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GITHUB
|
adminer |
Database management in a single PHP file. |
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GITHUB
|
amazon/aws-cli |
The AWS Command Line Interface (AWS CLI) is a unified tool to manage your AWS services. |
aws, aws_completer |
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GITHUB
|
amdih/cp2k |
CP2K is a quantum chemistry and solid state physics software package that can perform atomistic simulations of solid state, liquid, molecular, periodic, material, crystal, and biological systems. |
cp2k.popt, cp2k.psmp.dbcsr_gpu, cp2k_shell.psmp, graph.psmp, grid_unittest.psmp, memory_utilities_unittest.psmp, xyz2dcd.psmp, cp2k.psmp, cp2k.psmp.no_dbcsr_gpu, dumpdcd.psmp, grid_miniapp.psmp, libcp2k_unittest.psmp, parallel_rng_types_unittest.psmp |
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GITHUB
|
amdih/gromacs |
GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. |
gmx |
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GITHUB
|
amdih/lammps |
LAMMPS is a classical molecular dynamics code with a focus on materials modeling. It's an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. |
lmp |
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GITHUB
|
amdih/namd |
NAMD is a molecular dynamics package designed for simulating the movement of biomolecules over time. |
charmrun, namd2 |
|
GITHUB
|
amdih/namd3 |
NAMD is a molecular dynamics package designed for simulating the movement of biomolecules over time. |
charmrun, namd3 |
|
GITHUB
|
amdih/pytorch |
PyTorch is a GPU accelerated tensor computational framework with a Python front end. |
python3, python |
|
GITHUB
|
bids/aa |
BIDS App containing an instance of the Automatic Analysis. (https://github.com/BIDS-Apps/aa) |
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GITHUB
|
bids/baracus |
Brain-Age Regression Analysis and Computation Utility Software (https://github.com/BIDS-Apps/baracus) |
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GITHUB
|
bids/brainiak-srm |
Shared Response Model (SRM) from the Brain Imaging Analysis Kit (BrainIAK) (https://github.com/BIDS-Apps/brainiak-srm) |
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GITHUB
|
bids/brainsautoworkup |
A BIDS App for running BRAINSAutoWorkup (https://github.com/BIDS-Apps/BRAINSAutoworkup) |
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GITHUB
|
bids/broccoli |
BROCCOLI is a software for analysis of fMRI (functional magnetic resonance imaging) data and is written in OpenCL (Open Computing Language). (https://github.com/BIDS-Apps/BROCCOLI) |
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GITHUB
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bids/freesurfer |
Surface reconstruction using Freesurfer |
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GITHUB
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bids/hcppipelines |
BIDS-ified HPC Piplines to process MRI data for the Human Connectome Project (https://github.com/BIDS-Apps/HCPPipelines) |
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GITHUB
|
bids/matlab-compiler-runtime |
Base image with Matlab compiler runtime (https://github.com/BIDS-Apps/matlab-compiler-runtime) |
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GITHUB
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bids/mrtrix3_connectome |
Generation and subsequent group analysis of structural connectomes generated from diffusion MRI data (via the MRtrix3 software package). https://github.com/BIDS-Apps/MRtrix3_connectome |
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GITHUB
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bids/niak |
The neuroimaging analysis kit. Pipeline for preprocessing of fMRI and structural MRI scans http://niak.simexp-lab.org/ (https://github.com/BIDS-Apps/niak) |
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GITHUB
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bids/pymvpa |
Take fMRI data and generates ROI based MultiVariate Pattern Analysis (MVPA) outputs (https://github.com/BIDS-Apps/PyMVPA) |
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GITHUB
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bids/rshrf |
Resting state HRF estimation and deconvolution (https://github.com/BIDS-Apps/rsHRF) |
rsHRF |
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GITHUB
|
bids/spm |
The implementation of the theoretical concepts of Statistical Parametric Mapping in a complete analysis package. |
spm12 |
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GITHUB
|
bids/tracula |
Implements Freesurfer's TRACULA (TRActs Constrained by UnderLying Anatomy) tool for cross-sectional as well as longitudinal (multi session) input data (https://github.com/BIDS-Apps/tracula) |
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GITHUB
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bids/validator |
A validator for BIDS (Brain Imaging Data Structure) datasets. |
bids-validator |
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GITHUB
|
couchdb |
CouchDB is a database that uses JSON for documents, an HTTP API, & JavaScript/declarative indexing. |
couchdb, couchdb.cmd, couchjs, remsh |
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GITHUB
|
elasticsearch |
Elasticsearch is a powerful open source search and analytics engine that makes data easy to explore. |
elasticsearch, elasticsearch-certgen, elasticsearch-certutil, elasticsearch-cli, elasticsearch-croneval, elasticsearch-env, elasticsearch-env-from-file, elasticsearch-keystore, elasticsearch-migrate, elasticsearch-node, elasticsearch-plugin, elasticsearch-saml-metadata, elasticsearch-setup-passwords, elasticsearch-shard, elasticsearch-sql-cli, elasticsearch-sql-cli-7.12.0.jar, elasticsearch-syskeygen, elasticsearch-users |
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GITHUB
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ghcr.io/autamus/abi-dumper |
ABI Dumper is a tool for dumping ABI information of an ELF object containing DWARF debug info. |
abi-dumper |
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GITHUB
|
ghcr.io/autamus/abyss |
ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. |
abyss-align, abyss-bloom, abyss-bloom-dbg, abyss-bloom-dist.mk, abyss-bowtie, abyss-bowtie2, abyss-bwa, abyss-bwamem, abyss-bwasw, abyss-db-csv, abyss-db-txt, abyss-dida, abyss-fac, abyss-fatoagp, abyss-filtergraph, abyss-fixmate, abyss-fixmate-ssq, abyss-gapfill, abyss-gc, abyss-index, abyss-junction, abyss-kaligner, abyss-layout, abyss-longseqdist, abyss-map, abyss-map-ssq, abyss-mergepairs, abyss-overlap, abyss-paired-dbg, abyss-paired-dbg-mpi, abyss-pe, abyss-samtoafg, abyss-scaffold, abyss-sealer, abyss-stack-size, abyss-tabtomd, abyss-todot, abyss-tofastq |
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GITHUB
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ghcr.io/autamus/accumulo |
Apache Accumulo is a sorted, distributed key/value store that provides robust, scalable data storage and retrieval. |
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GITHUB
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ghcr.io/autamus/addrwatch |
addrwatch is a similar software to arpwatch. It main purpose is to monitor network and log ethernet/ip pairings. |
addrwatch, addrwatch_stdout, addrwatch_syslog |
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GITHUB
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ghcr.io/autamus/adios |
The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation. |
adios_config, adios_lint, adios_list_methods, adios_list_methods_nompi, adios_list_methods_readonly, adios_list_methods_readonly_nompi |
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GITHUB
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ghcr.io/autamus/adios2 |
The Adaptable Input Output System version 2, developed in the Exascale Computing Program |
adios2-config, adios2_deactivate_bp, adios2_iotest, adios2_reorganize, adios2_reorganize_mpi |
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GITHUB
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ghcr.io/autamus/admixtools |
ADMIXTOOLS is a collection of programs which use genetic data to infer how populations are related to one another. |
convertf, dowtjack, expfit.sh, gcount, grabpars, gsl-config, gsl-histogram, gsl-randist, jackdiff, kimf, mergeit, mkpretty, qp3Pop, qp4diff, qpAdm, qpBound, qpDpart, qpDstat, qpF4ratio, qpGraph, qpWave, qpdslow, qpff3base, qpfmv, qpfstats, qpreroot, rexpfit.r, rolloff, rolloffp, simpjack2, twtable, wtjack.pl |
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GITHUB
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ghcr.io/autamus/advancecomp |
AdvanceCOMP is a set of cross-platform command line data (re-)compression tools. |
advdef, advmng, advpng, advzip |
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GITHUB
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ghcr.io/autamus/alan |
A simple in-terminal alignment viewer. |
alan |
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GITHUB
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ghcr.io/autamus/alps |
Algorithms and Libraries for Physics Simulations. |
alpspython |
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GITHUB
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ghcr.io/autamus/amrex |
AMReX is a publicly available software framework designed for building massively parallel block- structured adaptive mesh refinement (AMR) applications. |
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GITHUB
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ghcr.io/autamus/angsd |
ANGSD is a software for analyzing next generation sequencing data. |
angsd |
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GITHUB
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ghcr.io/autamus/arborx |
ArborX is a performance-portable library for geometric search |
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GITHUB
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ghcr.io/autamus/argobots |
A lightweight runtime system that supports integrated computation and data movement with massive concurrency. |
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GITHUB
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ghcr.io/autamus/aria2 |
aria2 is a lightweight multi-protocol & multi-source command-line download utility. |
aria2c |
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GITHUB
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ghcr.io/autamus/ascent |
An open source many-core capable lightweight in situ visualization and analysis infrastructure for multi-physics HPC simulations. |
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GITHUB
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ghcr.io/autamus/astral |
ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees. |
astral |
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GITHUB
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ghcr.io/autamus/bart |
BART: Toolbox for Computational Magnetic Resonance Imaging |
bart, bartview |
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GITHUB
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ghcr.io/autamus/bbmap |
A suite of fast, multithreaded bioinformatics tools designed for analysis of DNA and RNA sequence data. |
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GITHUB
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ghcr.io/autamus/bcftools |
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. |
bcftools |
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GITHUB
|
ghcr.io/autamus/beast2 |
BEAST 2 is a cross-platform program for Bayesian phylogenetic analysis of molecular sequences. |
beast, beasti, beauti, densitree, treeannotator |
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GITHUB
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ghcr.io/autamus/bedops |
BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. |
bam2bed, bam2bed_gnuParallel, bam2bed_sge, bam2bed_slurm, bam2starch, bam2starch_gnuParallel, bam2starch_sge, bam2starch_slurm, bedextract, bedmap, bedops, closest-features, convert2bed, gff2bed, gff2starch, gtf2bed, gtf2starch, gvf2bed, gvf2starch, psl2bed, psl2starch, rmsk2bed, rmsk2starch, sam2bed, sam2starch, sort-bed, starch, starch-diff, starchcat, starchcluster_gnuParallel, starchcluster_sge, starchcluster_slurm, starchstrip, unstarch, update-sort-bed-migrate-candidates, update-sort-bed-slurm, update-sort-bed-starch-slurm, vcf2bed, vcf2starch, wig2bed, wig2starch |
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GITHUB
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ghcr.io/autamus/bedtools2 |
The swiss army knife for genome arithmetic |
annotateBed, bamToBed, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, fastaFromBed, flankBed, genomeCoverageBed, intersectBed, linksBed, mapBed, maskFastaFromBed, mergeBed, multiIntersectBed, nucBed, pairToBed, randomBed, shiftBed, shuffleBed, slopBed, sortBed, subtractBed, unionBedGraphs, windowBed |
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GITHUB
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ghcr.io/autamus/bismark |
Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step. |
bismark, bismark_genome_preparation, bismark_methylation_extractor, bismark2bedGraph, bismark2report, bismark2summary |
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GITHUB
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ghcr.io/autamus/bolt |
BOLT targets a high-performing OpenMP implementation, especially specialized for fine-grain parallelism. |
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GITHUB
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ghcr.io/autamus/boost |
The Boost project provides free peer-reviewed portable C++ source libraries. |
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GITHUB
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ghcr.io/autamus/bowtie2 |
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. |
bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s |
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GITHUB
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ghcr.io/autamus/bracken |
