.0.3, vdb-encrypt.3, vdb-encrypt.3.0.3, vdb-validate.3, vdb-validate.3.0.3, kmutate.sh, runhmm.sh, fasterq-dump-orig, fastq-dump-orig, prefetch-orig, sam-dump-orig, sra-pileup-orig, srapath-orig, kmerposition.sh, reformatpb.sh, sratools, summarizecoverage.sh, uuid, uuid-config, abi-dump, align-info, alltoall.sh, analyzesketchresults.sh, cache-mgr, comparessu.sh, fasterq-dump, fastq-dump, filtersilva.sh, illumina-dump, kdbmeta |
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GITHUB
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quay.io/biocontainers/bactopia-py |
singularity registry hpc automated addition for bactopia-py |
bactopia-citations, bactopia-download, bactopia-prepare, bactopia-search, bactopia-summary, executor, markdown-it, pysradb, rich-click, f2py3.11, coloredlogs, humanfriendly, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, pygmentize, xslt-config, xsltproc, tqdm, normalizer, python3.1 |
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GITHUB
|
quay.io/biocontainers/bactopia-qc |
singularity registry hpc automated addition for bactopia-qc |
NanoPlot, Xcalcmem.sh, bactopia-qc, bloomfilterparser.sh, check-fastqs.py, csv-import, elasticurl, elasticurl_cpp, elastipubsub, fastq-scan, kaleido, lighter, mathjax-path, nanoq, orc-memory, orc-scan, porechop, produce_x_platform_fuzz_corpus, rasusa, run_x_platform_fuzz_corpus, timezone-dump, kmutate.sh, runhmm.sh, fastp, kmerposition.sh, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, reformatpb.sh, sha256_profile, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, rename, sketchblacklist2.sh, splitribo.sh, addssu.sh, adjusthomopolymers.sh, analyzeaccession.sh, analyzegenes.sh, applyvariants.sh, bbcms.sh |
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GITHUB
|
quay.io/biocontainers/bactopia-sketcher |
singularity registry hpc automated addition for bactopia-sketcher |
bactopia-sketcher, sourmash, screed, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd, df |
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GITHUB
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quay.io/biocontainers/bactopia-teton |
singularity registry hpc automated addition for bactopia-teton |
alpha_diversity.py, bactopia-teton, beta_diversity.py, bracken, bracken-build, combine_bracken_outputs.py, combine_kreports.py, combine_mpa.py, est_abundance.py, extract_kraken_reads.py, fastq-scan, filter_bracken.out.py, fix_unmapped.py, generate_kmer_distribution.py, kmer2read_distr, kraken-bracken-summary.py, kraken2, kraken2-build, kraken2-inspect, kreport2krona.py, kreport2mpa.py, ktClassifyHits, ktImportHits, make_kreport.py, make_ktaxonomy.py, rsync-ssl, ktClassifyBLAST, ktGetContigMagnitudes, ktGetLCA, ktGetLibPath, ktGetTaxIDFromAcc, ktGetTaxInfo, ktImportBLAST, ktImportDiskUsage, ktImportEC, ktImportFCP, ktImportGalaxy, ktImportKrona, ktImportMETAREP-BLAST, ktImportMETAREP-EC, ktImportMGRAST, ktImportPhymmBL, ktImportRDP, ktImportRDPComparison, ktImportTaxonomy, ktImportText, ktImportXML, ktUpdateTaxonomy.sh, rsync, xxh128sum |
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GITHUB
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quay.io/biocontainers/bactopia-variants |
singularity registry hpc automated addition for bactopia-variants |
RNAmultifold, TMalign, bactopia-variants, cleanup-coverage.py, make_pscores.pl, mask-consensus.py, poa, sam_add_rg.pl, snippy, snippy-clean_full_aln, snippy-core, snippy-multi, snippy-vcf_extract_subs, snippy-vcf_report, snippy-vcf_to_tab, split_ref_by_bai_datasize.py, update_version.sh, vcf-annotator, snp-sites, clustalo, vt, rename, tabix++, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb, impala, makemat, megablast, samclip, any2fasta, snpEff, bamleftalign, bc, coverage_to_regions.py, dc, fasta_generate_regions.py, freebayes-parallel |
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GITHUB
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quay.io/biocontainers/bactopia |
shpc-registry automated BioContainers addition for bactopia |
amr_report, amrfinder, amrfinder_update, ariba, bactopia, bactopia-citations.py, bactopia-datasets.py, bactopia-download.py, bactopia-prepare.py, bactopia-search.py, bsdcat, bsdcpio, bsdtar, check-assembly-accession.py, check-fastqs.py, cleanup-coverage.py, conda2solv, dna_mutation, dumpsolv, executor, fasta2parts, fasta_check, fasta_extract, gff_check, gimme_taxa.py, installcheck, mamba, mamba-package, mask-consensus.py, merge-blast-json.py, mergesolv, mlst-blast.py, ncbi-genome-download, nextflow, nextflow.bak, ngd, repo2solv, select-references.py, split-coverages.py, staphopia, testsolv, conda-env, cph, fastaq, funzip, unzipsfx, zipgrep, zipinfo, FET.pl, cd-hit-clstr_2_blm8.pl, cds-mapping-stats |
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GITHUB
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quay.io/biocontainers/badread |
shpc-registry automated BioContainers addition for badread |
badread, edlib-aligner, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc |
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GITHUB
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quay.io/biocontainers/baitfisher |
shpc-registry automated BioContainers addition for baitfisher |
BaitFilter, BaitFisher |
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GITHUB
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quay.io/biocontainers/bakdrive |
shpc-registry automated BioContainers addition for bakdrive |
bakdrive, httpx, isympy, cmark, pulptest, cbc, clp, glpsol, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py |
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GITHUB
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quay.io/biocontainers/bakta |
shpc-registry automated BioContainers addition for bakta |
EukHighConfidenceFilter, amr_report, amrfinder, amrfinder_update, bakta, bakta_db, bakta_proteins, covels-SE, coves-SE, dna_mutation, eufindtRNA, fasta2gsi, fasta2parts, fasta_check, fasta_extract, gff_check, pilercr, sstofa, tRNAscan-SE, tRNAscan-SE.conf, trnascan-1.4, aragorn, igzip, pbunzip2, pbzcat, pbzip2, cmalign, cmbuild, cmcalibrate, cmconvert, cmemit |
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GITHUB
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quay.io/biocontainers/bali-phy |
shpc-registry automated BioContainers addition for bali-phy |
alignment-cat, alignment-chop-internal, alignment-compare, alignment-consensus, alignment-convert, alignment-distances, alignment-draw, alignment-find, alignment-find-conserved, alignment-gild, alignment-identity, alignment-indices, alignment-info, alignment-max, alignment-smc, alignment-thin, alignment-translate, alignments-diff, bali-phy, bali-phy-pkg, bali-subsample, bp-analyze, cut-range, draw-graph, draw-tree, extract-ancestors, joint-indels, joint-parsimony, mctree-mean-lengths, model_P, partitions-supported, path-graph, pickout, statreport, stats-cat, stats-merge, stats-select, summarize-ancestors, tree-mean-lengths, tree-partitions, tree-reroot, tree-tool, trees-bootstrap, trees-consensus, trees-distances, trees-pair-distances, trees-to-SRQ, chrpath, gnuplot, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config |
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GITHUB
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quay.io/biocontainers/balrog |
shpc-registry automated BioContainers addition for balrog |
balrog, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/baltic |
shpc-registry automated BioContainers addition for baltic |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc |
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GITHUB
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quay.io/biocontainers/bam-readcount |
shpc-registry automated BioContainers addition for bam-readcount |
bam-readcount, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, perl5.26.2, podselect |
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GITHUB
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quay.io/biocontainers/bam2fasta |
shpc-registry automated BioContainers addition for bam2fasta |
bam2fasta, pathos_connect, portpicker, pox, ppserver, screed, get_objgraph, undill, tqdm, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/bam2fastx |
shpc-registry automated BioContainers addition for bam2fastx |
bam2fasta, bam2fastq, bam2sam, ccs-kinetics-bystrandify, pbbamify, pbindex, pbindexdump, pbmerge, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/bamaddrg |
shpc-registry automated BioContainers addition for bamaddrg |
bamaddrg |
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GITHUB
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quay.io/biocontainers/bamaligncleaner |
shpc-registry automated BioContainers addition for bamaligncleaner |
bamAlignCleaner, tqdm, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/bambamc |
shpc-registry automated BioContainers addition for bambamc |
|
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GITHUB
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quay.io/biocontainers/bamclipper |
shpc-registry automated BioContainers addition for bamclipper |
bamclipper.sh, clipprimer.pl, injectseparator.pl, parsort, perl5.32.0, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh |
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GITHUB
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quay.io/biocontainers/bamcmp |
shpc-registry automated BioContainers addition for bamcmp |
bamcmp, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/bamdash |
singularity registry hpc automated addition for bamdash |
bamdash, kaleido, mathjax-path, certutil, nspr-config, nss-config, pk12util, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/bamhash |
shpc-registry automated BioContainers addition for bamhash |
bamhash_checksum_bam, bamhash_checksum_fasta, bamhash_checksum_fastq |
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GITHUB
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quay.io/biocontainers/bamkit |
shpc-registry automated BioContainers addition for bamkit |
bamcleanheader.py, bamfilterrg.py, bamgroupreads.py, bamheadrg.py, bamlibs.py, bamtofastq.py, sectosupp, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/bamm |
shpc-registry automated BioContainers addition for bamm |
bamFlags, bamm, perl5.32.0, qualfa2fq.pl, xa2multi.pl, bwa, f2py2, f2py2.7, fasta-sanitize.pl, plot-ampliconstats, python2-config, python2.7-config |
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GITHUB
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quay.io/biocontainers/bamr |
shpc-registry automated BioContainers addition for bamr |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/bamread |
shpc-registry automated BioContainers addition for bamread |
bamread, natsort, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7 |
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GITHUB
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quay.io/biocontainers/bamscale |
shpc-registry automated BioContainers addition for bamscale |
BAMscale, htsfile, bgzip, tabix |
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GITHUB
|
quay.io/biocontainers/bamsnap |
shpc-registry automated BioContainers addition for bamsnap |
bamsnap, faidx, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, jpgicc |
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GITHUB
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quay.io/biocontainers/bamstats |
singularity registry hpc automated addition for bamstats |
bamstats |
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GITHUB
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quay.io/biocontainers/bamsurgeon |
singularity registry hpc automated addition for bamsurgeon |
addindel.py, addsnv.py, addsv.py, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, esd2esi, exonerate, exonerate-server, fasta2esd, fastaannotatecdna, fastachecksum, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasubseq, fastatranslate, fastavalidcds, ipcress |
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GITHUB
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quay.io/biocontainers/bamtocov |
shpc-registry automated BioContainers addition for bamtocov |
average-coverage.py, bamcountrefs, bamtarget, bamtocounts, bamtocov, comparecounts.py, covToWig.py, covtotarget, feat-counts.py, gff2bed.py, low-cov-multisample.py, make-target-from-bam.py, prokka-annotation-refupdate.py, strip-seq-from-bam.py, gff2bed, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/bamtools |
shpc-registry automated BioContainers addition for bamtools |
bamtools |
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GITHUB
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quay.io/biocontainers/bamutil |
shpc-registry automated BioContainers addition for bamutil |
bam |
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GITHUB
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quay.io/biocontainers/bandage |
shpc-registry automated BioContainers addition for bandage |
|
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GITHUB
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quay.io/biocontainers/banner |
shpc-registry automated BioContainers addition for banner |
banner, conv-template, from-template, py.test, pytest, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m |
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GITHUB
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quay.io/biocontainers/barcode_splitter |
shpc-registry automated BioContainers addition for barcode_splitter |
barcode_splitter, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/baredsc |
shpc-registry automated BioContainers addition for baredsc |
baredSC_1d, baredSC_2d, combineMultipleModels_1d, combineMultipleModels_2d, nc3tonc4, nc4tonc3, ncinfo, zipcmp, zipmerge, ziptool, natsort, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8 |
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GITHUB
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quay.io/biocontainers/barriers |
shpc-registry automated BioContainers addition for barriers |
barriers, crossrates.pl, fix_bar.pl, genPoHoLandscape, saddle.pl, saddle2dot.pl, saddle2gml.pl, treeplot.pl, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold |
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GITHUB
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quay.io/biocontainers/barrnap-python |
shpc-registry automated BioContainers addition for barrnap-python |
barrnap.py, barrnap, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct |
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GITHUB
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quay.io/biocontainers/barrnap |
shpc-registry automated BioContainers addition for barrnap |
barrnap, perl5.32.0, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev |
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GITHUB
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quay.io/biocontainers/barseqcount |
singularity registry hpc automated addition for barseqcount |
barseqcount, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/bart |
singularity registry hpc automated addition for bart |
bart, bart-profile, bart-update, kma, kma_index, kma_shm, kma_update, refseq_masher, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/basenji |
shpc-registry automated BioContainers addition for basenji |
akita_data.py, akita_data_read.py, akita_data_write.py, akita_predict.py, akita_sat_plot.py, akita_sat_vcf.py, akita_scd.py, akita_scd_multi.py, akita_test.py, akita_train.py, bam_cov.py, basenji_annot_chr.py, basenji_bench_classify.py, basenji_bench_gtex.py, basenji_bench_gtex_cmp.py, basenji_bench_phylop.py, basenji_bench_phylop_folds.py, basenji_cmp.py, basenji_data.py, basenji_data2.py, basenji_data_align.py, basenji_data_gene.py, basenji_data_hic_read.py, basenji_data_hic_write.py, basenji_data_read.py, basenji_data_write.py, basenji_fetch_app.py, basenji_fetch_app1.py, basenji_fetch_app2.py, basenji_fetch_norm.py, basenji_fetch_vcf.py, basenji_gtex_folds.py, basenji_hdf5_genes.py, basenji_hidden.py, basenji_map.py, basenji_map_genes.py, basenji_map_seqs.py, basenji_motifs.py, basenji_motifs_denovo.py, basenji_norm_h5.py, basenji_predict.py, basenji_predict_bed.py, basenji_predict_bed_multi.py, basenji_sad.py, basenji_sad_multi.py, basenji_sad_norm.py, basenji_sad_ref.py, basenji_sad_ref_multi.py, basenji_sad_table.py, basenji_sat_bed.py, basenji_sat_bed_multi.py, basenji_sat_folds.py, basenji_sat_plot.py, basenji_sat_plot2.py, basenji_sat_vcf.py, basenji_sed.py, basenji_sed_multi.py, basenji_sedg.py, basenji_test.py, basenji_test_folds.py, basenji_test_genes.py, basenji_test_reps.py, basenji_test_specificity.py, basenji_train.py, basenji_train1.py, basenji_train2.py, basenji_train_folds.py, basenji_train_hic.py, basenji_train_reps.py, cooltools, fits2bitmap, fitscheck, fitsdiff, fitsheader, fitsinfo, import_pb_to_tensorboard, samp_hub, save_model.py, showtable, sonnet_predict_bed.py, sonnet_sad.py, sonnet_sad_multi.py, sonnet_sat_bed.py, sonnet_sat_vcf.py, tfr_bw.py, tfr_hdf5.py, tfr_qc.py, upgrade_tf1.py, volint, wcslint, cooler, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix |
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GITHUB
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quay.io/biocontainers/basic |
shpc-registry automated BioContainers addition for basic |
BASIC.py, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, perl5.26.2 |
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GITHUB
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quay.io/biocontainers/batch_brb |
shpc-registry automated BioContainers addition for batch_brb |