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample. |
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GITHUB
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ghcr.io/autamus/bwa |
BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. |
bwa |
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GITHUB
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ghcr.io/autamus/cabana |
The Exascale Co-Design Center for Particle Applications Toolkit |
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GITHUB
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ghcr.io/autamus/caliper |
Caliper is a program instrumentation and performance measurement framework. |
cali-query, cali-stat |
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GITHUB
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ghcr.io/autamus/cantera |
Cantera is an open-source collection of object-oriented software tools for problems involving chemical kinetics, thermodynamics, and transport processes. |
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GITHUB
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ghcr.io/autamus/cctools |
The Cooperative Computing Tools (CCTools) are a collection of programs that enable large scale distributed computing on systems such as clusters, clouds, and grids. |
c_rehash, captoinfo, catalog_query, catalog_server, catalog_update, ccache-swig, cctools_gpu_autodetect, chirp, chirp_audit_cluster, chirp_benchmark, chirp_distribute, chirp_fuse, chirp_get, chirp_put, chirp_server, chirp_server_hdfs, chirp_status, chirp_stream_files, chroot_package_run, clear, condor_submit_makeflow, condor_submit_workers, confuga_adm, corelist, cpan, cpanm |
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GITHUB
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ghcr.io/autamus/cdo |
CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data. |
cdo |
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GITHUB
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ghcr.io/autamus/cfitsio |
CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format. |
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GITHUB
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ghcr.io/autamus/circos |
Circos is a software package for visualizing data and information. |
circos |
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GITHUB
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ghcr.io/autamus/clhep |
CLHEP is a C++ library that provides utility classes for general numerical programming, vector arithmetic, geometry, pseudorandom number generation, and linear algebra, specifically targeted for high energy physics simulation and analysis software. |
Cast-config, Evaluator-config, Exceptions-config, GenericFunctions-config, Geometry-config, Matrix-config, Random-config, RandomObjects-config, RefCount-config, Units-config, Utility-config, Vector-config, clhep-config |
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GITHUB
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ghcr.io/autamus/clingo |
An ASP system to ground and solve logic programs. |
clingo, gringo |
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GITHUB
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ghcr.io/autamus/cloc |
cloc is a command line program that takes file, directory, and/or archive names as inputs. |
cloc |
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GITHUB
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ghcr.io/autamus/conduit |
Conduit is an open source project from Lawrence Livermore National Laboratory that provides an intuitive model for describing hierarchical scientific data in C++, C, Fortran, and Python. |
conduit_blueprint_verify, conduit_relay_entangle.py, conduit_relay_io_convert, conduit_relay_io_ls, conduit_relay_node_viewer, conduit_staging, conduit_staging.sh |
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GITHUB
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ghcr.io/autamus/corset |
Corset is a command-line program to go from a de novo transcriptome assembly to gene-level counts. |
corset, corset_fasta_ID_changer |
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GITHUB
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ghcr.io/autamus/cowsay |
What does the cow say? |
cowsay |
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GITHUB
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ghcr.io/autamus/cufflinks |
Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. |
cuffcompare, cuffdiff, cufflinks, cuffmerge, cuffnorm, cuffquant |
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GITHUB
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ghcr.io/autamus/curl |
cURL is a computer software project providing a library and command-line tool for transferring data using various network protocols. The name stands for 'Client URL', which was first released in 1997. |
c_rehash, curl, curl-config |
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GITHUB
|
ghcr.io/autamus/dakota |
The Dakota project delivers both state-of-the-art research and robust, usable software for optimization and UQ. Broadly, the Dakota software's advanced parametric analyses enable design exploration, model calibration, risk analysis, and quantification of margins and uncertainty with computational models. |
dakota, dakota_library_mode, dakota_library_split, dakota_order_input, dakota_restart_util |
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GITHUB
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ghcr.io/autamus/datatransferkit |
DataTransferKit is an open-source software library of parallel solution transfer services for multiphysics simulations |
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GITHUB
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ghcr.io/autamus/diamond |
A sequence aligner for protein and translated DNA searches, designed for high performance analysis of big sequence data. |
diamond |
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GITHUB
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ghcr.io/autamus/dyninst |
DyninstAPI - Tools for binary instrumentation, analysis, and modification. |
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GITHUB
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ghcr.io/autamus/eagle |
Explicit Alternative Genome Likelihood Evaluator |
eagle, eagle-nm, eagle-rc |
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GITHUB
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ghcr.io/autamus/ed |
GNU ed is a line-oriented text editor used to create, display, modify and otherwise manipulate text files, both interactively and via shell scripts https://www.gnu.org/software/ed. |
ed, red |
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GITHUB
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ghcr.io/autamus/emacs |
The Emacs programmable text editor. https://www.gnu.org/software/emacs |
ebrowse, emacs, emacsclient, etags |
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GITHUB
|
ghcr.io/autamus/faodel |
Flexible, Asynchronous, Object Data-Exchange Libraries |
faodel |
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GITHUB
|
ghcr.io/autamus/fastqc |
A quality control tool for high throughput sequence data. |
fastqc |
|
GITHUB
|
ghcr.io/autamus/ffmpeg |
FFmpeg is a free and open-source software project consisting of a large suite of libraries and programs for handling video, audio, and other multimedia files and streams. |
ffmpeg, ffprobe |
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GITHUB
|
ghcr.io/autamus/flit |
Floating-point Litmus Tests (FLiT) is a C++ test infrastructure for detecting variability in floating-point code caused by variations in compiler code generation, hardware and execution environments. |
flit |
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GITHUB
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ghcr.io/autamus/fraggenescan |
An application for finding (fragmented) genes in short reads. |
|
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GITHUB
|
ghcr.io/autamus/gasnet |
GASNet is a language-independent, networking middleware layer that provides network-independent, high-performance communication primitives including Remote Memory Access (RMA) and Active Messages (AM). |
gasnet_trace, gasnet_trace.pl |
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GITHUB
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ghcr.io/autamus/gatk |
GATK (pronounced 'Gee-ay-tee-kay', not 'Gat-kay'), stands for GenomeAnalysisToolkit. It is a collection of command-line tools for analyzing high-throughput sequencing data with a primary focus on variant discovery. |
gatk |
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GITHUB
|
ghcr.io/autamus/gawk |
gawk is the GNU implementation of awk. The awk utility interprets a special-purpose programming language that makes it possible to handle simple data-reformatting jobs with just a few lines of code. https://www.gnu.org/software/gawk/ |
gawk |
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GITHUB
|
ghcr.io/autamus/gcc |
The GNU Compiler Collection |
c++, cpp, g++, gcc, gcc-ar, gcc-nm, gcc-ranlib, gcov, gcov-dump, gcov-tool, gfortran, zstd |
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GITHUB
|
ghcr.io/autamus/gdal |
GDAL is a translator library for raster and vector geospatial data formats that is released under an X/MIT style Open Source License by the Open Source Geospatial Foundation. |
gdal-config, gdal_contour, gdal_create, gdal_grid, gdal_rasterize, gdal_translate, gdal_viewshed, gdaladdo, gdalbuildvrt, gdaldem, gdalenhance, gdalinfo, gdallocationinfo, gdalmanage, gdalmdiminfo, gdalmdimtranslate, gdalsrsinfo, gdaltindex, gdaltransform, gdalwarp |
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GITHUB
|
ghcr.io/autamus/geant4 |
Geant4 is a platform for the simulation of the passage of particles through matter using Monte Carlo methods. |
Cast-config, CreateDOMDocument, DOMCount, DOMPrint, EnumVal, Evaluator-config, Exceptions-config, GenericFunctions-config, Geometry-config, Matrix-config, MemParse, PParse, PSVIWriter, Random-config, RandomObjects-config, Redirect, RefCount-config, SAX2Count, SAX2Print, SAXCount, SAXPrint, SCMPrint, SEnumVal, StdInParse, Units-config, Utility-config, Vector-config, XInclude, geant4-config, geant4.csh, geant4.sh |
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GITHUB
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ghcr.io/autamus/geos |
GEOS is a C++11 library for performing operations on two-dimensional vector geometries. |
geos-config |
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GITHUB
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ghcr.io/autamus/ginkgo |
High-performance linear algebra library for manycore systems, with a focus on sparse solution of linear systems. |
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GITHUB
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ghcr.io/autamus/git |
Git is software for tracking changes in any set of files, usually used for coordinating work among programmers collaboratively developing source code during software development. Its goals include speed, data integrity, and support for distributed, non-linear workflows. |
git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack |
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GITHUB
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ghcr.io/autamus/glpk |
The GLPK package is a set of routines written in ANSI C and organized in the form of a callable library. This package is intended for solving large-scale linear programming (LP), mixed integer linear programming (MIP), and other related problems. |
glpsol |
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GITHUB
|
ghcr.io/autamus/gmp |
GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating-point numbers. |
curl |
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GITHUB
|
ghcr.io/autamus/gnuplot |
Gnuplot is a portable command-line driven graphing utility for Linux, OS/2, MS Windows, OSX, VMS, and many other platforms. |
gnuplot |
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GITHUB
|
ghcr.io/autamus/gotcha |
C software library for shared library function wrapping, enables tools to intercept calls into shared libraries |
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GITHUB
|
ghcr.io/autamus/graphviz |
Graphviz is open source graph visualization software. |
gc, gml2gv, graphml2gv, gv2gml, gv2gxl, gvcolor, gvgen, gvmap, gvmap.sh, gvpack, gvpr, gxl2dot, gxl2gv |
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GITHUB
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ghcr.io/autamus/grass |
GRASS GIS (https://grass.osgeo.org/) is a Geographic Information System used for geospatial data management and analysis, image processing, graphics/map production, spatial modeling, and visualization. |
grass78 |
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GITHUB
|
ghcr.io/autamus/gromacs |
A versatile package to perform molecular dynamics. |
|
|
GITHUB
|
ghcr.io/autamus/gsl |
The GNU Scientific Library. |
gsl-config, gsl-histogram, gsl-randist |
|
GITHUB
|
ghcr.io/autamus/hdf5 |
HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections. |
h5clear, h5copy, h5debug, h5diff, h5dump, h5format_convert, h5import, h5jam, h5ls, h5mkgrp, h5pcc, h5perf, h5perf_serial, h5redeploy, h5repack, h5repart, h5stat, h5unjam |
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GITHUB
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ghcr.io/autamus/heaptrack |
Heaptrack traces all memory allocations and annotates these events with stack traces. |
heaptrack, heaptrack_print |
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GITHUB
|
ghcr.io/autamus/hisat2 |
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes as well as to a single reference genome. |
hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, hisatgenotype.py, hisatgenotype_build_genome.py, hisatgenotype_extract_reads.py, hisatgenotype_extract_vars.py, hisatgenotype_hla_cyp.py, hisatgenotype_locus.py |
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GITHUB
|
ghcr.io/autamus/hmmer |
HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. |
hmmalign, hmmbuild, hmmconvert, hmmemit, hmmfetch, hmmlogo, hmmpgmd, hmmpgmd_shard, hmmpress, hmmscan, hmmsearch, hmmsim, hmmstat |
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GITHUB
|
ghcr.io/autamus/hpctoolkit |
HPCToolkit is an integrated suite of tools for measurement and analysis of program performance on computers ranging from multicore desktop systems to the nation's largest supercomputers. |
hello, hpclink, hpcprof, hpcrun, hpcstruct, hpcviewer |
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GITHUB
|
ghcr.io/autamus/hpx |
C++ runtime system for parallel and distributed applications. |
hpxcxx, hpxrun.py |
|
GITHUB
|
ghcr.io/autamus/htop |
htop is an interactive text-mode process viewer for Unix systems. https://github.com/hishamhm/htop |
htop |
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GITHUB
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ghcr.io/autamus/htslib |
A C library for reading/writing high-throughput sequencing data. |
htsfile |
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GITHUB
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ghcr.io/autamus/hypre |
A library of high performance preconditioners and solvers featuring multigrid methods for the solution of large, sparse linear systems of equations on massively parallel computers. |
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GITHUB
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ghcr.io/autamus/igraph |
igraph is a library collection for creating and manipulating graphs and analyzing networks. It is written in C and also exists as Python and R packages. |
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GITHUB
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ghcr.io/autamus/intel-mkl |
Intel oneAPI Math Kernel Library, formerly just Intel Math Kernel Library, is a library of optimized math routines for science, engineering, and financial applications. |
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GITHUB
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ghcr.io/autamus/ior |
IOR is a parallel IO benchmark that can be used to test the performance of parallel storage systems using various interfaces and access patterns. |
ior |
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GITHUB
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ghcr.io/autamus/iq-tree |
IQ-TREE (http://www.iqtree.org, last accessed February 6, 2020) is a user-friendly and widely used software package for phylogenetic inference using maximum likelihood. |
iq-tree2 |
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GITHUB
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ghcr.io/autamus/jags |
Just Another Gibbs Sampler. A program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation. |
jags |
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GITHUB
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ghcr.io/autamus/jasper |
JasPer is a collection of software (i.e., a library and application programs) for the coding and manipulation of images. |
jasper, jpegtran |
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GITHUB
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ghcr.io/autamus/julia |
Julia is a high-level, high-performance, dynamic programming language. |
julia |
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GITHUB
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ghcr.io/autamus/kallisto |
kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. |
kallisto |
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GITHUB
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ghcr.io/autamus/kraken2 |
Kraken 2 is the newest version of Kraken, a taxonomic classification system using exact k-mer matches to achieve high accuracy and fast classification speeds. |
kraken2, kraken2-build, kraken2-inspect, kraken2lib.pm |
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GITHUB
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ghcr.io/autamus/lammps |
LAMMPS is a classical molecular dynamics code with a focus on materials modeling. |
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GITHUB
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ghcr.io/autamus/legion |
Legion is a data-centric parallel programming system for writing portable high performance programs targeted at distributed heterogeneous architectures. |
legion_prof.py, legion_serializer.py, legion_spy.py |
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GITHUB
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ghcr.io/autamus/libnrm |
Libnrm, the application instrumentation library for the Node Resource Manager(NRM). |
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GITHUB
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ghcr.io/autamus/libpng |
libpng is the official PNG reference library. |
libpng-config, libpng16-config, png-fix-itxt, pngfix |
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GITHUB
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ghcr.io/autamus/libquo |
QUO (as in status quo) is a runtime library that aids in accommodating thread-level heterogeneity in dynamic, phased MPI+X applications comprising single- and multi-threaded libraries. |
quo-info |
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GITHUB
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ghcr.io/autamus/libtiff |
Libtiff is a library for reading and writing Tagged Image File Format (abbreviated TIFF) files. |
fax2tiff, ppm2tiff, raw2tiff, tiff2bw, tiff2pdf, tiff2ps, tiff2rgba, tiffcmp, tiffcp, tiffcrop, tiffdither, tiffdump, tiffinfo, tiffmedian, tiffset, tiffsplit |
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GITHUB
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ghcr.io/autamus/libunwind |
A portable and efficient C programming interface (API) to determine the call-chain of a program. |
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GITHUB
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ghcr.io/autamus/libxpm |
The X PixMap image format is an extension of the monochrome X BitMap format specified in the X protocol, and is commonly used in traditional X applications. |
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GITHUB
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ghcr.io/autamus/lmod |
The Persistence of Vision Ray Tracer, most commonly acronymed as POV-Ray, is a cross-platform ray-tracing program that generates images from a text-based scene description. |
module |
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GITHUB
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ghcr.io/autamus/loki |
Loki is a C++ library of designs, containing flexible implementations of common design patterns and idioms. |
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GITHUB
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ghcr.io/autamus/lp-solve |
Lp_solve is freely available (under LGPL 2) software for solving linear, integer and mixed integer programs. |
lp_solve |
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GITHUB
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ghcr.io/autamus/mafft |
MAFFT is a multiple sequence alignment program for unix-like operating systems. |
mafft, mafft-distance, mafft-einsi, mafft-fftns, mafft-fftnsi, mafft-ginsi, mafft-linsi, mafft-nwns, mafft-nwnsi, mafft-profile, mafft-qinsi, mafft-xinsi |
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GITHUB
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ghcr.io/autamus/meme |
The MEME suite provides online tools for discovering and using protein and DNA sequence motifs. |
meme, meme-chip, memhog |
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GITHUB
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ghcr.io/autamus/mercurial |
Mercurial is a distributed revision control tool for software developers. |
hg |
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GITHUB
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ghcr.io/autamus/mercury |
Mercury is a C library for implementing RPC, optimized for HPC |
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GITHUB
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ghcr.io/autamus/metall |
A Persistent Memory Allocator For Data-Centric Analytics |
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GITHUB
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ghcr.io/autamus/migrate |
Migrate estimates effective population sizes and past migration rates between n population assuming a migration matrix model with asymmetric migration rates and different subpopulation sizes |
migrate-n |
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GITHUB
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ghcr.io/autamus/mothur |
A single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community. |
mothur |
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GITHUB
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ghcr.io/autamus/mpc |
mithi/mpc: A software pipeline using the Model Predictive Control method to drive a car around a virtual track. |
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GITHUB
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ghcr.io/autamus/mpfr |
The MPFR library is a C library for multiple-precision floating-point computations with correct rounding. |
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GITHUB
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ghcr.io/autamus/mummer |
MUMmer is a system for rapidly aligning entire genomes. |
mummer, mummerplot |
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GITHUB
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ghcr.io/autamus/muscle |
Multiple Sequence Alignment. |
muscle |
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GITHUB
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ghcr.io/autamus/nco |
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nc-config, ncap2, ncatted, ncbo, ncclimo, nccopy, ncdiff, ncdump, ncea, ncecat, nces, ncflint, ncgen, ncgen3, ncks, ncpdq, ncra, ncrcat, ncremap, ncrename, ncurses6-config, ncursesw6-config, ncwa |
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GITHUB
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ghcr.io/autamus/ninja |
Ninja is a small build system with a focus on speed. |
ninja, ninja-build |
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GITHUB
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ghcr.io/autamus/node-js |
A JavaScript runtime built on Chrome's V8 JavaScript engine. |
node |
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GITHUB
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ghcr.io/autamus/octave |
GNU Octave is a high-level interpreted language, primarily intended for numerical computations (like an open source Matlab) |
octave, octave-6.2.0, octave-cli, octave-cli-6.2.0, octave-config, octave-config-6.2.0 |
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GITHUB
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ghcr.io/autamus/omega-h |
Omega_h is a C++11 library providing data structures and algorithms for adaptive discretizations. |
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GITHUB
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ghcr.io/autamus/openbabel |
Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas. |
obabel, obconformer, obdistgen, obenergy, obfit, obfitall, obgen, obgrep, obminimize, obmm, obprobe, obprop, obrms, obrotamer, obrotate, obspectrophore, obsym, obtautomer, obthermo |
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GITHUB
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ghcr.io/autamus/opencv |
OpenCV is a library of programming functions mainly aimed at real-time computer vision. Originally developed by Intel, it was later supported by Willow Garage then Itseez. |
opencv_version, setup_vars_opencv4.sh |
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GITHUB
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ghcr.io/autamus/openjdk |
Open Java Development Kit |
jaotc, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jdeps, jfr, jhsdb, jimage, jinfo, jjs, jlink, jmap, jmod, jps, jrunscript, jshell, jstack, jstat, jstatd |
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GITHUB
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ghcr.io/autamus/openmpi |
An open source Message Passing Interface implementation. |
mpiCC, mpic++, mpicc, mpicxx, mpiexec, mpif77, mpif90, mpifort, mpirun, ompi-clean, ompi-server, ompi_info |
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GITHUB
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ghcr.io/autamus/pandaseq |
A program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. |
pandaseq, pandaseq-checkid, pandaseq-diff, pandaseq-hang, pandaxs |
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GITHUB
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ghcr.io/autamus/papi |
Performance Application Programming Interface. |
papi_avail, papi_clockres, papi_command_line, papi_component_avail, papi_cost, papi_decode, papi_error_codes, papi_event_chooser, papi_hl_output_writer.py, papi_mem_info, papi_multiplex_cost, papi_native_avail, papi_version, papi_xml_event_info |
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GITHUB
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ghcr.io/autamus/papyrus |
Parallel Aggregate Persistent Storage |
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GITHUB
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ghcr.io/autamus/parallel-netcdf |
PnetCDF (Parallel netCDF) is a high-performance parallel I/O library for accessing files in format compatibility with Unidata's NetCDF, specifically the formats of CDF-1, 2, and 5. |
pnetcdf-config, pnetcdf_version |
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GITHUB
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ghcr.io/autamus/pdt |
Program Database Toolkit (PDT) is a framework for analyzing source code written in several programming languages and for making rich program knowledge accessible to developers of static and dynamic analysis tools. |
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GITHUB
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ghcr.io/autamus/perl |
The Perl programming language. |
perl, perlbug, perldoc, perlivp, perlthanks |
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GITHUB
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ghcr.io/autamus/petsc |
PETSc is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations. |
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GITHUB
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ghcr.io/autamus/phist |
The Pipelined, Hybrid-parallel Iterative Solver Toolkit provides implementations of and interfaces to block iterative solvers for sparse linear and eigenvalue problems. |
phist_Danasazi_krylov_schur, phist_Danasazi_lobpcg, phist_Dbelos_bgmres, phist_Dbelos_bpcg, phist_Dblockedbicgstab, phist_Dblockedgmres, phist_Dblockedpcg, phist_Dsimple_lanczos, phist_Dsubspacejada, phist_carp_cg |
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GITHUB
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ghcr.io/autamus/picard |
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. |
picard, picard.jar |
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GITHUB
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ghcr.io/autamus/plasma |
Parallel Linear Algebra Software for Multicore Architectures, PLASMA is a software package for solving problems in dense linear algebra using multicore processors and Xeon Phi coprocessors. |
plasmatest |
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GITHUB
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ghcr.io/autamus/plink |
PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. |
plink |
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GITHUB
|
ghcr.io/autamus/poppler |
Poppler is a free software utility library for rendering Portable Document Format (PDF) documents. |
pdfattach, pdfdetach, pdffonts, pdfimages, pdfinfo, pdfseparate, pdftohtml, pdftops, pdftotext, pdfunite, png-fix-itxt, pngfix |
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GITHUB
|
ghcr.io/autamus/povray |
The Persistence of Vision Ray Tracer, most commonly acronymed as POV-Ray, is a cross-platform ray-tracing program that generates images from a text-based scene description. |
povray |
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GITHUB
|
ghcr.io/autamus/precice |
preCICE (Precise Code Interaction Coupling Environment) is a coupling library for partitioned multi-physics simulations. |
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GITHUB
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ghcr.io/autamus/prodigal |
Prodigal Gene Prediction Software |
prodigal |
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GITHUB
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ghcr.io/autamus/proj |
PROJ is a generic coordinate transformation software, that transforms coordinates from one coordinate reference system (CRS) to another. |
proj, projinfo, projsync |
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GITHUB
|
ghcr.io/autamus/protobuf |
Protocol Buffers is a method of serializing structured data. It is useful in developing programs to communicate with each other over a network or for storing data. |
protoc, protoc-3.15.8.0 |
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GITHUB
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ghcr.io/autamus/pumi |
SCOREC RPI's Parallel Unstructured Mesh Infrastructure (PUMI). |
print_pumipic_partition |
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GITHUB
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ghcr.io/autamus/py-libensemble |
Library for managing ensemble-like collections of computations. |
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GITHUB
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ghcr.io/autamus/py-petsc4py |
This package provides Python bindings for the PETSc package. |
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GITHUB
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ghcr.io/autamus/python |
An interpreted, high-level and general-purpose programming language. |
pydoc3, pydoc3.8, python, python-config, python3, python3-config, python3.8, python3.8-config, python3.8-gdb.py |
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GITHUB
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ghcr.io/autamus/qhull |
Snappy (previously known as Zippy) is a fast data compression and decompression library written in C++ by Google based on ideas from LZ77 and open-sourced in 2011. |
qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox |
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GITHUB
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ghcr.io/autamus/r-seqlogo |
Sequence logos for DNA sequence alignments |
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GITHUB
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ghcr.io/autamus/r |
R is a language and environment for statistical computing and graphics. |
R |
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GITHUB
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ghcr.io/autamus/raxml |
RAxML (Randomized Axelerated Maximum Likelihood) is a popular program for phylogenetic analysis of large datasets under maximum likelihood. |
raxmlHPC, raxmlHPC-AVX, raxmlHPC-MPI, raxmlHPC-MPI-AVX, raxmlHPC-MPI-SSE3, raxmlHPC-SSE3 |
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GITHUB
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ghcr.io/autamus/rclone |
Rclone is a command line program to manage files on cloud storage. |
rclone |
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GITHUB
|
ghcr.io/autamus/rempi |
ReMPI is a record-and-replay tool for MPI applications. |
rempi, rempi_record, rempi_replay, reset |
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GITHUB
|
ghcr.io/autamus/rsync |
An open source utility that provides fast incremental file transfer. https://rsync.samba.org/ |
rsync, rsync-ssl |
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GITHUB
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ghcr.io/autamus/ruby |
An interpreted, high-level, general-purpose programming language. |
bundle, bundler, erb, gem, irb, racc, rake, rbs, rdoc, ri, ruby |
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GITHUB
|
ghcr.io/autamus/rust |
Rust is a multi-paradigm programming language designed for performance and safety, especially safe concurrency. |
cargo, cargo-clippy, cargo-fmt, clippy-driver, rust, rust-gdb, rust-gdbgui, rust-lldb, rustc, rustdoc, rustfmt |
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GITHUB
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ghcr.io/autamus/salmon |
Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data. |
salmon |
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GITHUB
|
ghcr.io/autamus/samtools |
Samtools is a suite of programs for interacting with high-throughput sequencing data. |
blast2sam.pl, bowtie2sam.pl, export2sam.pl, fasta-sanitize.pl, interpolate_sam.pl, novo2sam.pl, psl2sam.pl, sam2vcf.pl, samtools, samtools.pl, seq_cache_populate.pl, soap2sam.pl, wgsim_eval.pl, zoom2sam.pl |
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GITHUB
|
ghcr.io/autamus/scons |
SCons is an Open Source software construction tool. |
scons, scons-3.1.2, scons-3.1.2.bat, scons-configure-cache, scons-configure-cache-3.1.2, scons-time, scons-time-3.1.2, scons.bat, sconsign, sconsign-3.1.2 |
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GITHUB
|
ghcr.io/autamus/scr |
SCR caches checkpoint data in storage on the compute nodes of a Linux cluster to provide a fast, scalable checkpoint/restart capability for MPI codes. |
scancel, scontrol, scp, scr_check_node, scr_ckpt_interval.py, scr_copy, scr_crc32, scr_env, scr_flush_file, scr_get_jobstep_id, scr_glob_hosts, scr_halt, scr_halt_cntl, scr_index, scr_inspect, scr_kill_jobstep, scr_list_dir, scr_list_down_nodes, scr_log_event, scr_log_transfer, scr_nodes_file, scr_postrun, scr_prefix, scr_prerun, scr_print, scr_rebuild_partner, scr_rebuild_rs, scr_rebuild_xor, scr_retries_halt, scr_run, scr_scavenge, scr_srun, scr_test_datemanip, scr_test_runtime, scr_watchdog, scrlog.py, scrontab |
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GITHUB
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ghcr.io/autamus/siesta |
SIESTA performs electronic structure calculations and ab initio molecular dynamics simulations of molecules and solids. |
siesta |
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GITHUB
|
ghcr.io/autamus/slate |
The Software for Linear Algebra Targeting Exascale (SLATE) project is to provide fundamental dense linear algebra capabilities to the US Department of Energy and to the high-performance computing (HPC) community at large. |
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GITHUB
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ghcr.io/autamus/slepc |
Scalable Library for Eigenvalue Problem Computations. |
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GITHUB
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ghcr.io/autamus/snappy |
Snappy (previously known as Zippy) is a fast data compression and decompression library written in C++ by Google based on ideas from LZ77 and open-sourced in 2011. |
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GITHUB
|
ghcr.io/autamus/spades |
St. Petersburg genome assembler – an assembly toolkit containing various assembly pipelines. |
spades-bwa, spades-convert-bin-to-fasta, spades-core, spades-corrector-core, spades-gbuilder, spades-gmapper, spades-gsimplifier, spades-hammer, spades-ionhammer, spades-kmer-estimating, spades-kmercount, spades-read-filter, spades-truseq-scfcorrection, spades.py, spaligner |
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GITHUB
|
ghcr.io/autamus/sparsehash |
several hash-map implementations, similar in API to SGI's hash_map class, but with different performance characteristics. |
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GITHUB
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ghcr.io/autamus/sqlite |
SQLite is a relational database management system contained in a C library. |
sqlite3 |
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GITHUB
|
ghcr.io/autamus/stc |
The Swift-Turbine Compiler (STC) |
stc, swift-t |
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GITHUB
|
ghcr.io/autamus/stringtie |
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. |
stringtie |
|
GITHUB
|
ghcr.io/autamus/superlu |
SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines. |
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GITHUB
|
ghcr.io/autamus/sz |
Error-bounded Lossy Compressor for HPC Data |
sz |
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GITHUB
|
ghcr.io/autamus/tasmanian |
The Toolkit for Adaptive Stochastic Modeling and Non-Intrusive ApproximatioN is a robust library for high dimensional integration and interpolation as well as parameter calibration. https://tasmanian.ornl.gov |
tasgrid |
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GITHUB
|
ghcr.io/autamus/tau |
A portable profiling and tracing toolkit for performance analysis of parallel programs written in Fortran, C, C++, UPC, Java, Python. |
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GITHUB
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ghcr.io/autamus/tcsh |
|
tcsh |
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GITHUB
|
ghcr.io/autamus/trilinos |
The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented software framework for the solution of large-scale, complex multi-physics engineering and scientific problems. A unique design feature of Trilinos is its focus on packages. |
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GITHUB
|
ghcr.io/autamus/turbine |
Turbine is the Swift/T runtime |
turbine, turbine-pilot, turbine-read-doubles, turbine-write-doubles |
|
GITHUB
|
ghcr.io/autamus/udunits |
The UDUNITS package supports units of physical quantities. Its C library provides for arithmetic manipulation of units and for conversion of numeric values between compatible units. |
udunits2 |
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GITHUB
|
ghcr.io/autamus/umap |
Umap is a library that provides an mmap()-like interface to a simple, user-space page fault handler based on the userfaultfd Linux feature (starting with 4.3 linux kernel). |
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GITHUB
|
ghcr.io/autamus/unifyfs |
User level file system that enables applications to use node-local storage as burst buffers for shared files. |
unifyfs, unifyfs-config, unifyfsd |
|
GITHUB
|
ghcr.io/autamus/unixodbc |
unixODBC-Test containing Qt based ODBC test tool, and autotest framework. |
odbc_config, odbcinst |
|
GITHUB
|
ghcr.io/autamus/upcxx |
UPC++ is a C++ library that supports Partitioned Global Address Space (PGAS) programming, and is designed to interoperate smoothly and efficiently with MPI, OpenMP, CUDA and AMTs. |
upcxx, upcxx-meta, upcxx-run, upcxx.sh |
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GITHUB
|
ghcr.io/autamus/valgrind |
A suite of tools for debugging and profiling. |
valgrind, valgrind-di-server, valgrind-listener |
|
GITHUB
|
ghcr.io/autamus/veloc |
Very-Low Overhead Checkpointing System. VELOC is a multi-level checkpoint-restart runtime for HPC supercomputing infrastructures |
veloc-backend, veloc_check_node, veloc_env, veloc_glob_hosts, veloc_jsrun, veloc_list_down_nodes |
|
GITHUB
|
ghcr.io/autamus/wget |
GNU Wget is a free software package for retrieving files using HTTP, HTTPS, FTP and FTPS, the most widely used Internet protocols. |
wget |
|
GITHUB
|
ghcr.io/autamus/xnnpack |
High-efficiency floating-point neural network inference operators for mobile, server, and Web |
|
|
GITHUB
|
ghcr.io/autamus/xrootd |
XRootD software framework is a fully generic suite for fast, low latency and scalable data access, which can serve natively any kind of data, organized as a hierarchical filesystem-like namespace, based on the concept of directory. |
xrdacctest, xrdadler32, xrdcopy, xrdcp, xrdfs, xrdgsiproxy, xrdgsitest, xrdmapc, xrdpfc_print, xrdpinls, xrdpwdadmin, xrdsssadmin, xrootd, xrootd-config |
|
GITHUB
|
ghcr.io/autamus/xz |
XZ Utils is free general-purpose data compression software with a high compression ratio. |