accession_retrieve, adb01_check_db.py, adb02_add_alias_to_db.py, aliasdb_pipeline, alncut, alnpi, ar01_accret.py, bash, bashbug, batch_brb_functions.py, batch_brb_setup, batch_makeblastdb, del01_delete_db_entries.py, delete_db, fascodon, fascomp, fasconvert, fascut, fasfilter, fasgrep, fashead, faslen, faspaste, fasrc, fassort, fassub, fastail, fastax, fastaxsort, fastr, fasttree_pipeline, fasuniq, faswc, fasxl, ft01_extract_accessions.py, gbfalncut, gbfcut, mdb01_makeblastdb.sh, mdb02_convert_headers.py, mdb03_add_to_db.py, merge_results, or01_filter_hits.py, or02_find_orthologs.py, orthology_pipeline, show, seqkit, FastTree-2.1.10.c, FastTreeMP, muscle, FastTree, fasttree, CA.pm, cacert.pem, index-themes, fetch-extras |
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GITHUB
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quay.io/biocontainers/bats |
shpc-registry automated BioContainers addition for bats |
bats |
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GITHUB
|
quay.io/biocontainers/batvi |
shpc-registry automated BioContainers addition for batvi |
call_integrations.sh, cat_sorted_sam.sh, clean_run.sh, collate.sh, collate_from_file.sh, combine_hits.pl, commandline.sh, convert_to_fastq.sh, email.sh, extract_hbv_from_fasta.sh, extract_sam_xargs.sh, extract_unmapped_and_oneside.sh, extracthbv.sh, gen_paths.sh, get_blast_hits.sh, get_reads.pl, hbvblast.sh, join_sam.sh, manualcompile.sh, relabelunbugreads.sh, search_text.sh, sort_by_name.sh, unbug.pl, unbug.sh, unbug_xarg.sh, view_xargs.sh, build.sh, picard, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns |
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GITHUB
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quay.io/biocontainers/bax2bam |
shpc-registry automated BioContainers addition for bax2bam |
bam2sam, bax2bam, pbbamify, pbindex, pbindexdump, pbmerge, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff |
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GITHUB
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quay.io/biocontainers/bayesase |
shpc-registry automated BioContainers addition for bayesase |
bwa_split_sam_seonly_2output.py, calculate_priors_ase_count_tables.py, check_aln_design_file.py, check_comparate_design_file.py, check_lost_reads.py, check_sam_present.py, check_samcomp_lost_reads.py, combine_count_tables.py, merge_comparates_generate_bayesian_headers.py, merge_priors_to_comparate.py, nbmodel_stan2.py, sam_compare_w_feature.py, summarize_sam_compare_cnts_table_1cond.py, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin, c89, c99 |
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GITHUB
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quay.io/biocontainers/bayescan |
shpc-registry automated BioContainers addition for bayescan |
bayescan2 |
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GITHUB
|
quay.io/biocontainers/bayescode |
singularity registry hpc automated addition for bayescode |
attr, balsam, calibs_coevol_to_mutsel.py, esdcompat, fasta_to_ali.py, fitness_to_selcoeff.py, getfattr, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, lprodump, lrelease-pro, lupdate-pro, meshdebug, mutselomega, nodemutsel, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, plot_tree.py, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, readmutselomega, readnodemutsel, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, traits_coevol_to_mutsel.py, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, xml2-config.bak, ete3, xkbcli, db_convert, cups-config, ippeveprinter, ipptool, db_archive, db_checkpoint, db_deadlock, db_dump, db_hotbackup, db_load |
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GITHUB
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quay.io/biocontainers/bayestyper |
shpc-registry automated BioContainers addition for bayestyper |
bayesTyper, bayesTyperTools |
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GITHUB
|
quay.io/biocontainers/baypass |
singularity registry hpc automated addition for baypass |
g_baypass |
|
GITHUB
|
quay.io/biocontainers/bazam |
shpc-registry automated BioContainers addition for bazam |
bazam, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
|
quay.io/biocontainers/bbknn |
shpc-registry automated BioContainers addition for bbknn |
numba, pycc, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config |
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GITHUB
|
quay.io/biocontainers/bbmap |
shpc-registry automated BioContainers addition for bbmap |
a_sample_mt.sh, addadapters.sh, addssu.sh, adjusthomopolymers.sh, alltoall.sh, analyzeaccession.sh, analyzegenes.sh, analyzesketchresults.sh, applyvariants.sh, bbcms.sh, bbcountunique.sh, bbduk.sh, bbest.sh, bbfakereads.sh, bbmap.sh, bbmapskimmer.sh, bbmask.sh, bbmerge-auto.sh, bbmerge.sh, bbnorm.sh, bbrealign.sh, bbrename.sh, bbsketch.sh, bbsplit.sh, bbsplitpairs.sh, bbstats.sh, bbversion.sh, bbwrap.sh, bloomfilter.sh, build_env_setup.sh, calcmem.sh, calctruequality.sh, callgenes.sh, callpeaks.sh, callvariants.sh, callvariants2.sh, clumpify.sh, commonkmers.sh, comparegff.sh, comparesketch.sh, comparessu.sh, comparevcf.sh, conda_build.sh, consect.sh, consensus.sh, countbarcodes.sh, countgc.sh, countsharedlines.sh, crossblock.sh, crosscontaminate.sh, cutgff.sh, cutprimers.sh, decontaminate.sh, dedupe.sh, dedupe2.sh, dedupebymapping.sh, demuxbyname.sh, diskbench.sh, estherfilter.sh, explodetree.sh, fetchproks.sh, filterassemblysummary.sh, filterbarcodes.sh, filterbycoverage.sh, filterbyname.sh, filterbysequence.sh, filterbytaxa.sh, filterbytile.sh, filterlines.sh, filterqc.sh, filtersam.sh, filtersilva.sh, filtersubs.sh, filtervcf.sh, fixgaps.sh, fungalrelease.sh, fuse.sh, gbff2gff.sh, getreads.sh, gi2ancestors.sh, gi2taxid.sh, gitable.sh, grademerge.sh, gradesam.sh, icecreamfinder.sh, icecreamgrader.sh, icecreammaker.sh, idmatrix.sh, idtree.sh, invertkey.sh, kapastats.sh, kcompress.sh, keepbestcopy.sh, khist.sh, kmercountexact.sh, kmercountmulti.sh, kmercoverage.sh, kmerfilterset.sh, kmerlimit.sh, kmerlimit2.sh, kmerposition.sh, kmutate.sh, lilypad.sh, loadreads.sh, loglog.sh, makechimeras.sh, makecontaminatedgenomes.sh, makepolymers.sh, mapPacBio.sh, matrixtocolumns.sh, mergeOTUs.sh, mergebarcodes.sh, mergepgm.sh, mergeribo.sh, mergesam.sh, mergesketch.sh, mergesorted.sh, msa.sh, mutate.sh, muxbyname.sh, partition.sh, phylip2fasta.sh, pileup.sh, plotflowcell.sh, plotgc.sh, postfilter.sh, printtime.sh, processfrag.sh, processhi-c.sh, processspeed.sh, randomgenome.sh, randomreads.sh, readlength.sh, readqc.sh, reducesilva.sh, reformat.sh, reformatpb.sh, removebadbarcodes.sh, removecatdogmousehuman.sh, removehuman.sh, removehuman2.sh, removemicrobes.sh, removesmartbell.sh, rename.sh, renameimg.sh, repair.sh, replaceheaders.sh, representative.sh, rqcfilter.sh, rqcfilter2.sh, runhmm.sh, samtoroc.sh, seal.sh, sendsketch.sh, shred.sh, shrinkaccession.sh, shuffle.sh, shuffle2.sh, sketch.sh, sketchblacklist.sh, sketchblacklist2.sh, sortbyname.sh, splitbytaxa.sh, splitnextera.sh, splitribo.sh, splitsam.sh, splitsam4way.sh, splitsam6way.sh, stats.sh, statswrapper.sh, streamsam.sh, subsketch.sh, summarizecontam.sh, summarizecoverage.sh, summarizecrossblock.sh, summarizemerge.sh, summarizequast.sh, summarizescafstats.sh, summarizeseal.sh, summarizesketch.sh, synthmda.sh, tadpipe.sh, tadpole.sh, tadwrapper.sh, taxonomy.sh, taxserver.sh, taxsize.sh, taxtree.sh, testfilesystem.sh, testformat.sh, testformat2.sh, tetramerfreq.sh, textfile.sh, translate6frames.sh, unicode2ascii.sh, unzip.sh, vcf2gff.sh, webcheck.sh |
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GITHUB
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quay.io/biocontainers/bbmix |
singularity registry hpc automated addition for bbmix |
qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fonttools, pyftmerge, pyftsubset, ttx, tjbench, brotli, opj_compress, opj_decompress, opj_dump |
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GITHUB
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quay.io/biocontainers/bcalm |
shpc-registry automated BioContainers addition for bcalm |
bcalm, h5cc |
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GITHUB
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quay.io/biocontainers/bcbio-gff |
shpc-registry automated BioContainers addition for bcbio-gff |
aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
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GITHUB
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quay.io/biocontainers/bcbio-prioritize |
shpc-registry automated BioContainers addition for bcbio-prioritize |
bcbio-prioritize, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/bcbio-rnaseq |
shpc-registry automated BioContainers addition for bcbio-rnaseq |
bcbio-rnaseq, pandoc-citeproc, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj |
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GITHUB
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quay.io/biocontainers/bcbio-variation-recall |
shpc-registry automated BioContainers addition for bcbio-variation-recall |
bcbio-variation-recall, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/bcbio-variation |
shpc-registry automated BioContainers addition for bcbio-variation |
bcbio-variation, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/bcbio_monitor |
shpc-registry automated BioContainers addition for bcbio_monitor |
bcbio_monitor, flask, cxpm, sxpm, acyclic, bcomps, ccomps, circo, dijkstra, dot, dot2gxl |
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GITHUB
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quay.io/biocontainers/bcbiogff |
shpc-registry automated BioContainers addition for bcbiogff |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/bcbreport |
shpc-registry automated BioContainers addition for bcbreport |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/bcdoc |
shpc-registry automated BioContainers addition for bcdoc |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, rst2html.py |
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GITHUB
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quay.io/biocontainers/bcftools-gtc2vcf-plugin |
shpc-registry automated BioContainers addition for bcftools-gtc2vcf-plugin |
guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl |
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GITHUB
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quay.io/biocontainers/bcftools-snvphyl-plugin |
shpc-registry automated BioContainers addition for bcftools-snvphyl-plugin |
guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/bcftools |
shpc-registry automated BioContainers addition for bcftools |
bcftools, bgzip, color-chrs.pl, gff2gff.py, guess-ploidy.py, htsfile, libdeflate-gunzip, libdeflate-gzip, plot-roh.py, plot-vcfstats, run-roh.pl, tabix, vcfutils.pl |
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GITHUB
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quay.io/biocontainers/bcgtree |
singularity registry hpc automated addition for bcgtree |
Gblocks, bash, bashbug, bcgTree.pl, concatenate_by_header.pl, extract_essential_genes.sh, mm-alignments.pl, plot_matrix.py, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, muscle, prodigal, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn, esl-seqrange |
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GITHUB
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quay.io/biocontainers/bcl2fastq-nextseq |
shpc-registry automated BioContainers addition for bcl2fastq-nextseq |
bcl_to_fastq, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc |
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GITHUB
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quay.io/biocontainers/bcool |
shpc-registry automated BioContainers addition for bcool |
bcalm, bcool, bgreat, btrim, ntcard, nthll, h5cc, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/bcov |
shpc-registry automated BioContainers addition for bcov |
bcov, glpsol |
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GITHUB
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quay.io/biocontainers/bctools |
shpc-registry automated BioContainers addition for bctools |
convert_bc_to_binary_RY.py, coords2clnt.py, datamash, extract_aln_ends.py, extract_bcs.py, merge_pcr_duplicates.py, remove_tail.py, rm_spurious_events.pl, rm_spurious_events.py, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, f2py3.6, guess-ploidy.py |
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GITHUB
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quay.io/biocontainers/bd2k-python-lib |
shpc-registry automated BioContainers addition for bd2k-python-lib |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/beacon2-import |
singularity registry hpc automated addition for beacon2-import |
beacon2-import, beacon2-search, bioblend-galaxy-tests, asadmin, bundle_image, cfadmin, cq, cwutil, cyvcf2, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier, instance_events, kill_instance, launch_instance, list_instances, lss3, mturk, pyami_sendmail, route53, s3put, sdbadmin, taskadmin, coloredlogs, humanfriendly, f2py3.6 |
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GITHUB
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quay.io/biocontainers/beacon2-ri-tools |
singularity registry hpc automated addition for beacon2-ri-tools |
beacon, bff-validator, bff2html.pl, bff2json.pl, crc32, csv2xlsx, extract_vba, hypnotoad, mojo, morbo, perl-doc, pxf2bff, vcf2bff.pl, yamlpp5-events, yamlpp5-highlight, yamlpp5-load, yamlpp5-load-dump, yamlpp5-parse-emit, pg_amcheck, pg_verifybackup, pg_checksums, tzselect, zdump, zic, oid2name, pg_receivewal, pg_resetwal, pg_waldump, vacuumlo, clusterdb, createdb, createuser, dropdb, dropuser, ecpg, initdb, pg_archivecleanup, pg_basebackup, pg_controldata, pg_ctl, pg_dump, pg_dumpall, pg_isready |
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GITHUB
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quay.io/biocontainers/beagle-lib |
shpc-registry automated BioContainers addition for beagle-lib |
cups-config, ippeveprinter, ipptool, libtoolize, libtool, jfr, jaotc, aserver, jdeprscan, jhsdb |
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GITHUB
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quay.io/biocontainers/beagle |
shpc-registry automated BioContainers addition for beagle |
beagle, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/beamspy |
shpc-registry automated BioContainers addition for beamspy |
beamspy, pyside2-lupdate, pyside2-rcc, pyside2-uic, pyside_tool.py, shiboken2, shiboken_tool.py, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, qwebengine_convert_dict |
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GITHUB
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quay.io/biocontainers/beast |
shpc-registry automated BioContainers addition for beast |
beast, beauti, loganalyser, logcombiner, treeannotator, treestat, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/beast2 |
shpc-registry automated BioContainers addition for beast2 |
applauncher, beast, beauti, densitree, loganalyser, logcombiner, packagemanager, treeannotator, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/beav |
singularity registry hpc automated addition for beav |
MitoHighConfidenceFilter, TMalign, amr_report, amrfinder, amrfinder_index, amrfinder_update, antismash, bakta, bakta_db, bakta_plot, bakta_proteins, beav, beav_db, defense-finder, dna_mutation, download-antismash-databases, fasta2parts, fasta_check, fasta_extract, gff_check, hmmalign2, hmmbuild2, hmmcalibrate2, hmmconvert2, hmmemit2, hmmfetch2, hmmindex2, hmmpfam2, hmmsearch2, integron_finder, integron_merge, integron_split, less2scss, macsyconfig, macsydata, macsyfinder, macsymerge, macsyprofile, macsysplit, pilercr, pl2bat.pl, pyrodigal, pyscss, tbl2asn-test, xsltproc_lite, make_pscores.pl, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip, compute-prior-dist, compute-uniform-priors, create-priors, dreme, dreme_xml_to_html, dreme_xml_to_txt, dust, elm2meme, fasta-center, fasta-dinucleotide-shuffle, fasta-fetch, fasta-get-markov, fasta-grep, fasta-hamming-enrich |
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GITHUB
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quay.io/biocontainers/bed2gff |
singularity registry hpc automated addition for bed2gff |
bed2gff |
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GITHUB
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quay.io/biocontainers/bed2gtf |
singularity registry hpc automated addition for bed2gtf |
bed2gtf |
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GITHUB
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quay.io/biocontainers/bedgovcf |
singularity registry hpc automated addition for bedgovcf |
bedgovcf, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/bedops |
shpc-registry automated BioContainers addition for bedops |
bedops, bedops-float128, bedops-megarow, bedops-typical, switch-BEDOPS-binary-type, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical, bam2bed_sge, bam2bed_sge-float128 |
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GITHUB
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quay.io/biocontainers/bedparse |
shpc-registry automated BioContainers addition for bedparse |
bedparse, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/bedtk |
shpc-registry automated BioContainers addition for bedtk |
bedtk |
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GITHUB
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quay.io/biocontainers/bedtools |
shpc-registry automated BioContainers addition for bedtools |
bedtools, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, closestBed, clusterBed |
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GITHUB
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quay.io/biocontainers/behst |
shpc-registry automated BioContainers addition for behst |
behst, behst-download-data, behst-download-data.sh, behst.orig, behst.py, chromRegionLength.r, dataframeSumAllValues.r, difference_from_first_TSS_script_mordor.r, difference_from_first_TSS_script_mordor_chrom_wide.r, download_behst_data.sh, gProfilerCall.r, gene_annotation_parser.py, gene_annotation_parser_load_pickled_files.py, hiC_parser.py, hiC_parser_load_pickle_file.py, list_of_files, plot_heatmaps.r, project.sh, project.sh.orig, pvaluesPlotGenerator.r, retrieveMinRowCol.r, script_all_heatmaps.sh, script_multi_project_run.sh, script_multi_project_run_WITHOUT_LOOP.sh, script_multi_project_run_input_parameters.sh, temp_test.sh, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, idn2, shiftBed |
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GITHUB
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quay.io/biocontainers/bel-resources |
shpc-registry automated BioContainers addition for bel-resources |
bel-resources, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/bellerophon |
shpc-registry automated BioContainers addition for bellerophon |
bellerophon, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/bellmans-gapc |
shpc-registry automated BioContainers addition for bellmans-gapc |
gapc |
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GITHUB
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quay.io/biocontainers/berokka |
shpc-registry automated BioContainers addition for berokka |
berokka, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml, basemlg, chi2, codeml, evolver, infinitesites |
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GITHUB
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quay.io/biocontainers/besst |
shpc-registry automated BioContainers addition for besst |
reads_to_ctg_map.py, runBESST, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/bftools |
shpc-registry automated BioContainers addition for bftools |
bf.sh, bfconvert, bioformats_package.jar, config.sh, domainlist, formatlist, ijview, mkfake, showinf, tiffcomment, xmlindent, xmlvalid, metadata_conda_debug.yaml, jpackage, cups-config, ippeveprinter, ipptool, build_env_setup.sh, conda_build.sh, jfr, aserver, jdeprscan |
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GITHUB
|
quay.io/biocontainers/bgreat |
shpc-registry automated BioContainers addition for bgreat |
bgreat |
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GITHUB
|
quay.io/biocontainers/bialign |
singularity registry hpc automated addition for bialign |
bialign.py, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, gif2rgb, gifbuild, gifclrmp, giffix, giftext, giftool |
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GITHUB
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quay.io/biocontainers/biasaway |
shpc-registry automated BioContainers addition for biasaway |
biasaway, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc, tificc |
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GITHUB
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quay.io/biocontainers/bibliospec |
shpc-registry automated BioContainers addition for bibliospec |
BlibBuild, BlibFilter, BlibSearch, BlibToMs2 |
|
GITHUB
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quay.io/biocontainers/bicseq2-norm |
shpc-registry automated BioContainers addition for bicseq2-norm |
BRS, NBICseq-norm.pl, PrepPois, PrepPoisGAM, combineFile, compRatio.R, filterCNV, normalize.R, normalizeGAM.R, plot_RC_vs_GC.R, purity.R, purityEM, random_split, refine.R, refineGAM.R, test.mgcv.installed.R, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/bicseq2-seg |
shpc-registry automated BioContainers addition for bicseq2-seg |
BICseqMulSample.pl, BICseqOneSample.pl, BICseqTwoSample.pl, EstLambdaFct, MBICseq, NBICseq-seg.pl, bootstrap, combineFile, combineSegBoostrap.R, countRead, genotype, genotype.pl, plotProfile.R, report.R, reportOneSample.R, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/bifrost |
shpc-registry automated BioContainers addition for bifrost |
Bifrost |
|
GITHUB
|
quay.io/biocontainers/bigscape |
singularity registry hpc automated addition for bigscape |
bigscape.py, matplotlib, FastTreeMP, FastTree, fasttree, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn, esl-seqrange, esl-seqstat, esl-sfetch, esl-shuffle, esl-ssdraw, esl-translate |
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GITHUB
|
quay.io/biocontainers/bigsi |
shpc-registry automated BioContainers addition for bigsi |
bigsi, falcon-bench, falcon-print-routes, hug, humanfriendly, cygdb, cython, cythonize, db_archive, db_checkpoint, db_deadlock, db_dump, db_hotbackup, db_load |
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GITHUB
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quay.io/biocontainers/bigslice |
singularity registry hpc automated addition for bigslice |
bigslice, download_bigslice_hmmdb, vectorize_bgcs, protoc-25.3.0, numpy-config, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, protoc |
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GITHUB
|
quay.io/biocontainers/bigtools |
singularity registry hpc automated addition for bigtools |
bedgraphtobigwig, bedtobigbed, bigbedinfo, bigbedtobed, bigtools, bigwigaverageoverbed, bigwiginfo, bigwigmerge, bigwigtobedgraph, bigwigvaluesoverbed |
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GITHUB
|
quay.io/biocontainers/binchicken |
singularity registry hpc automated addition for binchicken |
binchicken, cmtime, eido, genl-ctrl-list, ib_acme, ibis, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, idiag-socket-details, jsondiff, jsonpatch, jsonpointer, mckey, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave, nl-link-ifindex2name, nl-link-list, nl-link-name2ifindex, nl-link-release, nl-link-set, nl-link-stats, nl-list-caches, nl-list-sockets, nl-monitor, nl-neigh-add, nl-neigh-delete, nl-neigh-list, nl-neightbl-list, nl-nh-list, nl-pktloc-lookup, nl-qdisc-add, nl-qdisc-delete, nl-qdisc-list, nl-route-add, nl-route-delete, nl-route-get, nl-route-list, nl-rule-list, nl-tctree-list, nl-util-addr, protoc-24.4.0, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, ucmatose, udaddy, udpong, io_demo, ucx_info, ucx_perftest, ucx_read_profile, mamba-package, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, conda2solv, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, bsdcat, bsdcpio, bsdtar, conda-env, cph, elasticurl, elasticurl_cpp |
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GITHUB
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quay.io/biocontainers/bindash |
shpc-registry automated BioContainers addition for bindash |
bindash |
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GITHUB
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quay.io/biocontainers/binette |
singularity registry hpc automated addition for binette |
binette, checkm2, protoc-23.3.0, pyrodigal, pyfastx, import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, diamond, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, markdown_py, prodigal, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign |
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GITHUB
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quay.io/biocontainers/binlorry |
shpc-registry automated BioContainers addition for binlorry |
binlorry, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/binning_refiner |
singularity registry hpc automated addition for binning_refiner |
Binning_refiner, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/binny |
singularity registry hpc automated addition for binny |
binny, blastn_vdb, cmtime, cnitool, elastipubsub5, h5fuse.sh, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, io_demo, mantis, mckey, mksquashfs, mqtt5_app, mqtt5_canary, mqtt5canary, nltk, produce_x_platform_fuzz_corpus, protoc-23.3.0, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, run-singularity, run_x_platform_fuzz_corpus, scalar, scmp_sys_resolver, singularity, tblastn_vdb, ucmatose, ucx_info, ucx_perftest, ucx_read_profile, udaddy, udpong, unsquashfs, elasticurl, elasticurl_cpp, elastipubsub, markdown-it, bsdcat, bsdcpio, bsdtar, csv-import, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, orc-memory, orc-scan, seqkit, timezone-dump, h5delete, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh |
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GITHUB
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quay.io/biocontainers/binsanity |
shpc-registry automated BioContainers addition for binsanity |
Binsanity, Binsanity-lc, Binsanity-profile, Binsanity-refine, Binsanity-wf, Binsanity2-beta, bin_evaluation, checkm, checkm_analysis, concat, detectionCall, exactSNP, featureCounts, flattenGTF, genRandomReads, get-ids, identifyHMM, propmapped, qualityScores, removeDup, repair, simplify-fasta, subindel, subjunc, sublong, subread-align, subread-buildindex, subread-fullscan, transform-coverage-profile, txUnique, rppr, guppy, pplacer, dendropy-format, sumlabels.py, sumtrees.py, prodigal, hmmpgmd_shard, easel, esl-mixdchlet |
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GITHUB
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quay.io/biocontainers/binspreader |
singularity registry hpc automated addition for binspreader |
bin-refine |
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GITHUB
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quay.io/biocontainers/bio-ting |
shpc-registry automated BioContainers addition for bio-ting |
imseq2ting, ting, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/bio-vcf |
singularity registry hpc automated addition for bio-vcf |
bio-vcf, bundle, bundler, gdbm_dump, gdbm_load, gdbmtool, erb, gem, irb, rake, rdoc, ri, ruby |
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GITHUB
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quay.io/biocontainers/bio_assembly_refinement |
shpc-registry automated BioContainers addition for bio_assembly_refinement |
contig_break_finder, contig_cleaner, contig_overlap_trimmer, pacbio_post_process, fastaq, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer |
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GITHUB
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quay.io/biocontainers/bio_hansel |
shpc-registry automated BioContainers addition for bio_hansel |
biohansel, hansel, cmark, pygmentize, futurize, pasteurize, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/bioawk |
shpc-registry automated BioContainers addition for bioawk |
bioawk |
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GITHUB
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quay.io/biocontainers/biobambam |
shpc-registry automated BioContainers addition for biobambam |
bam12auxmerge, bam12split, bam12strip, bamadapterclip, bamadapterfind, bamalignfrac, bamauxmerge, bamauxsort, bamcat, bamchecksort, bamclipreinsert, bamcollate, bamcollate2, bamdownsamplerandom, bamexplode, bamfillquery, bamfilteraux, bamfilterflags, bamfilterheader, bamfilterheader2, bamfilterlength, bamfiltermc, bamfilternames, bamfilterrefid, bamfilterrg, bamfixmateinformation, bamflagsplit, bamheap2, bamindex, bamintervalcomment, bamintervalcommenthist, bamlastfilter, bammapdist, bammarkduplicates, bammarkduplicates2, bammarkduplicatesopt, bammaskflags, bammdnm, bammerge, bamnumericalindex, bamrank, bamranksort, bamrecalculatecigar, bamrecompress, bamrefinterval, bamreset, bamscrapcount, bamseqchksum, bamsormadup, bamsort, bamsplit, bamsplitdiv, bamstreamingmarkduplicates, bamtagconversion, bamtofastq, bamvalidate, bamzztoname |
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GITHUB
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quay.io/biocontainers/biobasehttptools |
shpc-registry automated BioContainers addition for biobasehttptools |
AccessionToTaxId, AccessionToTaxId-bin, FetchSequence, FetchSequence-bin, GeneIdToGOTerms, GeneIdToGOTerms-bin, GeneIdToUniProtId, GeneIdToUniProtId-bin |
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GITHUB
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quay.io/biocontainers/biobb_adapters |
shpc-registry automated BioContainers addition for biobb_adapters |
bagit.py, black, black-primer, blackd, jupyter-console, jupyter-dejavu, jupyter-qtconsole, prov-compare, prov-convert, send2trash, cwltool, schema-salad-doc, schema-salad-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, jupyter-bundlerextension, jupyter-nbextension |
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GITHUB
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quay.io/biocontainers/biobb_amber |
shpc-registry automated BioContainers addition for biobb_amber |
AddToBox, CartHess2FC.py, ChBox, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, MMPBSA.py.MPI, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, amber_to_pdb, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, bar_pbsa.py, bondtype, bondtype.orig, car_to_files.py, ceinutil.py, cestats, cestats_run, charmmlipid2amber.py, cpeinutil.py, cphstats, cphstats_run, cpinutil.py, cpptraj, cpptraj_randomize_ions, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gwh, hcp_getpdb, leap_add_ions, leap_build_linear_structure, leap_gen_top, leap_solvate, makeANG_RST, makeCHIR_RST, makeCSA_RST.na, makeDIP_RST.protein, makeDIST_RST, makeRIGID_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nab_build_dna_structure, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, parmed_cpinutil, parmed_hmassrepartition, pbsa, pdb4amber, pdb4amber_run, pmemd_mdrun, prepgen, process_mdout, process_mdout.perl, process_minout, process_minout.perl, py_resp.py, pymdpbsa, pytleap, reduce, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, sander_mdrun, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tinker_to_amber, tleap, ucpp, xaLeap, xleap, xparmed, cygdb, cython, cythonize, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc |
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GITHUB
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quay.io/biocontainers/biobb_analysis |
shpc-registry automated BioContainers addition for biobb_analysis |
AddToBox, CartHess2FC.py, ChBox, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, MMPBSA.py.MPI, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, bar_pbsa.py, bondtype, bondtype.orig, car_to_files.py, ceinutil.py, cestats, charmmlipid2amber.py, cpeinutil.py, cphstats, cpinutil.py, cpptraj, cpptraj_average, cpptraj_bfactor, cpptraj_convert, cpptraj_dry, cpptraj_image, cpptraj_mask, cpptraj_rgyr, cpptraj_rms, cpptraj_rmsf, cpptraj_slice, cpptraj_snapshot, cpptraj_strip, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gmx, gmx_cluster, gmx_energy, gmx_image, gmx_rgyr, gmx_rms, gmx_trjconv_str, gmx_trjconv_str_ens, gmx_trjconv_trj, gwh, hcp_getpdb, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, makeANG_RST, makeCHIR_RST, makeCSA_RST.na, makeDIP_RST.protein, makeDIST_RST, makeRIGID_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, pbsa, pdb4amber, prepgen, process_mdout.perl, process_minout.perl, py_resp.py, pymdpbsa, pytleap, reduce, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tinker_to_amber, tleap, ucpp, xaLeap, xleap, xparmed, cygdb, cython, cythonize, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc |
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GITHUB
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quay.io/biocontainers/biobb_chemistry |
shpc-registry automated BioContainers addition for biobb_chemistry |
AddToBox, CartHess2FC.py, ChBox, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, MMPBSA.py.MPI, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, acpype, acpype_params_ac, acpype_params_cns, acpype_params_gmx, acpype_params_gmx_opls, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, babel_add_hydrogens, babel_convert, babel_minimize, babel_remove_hydrogens, bar_pbsa.py, bondtype, bondtype.orig, car_to_files.py, ceinutil.py, cestats, charmmlipid2amber.py, cpeinutil.py, cphstats, cpinutil.py, cpptraj, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gwh, hcp_getpdb, makeANG_RST, makeCHIR_RST, makeCSA_RST.na, makeDIP_RST.protein, makeDIST_RST, makeRIGID_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, obfitall, obmm, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, pbsa, pdb4amber, prepgen, process_mdout.perl, process_minout.perl, py_resp.py, pymdpbsa, pytleap, reduce, reduce_add_hydrogens, reduce_remove_hydrogens, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tinker_to_amber, tleap, ucpp, xaLeap, xleap, xparmed, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop |
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GITHUB
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quay.io/biocontainers/biobb_cmip |
shpc-registry automated BioContainers addition for biobb_cmip |
avgEpsGrid, canal, check_structure, cmip, getPatch, grd2cube, gsd, mrcfile-header, mrcfile-validate, nc3tonc4, nc4tonc3, ncinfo, prepare_structure, surfnet2binaryGrid, titration, watden, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
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GITHUB
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quay.io/biocontainers/biobb_common |
shpc-registry automated BioContainers addition for biobb_common |
normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/biobb_cp2k |
singularity registry hpc automated addition for biobb_cp2k |
cp2k.sopt, cp2k.ssmp, cp2k_prep, cp2k_run, cp2k_shell.ssmp, libxsmm_gemm_generator, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, normalizer, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/biobb_dna |
shpc-registry automated BioContainers addition for biobb_dna |
AddToBox, Canal, Canion, CartHess2FC.py, ChBox, Cur+, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, average_stiffness, basepair_stiffness, biobb_canal, biobb_canion, biobb_curves, bipopulations, bondtype, bondtype.orig, canonicalag, car_to_files.py, ceinutil.py, cestats, charmmlipid2amber.py, cpeinutil.py, cphstats, cpinutil.py, cpptraj, dna_averages, dna_bimodality, dna_timeseries, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gwh, hcp_getpdb, interbpcorr, interhpcorr, interseqcorr, intrabpcorr, intrahpcorr, intraseqcorr, makeANG_RST, makeDIST_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, pbsa, pdb4amber, prepgen, process_mdout.perl, process_minout.perl, puckering, pymdpbsa, pytleap, reduce, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tleap, ucpp, xaLeap, xleap, xparmed, cygdb, cython, cythonize, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