xz, xzcat, xzcmp, xzdec, xzdiff, xzegrep, xzfgrep, xzgrep, xzless, xzmore |
|
GITHUB
|
ghcr.io/autamus/zfp |
zfp is a compressed number format for multidimensional floating-point and integer arrays. |
|
|
GITHUB
|
ghcr.io/autamus/zlib |
zlib is a software library used for data compression. zlib was written by Jean-loup Gailly and Mark Adler and is an abstraction of the DEFLATE compression algorithm used in their gzip file compression program. |
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GITHUB
|
ghcr.io/singularityhub/github-ci |
An example SIF on GitHub packages to pull with oras |
|
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GITHUB
|
golang |
Go (a.k.a., Golang) is a programming language first developed at Google. |
go, gofmt |
|
GITHUB
|
gradle |
Gradle is a build tool with a focus on build automation and support for multi-language development. |
gradle |
|
GITHUB
|
hashicorp/consul |
Automatic build of consul based on the current release. |
consul, docker-entrypoint.sh |
|
GITHUB
|
hashicorp/vault |
Vault is a tool for securely accessing secrets via a unified interface and tight access control. |
vault |
|
GITHUB
|
julia |
An interpreted, high-level, high-performance dynamic programming language for technical computing. |
julia |
|
GITHUB
|
jupyter/datascience-notebook |
Jupyter Datascience Notebook from https://github.com/jupyter/docker-stacks |
run-notebook |
|
GITHUB
|
jupyter/minimal-notebook |
Jupyter Minimal Notebook from https://github.com/jupyter/docker-stacks |
run-notebook |
|
GITHUB
|
jupyter/pyspark-notebook |
Jupyter Pyspark Notebook from https://github.com/jupyter/docker-stacks |
run-notebook |
|
GITHUB
|
jupyter/r-notebook |
Jupyter R Notebook from https://github.com/jupyter/docker-stacks |
run-notebook |
|
GITHUB
|
jupyter/scipy-notebook |
Jupyter Notebook Scientific Python Stack from https://github.com/jupyter/docker-stacks |
run-notebook |
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GITHUB
|
jupyter/tensorflow-notebook |
Jupyter Tensorflow Notebook from https://github.com/jupyter/docker-stacks |
run-notebook |
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GITHUB
|
kibana |
Kibana gives shape to any kind of data — structured and unstructured — indexed in Elasticsearch. |
kibana, kibana-encryption-keys, kibana-keystore, kibana-plugin |
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GITHUB
|
mariadb |
MariaDB Server is one of the most popular database servers in the world. It’s made by the original developers of MySQL and guaranteed to stay open source. Notable users include Wikipedia, DBS Bank and ServiceNow. |
mariabackup, mariadb, mariadb-access, mariadb-admin, mariadb-analyze, mariadb-backup, mariadb-binlog, mariadb-check, mariadb-conv, mariadb-convert-table-format, mariadb-dump, mariadb-dumpslow, mariadb-find-rows, mariadb-fix-extensions, mariadb-hotcopy, mariadb-import, mariadb-install-db, mariadb-optimize, mariadb-plugin, mariadb-repair, mariadb-report, mariadb-secure-installation, mariadb-service-convert, mariadb-setpermission, mariadb-show, mariadb-slap, mariadb-tzinfo-to-sql, mariadb-upgrade, mariadb-waitpid, mariadbcheck, mariadbd-multi, mariadbd-safe, mariadbd-safe-helper |
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GITHUB
|
mongo |
MongoDB is a free and open-source cross-platform document-oriented database program. Classified as a NoSQL database program, MongoDB uses JSON-like documents with schemata. |
mongo, mongod, mongodump, mongoexport, mongofiles, mongoimport, mongos, mongostat, mongostore, mongotop |
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GITHUB
|
mysql |
MySQL is the world's most popular open source database. |
mysql, mysql_config_editor, mysql_secure_installation, mysql_ssl_rsa_setup, mysql_tzinfo_to_sql, mysql_upgrade, mysqladmin, mysqlbinlog, mysqlcheck, mysqld_multi, mysqld_safe, mysqldump, mysqldumpslow, mysqlimport, mysqlpump, mysqlshow, mysqlslap |
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GITHUB
|
ncbi/blast |
The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. |
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GITHUB
|
nginx |
Nginx (pronounced 'engine-x') is an open source reverse proxy server for HTTP, HTTPS, SMTP, POP3, and IMAP protocols, as well as a load balancer, HTTP cache, and a web server (origin server). |
nginx, nginx-debug |
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GITHUB
|
node |
Node.js is a software platform for scalable server-side and networking applications. |
node, nodejs, npm, npx, yarn, yarnpkg |
|
GITHUB
|
nvcr.io/hpc/autodock |
The AutoDock-GPU Suite is a growing collection of methods for computational docking and virtual screening, for use in structure-based drug discovery and exploration of the basic mechanisms of biomolecular structure and function. More info on AutoDock-GPU be located at https://ccsb.scripps.edu/autodock/ and https://github.com/ccsb-scripps/AutoDock-GPU#usage. |
autodock |
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GITHUB
|
nvcr.io/hpc/gromacs |
GROMACS is a popular molecular dynamics application used to simulate proteins and lipids. |
python |
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GITHUB
|
nvcr.io/hpc/lammps |
Large-scale Atomic/Molecular Massively Parallel Simulator (LAMMPS) is a software application designed for molecular dynamics simulations. It has the potentials for solid-state materials (metals, semiconductor), soft matter (biomolecules, polymers), and coarse-grained or mesoscopic systems. The main use-case is atom scale particle modeling or, more generically, as a parallel particle simulator at the atomic, meson, or continuum scale. LAMMPS runs on single processors or in parallel using message-passing techniques and a spatial-decomposition of the simulation domain. Read more on the LAMMPS website https://lammps.sandia.gov/. |
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GITHUB
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nvcr.io/hpc/namd |
NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD uses the popular molecular graphics program VMD for simulation setup and trajectory analysis, but is also file-comp atible with AMBER, CHARMM, and X-PLOR. |
charmrun, flipbinpdb, flipdcd, namd3, psfgen, sortreplicas, vmd |
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GITHUB
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nvcr.io/hpc/preflightcheck |
The Pre-Flight Check container verifies that the container runtime is setup correctly for GPUs and InfiniBand. |
|
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GITHUB
|
nvcr.io/hpc/quantum_espresso |
Quantum ESPRESSO is an integrated suite of Open-Source computer codes for electronic-structure calculations and materials modeling at the nanoscale based on density-functional theory, plane waves, and pseudopotentials. |
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GITHUB
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nvcr.io/nvidia/caffe |
NVIDIA Caffe, also known as NVCaffe, is an NVIDIA-maintained fork of Berkeley Vision and Learning Center (BVLC) Caffe tuned for NVIDIA GPUs, particularly in multi-GPU configurations. |
python |
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GITHUB
|
nvcr.io/nvidia/digits |
The NVIDIA Deep Learning GPU Training System (DIGITS) puts the power of deep learning into the hands of engineers and data scientists. |
python |
|
GITHUB
|
nvcr.io/nvidia/hpc-benchmarks |
The NVIDIA HPC-Benchmarks collection provides three NVIDIA accelerated HPC benchmarks: HPL-NVIDIA, HPL-AI-NVIDIA, and HPCG-NVIDIA. |
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GITHUB
|
nvcr.io/nvidia-hpcvis/paraview |
ParaView is one of the most popular visualization software for analyzing HPC datasets. |
pvdataserver, pvrenderserver, pvbatch, pypython, pvserver |
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GITHUB
|
nvcr.io/nvidia/pytorch |
PyTorch is a GPU accelerated tensor computational framework with a Python front end. Functionality can be easily extended with common Python libraries such as NumPy, SciPy, and Cython. Automatic differentiation is done with a tape-based system at both a functional and neural network layer level. |
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GITHUB
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nvcr.io/nvidia/rapidsai/rapidsai |
The RAPIDS suite of software libraries gives you the freedom to execute end-to-end data science and analytics pipelines entirely on GPUs. |
python |
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GITHUB
|
nvcr.io/nvidia/tensorflow |
TensorFlow is an open-source software library for high-performance numerical computation. Its flexible architecture allows easy deployment of computation across a variety of platforms (CPUs, GPUs, TPUs), and from desktops to clusters of servers to mobile and edge devices. |
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GITHUB
|
openjdk |
OpenJDK is an open-source implementation of the Java Platform, Standard Edition. |
jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jdeprscan, jdeps, jfr, jhsdb, jimage, jinfo, jlink, jmap, jmod, jobs, join, jpackage, jps, jrunscript, jshell, jstack, jstat, jstatd |
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GITHUB
|
php |
While designed for web development, the PHP scripting language also provides general-purpose use. |
php, php-cgi, php-config, phpdbg, phpize |
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GITHUB
|
poldracklab/mriqc |
Automatic prediction of quality and visual reporting of MRI scans. |
mriqc |
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GITHUB
|
postgres |
PostgreSQL, often simply 'Postgres', is an object-relational database management system (ORDBMS) with an emphasis on extensibility and standards-compliance. |
clusterdb, createdb, createuser, dropdb, dropuser, initdb, oid2name, pg_archivecleanup, pg_basebackup, pg_checksums, pg_config, pg_controldata, pg_ctl, pg_dump, pg_dumpall, pg_isready, pg_receivewal, pg_recvlogical, pg_resetwal, pg_restore, pg_rewind, pg_standby, pg_test_fsync, pg_test_timing, pg_upgrade, pg_verifybackup, pg_waldump, pgbench, postgres, postmaster, psql, reindexdb, vacuumdb, vacuumlo |
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GITHUB
|
python |
An interpreted, high-level and general-purpose programming language. |
python |
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GITHUB
|
quay.io/biocontainers/10x_bamtofastq |
singularity registry hpc automated addition for 10x_bamtofastq |
bamtofastq |
|
GITHUB
|
quay.io/biocontainers/2pg_cartesian |
shpc-registry automated BioContainers addition for 2pg_cartesian |
gmx, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, protpred-Gromacs-Dominance, protpred-Gromacs-Front, protpred-Gromacs-MC_Metropolis, protpred-Gromacs-Mono, protpred-Gromacs-NSGA2, protpred-Gromacs-Random_Algorithm, protpred-Gromacs-Sort_Method_Files_by_Front_Dominance, protpred-Gromacs-Sort_Method_by_Front_Dominance, protpred-Gromacs-Test_compute_Diehdral, protpred-Gromacs-Test_compute_objetivies, protpred-Gromacs-Test_crossover, protpred-Gromacs-Test_dm_refinement, protpred-Gromacs-Test_load_population, protpred-Gromacs-Test_random_number, protpred-Gromacs-Test_rotation, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/3seq |
singularity registry hpc automated addition for 3seq |
3seq |
|
GITHUB
|
quay.io/biocontainers/a3partitioner |
singularity registry hpc automated addition for a3partitioner |
A3Partitioner, idle3.13, pydoc3.13, python3.13, python3.13-config, numpy-config |
|
GITHUB
|
quay.io/biocontainers/aacon |
singularity registry hpc automated addition for aacon |
aacon, jwebserver, pcre2posix_test, jpackage, cups-config, ippeveprinter, ipptool, hb-info, tjbench, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole |
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GITHUB
|
quay.io/biocontainers/abacas |
shpc-registry automated BioContainers addition for abacas |
abacas.1.3.1.pl, abacas.pl, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot |
|
GITHUB
|
quay.io/biocontainers/abacat |
shpc-registry automated BioContainers addition for abacat |
phenotyping.py, prodigal.py, prokka.py, fastANI, annotate.py, prodigal, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/abawaca |
shpc-registry automated BioContainers addition for abawaca |
abawaca |
|
GITHUB
|
quay.io/biocontainers/abeona |
shpc-registry automated BioContainers addition for abeona |
abeona, cortexpy, kallisto, mccortex, mccortex127, mccortex31, mccortex63, mccortex95, nextflow, nextflow.bak, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
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GITHUB
|
quay.io/biocontainers/abismal |
shpc-registry automated BioContainers addition for abismal |
abismal, abismalidx, simreads |
|
GITHUB
|
quay.io/biocontainers/abnumber |
shpc-registry automated BioContainers addition for abnumber |
ANARCI, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat |
|
GITHUB
|
quay.io/biocontainers/abpoa |
shpc-registry automated BioContainers addition for abpoa |
abpoa |
|
GITHUB
|
quay.io/biocontainers/abra2 |
shpc-registry automated BioContainers addition for abra2 |
abra2, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
|
GITHUB
|
quay.io/biocontainers/abricate |
shpc-registry automated BioContainers addition for abricate |
abricate, abricate-get_db, any2fasta, funzip, unzipsfx, zipgrep, zipinfo, unzip, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee |
|
GITHUB
|
quay.io/biocontainers/abritamr |
shpc-registry automated BioContainers addition for abritamr |
abriTAMR, abritamr, amr_report, amrfinder, amrfinder_update, dna_mutation, fasta2parts, fasta_check, fasta_extract, gff_check, vba_extract.py, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml |
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GITHUB
|
quay.io/biocontainers/abromics_galaxy_json_extractor |
singularity registry hpc automated addition for abromics_galaxy_json_extractor |
abromics_extract, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/abruijn |
shpc-registry automated BioContainers addition for abruijn |
abruijn, abruijn-assemble, abruijn-polish, abruijn-repeat, easy_install-2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5 |
|
GITHUB
|
quay.io/biocontainers/absense |
singularity registry hpc automated addition for absense |
Plot_abSENSE.py, Run_abSENSE.py, get_gprof, get_objgraph, undill, f2py3.8, fonttools, pyftmerge, pyftsubset, ttx, brotli, tjbench, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, opj_compress, opj_decompress, opj_dump |
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GITHUB
|
quay.io/biocontainers/abundancebin |
shpc-registry automated BioContainers addition for abundancebin |
abundancebin |
|
GITHUB
|
quay.io/biocontainers/abyss-k128 |
shpc-registry automated BioContainers addition for abyss-k128 |
|
|
GITHUB
|
quay.io/biocontainers/abyss |
shpc-registry automated BioContainers addition for abyss |
ABYSS, ABYSS-P, abyss-align, abyss-bloom, abyss-bloom-dbg, abyss-bloom-dist.mk, abyss-bloom-dist.mk.Makefile, abyss-bowtie, abyss-bowtie2, abyss-bwa, abyss-bwamem, abyss-bwasw, abyss-db-txt, abyss-dida, abyss-fac, abyss-fatoagp, abyss-filtergraph, abyss-fixmate, abyss-fixmate-ssq, abyss-gapfill, abyss-gc, abyss-index, abyss-junction, abyss-kaligner, abyss-layout, abyss-longseqdist, abyss-map, abyss-map-ssq, abyss-mergepairs, abyss-overlap, abyss-paired-dbg, abyss-paired-dbg-mpi, abyss-pe, abyss-pe.Makefile, abyss-rresolver-short, abyss-samtoafg, abyss-scaffold, abyss-sealer, abyss-stack-size, abyss-tabtomd, abyss-todot, abyss-tofastq, irqtop, lsirq, nsenter, prlimit, scriptlive, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject |
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GITHUB
|
quay.io/biocontainers/ac-diamond |
shpc-registry automated BioContainers addition for ac-diamond |
ac-diamond |
|
GITHUB
|
quay.io/biocontainers/ac |
shpc-registry automated BioContainers addition for ac |
AC |
|
GITHUB
|
quay.io/biocontainers/acdc |
singularity registry hpc automated addition for acdc |
acdc, acdc-filter-fasta-by-name.awk, acdc-make-fastas, kraken, kraken-build, kraken-filter, kraken-mpa-report, kraken-report, kraken-translate, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, jellyfish, tar, idn2, wget |
|
GITHUB
|
quay.io/biocontainers/aci |
singularity registry hpc automated addition for aci |
aci, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/acms |
singularity registry hpc automated addition for acms |
acmbuild, acmbuild_checkCompatibility, acmbuild_train, acmsearch, addRNAoptions.pl, gapc, ghc, ghc-8.10.7, ghc-pkg, ghc-pkg-8.10.7, ghci, ghci-8.10.7, hp2ps, hpc, hsc2hs, runghc, runghc-8.10.7, runhaskell |
|
GITHUB
|
quay.io/biocontainers/actc |
singularity registry hpc automated addition for actc |
actc |
|
GITHUB
|
quay.io/biocontainers/adam |
shpc-registry automated BioContainers addition for adam |
adam-shell, adam-submit, beeline, beeline.cmd, csv-import, docker-image-tool.sh, elasticurl, elasticurl_cpp, elastipubsub, find-spark-home, find-spark-home.cmd, find_spark_home.py, load-spark-env.cmd, load-spark-env.sh, orc-memory, orc-scan, pyspark, pyspark.cmd, pyspark2.cmd, run-example, run-example.cmd, spark-class, spark-class.cmd, spark-class2.cmd, spark-shell, spark-shell.cmd, spark-shell2.cmd, spark-sql, spark-sql.cmd, spark-sql2.cmd, spark-submit, spark-submit.cmd, spark-submit2.cmd, sparkR, sparkR.cmd, sparkR2.cmd, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin |
|
GITHUB
|
quay.io/biocontainers/adapt |
shpc-registry automated BioContainers addition for adapt |
analyze_coverage.py, design.py, design_naively.py, import_pb_to_tensorboard, pick_test_targets.py, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2 |
|
GITHUB
|
quay.io/biocontainers/adapterremoval |
shpc-registry automated BioContainers addition for adapterremoval |
AdapterRemoval, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/adapterremovalfixprefix |
shpc-registry automated BioContainers addition for adapterremovalfixprefix |
AdapterRemovalFixPrefix, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/adas |
singularity registry hpc automated addition for adas |
adas-build, adas-chain, adas-insert, adas-knn, adas-search, usearch |
|
GITHUB
|
quay.io/biocontainers/addrg |
shpc-registry automated BioContainers addition for addrg |
addrg, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/admixtools |
shpc-registry automated BioContainers addition for admixtools |
convertf, dof4, dof4a, dowtjack, expfit.sh, gcount, getresult, grabpars, jackdiff, kimf, mergeit, mkpretty, numlines, qp3Pop, qp4diff, qpAdm, qpBound, qpDpart, qpDstat, qpF4ratio, qpGraph, qpWave, qpdslow, qpff3base, qpfmv, qpfstats, qpmix, qpreroot, rexpfit.r, rolloff, rolloffp, simpjack2, wtjack.pl, xtractcol, xtractcolv |
|
GITHUB
|
quay.io/biocontainers/admixture |
shpc-registry automated BioContainers addition for admixture |
admixture |
|
GITHUB
|
quay.io/biocontainers/adpred |
shpc-registry automated BioContainers addition for adpred |
run-adpred, theano-cache, theano-nose, freeze_graph, mako-render, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard |
|
GITHUB
|
quay.io/biocontainers/advntr |
shpc-registry automated BioContainers addition for advntr |
adVNTR-Filtering, advntr, unit2, theano-cache, theano-nose, freeze_graph, mako-render, tf_upgrade_v2, muscle, tflite_convert, saved_model_cli, toco |
|
GITHUB
|
quay.io/biocontainers/aegean |
shpc-registry automated BioContainers addition for aegean |
canon-gff3, gaeval, genometools-config, gt, locuspocus, parseval, pmrna, tidygff3, xtractore, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, 2to3-3.9, idle3.9, pydoc3.9 |
|
GITHUB
|
quay.io/biocontainers/aenum |
shpc-registry automated BioContainers addition for aenum |
2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5, wish8.5 |
|
GITHUB
|
quay.io/biocontainers/aeon |
singularity registry hpc automated addition for aeon |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/afpdb |
singularity registry hpc automated addition for afpdb |
numpy-config, ipython3, ipython, tabulate, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, pygmentize, normalizer |
|
GITHUB
|
quay.io/biocontainers/afplot |
shpc-registry automated BioContainers addition for afplot |
|
|
GITHUB
|
quay.io/biocontainers/afragmenter |
singularity registry hpc automated addition for afragmenter |
afragmenter, rich-click, igraph, idle3.13, pydoc3.13, python3.13, python3.13-config, markdown-it, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, glpsol, pygmentize, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, tjbench, opj_compress, opj_decompress |
|
GITHUB
|
quay.io/biocontainers/afterqc |
shpc-registry automated BioContainers addition for afterqc |
after.py, barcodeprocesser.py, bubbledetector.py, bubbleprocesser.py, circledetector.py, debubble.py, fastq.py, preprocesser.py, qcreporter.py, qualitycontrol.py, util.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/agat |
shpc-registry automated BioContainers addition for agat |
agat_convert_bed2gff.pl, agat_convert_embl2gff.pl, agat_convert_genscan2gff.pl, agat_convert_mfannot2gff.pl, agat_convert_minimap2_bam2gff.pl, agat_convert_sp_gff2bed.pl, agat_convert_sp_gff2gtf.pl, agat_convert_sp_gff2tsv.pl, agat_convert_sp_gff2zff.pl, agat_convert_sp_gxf2gxf.pl, agat_sp_Prokka_inferNameFromAttributes.pl, agat_sp_add_attribute_shortest_exon_size.pl, agat_sp_add_attribute_shortest_intron_size.pl, agat_sp_add_introns.pl, agat_sp_add_start_and_stop.pl, agat_sp_alignment_output_style.pl, agat_sp_clipN_seqExtremities_and_fixCoordinates.pl, agat_sp_compare_two_BUSCOs.pl, agat_sp_compare_two_annotations.pl, agat_sp_complement_annotations.pl, agat_sp_ensembl_output_style.pl, agat_sp_extract_attributes.pl, agat_sp_extract_sequences.pl, agat_sp_filter_by_ORF_size.pl, agat_sp_filter_by_locus_distance.pl, agat_sp_filter_by_mrnaBlastValue.pl, agat_sp_filter_feature_by_attribute_presence.pl, agat_sp_filter_feature_by_attribute_value.pl, agat_sp_filter_feature_from_keep_list.pl, agat_sp_filter_feature_from_kill_list.pl, agat_sp_filter_gene_by_intron_numbers.pl, agat_sp_filter_gene_by_length.pl, agat_sp_filter_incomplete_gene_coding_models.pl, agat_sp_filter_record_by_coordinates.pl, agat_sp_fix_cds_phases.pl, agat_sp_fix_features_locations_duplicated.pl, agat_sp_fix_fusion.pl, agat_sp_fix_longest_ORF.pl, agat_sp_fix_overlaping_genes.pl, agat_sp_fix_small_exon_from_extremities.pl, agat_sp_flag_premature_stop_codons.pl, agat_sp_flag_short_introns.pl, agat_sp_functional_statistics.pl, agat_sp_keep_longest_isoform.pl, agat_sp_kraken_assess_liftover.pl, agat_sp_list_short_introns.pl, agat_sp_load_function_from_protein_align.pl, agat_sp_manage_IDs.pl, agat_sp_manage_UTRs.pl, agat_sp_manage_attributes.pl, agat_sp_manage_functional_annotation.pl, agat_sp_manage_introns.pl, agat_sp_merge_annotations.pl, agat_sp_prokka_fix_fragmented_gene_annotations.pl, agat_sp_sensitivity_specificity.pl, agat_sp_separate_by_record_type.pl, agat_sp_statistics.pl, agat_sp_webApollo_compliant.pl, agat_sq_add_attributes_from_tsv.pl, agat_sq_add_hash_tag.pl, agat_sq_add_locus_tag.pl, agat_sq_count_attributes.pl, agat_sq_filter_feature_from_fasta.pl, agat_sq_list_attributes.pl, agat_sq_manage_IDs.pl, agat_sq_manage_attributes.pl, agat_sq_mask.pl, agat_sq_remove_redundant_entries.pl, agat_sq_repeats_analyzer.pl, agat_sq_reverse_complement.pl, agat_sq_rfam_analyzer.pl, agat_sq_split.pl, agat_sq_stat_basic.pl, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc |
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GITHUB
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quay.io/biocontainers/agc |
singularity registry hpc automated addition for agc |
agc |
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GITHUB
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quay.io/biocontainers/age-metasv |
shpc-registry automated BioContainers addition for age-metasv |
age_align |
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GITHUB
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quay.io/biocontainers/agfusion |
shpc-registry automated BioContainers addition for agfusion |
agfusion, epylint, isort, nose2, nose2-2.7, nose2-3.6, pyensembl, pylint, pyreverse, symilar, coverage, futurize, pasteurize, f2py3.8, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/agg |
shpc-registry automated BioContainers addition for agg |
agg |
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GITHUB
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quay.io/biocontainers/agouti |
singularity registry hpc automated addition for agouti |
agouti, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/agrvate |
shpc-registry automated BioContainers addition for agrvate |
agrvate, file, snippy, snippy-clean_full_aln, snippy-core, snippy-multi, snippy-vcf_extract_subs, snippy-vcf_report, snippy-vcf_to_tab, vcfnormalizesvs, vcfnull2ref, vcfunphase, snp-sites, filter-table, spdi2prod, vt, seqkit, plotBfst.R, plotHapLrt.R, plotHaplotypes.R, plotPfst.R, plotSmoothed.R |
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GITHUB
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quay.io/biocontainers/airr |
shpc-registry automated BioContainers addition for airr |
airr-tools, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/akt |
shpc-registry automated BioContainers addition for akt |
akt |
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GITHUB
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quay.io/biocontainers/albatradis |
shpc-registry automated BioContainers addition for albatradis |
add_tradis_tags, albatradis, albatradis-annotation, albatradis-artemis_project, albatradis-gene_reports, albatradis-presence_absence, albatradis-scatterplot, bacteria_tradis, basqcol, check_tradis_tags, combine_tradis_plots, fetchseq, filter_tradis_tags, mixreads, readstats, remove_tradis_tags, simqual, simread, smalt, splitmates, splitreads, tradis_comparison.R, tradis_essentiality.R, tradis_gene_insert_sites, tradis_merge_plots, tradis_plot, trunkreads, fastaq, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches |
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GITHUB
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quay.io/biocontainers/alcor |
singularity registry hpc automated addition for alcor |
AlcoR |
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GITHUB
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quay.io/biocontainers/alder |
shpc-registry automated BioContainers addition for alder |
alder, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
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GITHUB
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quay.io/biocontainers/alen |
singularity registry hpc automated addition for alen |
alen |
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GITHUB
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quay.io/biocontainers/aletsch |
shpc-registry automated BioContainers addition for aletsch |
aletsch, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/alevin-fry |
shpc-registry automated BioContainers addition for alevin-fry |
alevin-fry |
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GITHUB
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quay.io/biocontainers/alfa |
shpc-registry automated BioContainers addition for alfa |
alfa, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed |
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GITHUB
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quay.io/biocontainers/alfred |
shpc-registry automated BioContainers addition for alfred |
alfred, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/aliceasm |
singularity registry hpc automated addition for aliceasm |
aliceasm, bcalm, gfatools, graphunzip, paf2gfa, reduce, h5cc |
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GITHUB
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quay.io/biocontainers/alientrimmer |
singularity registry hpc automated addition for alientrimmer |
alientrimmer, jwebserver, jpackage, cups-config, ippeveprinter, ipptool, hb-info, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo |
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GITHUB
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quay.io/biocontainers/align_it |