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GITHUB
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quay.io/biocontainers/biobb_flexdyn |
singularity registry hpc automated addition for biobb_flexdyn |
NOLB, concoord_disco, concoord_dist, dist, dist.exe, evol, imc, imod_imode, imod_imove, imode_gcc, imodview, imove, nolb_nma, prody, prody_anm, disco, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/biobb_flexserv |
singularity registry hpc automated addition for biobb_flexserv |
bd, bd_run, bison, diaghess, dmd_run, dmdgoopt, flex, flex++, genpcz, lorellnma, m4, mc-eigen-mdweb.pl, mc-eigen.pl, nma_run, nmanu.pl, pca_anim_mc.pl, pcaunzip, pcazip, pcz_animate, pcz_bfactor, pcz_collectivity, pcz_evecs, pcz_hinges, pcz_info, pcz_lindemann, pcz_similarity, pcz_stiffness, pcz_unzip, pcz_zip, pczdump, yacc, aec, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff, hdp, hrepack, jpeg2hdf |
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GITHUB
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quay.io/biocontainers/biobb_godmd |
singularity registry hpc automated addition for biobb_godmd |
discrete, godmd_prep, godmd_run, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/biobb_gromacs |
singularity registry hpc automated addition for biobb_gromacs |
append_ligand, editconf, genion, genrestr, gmx, gmxselect, grompp, grompp_mdrun, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, make_ndx, mdrun, ndx2resttop, pdb2gmx, solvate, trjcat, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, normalizer, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/biobb_haddock |
singularity registry hpc automated addition for biobb_haddock |
capri_eval, clust_fcc, em_ref, flex_ref, rigid_body, sele_top, topology, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, normalizer |
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GITHUB
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quay.io/biocontainers/biobb_io |
shpc-registry automated BioContainers addition for biobb_io |
alphafold, api_binding_site, canonical_fasta, drugbank, ideal_sdf, ligand, memprotmd_sim, memprotmd_sim_list, memprotmd_sim_search, mmcif, pdb, pdb_cluster_zip, pdb_variants, structure_info, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/biobb_md |
shpc-registry automated BioContainers addition for biobb_md |
GMXRC, GMXRC.bash, GMXRC.csh, GMXRC.zsh, append_ligand, demux.pl, editconf, genion, genrestr, gmx, gmx-completion-gmx.bash, gmx-completion.bash, gmxselect, grompp, grompp_mdrun, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, make_ndx, mdrun, ndx2resttop, pdb2gmx, solvate, xplor2gmx.pl, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, normalizer, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7 |
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GITHUB
|
quay.io/biocontainers/biobb_ml |
shpc-registry automated BioContainers addition for biobb_ml |
agglomerative_clustering, agglomerative_coefficient, autoencoder_neural_network, classification_neural_network, classification_predict, clustering_predict, correlation_matrix, dbscan, decision_tree, dendrogram, drop_columns, dummy_variables, import_pb_to_tensorboard, k_means, k_means_coefficient, k_neighbors, k_neighbors_coefficient, linear_regression, logistic_regression, map_variables, neural_network_decode, neural_network_predict, oversampling, pairwise_comparison, pls_components, pls_regression, polynomial_regression, principal_component, random_forest_classifier, random_forest_regressor, recurrent_neural_network, regression_neural_network, regression_predict, resampling, scale_columns, spectral_clustering, spectral_coefficient, support_vector_machine, undersampling, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2 |
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GITHUB
|
quay.io/biocontainers/biobb_model |
shpc-registry automated BioContainers addition for biobb_model |
check_structure, checking_log, fix_amides, fix_backbone, fix_chirality, fix_side_chain, mutate, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/biobb_pdb_tools |
singularity registry hpc automated addition for biobb_pdb_tools |
biobb_pdb_chain, biobb_pdb_chainxseg, biobb_pdb_delhetatm, biobb_pdb_fetch, biobb_pdb_merge, biobb_pdb_mkensemble, biobb_pdb_reres, biobb_pdb_seg, biobb_pdb_splitmodel, biobb_pdb_splitseg, biobb_pdb_tidy, biobb_pdb_tofasta, pdb_b, pdb_chain, pdb_chainbows, pdb_chainxseg, pdb_chkensemble, pdb_delchain, pdb_delelem, pdb_delhetatm, pdb_delinsertion, pdb_delres, pdb_delresname, pdb_element, pdb_fetch, pdb_fixinsert, pdb_fromcif, pdb_gap, pdb_head, pdb_intersect, pdb_keepcoord, pdb_merge, pdb_mkensemble, pdb_occ, pdb_reatom, pdb_reres, pdb_rplchain, pdb_rplresname, pdb_seg, pdb_segxchain, pdb_selaltloc, pdb_selatom, pdb_selchain, pdb_selelem, pdb_selhetatm, pdb_selmodel, pdb_selres, pdb_selresname, pdb_selseg, pdb_shiftres, pdb_sort, pdb_splitchain, pdb_splitmodel, pdb_splitseg, pdb_tidy, pdb_tocif, pdb_tofasta, pdb_uniqname, pdb_validate, pdb_wc, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, normalizer |
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GITHUB
|
quay.io/biocontainers/biobb_pmx |
shpc-registry automated BioContainers addition for biobb_pmx |
pmx, pmxanalyse, pmxatom_mapping, pmxcreate_top, pmxgentop, pmxligand_hybrid, pmxmerge_ff, pmxmutate, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, futurize, pasteurize, f2py3.7, opj_compress |
|
GITHUB
|
quay.io/biocontainers/biobb_pytorch |
singularity registry hpc automated addition for biobb_pytorch |
apply_mdae, protoc-25.1.0, torch_shm_manager, train_mdae, torchrun, isympy, convert-caffe2-to-onnx, convert-onnx-to-caffe2, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, protoc, normalizer |
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GITHUB
|
quay.io/biocontainers/biobb_remote |
singularity registry hpc automated addition for biobb_remote |
credentials, scp_service, slurm_test, ssh_command, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
|
quay.io/biocontainers/biobb_structure_checking |
shpc-registry automated BioContainers addition for biobb_structure_checking |
check_structure, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/biobb_structure_manager |
shpc-registry automated BioContainers addition for biobb_structure_manager |
f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
|
quay.io/biocontainers/biobb_structure_utils |
shpc-registry automated BioContainers addition for biobb_structure_utils |
cat_pdb, check_structure, closest_residues, extract_atoms, extract_chain, extract_heteroatoms, extract_model, extract_molecule, extract_residues, remove_ligand, remove_molecules, remove_pdb_water, renumber_structure, sort_gro_residues, str_check_add_hydrogens, structure_check, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/biobb_vs |
shpc-registry automated BioContainers addition for biobb_vs |
autodock_vina_run, bindingsite, box, box_residues, dpocket, extract_model_pdbqt, fpocket, fpocket_filter, fpocket_run, fpocket_select, mdpocket, tpocket, vina, vina_split, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
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GITHUB
|
quay.io/biocontainers/biobb_wf_mutations |
shpc-registry automated BioContainers addition for biobb_wf_mutations |
GMXRC, GMXRC.bash, GMXRC.csh, GMXRC.zsh, bagit.py, demux.pl, editconf, fix_side_chain, genion, genrestr, gmx, gmx-completion-gmx.bash, gmx-completion.bash, grompp, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, jupyter-console, jupyter-qtconsole, lstopo, lstopo-no-graphics, make_ndx, mdrun, mutate, ndx2resttop, pdb, pdb2gmx, pdb_cluster_zip, pdb_variants, prov-compare, prov-convert, solvate, xplor2gmx.pl, cwltool, schema-salad-doc, schema-salad-tool, g-ir-doc-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, jupyter-bundlerextension |
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GITHUB
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quay.io/biocontainers/bioblend |
shpc-registry automated BioContainers addition for bioblend |
bioblend-galaxy-tests, x86_64-conda_cos7-linux-gnu-ld, normalizer, futurize, pasteurize, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/biobloomtools |
singularity registry hpc automated addition for biobloomtools |
biobloomcategorizer, biobloommaker, biobloommicategorizer, biobloommimaker |
|
GITHUB
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quay.io/biocontainers/biobox_add_taxid |
singularity registry hpc automated addition for biobox_add_taxid |
biobox_add_taxid.py, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/biocamlib |
singularity registry hpc automated addition for biocamlib |
FASTools, Octopus, Parallel, RC |
|
GITHUB
|
quay.io/biocontainers/biocantor |
singularity registry hpc automated addition for biocantor |
gffutils-cli, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/biocode |
singularity registry hpc automated addition for biocode |
add_gff3_locus_tags.py, add_polypeptide_to_gff3_gene_models.py, append_to_column_9_value.py, append_to_fasta_header.py, append_to_fastq_read_header.py, calculate_gene_coverage_from_assembly.py, calculate_query_coverage_by_blast.py, check_for_embedded_fasta_headers.py, check_gff_for_internal_stops.py, compare_gene_structures.py, convert_aat_btab_to_gff3.py, convert_augustus_to_gff3.py, convert_blast_btab_to_bed.py, convert_blast_btab_to_gff3.py, convert_cegma_gff_to_gff3.py, convert_cufflinks_gtf_to_gff3.py, convert_fasta_contigs_to_gff3.py, convert_fastq_to_fasta.py, convert_genbank_to_gff3.py, convert_gff3_to_bed.py, convert_gff3_to_gbk.py, convert_gff3_to_gene_association_format.py, convert_gff3_to_ncbi_tbl.py, convert_gff_to_ncbi_gff3.py, convert_glimmerHMM_gff_to_gff3.py, convert_htab_to_bed.py, convert_metagenemark_gff_to_gff3.py, convert_pasa_gff_to_models.py, convert_prodigal_to_gff3.py, convert_scipio_gff_to_gff3.py, correct_gff3_CDS_phase_column.py, create_rsem_html_table.py, create_taxonomic_profile_from_blast.py, create_taxonomy_db.py, detect_inverted_repeats.py, download_assemblies_from_genbank.py, eggnog_to_sqlite3.py, extend_genes_to_stops.py, extract_fasta_regions.py, fasta_base_content.py, fasta_simple_stats.py, fasta_size_distribution_plot.py, fastq_simple_stats.py, filter_fasta_by_abundance.py, filter_fasta_by_header_regex.py, filter_fasta_by_type.py, filter_fastq_by_N_content.py, filter_gff3_by_id_list.py, filter_uniref_by_repid.py, filter_uniref_by_taxonomy.py, get_mpilup_from_id_list.py, hmmlib_to_sqlite3.py, interleave_fastq.py, join_columnar_files.py, list_biocode.py, make_cufflinks_ids_unique.py, make_go_index.py, make_go_slim.py, make_go_slim_index.py, mark_partial_genes.py, merge_bam_files.py, merge_fasta_files_and_uniquify_ids.py, merge_masked_fasta_files.py, merge_predicted_gff3.py, prepend_to_fasta_header.py, pwiz.py, randomly_subsample_fastq.py, reformat_fasta_residue_lengths.py, remove_duplicate_features.py, remove_duplicate_sequences.py, remove_masked_gene_models.py, remove_orphaned_features.py, reorient_sequences_by_id.py, replace_gff_type_column_value.py, replace_homopolymeric_repeats_with_Ns.py, report_basic_gff_model_agreement.py, report_coverage_gaps.py, report_gff3_statistics.py, report_gff_intron_and_intergenic_stats.py, report_go_slim_counts.py, report_or_replace_nonstandard_residues.py, reverse_misordered_cds_coords.py, select_training_and_evaluation_transcripts.py, set_source_column.py, split_fasta_into_even_files.py, split_interleaved_sequence_file.py, split_isoforms_into_individual_genes.py, split_molecules_on_gaps.py, subsample_fasta.py, taxadb, tigrfam_info_to_sqlite3.py, uniprot_sprot_to_sqlite3.py, uniref_to_sqlite3.py, update_selected_column9_values.py, validate_fasta.py, validate_feature_boundaries_on_molecules.py, write_fasta_from_gff.py, igraph, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis, ndmetis, glpsol, fonttools, pyftmerge, pyftsubset, ttx, normalizer, tqdm, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/biocommons.seqrepo |
shpc-registry automated BioContainers addition for biocommons.seqrepo |
pyppeteer-install, seqrepo, sqlformat, yoyo, yoyo-migrate, coloredlogs, humanfriendly, tabulate, normalizer, tqdm, xslt-config, xsltproc, 2to3-3.9, idle3.9, pydoc3.9 |
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GITHUB
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quay.io/biocontainers/bioconda-utils |
shpc-registry automated BioContainers addition for bioconda-utils |
anaconda, binstar, bioconda-utils, boa, bsdcat, bsdcpio, bsdtar, celery, conda-build, conda-convert, conda-debug, conda-develop, conda-index, conda-inspect, conda-mambabuild, conda-metapackage, conda-render, conda-server, conda-skeleton, conda-verify, conda2solv, dumpsolv, galaxy-tool-test, installcheck, involucro, mamba, mamba-package, mergesolv, mulled-build, mulled-build-channel, mulled-build-files, mulled-build-tool, mulled-search, patchelf, pkginfo, pyjson5, repo2solv, rg, scalar, skopeo, testsolv, watchgod, conda-env, cph, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, docutils |
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GITHUB
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quay.io/biocontainers/bioconda2biocontainer |
shpc-registry automated BioContainers addition for bioconda2biocontainer |
bioconda2biocontainer, bioconda2cwldocker, biocontainers-search, normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/bioconductor-a4 |
shpc-registry automated BioContainers addition for bioconductor-a4 |
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GITHUB
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quay.io/biocontainers/bioconductor-a4base |
shpc-registry automated BioContainers addition for bioconductor-a4base |
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GITHUB
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quay.io/biocontainers/bioconductor-a4classif |
shpc-registry automated BioContainers addition for bioconductor-a4classif |
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GITHUB
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quay.io/biocontainers/bioconductor-a4core |
shpc-registry automated BioContainers addition for bioconductor-a4core |
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GITHUB
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quay.io/biocontainers/bioconductor-a4preproc |
shpc-registry automated BioContainers addition for bioconductor-a4preproc |
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GITHUB
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quay.io/biocontainers/bioconductor-a4reporting |
shpc-registry automated BioContainers addition for bioconductor-a4reporting |
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GITHUB
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quay.io/biocontainers/bioconductor-abadata |
shpc-registry automated BioContainers addition for bioconductor-abadata |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-abaenrichment |
shpc-registry automated BioContainers addition for bioconductor-abaenrichment |
wget, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/bioconductor-abarray |
shpc-registry automated BioContainers addition for bioconductor-abarray |
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GITHUB
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quay.io/biocontainers/bioconductor-abseqr |
shpc-registry automated BioContainers addition for bioconductor-abseqr |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-absseq |
shpc-registry automated BioContainers addition for bioconductor-absseq |
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GITHUB
|
quay.io/biocontainers/bioconductor-acde |
shpc-registry automated BioContainers addition for bioconductor-acde |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
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GITHUB
|
quay.io/biocontainers/bioconductor-ace |
shpc-registry automated BioContainers addition for bioconductor-ace |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
|
quay.io/biocontainers/bioconductor-acgh |
shpc-registry automated BioContainers addition for bioconductor-acgh |
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GITHUB
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quay.io/biocontainers/bioconductor-acme |
shpc-registry automated BioContainers addition for bioconductor-acme |
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GITHUB
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quay.io/biocontainers/bioconductor-adacgh2 |
shpc-registry automated BioContainers addition for bioconductor-adacgh2 |
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GITHUB
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quay.io/biocontainers/bioconductor-adam |
shpc-registry automated BioContainers addition for bioconductor-adam |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
|
quay.io/biocontainers/bioconductor-adamgui |
shpc-registry automated BioContainers addition for bioconductor-adamgui |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
|
quay.io/biocontainers/bioconductor-adaptest |
shpc-registry automated BioContainers addition for bioconductor-adaptest |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
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GITHUB
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quay.io/biocontainers/bioconductor-adductdata |
shpc-registry automated BioContainers addition for bioconductor-adductdata |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
|
quay.io/biocontainers/bioconductor-adductomicsr |
shpc-registry automated BioContainers addition for bioconductor-adductomicsr |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
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GITHUB
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quay.io/biocontainers/bioconductor-adimpute |
shpc-registry automated BioContainers addition for bioconductor-adimpute |
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GITHUB
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quay.io/biocontainers/bioconductor-adme16cod.db |
shpc-registry automated BioContainers addition for bioconductor-adme16cod.db |
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GITHUB
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quay.io/biocontainers/bioconductor-adsplit |
shpc-registry automated BioContainers addition for bioconductor-adsplit |
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GITHUB
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quay.io/biocontainers/bioconductor-adverscarial |
singularity registry hpc automated addition for bioconductor-adverscarial |
pcre2posix_test, hb-info, tjbench |
|
GITHUB
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quay.io/biocontainers/bioconductor-affixcan |
shpc-registry automated BioContainers addition for bioconductor-affixcan |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
|
quay.io/biocontainers/bioconductor-affxparser |
shpc-registry automated BioContainers addition for bioconductor-affxparser |
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GITHUB
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quay.io/biocontainers/bioconductor-affy |
shpc-registry automated BioContainers addition for bioconductor-affy |
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GITHUB
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quay.io/biocontainers/bioconductor-affycomp |
shpc-registry automated BioContainers addition for bioconductor-affycomp |
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GITHUB
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quay.io/biocontainers/bioconductor-affycompatible |
shpc-registry automated BioContainers addition for bioconductor-affycompatible |
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GITHUB
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quay.io/biocontainers/bioconductor-affycompdata |
shpc-registry automated BioContainers addition for bioconductor-affycompdata |
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GITHUB
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quay.io/biocontainers/bioconductor-affycontam |
shpc-registry automated BioContainers addition for bioconductor-affycontam |
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GITHUB
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quay.io/biocontainers/bioconductor-affycoretools |
shpc-registry automated BioContainers addition for bioconductor-affycoretools |
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GITHUB
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quay.io/biocontainers/bioconductor-affydata |
shpc-registry automated BioContainers addition for bioconductor-affydata |
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GITHUB
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quay.io/biocontainers/bioconductor-affyexpress |
shpc-registry automated BioContainers addition for bioconductor-affyexpress |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-affyhgu133a2expr |
shpc-registry automated BioContainers addition for bioconductor-affyhgu133a2expr |
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GITHUB
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quay.io/biocontainers/bioconductor-affyhgu133aexpr |
shpc-registry automated BioContainers addition for bioconductor-affyhgu133aexpr |
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GITHUB
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quay.io/biocontainers/bioconductor-affyhgu133plus2expr |
shpc-registry automated BioContainers addition for bioconductor-affyhgu133plus2expr |
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GITHUB
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quay.io/biocontainers/bioconductor-affyilm |
shpc-registry automated BioContainers addition for bioconductor-affyilm |
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GITHUB
|
quay.io/biocontainers/bioconductor-affyio |
shpc-registry automated BioContainers addition for bioconductor-affyio |
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GITHUB
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quay.io/biocontainers/bioconductor-affylmgui |
shpc-registry automated BioContainers addition for bioconductor-affylmgui |
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GITHUB
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quay.io/biocontainers/bioconductor-affymetrixdatatestfiles |
shpc-registry automated BioContainers addition for bioconductor-affymetrixdatatestfiles |
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GITHUB
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quay.io/biocontainers/bioconductor-affymoe4302expr |
shpc-registry automated BioContainers addition for bioconductor-affymoe4302expr |
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GITHUB
|
quay.io/biocontainers/bioconductor-affypara |
shpc-registry automated BioContainers addition for bioconductor-affypara |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
|
quay.io/biocontainers/bioconductor-affypdnn |
shpc-registry automated BioContainers addition for bioconductor-affypdnn |
gio-launch-desktop, c89, c99 |
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GITHUB
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quay.io/biocontainers/bioconductor-affyplm |
shpc-registry automated BioContainers addition for bioconductor-affyplm |
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GITHUB
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quay.io/biocontainers/bioconductor-affyqcreport |
shpc-registry automated BioContainers addition for bioconductor-affyqcreport |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-affyrnadegradation |
shpc-registry automated BioContainers addition for bioconductor-affyrnadegradation |
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GITHUB
|
quay.io/biocontainers/bioconductor-ag.db |
shpc-registry automated BioContainers addition for bioconductor-ag.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
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quay.io/biocontainers/bioconductor-agcdf |
shpc-registry automated BioContainers addition for bioconductor-agcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-agdex |
shpc-registry automated BioContainers addition for bioconductor-agdex |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-aggregatebiovar |
shpc-registry automated BioContainers addition for bioconductor-aggregatebiovar |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-agilp |
shpc-registry automated BioContainers addition for bioconductor-agilp |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-agimicrorna |
shpc-registry automated BioContainers addition for bioconductor-agimicrorna |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-agprobe |
shpc-registry automated BioContainers addition for bioconductor-agprobe |
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GITHUB
|
quay.io/biocontainers/bioconductor-ahcytobands |
shpc-registry automated BioContainers addition for bioconductor-ahcytobands |
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GITHUB
|
quay.io/biocontainers/bioconductor-ahensdbs |
shpc-registry automated BioContainers addition for bioconductor-ahensdbs |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-ahlrbasedbs |
shpc-registry automated BioContainers addition for bioconductor-ahlrbasedbs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ahmassbank |
singularity registry hpc automated addition for bioconductor-ahmassbank |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
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GITHUB
|
quay.io/biocontainers/bioconductor-ahmeshdbs |
shpc-registry automated BioContainers addition for bioconductor-ahmeshdbs |
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GITHUB
|
quay.io/biocontainers/bioconductor-ahpathbankdbs |
shpc-registry automated BioContainers addition for bioconductor-ahpathbankdbs |
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GITHUB
|
quay.io/biocontainers/bioconductor-ahpubmeddbs |
shpc-registry automated BioContainers addition for bioconductor-ahpubmeddbs |
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GITHUB
|
quay.io/biocontainers/bioconductor-ahwikipathwaysdbs |
shpc-registry automated BioContainers addition for bioconductor-ahwikipathwaysdbs |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-aims |
shpc-registry automated BioContainers addition for bioconductor-aims |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-airpart |
shpc-registry automated BioContainers addition for bioconductor-airpart |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-airway |
shpc-registry automated BioContainers addition for bioconductor-airway |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.base |
singularity registry hpc automated addition for bioconductor-alabaster.base |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.bumpy |
singularity registry hpc automated addition for bioconductor-alabaster.bumpy |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.files |
singularity registry hpc automated addition for bioconductor-alabaster.files |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.mae |
singularity registry hpc automated addition for bioconductor-alabaster.mae |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.matrix |
singularity registry hpc automated addition for bioconductor-alabaster.matrix |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.ranges |
singularity registry hpc automated addition for bioconductor-alabaster.ranges |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.sce |
singularity registry hpc automated addition for bioconductor-alabaster.sce |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.schemas |
singularity registry hpc automated addition for bioconductor-alabaster.schemas |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.se |
singularity registry hpc automated addition for bioconductor-alabaster.se |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.spatial |
singularity registry hpc automated addition for bioconductor-alabaster.spatial |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, hb-info, dvipdf, eps2eps, gs, gsbj, gsdj |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.string |
singularity registry hpc automated addition for bioconductor-alabaster.string |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.vcf |
singularity registry hpc automated addition for bioconductor-alabaster.vcf |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-aldex2 |
shpc-registry automated BioContainers addition for bioconductor-aldex2 |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alevinqc |
shpc-registry automated BioContainers addition for bioconductor-alevinqc |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-all |
shpc-registry automated BioContainers addition for bioconductor-all |
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GITHUB
|
quay.io/biocontainers/bioconductor-allelicimbalance |
shpc-registry automated BioContainers addition for bioconductor-allelicimbalance |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-allenpvc |
shpc-registry automated BioContainers addition for bioconductor-allenpvc |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-allmll |
shpc-registry automated BioContainers addition for bioconductor-allmll |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-alphabeta |
shpc-registry automated BioContainers addition for bioconductor-alphabeta |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-alphamissense.v2023.hg19 |
singularity registry hpc automated addition for bioconductor-alphamissense.v2023.hg19 |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alphamissense.v2023.hg38 |
singularity registry hpc automated addition for bioconductor-alphamissense.v2023.hg38 |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alpine |
shpc-registry automated BioContainers addition for bioconductor-alpine |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alpinedata |
shpc-registry automated BioContainers addition for bioconductor-alpinedata |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alps |
shpc-registry automated BioContainers addition for bioconductor-alps |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alpsnmr |
shpc-registry automated BioContainers addition for bioconductor-alpsnmr |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alsace |
shpc-registry automated BioContainers addition for bioconductor-alsace |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-altcdfenvs |
shpc-registry automated BioContainers addition for bioconductor-altcdfenvs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-alternativesplicingevents.hg19 |
shpc-registry automated BioContainers addition for bioconductor-alternativesplicingevents.hg19 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-alternativesplicingevents.hg38 |
shpc-registry automated BioContainers addition for bioconductor-alternativesplicingevents.hg38 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-amaretto |
shpc-registry automated BioContainers addition for bioconductor-amaretto |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-amountain |
shpc-registry automated BioContainers addition for bioconductor-amountain |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ampaffyexample |
shpc-registry automated BioContainers addition for bioconductor-ampaffyexample |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-amplican |
shpc-registry automated BioContainers addition for bioconductor-amplican |
pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ampliqueso |
shpc-registry automated BioContainers addition for bioconductor-ampliqueso |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-analysispageserver |
shpc-registry automated BioContainers addition for bioconductor-analysispageserver |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-anamir |
shpc-registry automated BioContainers addition for bioconductor-anamir |
gdalserver, pg_verify_checksums, testepsg, pg_standby, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, dap-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-anaquin |
shpc-registry automated BioContainers addition for bioconductor-anaquin |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ancombc |
shpc-registry automated BioContainers addition for bioconductor-ancombc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-aneufinder |
shpc-registry automated BioContainers addition for bioconductor-aneufinder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-aneufinderdata |
shpc-registry automated BioContainers addition for bioconductor-aneufinderdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-anf |
shpc-registry automated BioContainers addition for bioconductor-anf |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-animalcules |
shpc-registry automated BioContainers addition for bioconductor-animalcules |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-annaffy |
shpc-registry automated BioContainers addition for bioconductor-annaffy |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-annmap |
shpc-registry automated BioContainers addition for bioconductor-annmap |
my_print_defaults, mysql_config, perror |
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotate |
shpc-registry automated BioContainers addition for bioconductor-annotate |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotationdbi |
shpc-registry automated BioContainers addition for bioconductor-annotationdbi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotationfilter |
shpc-registry automated BioContainers addition for bioconductor-annotationfilter |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotationforge |
shpc-registry automated BioContainers addition for bioconductor-annotationforge |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotationfuncs |
shpc-registry automated BioContainers addition for bioconductor-annotationfuncs |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotationhub |
shpc-registry automated BioContainers addition for bioconductor-annotationhub |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotationhubdata |
shpc-registry automated BioContainers addition for bioconductor-annotationhubdata |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotationtools |
shpc-registry automated BioContainers addition for bioconductor-annotationtools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotatr |
shpc-registry automated BioContainers addition for bioconductor-annotatr |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-anopheles.db0 |
shpc-registry automated BioContainers addition for bioconductor-anopheles.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-anota |
shpc-registry automated BioContainers addition for bioconductor-anota |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-anota2seq |
shpc-registry automated BioContainers addition for bioconductor-anota2seq |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-antiprofiles |
shpc-registry automated BioContainers addition for bioconductor-antiprofiles |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-antiprofilesdata |
shpc-registry automated BioContainers addition for bioconductor-antiprofilesdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-anvil |
shpc-registry automated BioContainers addition for bioconductor-anvil |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-anvilbilling |
shpc-registry automated BioContainers addition for bioconductor-anvilbilling |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-anvilpublish |
shpc-registry automated BioContainers addition for bioconductor-anvilpublish |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-anvilworkflow |
singularity registry hpc automated addition for bioconductor-anvilworkflow |
hb-info, tjbench, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-apalyzer |
shpc-registry automated BioContainers addition for bioconductor-apalyzer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-apcomplex |