shpc-registry automated BioContainers addition for align_it |
align-it, babel, obchiral, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop |
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GITHUB
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quay.io/biocontainers/aligncov |
singularity registry hpc automated addition for aligncov |
aligncov, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl |
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GITHUB
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quay.io/biocontainers/alignlib-lite |
shpc-registry automated BioContainers addition for alignlib-lite |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/alignment |
shpc-registry automated BioContainers addition for alignment |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/alignoth |
singularity registry hpc automated addition for alignoth |
alignoth |
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GITHUB
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quay.io/biocontainers/alignstats |
shpc-registry automated BioContainers addition for alignstats |
alignstats, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/aliview |
singularity registry hpc automated addition for aliview |
aliview, aliview-test, jwebserver, jpackage, cups-config, ippeveprinter, ipptool, hb-info, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo |
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GITHUB
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quay.io/biocontainers/allhic |
singularity registry hpc automated addition for allhic |
allhic |
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GITHUB
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quay.io/biocontainers/allo |
singularity registry hpc automated addition for allo |
allo, flatc, protoc-24.4.0, h5tools_test_utils, import_pb_to_tensorboard, h5fuse.sh, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, h5delete, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, markdown_py, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen |
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GITHUB
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quay.io/biocontainers/altair-mf |
singularity registry hpc automated addition for altair-mf |
AltaiR |
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GITHUB
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quay.io/biocontainers/altamisa |
shpc-registry automated BioContainers addition for altamisa |
isatab2dot, isatab2isatab, isatab_validate, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/alv |
shpc-registry automated BioContainers addition for alv |
alv, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/amap |
shpc-registry automated BioContainers addition for amap |
amap, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides |
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GITHUB
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quay.io/biocontainers/amas |
shpc-registry automated BioContainers addition for amas |
AMAS.py, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/amdirt |
singularity registry hpc automated addition for amdirt |
AMDirT, streamlit, streamlit.cmd, watchmedo, markdown-it, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, tjbench, gflags_completions.sh, jupyter-kernel, jupyter-kernelspec, jupyter-run, f2py3.11, curve_keygen, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, ipython3 |
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GITHUB
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quay.io/biocontainers/amiga |
singularity registry hpc automated addition for amiga |
amiga, cygdb, cython, cythonize, tabulate, fonttools, pyftmerge, pyftsubset, ttx, brotli, tjbench, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/aminoextract |
singularity registry hpc automated addition for aminoextract |
AminoExtract, aminoextract, markdown-it, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, pygmentize, python3.1 |
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GITHUB
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quay.io/biocontainers/amos |
shpc-registry automated BioContainers addition for amos |
AMOScmp, AMOScmp-shortReads, AMOScmp-shortReads-alignmentTrimmed, Bundler, Chainer, FRCurve, FilterEdgesByCluster, Joiner, Linearize, MarkRepeats, Minimo, OrientContigs, OutputMotifs, OutputResults, OutputScaffolds, RankMotifs, ace2contig, agp2amos, amos2ace, amos2frg, amos2mates, amos2sq, amosvalidate, analyze-read-depth, analyzeSNPs, arachne2ctg, arachne2scaff, arrive, arrive2, asmQC, asmQC2, assembleRNAs, astats, bank-clean, bank-combine, bank-mapping, bank-report, bank-transact, bank-tutorial, bank-unlock, bank2contig, bank2coverage, bank2fasta, bank2lib, bank2sam, bank2scaff, benchmark2arachne, benchmark2ca, benchmark2mates, benchmark2ta, benchmark_qual, benchmark_seq, blasr2coords, blat2nucmer, ca2ctg, ca2mates, ca2scaff, ca2singletons, ca2ta, casm-breaks, casm-layout, castats, cavalidate, cestat-cov, cgb2ctg, clk, clusterSnps, contig-cmp, contig2contig, coords2cam, count-kmers, count-qmers, ctg2fasta, ctg2umdcontig, ctgovl, cvgChop, cvgStat, delta2clr, delta2cvg, dumpContigsAsReads, dumpFeatures, dumpmates, dumpreads, excl_seqs, extractContig, extractScaffold, fasta_select_len, fasta_to_fastq, fastq64_to_fastq33, fastq_filter, fastq_rename, fastq_to_fasta_fast, fastqqc, filter_contig, filter_seq, filterfrg, find-duplicate-reads, find-query-breaks, find-tandem, findChimeras, findMissingMates, findTcovSnp, find_ends, fixfastq, fixfrg, fixlib, frg-umd-merge, frg2fasta, frg2fastq, frg2ta, gap-links, gc-content-plot, gccontent, gene_asm, genome-complexity, genome-complexity-fast, getFRCvalues, getN50, getlengths, goBambus2, grow-readbank, hash-overlap, insert-sizes, iterate, kmer-count, kmer-cov, kmer-cov-plot, kmers, ktrimfrg, library-histogram, list-linked-contigs, listGCContent, listReadPlacedStatus, listSingletonMates, listSurrogates, listcontigreads, load-overlaps, loadFeatures, make-consensus, make-consensus_poly, merge-contigs, message-count, message-extract, message-validate, minimus, minimus2, minimus2-blat, missing-reads, normalizeScaffold, nucmer2ovl, nucmerAnnotate, olapsFromContig, overlap-align, ovl-degr-dist, ovl2OVL, parsecasm, partitionBank, phd2afg, postCAqc, preTA, preassembleFrgs, printScaff, pullTArchive, pyrosim, qmer-filter, read-cov-plot, readinfo2cam, rearrangeSeqs, recallConsensus, renameReads, rerunMultiTest, resetFragLibrary, revFasta, revScaffold, runAmos, runMultiTest, runTA, runTest, running-cmp, samPileupConsensus, samtoafg, scaff2fasta, scaffoldRange2Ungapped, select-reads, show-ma-asm, shuffleBank, sidebyside, sim-cover-depth, sim-cover2, sim-shotgun, simple-overlap, simpleContigLoader, simplifyLibraries, singles, sort2, stats, summarizeMultiTest, suspiciousfeat2region, ta2ace, tab2ovls, tagsum-reduce, tandemCollapse, tarchive2amos, tarchive2ca, tigger, tiling2cam, toAmos, toAmos_new, toArachne, trace_comment, trace_comments, trace_convert, trace_scf_dump, trace_seq, translate-fasta, trimByOvl, trimends, trimfrg, untangle, updateBankPositions, updateClrRanges, updateDeltaClr, updateLibSizes, vecfix, verify-layout, jellyfish, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer |
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GITHUB
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quay.io/biocontainers/ampcombi |
shpc-registry automated BioContainers addition for ampcombi |
amp_database.py, amp_fasta.py, ampcombi, ampcombi.py, check_input.py, diamond_alignment.sh, diamond_makedb.sh, print_header.py, reformat_tables.py, diamond, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/ampd-up |
singularity registry hpc automated addition for ampd-up |
AMPd-Up, ninja, convert-caffe2-to-onnx, convert-onnx-to-caffe2, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, f2py3.6, futurize, pasteurize, protoc, 2to3-3.6, idle3.6, pydoc3.6, python3.6 |
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GITHUB
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quay.io/biocontainers/amplici |
singularity registry hpc automated addition for amplici |
run_AmpliCI |
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GITHUB
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quay.io/biocontainers/amplicon_coverage_plot |
shpc-registry automated BioContainers addition for amplicon_coverage_plot |
amplicov, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/ampliconclassifier |
shpc-registry automated BioContainers addition for ampliconclassifier |
amplicon_classifier.py, amplicon_similarity.py, amplicons_intersecting_bed.py, feature_similarity.py, make_input.sh, make_results_table.py, softlink_images.py, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp |
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GITHUB
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quay.io/biocontainers/ampliconsuite |
singularity registry hpc automated addition for ampliconsuite |
AmpliconSuite-pipeline.py, GroupedAnalysisAmpSuite.py, cnvkit.py, hb-info, flask, tjbench, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, qualfa2fq.pl, xa2multi.pl, bwa, futurize, pasteurize, fasta-sanitize.pl, plot-ampliconstats, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, f2py3.10, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl |
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GITHUB
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quay.io/biocontainers/amplicontyper |
singularity registry hpc automated addition for amplicontyper |
check_for_update.py, classifier_report.py, classify, classify.py, data_classes.py, genotyper_utilities, genotyper_utilities.py, hierarchy_utils.py, html_head.txt, input_processing.py, inputs_validation.py, map.py, model_manager.py, read_classifier.py, reporting_classes.py, train, train.py, x86_64-conda-linux-gnu.cfg, annot-tsv, numpy-config, sdust, paftools.js, k8, minimap2, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fasta-sanitize.pl, plot-ampliconstats, tqdm, normalizer, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite |
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GITHUB
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quay.io/biocontainers/amplify |
shpc-registry automated BioContainers addition for amplify |
AMPlify, train_amplify, theano-cache, theano-nose, freeze_graph, mako-render, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, markdown_py |
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GITHUB
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quay.io/biocontainers/ampligone |
singularity registry hpc automated addition for ampligone |
AmpliGone, ampligone, minimap2.py, cmark, pygmentize, futurize, pasteurize, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/amplisim |
singularity registry hpc automated addition for amplisim |
amplisim |
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GITHUB
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quay.io/biocontainers/amptk |
shpc-registry automated BioContainers addition for amptk |
amptk, amptk_synthetic_mock.py, bold2utax.py, distro, pyfastx, biom, FastTree-2.1.10.c, vsearch, FastTreeMP, FastTree, fasttree, mafft-sparsecore.rb, einsi, fftns, fftnsi |
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GITHUB
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quay.io/biocontainers/amulety |
singularity registry hpc automated addition for amulety |
amulety, datasets-cli, huggingface-cli, identify-cli, nodeenv, pre-commit, protoc-28.3.0, torchfrtrace, transformers-cli, typer, xxh3sum, virtualenv, checksum-profile, elastishadow, pybind11-config, get_gprof, torch_shm_manager, xxh128sum, xxh32sum, xxh64sum, xxhsum, isympy, torchrun, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, get_objgraph, undill, elasticurl, elasticurl_cpp, elastipubsub, markdown-it, csv-import, orc-memory, orc-scan |
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GITHUB
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quay.io/biocontainers/amused |
shpc-registry automated BioContainers addition for amused |
AMUSED, AMUSED-KS, alignKMers, bundle, bundler, racc, racc2y, shuffleCodons.rb, shuffleCodonsAddMotifs.rb, y2racc, gdbm_dump, gdbm_load, gdbmtool, jemalloc-config, jeprof, jemalloc.sh, erb, gem, irb, rake |
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GITHUB
|
quay.io/biocontainers/anadama2 |
shpc-registry automated BioContainers addition for anadama2 |
anadama2_aws_batch_task, ptangle, pweave, pweave-convert, pypublish, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run, iptest3, curve_keygen, iptest, ipython3, ipython, jupyter-trust |
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GITHUB
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quay.io/biocontainers/ananse |
shpc-registry automated BioContainers addition for ananse |