shpc-registry automated BioContainers addition for bioconductor-apcomplex |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-apeglm |
shpc-registry automated BioContainers addition for bioconductor-apeglm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-apl |
singularity registry hpc automated addition for bioconductor-apl |
geosop, geos-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-appreci8r |
shpc-registry automated BioContainers addition for bioconductor-appreci8r |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-arabidopsis.db0 |
shpc-registry automated BioContainers addition for bioconductor-arabidopsis.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-aracne.networks |
shpc-registry automated BioContainers addition for bioconductor-aracne.networks |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-aroma.light |
shpc-registry automated BioContainers addition for bioconductor-aroma.light |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-arrayexpress |
shpc-registry automated BioContainers addition for bioconductor-arrayexpress |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-arrayexpresshts |
shpc-registry automated BioContainers addition for bioconductor-arrayexpresshts |
jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/bioconductor-arraymvout |
shpc-registry automated BioContainers addition for bioconductor-arraymvout |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-arrayquality |
shpc-registry automated BioContainers addition for bioconductor-arrayquality |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-arrayqualitymetrics |
shpc-registry automated BioContainers addition for bioconductor-arrayqualitymetrics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-arraytools |
shpc-registry automated BioContainers addition for bioconductor-arraytools |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-arraytv |
shpc-registry automated BioContainers addition for bioconductor-arraytv |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-arrmdata |
shpc-registry automated BioContainers addition for bioconductor-arrmdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-arrmnormalization |
shpc-registry automated BioContainers addition for bioconductor-arrmnormalization |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-artms |
shpc-registry automated BioContainers addition for bioconductor-artms |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-asafe |
shpc-registry automated BioContainers addition for bioconductor-asafe |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-aseb |
shpc-registry automated BioContainers addition for bioconductor-aseb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-asgsca |
shpc-registry automated BioContainers addition for bioconductor-asgsca |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ashkenazimsonchr21 |
shpc-registry automated BioContainers addition for bioconductor-ashkenazimsonchr21 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-asics |
shpc-registry automated BioContainers addition for bioconductor-asics |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-asicsdata |
shpc-registry automated BioContainers addition for bioconductor-asicsdata |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-aspediafi |
shpc-registry automated BioContainers addition for bioconductor-aspediafi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-aspli |
shpc-registry automated BioContainers addition for bioconductor-aspli |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-assessorf |
shpc-registry automated BioContainers addition for bioconductor-assessorf |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-assessorfdata |
shpc-registry automated BioContainers addition for bioconductor-assessorfdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-asset |
shpc-registry automated BioContainers addition for bioconductor-asset |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-assign |
shpc-registry automated BioContainers addition for bioconductor-assign |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-asurat |
singularity registry hpc automated addition for bioconductor-asurat |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ataccogaps |
singularity registry hpc automated addition for bioconductor-ataccogaps |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, pandoc, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-atacseqqc |
shpc-registry automated BioContainers addition for bioconductor-atacseqqc |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-atacseqtfea |
singularity registry hpc automated addition for bioconductor-atacseqtfea |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-atena |
shpc-registry automated BioContainers addition for bioconductor-atena |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ath1121501.db |
shpc-registry automated BioContainers addition for bioconductor-ath1121501.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ath1121501cdf |
shpc-registry automated BioContainers addition for bioconductor-ath1121501cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ath1121501probe |
shpc-registry automated BioContainers addition for bioconductor-ath1121501probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-atlasrdf |
shpc-registry automated BioContainers addition for bioconductor-atlasrdf |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-atsnp |
shpc-registry automated BioContainers addition for bioconductor-atsnp |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-attract |
shpc-registry automated BioContainers addition for bioconductor-attract |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-aucell |
shpc-registry automated BioContainers addition for bioconductor-aucell |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-autonomics |
shpc-registry automated BioContainers addition for bioconductor-autonomics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-autotuner |
shpc-registry automated BioContainers addition for bioconductor-autotuner |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-awfisher |
shpc-registry automated BioContainers addition for bioconductor-awfisher |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-awst |
shpc-registry automated BioContainers addition for bioconductor-awst |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-baalchip |
shpc-registry automated BioContainers addition for bioconductor-baalchip |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bac |
shpc-registry automated BioContainers addition for bioconductor-bac |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bacon |
shpc-registry automated BioContainers addition for bioconductor-bacon |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bader |
shpc-registry automated BioContainers addition for bioconductor-bader |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-badregionfinder |
shpc-registry automated BioContainers addition for bioconductor-badregionfinder |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bags |
shpc-registry automated BioContainers addition for bioconductor-bags |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ballgown |
shpc-registry automated BioContainers addition for bioconductor-ballgown |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bambu |
shpc-registry automated BioContainers addition for bioconductor-bambu |
xgboost |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bamsignals |
shpc-registry automated BioContainers addition for bioconductor-bamsignals |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bandits |
shpc-registry automated BioContainers addition for bioconductor-bandits |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bandle |
singularity registry hpc automated addition for bioconductor-bandle |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff, hdp, hrepack, jpeg2hdf, paltohdf |
|
GITHUB
|
quay.io/biocontainers/bioconductor-banocc |
shpc-registry automated BioContainers addition for bioconductor-banocc |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-barcodetrackr |
shpc-registry automated BioContainers addition for bioconductor-barcodetrackr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-barley1cdf |
shpc-registry automated BioContainers addition for bioconductor-barley1cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-barley1probe |
shpc-registry automated BioContainers addition for bioconductor-barley1probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-basecallqc |
shpc-registry automated BioContainers addition for bioconductor-basecallqc |
pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-basespacer |
shpc-registry automated BioContainers addition for bioconductor-basespacer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-basic4cseq |
shpc-registry automated BioContainers addition for bioconductor-basic4cseq |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-basics |
shpc-registry automated BioContainers addition for bioconductor-basics |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-basicstan |
singularity registry hpc automated addition for bioconductor-basicstan |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-basicstarrseq |
shpc-registry automated BioContainers addition for bioconductor-basicstarrseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-basilisk |
shpc-registry automated BioContainers addition for bioconductor-basilisk |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-basilisk.utils |
shpc-registry automated BioContainers addition for bioconductor-basilisk.utils |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-batchelor |
shpc-registry automated BioContainers addition for bioconductor-batchelor |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-batchqc |
shpc-registry automated BioContainers addition for bioconductor-batchqc |
pandoc-citeproc, pandoc, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bayesknockdown |
shpc-registry automated BioContainers addition for bioconductor-bayesknockdown |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bayespeak |
shpc-registry automated BioContainers addition for bioconductor-bayespeak |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bayesspace |
shpc-registry automated BioContainers addition for bioconductor-bayesspace |
xgboost, glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-baynorm |
shpc-registry automated BioContainers addition for bioconductor-baynorm |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bayseq |
shpc-registry automated BioContainers addition for bioconductor-bayseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bbcanalyzer |
shpc-registry automated BioContainers addition for bioconductor-bbcanalyzer |
my_print_defaults, mysql_config, perror, wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bcellviper |
shpc-registry automated BioContainers addition for bioconductor-bcellviper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bcrank |
shpc-registry automated BioContainers addition for bioconductor-bcrank |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bcseq |
shpc-registry automated BioContainers addition for bioconductor-bcseq |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bdmmacorrect |
shpc-registry automated BioContainers addition for bioconductor-bdmmacorrect |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-beachmat.hdf5 |
singularity registry hpc automated addition for bioconductor-beachmat.hdf5 |
pcre2posix_test, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-beachmat |
shpc-registry automated BioContainers addition for bioconductor-beachmat |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-beadarray |
shpc-registry automated BioContainers addition for bioconductor-beadarray |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-beadarrayexampledata |
shpc-registry automated BioContainers addition for bioconductor-beadarrayexampledata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-beadarraysnp |
shpc-registry automated BioContainers addition for bioconductor-beadarraysnp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-beadarrayusecases |
shpc-registry automated BioContainers addition for bioconductor-beadarrayusecases |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-beaddatapackr |
shpc-registry automated BioContainers addition for bioconductor-beaddatapackr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-beadsorted.saliva.epic |
shpc-registry automated BioContainers addition for bioconductor-beadsorted.saliva.epic |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bearscc |
shpc-registry automated BioContainers addition for bioconductor-bearscc |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-beat |
shpc-registry automated BioContainers addition for bioconductor-beat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-beclear |
shpc-registry automated BioContainers addition for bioconductor-beclear |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-beer |
singularity registry hpc automated addition for bioconductor-beer |
jags, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-benchdamic |
shpc-registry automated BioContainers addition for bioconductor-benchdamic |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-benchmarkfdrdata2019 |
shpc-registry automated BioContainers addition for bioconductor-benchmarkfdrdata2019 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-beta7 |
shpc-registry automated BioContainers addition for bioconductor-beta7 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bg2 |
singularity registry hpc automated addition for bioconductor-bg2 |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bgafun |
shpc-registry automated BioContainers addition for bioconductor-bgafun |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bgeecall |
shpc-registry automated BioContainers addition for bioconductor-bgeecall |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bgeedb |
shpc-registry automated BioContainers addition for bioconductor-bgeedb |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bgmix |
shpc-registry automated BioContainers addition for bioconductor-bgmix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bgx |
shpc-registry automated BioContainers addition for bioconductor-bgx |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bhc |
shpc-registry automated BioContainers addition for bioconductor-bhc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bicare |
shpc-registry automated BioContainers addition for bioconductor-bicare |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bifet |
shpc-registry automated BioContainers addition for bioconductor-bifet |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biggr |
shpc-registry automated BioContainers addition for bioconductor-biggr |
diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bigmelon |
shpc-registry automated BioContainers addition for bioconductor-bigmelon |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bigmemoryextras |
shpc-registry automated BioContainers addition for bioconductor-bigmemoryextras |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bigpint |
shpc-registry automated BioContainers addition for bioconductor-bigpint |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bindingsitefinder |
shpc-registry automated BioContainers addition for bioconductor-bindingsitefinder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioassayr |
shpc-registry automated BioContainers addition for bioconductor-bioassayr |
rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biobase |
shpc-registry automated BioContainers addition for bioconductor-biobase |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biobroom |
shpc-registry automated BioContainers addition for bioconductor-biobroom |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biobtreer |
shpc-registry automated BioContainers addition for bioconductor-biobtreer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocancer |
shpc-registry automated BioContainers addition for bioconductor-biocancer |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocartaimage |
singularity registry hpc automated addition for bioconductor-biocartaimage |
pcre2posix_test, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, display, identify, import, magick, magick-script, mogrify, montage, convert, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocbaseutils |
singularity registry hpc automated addition for bioconductor-biocbaseutils |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocbook |
singularity registry hpc automated addition for bioconductor-biocbook |
deno, esbuild, quarto, quarto.js, sass, git2, pcre2posix_test, hb-info, tjbench, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioccasestudies |
shpc-registry automated BioContainers addition for bioconductor-bioccasestudies |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioccheck |
shpc-registry automated BioContainers addition for bioconductor-bioccheck |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocdockermanager |
shpc-registry automated BioContainers addition for bioconductor-biocdockermanager |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocfhir |
singularity registry hpc automated addition for bioconductor-biocfhir |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocfilecache |
shpc-registry automated BioContainers addition for bioconductor-biocfilecache |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocgenerics |
shpc-registry automated BioContainers addition for bioconductor-biocgenerics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocgraph |
shpc-registry automated BioContainers addition for bioconductor-biocgraph |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biochail |
singularity registry hpc automated addition for bioconductor-biochail |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biochubsshiny |
singularity registry hpc automated addition for bioconductor-biochubsshiny |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocinstaller |
shpc-registry automated BioContainers addition for bioconductor-biocinstaller |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocio |
shpc-registry automated BioContainers addition for bioconductor-biocio |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocneighbors |
shpc-registry automated BioContainers addition for bioconductor-biocneighbors |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioconcotk |
shpc-registry automated BioContainers addition for bioconductor-bioconcotk |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocor |
shpc-registry automated BioContainers addition for bioconductor-biocor |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocparallel |
shpc-registry automated BioContainers addition for bioconductor-biocparallel |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocpkgtools |
shpc-registry automated BioContainers addition for bioconductor-biocpkgtools |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocset |
shpc-registry automated BioContainers addition for bioconductor-biocset |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocsingular |
shpc-registry automated BioContainers addition for bioconductor-biocsingular |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocsklearn |
shpc-registry automated BioContainers addition for bioconductor-biocsklearn |
f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, h5clear |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocstyle |
shpc-registry automated BioContainers addition for bioconductor-biocstyle |
pandoc-citeproc, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocthis |
shpc-registry automated BioContainers addition for bioconductor-biocthis |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocversion |
shpc-registry automated BioContainers addition for bioconductor-biocversion |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocviews |
shpc-registry automated BioContainers addition for bioconductor-biocviews |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocworkflowtools |
shpc-registry automated BioContainers addition for bioconductor-biocworkflowtools |
pandoc-citeproc, pandoc, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodb |
shpc-registry automated BioContainers addition for bioconductor-biodb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbchebi |
shpc-registry automated BioContainers addition for bioconductor-biodbchebi |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbexpasy |
singularity registry hpc automated addition for bioconductor-biodbexpasy |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbhmdb |
shpc-registry automated BioContainers addition for bioconductor-biodbhmdb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbkegg |
shpc-registry automated BioContainers addition for bioconductor-biodbkegg |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodblipidmaps |
shpc-registry automated BioContainers addition for bioconductor-biodblipidmaps |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbmirbase |
singularity registry hpc automated addition for bioconductor-biodbmirbase |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbncbi |
singularity registry hpc automated addition for bioconductor-biodbncbi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbnci |
singularity registry hpc automated addition for bioconductor-biodbnci |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbuniprot |
shpc-registry automated BioContainers addition for bioconductor-biodbuniprot |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodist |
shpc-registry automated BioContainers addition for bioconductor-biodist |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioimagedbs |
shpc-registry automated BioContainers addition for bioconductor-bioimagedbs |
SvtAv1DecApp, SvtAv1EncApp, aomdec, aomenc, asn1Coding, asn1Decoding, asn1Parser, ffmpeg, ffprobe, h264dec, h264enc, lame, p11-kit, p11tool, trust, vpxdec, vpxenc, x264, x265, pandoc-server, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biomart |
shpc-registry automated BioContainers addition for bioconductor-biomart |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biomartgogenesets |
singularity registry hpc automated addition for bioconductor-biomartgogenesets |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biomformat |
shpc-registry automated BioContainers addition for bioconductor-biomformat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biomm |
shpc-registry automated BioContainers addition for bioconductor-biomm |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biomvcclass |
shpc-registry automated BioContainers addition for bioconductor-biomvcclass |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biomvrcns |
shpc-registry automated BioContainers addition for bioconductor-biomvrcns |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bionar |
singularity registry hpc automated addition for bioconductor-bionar |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bionero |
shpc-registry automated BioContainers addition for bioconductor-bionero |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bionet |
shpc-registry automated BioContainers addition for bioconductor-bionet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bionetstat |
shpc-registry automated BioContainers addition for bioconductor-bionetstat |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioplex |
shpc-registry automated BioContainers addition for bioconductor-bioplex |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioqc |
shpc-registry automated BioContainers addition for bioconductor-bioqc |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioseqclass |
shpc-registry automated BioContainers addition for bioconductor-bioseqclass |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biosigner |
shpc-registry automated BioContainers addition for bioconductor-biosigner |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biostrings |
shpc-registry automated BioContainers addition for bioconductor-biostrings |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biosvd |
shpc-registry automated BioContainers addition for bioconductor-biosvd |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biotip |
shpc-registry automated BioContainers addition for bioconductor-biotip |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biotmle |
shpc-registry automated BioContainers addition for bioconductor-biotmle |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biotmledata |
shpc-registry automated BioContainers addition for bioconductor-biotmledata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biovizbase |
shpc-registry automated BioContainers addition for bioconductor-biovizbase |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-birewire |
shpc-registry automated BioContainers addition for bioconductor-birewire |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-birta |
shpc-registry automated BioContainers addition for bioconductor-birta |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-birte |
shpc-registry automated BioContainers addition for bioconductor-birte |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biscuiteer |
shpc-registry automated BioContainers addition for bioconductor-biscuiteer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biscuiteerdata |
shpc-registry automated BioContainers addition for bioconductor-biscuiteerdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biseq |
shpc-registry automated BioContainers addition for bioconductor-biseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bitseq |
shpc-registry automated BioContainers addition for bioconductor-bitseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-blacksheepr |
shpc-registry automated BioContainers addition for bioconductor-blacksheepr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bladderbatch |
shpc-registry automated BioContainers addition for bioconductor-bladderbatch |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-blima |
shpc-registry automated BioContainers addition for bioconductor-blima |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-blimatestingdata |
shpc-registry automated BioContainers addition for bioconductor-blimatestingdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-blma |
shpc-registry automated BioContainers addition for bioconductor-blma |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bloodcancermultiomics2017 |
shpc-registry automated BioContainers addition for bioconductor-bloodcancermultiomics2017 |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bloodgen3module |
shpc-registry automated BioContainers addition for bioconductor-bloodgen3module |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bluster |
shpc-registry automated BioContainers addition for bioconductor-bluster |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bnbc |
shpc-registry automated BioContainers addition for bioconductor-bnbc |
mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, mpifort, mpic++, mpicc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bnem |
shpc-registry automated BioContainers addition for bioconductor-bnem |
diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bobafit |
singularity registry hpc automated addition for bioconductor-bobafit |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bodymaprat |
shpc-registry automated BioContainers addition for bioconductor-bodymaprat |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-borealis |
singularity registry hpc automated addition for bioconductor-borealis |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bovine.db |
shpc-registry automated BioContainers addition for bioconductor-bovine.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bovine.db0 |
shpc-registry automated BioContainers addition for bioconductor-bovine.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bovinecdf |
shpc-registry automated BioContainers addition for bioconductor-bovinecdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bovineprobe |
shpc-registry automated BioContainers addition for bioconductor-bovineprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bprmeth |
shpc-registry automated BioContainers addition for bioconductor-bprmeth |
pandoc-citeproc, pandoc, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-brain |
shpc-registry automated BioContainers addition for bioconductor-brain |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-brainflowprobes |
shpc-registry automated BioContainers addition for bioconductor-brainflowprobes |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-brainimager |
shpc-registry automated BioContainers addition for bioconductor-brainimager |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-brainimagerdata |
shpc-registry automated BioContainers addition for bioconductor-brainimagerdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-brainsaber |
shpc-registry automated BioContainers addition for bioconductor-brainsaber |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-brainstars |
shpc-registry automated BioContainers addition for bioconductor-brainstars |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-branchpointer |
shpc-registry automated BioContainers addition for bioconductor-branchpointer |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-breakpointr |
shpc-registry automated BioContainers addition for bioconductor-breakpointr |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-breakpointrdata |
shpc-registry automated BioContainers addition for bioconductor-breakpointrdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-breastcancermainz |
shpc-registry automated BioContainers addition for bioconductor-breastcancermainz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-breastcancernki |
shpc-registry automated BioContainers addition for bioconductor-breastcancernki |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-breastcancertransbig |
shpc-registry automated BioContainers addition for bioconductor-breastcancertransbig |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-breastcancerunt |
shpc-registry automated BioContainers addition for bioconductor-breastcancerunt |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-breastcancerupp |
shpc-registry automated BioContainers addition for bioconductor-breastcancerupp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-breastcancervdx |
shpc-registry automated BioContainers addition for bioconductor-breastcancervdx |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-brendadb |
shpc-registry automated BioContainers addition for bioconductor-brendadb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-brgedata |
shpc-registry automated BioContainers addition for bioconductor-brgedata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-brgenomics |
shpc-registry automated BioContainers addition for bioconductor-brgenomics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bridge |
shpc-registry automated BioContainers addition for bioconductor-bridge |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bridgedbr |
shpc-registry automated BioContainers addition for bioconductor-bridgedbr |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bronchialil13 |
shpc-registry automated BioContainers addition for bioconductor-bronchialil13 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-browserviz |
shpc-registry automated BioContainers addition for bioconductor-browserviz |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-browservizdemo |
shpc-registry automated BioContainers addition for bioconductor-browservizdemo |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bsgenome |
shpc-registry automated BioContainers addition for bioconductor-bsgenome |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bsseq |
shpc-registry automated BioContainers addition for bioconductor-bsseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bsseqdata |
shpc-registry automated BioContainers addition for bioconductor-bsseqdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bsubtiliscdf |
shpc-registry automated BioContainers addition for bioconductor-bsubtiliscdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bsubtilisprobe |
shpc-registry automated BioContainers addition for bioconductor-bsubtilisprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bubbletree |
shpc-registry automated BioContainers addition for bioconductor-bubbletree |
pandoc-citeproc, pandoc, wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bufferedmatrix |
shpc-registry automated BioContainers addition for bioconductor-bufferedmatrix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bufferedmatrixmethods |
shpc-registry automated BioContainers addition for bioconductor-bufferedmatrixmethods |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bugsigdbr |
shpc-registry automated BioContainers addition for bioconductor-bugsigdbr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bumhmm |
shpc-registry automated BioContainers addition for bioconductor-bumhmm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bumphunter |
shpc-registry automated BioContainers addition for bioconductor-bumphunter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bumpymatrix |
shpc-registry automated BioContainers addition for bioconductor-bumpymatrix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bus |
shpc-registry automated BioContainers addition for bioconductor-bus |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-buscorrect |
shpc-registry automated BioContainers addition for bioconductor-buscorrect |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-busparse |
shpc-registry automated BioContainers addition for bioconductor-busparse |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-busseq |
shpc-registry automated BioContainers addition for bioconductor-busseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cadd.v1.6.hg19 |
singularity registry hpc automated addition for bioconductor-cadd.v1.6.hg19 |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cadd.v1.6.hg38 |
singularity registry hpc automated addition for bioconductor-cadd.v1.6.hg38 |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cadra |
singularity registry hpc automated addition for bioconductor-cadra |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-caen |
shpc-registry automated BioContainers addition for bioconductor-caen |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cafe |
shpc-registry automated BioContainers addition for bioconductor-cafe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cagefightr |
shpc-registry automated BioContainers addition for bioconductor-cagefightr |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cageminer |
shpc-registry automated BioContainers addition for bioconductor-cageminer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cager |
shpc-registry automated BioContainers addition for bioconductor-cager |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-calib |
shpc-registry automated BioContainers addition for bioconductor-calib |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-calm |
shpc-registry automated BioContainers addition for bioconductor-calm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-camera |
shpc-registry automated BioContainers addition for bioconductor-camera |
zipcmp, zipmerge, ziptool, gif2hdf, glpsol, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-camthc |
shpc-registry automated BioContainers addition for bioconductor-camthc |
extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cancerclass |
shpc-registry automated BioContainers addition for bioconductor-cancerclass |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cancerdata |
shpc-registry automated BioContainers addition for bioconductor-cancerdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cancerinsilico |
shpc-registry automated BioContainers addition for bioconductor-cancerinsilico |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cancermutationanalysis |
shpc-registry automated BioContainers addition for bioconductor-cancermutationanalysis |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cancersubtypes |
shpc-registry automated BioContainers addition for bioconductor-cancersubtypes |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cand |
shpc-registry automated BioContainers addition for bioconductor-cand |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-canine.db |
shpc-registry automated BioContainers addition for bioconductor-canine.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-canine.db0 |
shpc-registry automated BioContainers addition for bioconductor-canine.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-canine2.db |
shpc-registry automated BioContainers addition for bioconductor-canine2.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-canine2cdf |
shpc-registry automated BioContainers addition for bioconductor-canine2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-canine2probe |
shpc-registry automated BioContainers addition for bioconductor-canine2probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-caninecdf |
shpc-registry automated BioContainers addition for bioconductor-caninecdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-canineprobe |
shpc-registry automated BioContainers addition for bioconductor-canineprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-caomicsv |
shpc-registry automated BioContainers addition for bioconductor-caomicsv |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cardelino |
singularity registry hpc automated addition for bioconductor-cardelino |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cardinal |
shpc-registry automated BioContainers addition for bioconductor-cardinal |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cardinalio |
singularity registry hpc automated addition for bioconductor-cardinalio |
pcre2posix_test, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cardinalworkflows |
shpc-registry automated BioContainers addition for bioconductor-cardinalworkflows |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-carnival |
shpc-registry automated BioContainers addition for bioconductor-carnival |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-casper |
shpc-registry automated BioContainers addition for bioconductor-casper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-catalyst |
shpc-registry automated BioContainers addition for bioconductor-catalyst |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-category |
shpc-registry automated BioContainers addition for bioconductor-category |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-categorycompare |
shpc-registry automated BioContainers addition for bioconductor-categorycompare |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage |
|
GITHUB
|
quay.io/biocontainers/bioconductor-causalr |
shpc-registry automated BioContainers addition for bioconductor-causalr |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cbaf |
shpc-registry automated BioContainers addition for bioconductor-cbaf |
extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cbea |
singularity registry hpc automated addition for bioconductor-cbea |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cbioportaldata |
shpc-registry automated BioContainers addition for bioconductor-cbioportaldata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cbnplot |
singularity registry hpc automated addition for bioconductor-cbnplot |
hb-info, tjbench, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cbpmanager |
shpc-registry automated BioContainers addition for bioconductor-cbpmanager |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccdata |
shpc-registry automated BioContainers addition for bioconductor-ccdata |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccfindr |
shpc-registry automated BioContainers addition for bioconductor-ccfindr |
aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info, opal_wrapper, orte-clean, orte-info, orte-server |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccimpute |
singularity registry hpc automated addition for bioconductor-ccimpute |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccl4 |
shpc-registry automated BioContainers addition for bioconductor-ccl4 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccmap |
shpc-registry automated BioContainers addition for bioconductor-ccmap |
xgboost, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccplotr |
singularity registry hpc automated addition for bioconductor-ccplotr |
pcre2posix_test, hb-info, glpsol, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccpromise |
shpc-registry automated BioContainers addition for bioconductor-ccpromise |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccrepe |
shpc-registry automated BioContainers addition for bioconductor-ccrepe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cctutorial |
shpc-registry automated BioContainers addition for bioconductor-cctutorial |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cdi |
singularity registry hpc automated addition for bioconductor-cdi |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celaref |
shpc-registry automated BioContainers addition for bioconductor-celaref |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celarefdata |
shpc-registry automated BioContainers addition for bioconductor-celarefdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celda |
shpc-registry automated BioContainers addition for bioconductor-celda |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celegans.db |
shpc-registry automated BioContainers addition for bioconductor-celegans.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celeganscdf |
shpc-registry automated BioContainers addition for bioconductor-celeganscdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-celegansprobe |
shpc-registry automated BioContainers addition for bioconductor-celegansprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellarepertorium |
shpc-registry automated BioContainers addition for bioconductor-cellarepertorium |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellbarcode |
shpc-registry automated BioContainers addition for bioconductor-cellbarcode |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellbaser |
shpc-registry automated BioContainers addition for bioconductor-cellbaser |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellbench |
shpc-registry automated BioContainers addition for bioconductor-cellbench |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celldex |
shpc-registry automated BioContainers addition for bioconductor-celldex |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellgrowth |
shpc-registry automated BioContainers addition for bioconductor-cellgrowth |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellhts2 |
shpc-registry automated BioContainers addition for bioconductor-cellhts2 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellid |
shpc-registry automated BioContainers addition for bioconductor-cellid |
geosop, geos-config, glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellity |
shpc-registry automated BioContainers addition for bioconductor-cellity |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellmapper |
shpc-registry automated BioContainers addition for bioconductor-cellmapper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellmapperdata |
shpc-registry automated BioContainers addition for bioconductor-cellmapperdata |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellmigration |
shpc-registry automated BioContainers addition for bioconductor-cellmigration |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellmixs |
shpc-registry automated BioContainers addition for bioconductor-cellmixs |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellnoptr |
shpc-registry automated BioContainers addition for bioconductor-cellnoptr |
diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellscape |
shpc-registry automated BioContainers addition for bioconductor-cellscape |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellscore |
shpc-registry automated BioContainers addition for bioconductor-cellscore |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celltrails |
shpc-registry automated BioContainers addition for bioconductor-celltrails |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celltree |
shpc-registry automated BioContainers addition for bioconductor-celltree |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellxgenedp |
singularity registry hpc automated addition for bioconductor-cellxgenedp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cemitool |
shpc-registry automated BioContainers addition for bioconductor-cemitool |
pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-censcyt |
shpc-registry automated BioContainers addition for bioconductor-censcyt |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cepo |
shpc-registry automated BioContainers addition for bioconductor-cepo |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cernanetsim |
shpc-registry automated BioContainers addition for bioconductor-cernanetsim |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cetf |
shpc-registry automated BioContainers addition for bioconductor-cetf |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, jpackage, curve_keygen, cups-config, ippeveprinter, ipptool, glpsol, f2py3.10 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ceu1kg |
shpc-registry automated BioContainers addition for bioconductor-ceu1kg |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ceu1kgv |
shpc-registry automated BioContainers addition for bioconductor-ceu1kgv |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ceuhm3 |
shpc-registry automated BioContainers addition for bioconductor-ceuhm3 |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cexor |
shpc-registry automated BioContainers addition for bioconductor-cexor |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cfassay |
shpc-registry automated BioContainers addition for bioconductor-cfassay |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cfdnakit |
singularity registry hpc automated addition for bioconductor-cfdnakit |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cfdnapro |
shpc-registry automated BioContainers addition for bioconductor-cfdnapro |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cftools |
singularity registry hpc automated addition for bioconductor-cftools |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cftoolsdata |
singularity registry hpc automated addition for bioconductor-cftoolsdata |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cgdv17 |
shpc-registry automated BioContainers addition for bioconductor-cgdv17 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cgen |
shpc-registry automated BioContainers addition for bioconductor-cgen |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cghbase |
shpc-registry automated BioContainers addition for bioconductor-cghbase |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cghcall |
shpc-registry automated BioContainers addition for bioconductor-cghcall |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cghmcr |
shpc-registry automated BioContainers addition for bioconductor-cghmcr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cghnormaliter |
shpc-registry automated BioContainers addition for bioconductor-cghnormaliter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cghregions |
shpc-registry automated BioContainers addition for bioconductor-cghregions |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-champ |
shpc-registry automated BioContainers addition for bioconductor-champ |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-champdata |
shpc-registry automated BioContainers addition for bioconductor-champdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-charge |
shpc-registry automated BioContainers addition for bioconductor-charge |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-charm |
shpc-registry automated BioContainers addition for bioconductor-charm |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-charmdata |
shpc-registry automated BioContainers addition for bioconductor-charmdata |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chemminedrugs |
shpc-registry automated BioContainers addition for bioconductor-chemminedrugs |
rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chemmineob |
singularity registry hpc automated addition for bioconductor-chemmineob |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, obfitall, obmm, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop, obrms, obrotamer, obrotate, obspectrophore, obsym, obtautomer, obthermo, roundtrip, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chemminer |
shpc-registry automated BioContainers addition for bioconductor-chemminer |
rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chetah |
shpc-registry automated BioContainers addition for bioconductor-chetah |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chic.data |
shpc-registry automated BioContainers addition for bioconductor-chic.data |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chic |
shpc-registry automated BioContainers addition for bioconductor-chic |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chicago |
shpc-registry automated BioContainers addition for bioconductor-chicago |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chicken.db |
shpc-registry automated BioContainers addition for bioconductor-chicken.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chicken.db0 |
shpc-registry automated BioContainers addition for bioconductor-chicken.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chickencdf |
shpc-registry automated BioContainers addition for bioconductor-chickencdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chickenprobe |
shpc-registry automated BioContainers addition for bioconductor-chickenprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chihaya |
singularity registry hpc automated addition for bioconductor-chihaya |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chimera |
shpc-registry automated BioContainers addition for bioconductor-chimera |
STAR, STARlong, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chimeraviz |
shpc-registry automated BioContainers addition for bioconductor-chimeraviz |
pandoc-citeproc, pandoc, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chimp.db0 |
shpc-registry automated BioContainers addition for bioconductor-chimp.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chimphumanbraindata |
shpc-registry automated BioContainers addition for bioconductor-chimphumanbraindata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipanalyser |
shpc-registry automated BioContainers addition for bioconductor-chipanalyser |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipcomp |
shpc-registry automated BioContainers addition for bioconductor-chipcomp |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipenrich.data |
shpc-registry automated BioContainers addition for bioconductor-chipenrich.data |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipenrich |
shpc-registry automated BioContainers addition for bioconductor-chipenrich |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipexoqual |
shpc-registry automated BioContainers addition for bioconductor-chipexoqual |
pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipexoqualexample |
shpc-registry automated BioContainers addition for bioconductor-chipexoqualexample |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chippeakanno |
shpc-registry automated BioContainers addition for bioconductor-chippeakanno |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipqc |
shpc-registry automated BioContainers addition for bioconductor-chipqc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipseeker |
shpc-registry automated BioContainers addition for bioconductor-chipseeker |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipseq |
shpc-registry automated BioContainers addition for bioconductor-chipseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipseqdbdata |
shpc-registry automated BioContainers addition for bioconductor-chipseqdbdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipseqr |
shpc-registry automated BioContainers addition for bioconductor-chipseqr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipseqspike |
shpc-registry automated BioContainers addition for bioconductor-chipseqspike |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-chipsim |
shpc-registry automated BioContainers addition for bioconductor-chipsim |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-chipxpress |
shpc-registry automated BioContainers addition for bioconductor-chipxpress |
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GITHUB
|
quay.io/biocontainers/bioconductor-chipxpressdata |
shpc-registry automated BioContainers addition for bioconductor-chipxpressdata |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-chopsticks |
shpc-registry automated BioContainers addition for bioconductor-chopsticks |
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GITHUB
|
quay.io/biocontainers/bioconductor-chrogps |
shpc-registry automated BioContainers addition for bioconductor-chrogps |
gio-launch-desktop, c89, c99 |
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GITHUB
|
quay.io/biocontainers/bioconductor-chromdraw |
shpc-registry automated BioContainers addition for bioconductor-chromdraw |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
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GITHUB
|
quay.io/biocontainers/bioconductor-chromheatmap |
shpc-registry automated BioContainers addition for bioconductor-chromheatmap |
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10306 container modules.