GenomeOntology.pl, HomerConfig.pm, HomerSVGLogo.pm, ProSampler, SIMA.pl, Statistics.pm, XXmotif, addData.pl, addDataHeader.pl, addGeneAnnotation.pl, addInternalData.pl, addOligos.pl, adjustPeakFile.pl, adjustRedunGroupFile.pl, analyzeChIP-Seq.pl, analyzeHiC, analyzeRNA.pl, analyzeRepeats.pl, ananse, annotateInteractions.pl, annotatePeaks.pl, annotateRelativePosition.pl, annotateTranscripts.pl, assignGeneWeights.pl, assignGenomeAnnotation, assignTSStoGene.pl, batchAnnotatePeaksHistogram.pl, batchFindMotifs.pl, batchFindMotifsGenome.pl, batchMakeHiCMatrix.pl, batchMakeMultiWigHub.pl, batchMakeTagDirectory.pl, batchParallel.pl, bed2DtoUCSCbed.pl, bed2pos.pl, bed2tag.pl, bedToGenePred, bigBedToBed, blat2gtf.pl, bridgeResult2Cytoscape.pl, changeNewLine.pl, checkPeakFile.pl, checkTagBias.pl, chopUpBackground.pl, chopUpPeakFile.pl, chopify.pl, cleanUpPeakFile.pl, cleanUpSequences.pl, cluster2bed.pl, cluster2bedgraph.pl, combineGO.pl, combineHubs.pl, combine_peaks, compareMotifs.pl, condenseBedGraph.pl, cons2fasta.pl, conservationAverage.pl, conservationPerLocus.pl, convertCoordinates.pl, convertIDs.pl, convertOrganismID.pl, coverage_table, dinamo, dreme-py3, dtc, duplicateCol.pl, eland2tags.pl, fasta-dinucleotide-shuffle-py3, fasta-hamming-enrich-py3, fasta-re-match, fasta2tab.pl, fastq2fasta.pl, filterListBy.pl, filterTADsAndCPs.pl, filterTADsAndLoops.pl, findGO.pl, findGOtxt.pl, findHiCCompartments.pl, findHiCDomains.pl, findHiCInteractionsByChr.pl, findKnownMotifs.pl, findMotifs.pl, findMotifsGenome.pl, findPeaks, findRedundantBLAT.pl, findTADsAndLoops.pl, findTADsAndLoopsFromRelMatrix, findTopMotifs.pl, findcsRNATSS.pl, flipPC1toMatch.pl, freq2group.pl, gadem, genePredToBed, genePredToGtf, genericConvertIDs.pl, genomeOntology, genomepy, getChrLengths.pl, getConservedRegions.pl, getDiffExpression.pl, getDifferentialBedGraph.pl, getDifferentialPeaks, getDifferentialPeaksReplicates.pl, getDistalPeaks.pl, getFocalPeaks.pl, getGWASoverlap.pl, getGenesInCategory.pl, getGenomeTilingPeaks, getHiCcorrDiff.pl, getHomerQCstats.pl, getLikelyAdapters.pl, getMappableRegions, getMappingStats.pl, getPartOfPromoter.pl, getPeakTags, getPos.pl, getRandomReads.pl, getSiteConservation.pl, getTopPeaks.pl, gff2pos.pl, gff3ToGenePred, gimme, go2cytoscape.pl, groupSequences.pl, gtfToGenePred, homer, homer2, homerTools, joinFiles.pl, lightning_predict, lightning_train, loadGenome.pl, loadPromoters.pl, makeBigBedMotifTrack.pl, makeBigWig.pl, makeBinaryFile.pl, makeHiCWashUfile.pl, makeMetaGeneProfile.pl, makeMultiWigHub.pl, makeTagDirectory, makeUCSCfile, map-fastq.pl, meme-chip_html_to_tsv, merge2Dbed.pl, mergeData.pl, mergePeaks, momo, motif2Jaspar.pl, motif2Logo.pl, parseGTF.pl, plasma_store_server, pos2bed.pl, prepForR.pl, preparseGenome.pl, profile2seq.pl, qseq2fastq.pl, randRemoveBackground.pl, randomizeGroupFile.pl, randomizeMotifs.pl, removeAccVersion.pl, removeBadSeq.pl, removeOutOfBoundsReads.pl, removePoorSeq.pl, removeRedundantPeaks.pl, renamePeaks.pl, resizePosFile.pl, revoppMotif.pl, rotateHiCmatrix.pl, runHiCpca.pl, sam2spliceJunc.pl, scanMotifGenomeWide.pl, scrambleFasta.pl, selectRepeatBg.pl, seq2profile.pl, subtractBedGraphs.pl, subtractBedGraphsDirectory.pl, tab2fasta.pl, tag2bed.pl, tag2pos.pl, tagDir2HiCsummary.pl, tagDir2bed.pl, tagDir2hicFile.pl, thrift, trawler, weeder2, xsltproc_lite, zipHomerResults.pl, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip |
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GITHUB
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quay.io/biocontainers/anansescanpy |
singularity registry hpc automated addition for anansescanpy |
hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, tjbench, aec, scanpy, numba, pycc, natsort, fonttools, pyftmerge, pyftsubset, ttx, normalizer, tqdm, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug |
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GITHUB
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quay.io/biocontainers/anansnake |
singularity registry hpc automated addition for anansnake |
anansnake, bedToGenePred, bsdcat, bsdcpio, bsdtar, conda2solv, deseq2science, dumpsolv, genePredToBed, genePredToGtf, genomepy, gff3ToGenePred, gtfToGenePred, installcheck, mamba, mamba-package, matplotlib, mergesolv, pysradb, repo2solv, seq2science, testsolv, nosetests-3.9, conda-env, cph, plac_runner.py, yte, docutils, nosetests, pulptest, cbc, clp, vcf_sample_filter.py, vcf_filter.py, vcf_melt, snakemake, snakemake-bash-completion, tabulate, jupyter-trust, faidx, jupyter, jupyter-migrate, jupyter-troubleshoot, my_print_defaults, mysql_config, perror, rst2html4.py |
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GITHUB
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quay.io/biocontainers/anarci |
shpc-registry automated BioContainers addition for anarci |
ANARCI, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat |
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GITHUB
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quay.io/biocontainers/ancestry_hmm-s |
shpc-registry automated BioContainers addition for ancestry_hmm-s |
ahmm-s |
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GITHUB
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quay.io/biocontainers/anchorwave |
shpc-registry automated BioContainers addition for anchorwave |
anchorwave, anchorwave_avx2, anchorwave_avx512, anchorwave_sse2, anchorwave_sse4.1, atoiindex, bulk-counts, cmetindex, configure, cpuid, dbsnp_iit, ensembl_genes, fa_coords, get-genome, gff3_genes, gff3_introns, gff3_splicesites, gmap.nosimd, gmap.sse42, gmap_build, gmap_cat, gmap_process, gmapindex, gmapl, gmapl.nosimd, gmapl.sse42, gsnap, gsnap.nosimd, gsnap.sse42, gsnapl, gsnapl.nosimd, gsnapl.sse42, gtf_genes, gtf_introns, gtf_splicesites, gtf_transcript_splicesites, gvf_iit, iit_dump, iit_get, iit_store, indexdb_cat, md_coords, psl_genes, psl_introns, psl_splicesites, sam_sort, sc-counts, snpindex, trindex, vcf_iit, velocity-counts, gmap, sdust, paftools.js, minimap2, k8, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/andi |
shpc-registry automated BioContainers addition for andi |
andi, gsl-randist |
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GITHUB
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quay.io/biocontainers/anglerfish |
shpc-registry automated BioContainers addition for anglerfish |
anglerfish, sdust, paftools.js, minimap2, k8, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/angsd |
shpc-registry automated BioContainers addition for angsd |
NGSadmix, angsd, contamination, contamination2, haploToPlink, ibs, msHOT2glf, msToGlf, ngsPSMC, printIcounts, realSFS, scounts, smartCount, splitgl, supersim, thetaStat, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/aniclustermap |
singularity registry hpc automated addition for aniclustermap |
ANIclustermap, f2py3.11, skani, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fastANI, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/anise_basil |
shpc-registry automated BioContainers addition for anise_basil |
anise, basil, filter_basil.py, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
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quay.io/biocontainers/aniso8601 |
shpc-registry automated BioContainers addition for aniso8601 |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/anndata |
shpc-registry automated BioContainers addition for anndata |
natsort, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, h5clear |
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GITHUB
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quay.io/biocontainers/anndata2ri |
shpc-registry automated BioContainers addition for anndata2ri |
dunamai, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, natsort, mirror_server, mirror_server_stop |
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GITHUB
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quay.io/biocontainers/annembed |
singularity registry hpc automated addition for annembed |
annembed |
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GITHUB
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quay.io/biocontainers/annonars |
singularity registry hpc automated addition for annonars |
annonars |
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GITHUB
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quay.io/biocontainers/annosine2 |
singularity registry hpc automated addition for annosine2 |
RM2Bed.py, annosine2, buildRMLibFromEMBL.pl, buildSummary.pl, corepack, h5tools_test_utils, irf, makeclusterdb, maskFile.pl, wublastToCrossmatch.pl, DateRepeats, DupMasker, ProcessRepeats, RepeatMasker, RepeatProteinMask, calcDivergenceFromAlign.pl, createRepeatLandscape.pl, dupliconToSVG.pl, getRepeatMaskerBatch.pl, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, trfMask, npx, rmblastn, node, npm, blast_report, blastdb_convert, blastdb_path, trf, h5fuse.sh, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl |
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GITHUB
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quay.io/biocontainers/annotsv |
singularity registry hpc automated addition for annotsv |
AnnotSV, INSTALL_annotations.sh, variantconvert, funzip, unzipsfx, zipgrep, zipinfo, unzip, f2py3.11, gff2gff.py, vcf_sample_filter.py, basenc, vcf_filter.py, vcf_melt, b2sum, ls, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp |
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GITHUB
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quay.io/biocontainers/annotwg |
singularity registry hpc automated addition for annotwg |
annotwg, bash, bashbug, cutGenome, egrep, fgrep, grep, gff2gff.py, gawk-5.1.0, basenc, awk, b2sum, gawk, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd |
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GITHUB
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quay.io/biocontainers/anospp-analysis |
singularity registry hpc automated addition for anospp-analysis |
anospp-prep, anospp-qc, tjbench, cutadapt, FastTreeMP, FastTree, fasttree, igzip, pbunzip2, pbzcat, pbzip2, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns, mafft-fftnsi, mafft-ginsi, mafft-homologs.rb, mafft-linsi, mafft-nwns, mafft-nwnsi, mafft-profile |
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GITHUB
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quay.io/biocontainers/ansible |
shpc-registry automated BioContainers addition for ansible |
ansible, ansible-doc, ansible-galaxy, ansible-playbook, ansible-pull, ansible-vault, smtpd.pyc, easy_install-2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5 |
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GITHUB
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quay.io/biocontainers/ant |
shpc-registry automated BioContainers addition for ant |
ant, ant.bat, ant.cmd, antRun, antRun.bat, antRun.pl, antenv.cmd, complete-ant-cmd.pl, envset.cmd, lcp.bat, runant.pl, runant.py, runrc.cmd, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/antarna |
shpc-registry automated BioContainers addition for antarna |
antarna.py, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex |
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GITHUB
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quay.io/biocontainers/antismash-lite |
shpc-registry automated BioContainers addition for antismash-lite |
antismash, download-antismash-databases, hmmalign2, hmmbuild2, hmmc2, hmmcalibrate2, hmmconvert2, hmmemit2, hmmerfm-exactmatch, hmmfetch2, hmmindex2, hmmpfam2, hmmsearch2, less2scss, pyscss, xsltproc_lite, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip |
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GITHUB
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quay.io/biocontainers/antismash |
shpc-registry automated BioContainers addition for antismash |
antismash, download-antismash-databases, hmmalign2, hmmbuild2, hmmc2, hmmcalibrate2, hmmconvert2, hmmemit2, hmmerfm-exactmatch, hmmfetch2, hmmindex2, hmmpfam2, hmmsearch2, less2scss, pyscss, xsltproc_lite, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip |
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GITHUB
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quay.io/biocontainers/anvio-minimal |
shpc-registry automated BioContainers addition for anvio-minimal |
anvi-analyze-synteny, anvi-cluster-contigs, anvi-compute-ani, anvi-compute-completeness, anvi-compute-functional-enrichment, anvi-compute-functional-enrichment-across-genomes, anvi-compute-functional-enrichment-in-pan, anvi-compute-gene-cluster-homogeneity, anvi-compute-genome-similarity, anvi-compute-metabolic-enrichment, anvi-db-info, anvi-delete-collection, anvi-delete-functions, anvi-delete-hmms, anvi-delete-misc-data, anvi-delete-state, anvi-dereplicate-genomes, anvi-display-contigs-stats, anvi-display-functions, anvi-display-metabolism, anvi-display-pan, anvi-display-structure, anvi-estimate-genome-completeness, anvi-estimate-genome-taxonomy, anvi-estimate-metabolism, anvi-estimate-scg-taxonomy, anvi-estimate-trna-taxonomy, anvi-experimental-organization, anvi-export-collection, anvi-export-contigs, anvi-export-functions, anvi-export-gene-calls, anvi-export-gene-coverage-and-detection, anvi-export-items-order, anvi-export-locus, anvi-export-misc-data, anvi-export-splits-and-coverages, anvi-export-splits-taxonomy, anvi-export-state, anvi-export-structures, anvi-export-table, anvi-gen-contigs-database, anvi-gen-fixation-index-matrix, anvi-gen-gene-consensus-sequences, anvi-gen-gene-level-stats-databases, anvi-gen-genomes-storage, anvi-gen-network, anvi-gen-phylogenomic-tree, anvi-gen-structure-database, anvi-gen-variability-matrix, anvi-gen-variability-network, anvi-gen-variability-profile, anvi-get-aa-counts, anvi-get-codon-frequencies, anvi-get-pn-ps-ratio, anvi-get-sequences-for-gene-calls, anvi-get-sequences-for-gene-clusters, anvi-get-sequences-for-hmm-hits, anvi-get-short-reads-from-bam, anvi-get-short-reads-mapping-to-a-gene, anvi-get-split-coverages, anvi-get-tlen-dist-from-bam, anvi-help, anvi-import-collection, anvi-import-functions, anvi-import-items-order, anvi-import-misc-data, anvi-import-state, anvi-import-taxonomy-for-genes, anvi-import-taxonomy-for-layers, anvi-init-bam, anvi-inspect, anvi-interactive, anvi-matrix-to-newick, anvi-mcg-classifier, anvi-merge, anvi-merge-bins, anvi-merge-trnaseq, anvi-meta-pan-genome, anvi-migrate, anvi-oligotype-linkmers, anvi-pan-genome, anvi-plot-trnaseq, anvi-profile, anvi-profile-blitz, anvi-push, anvi-refine, anvi-rename-bins, anvi-report-inversions, anvi-report-linkmers, anvi-run-hmms, anvi-run-interacdome, anvi-run-kegg-kofams, anvi-run-ncbi-cogs, anvi-run-pfams, anvi-run-scg-taxonomy, anvi-run-trna-taxonomy, anvi-run-workflow, anvi-scan-trnas, anvi-script-add-default-collection, anvi-script-augustus-output-to-external-gene-calls, anvi-script-checkm-tree-to-interactive, anvi-script-compute-ani-for-fasta, anvi-script-compute-bayesian-pan-core, anvi-script-enrichment-stats, anvi-script-estimate-genome-size, anvi-script-filter-fasta-by-blast, anvi-script-filter-hmm-hits-table, anvi-script-fix-homopolymer-indels, anvi-script-gen-CPR-classifier, anvi-script-gen-distribution-of-genes-in-a-bin, anvi-script-gen-functions-per-group-stats-output, anvi-script-gen-genomes-file, anvi-script-gen-help-pages, anvi-script-gen-hmm-hits-matrix-across-genomes, anvi-script-gen-programs-network, anvi-script-gen-programs-vignette, anvi-script-gen-pseudo-paired-reads-from-fastq, anvi-script-gen-scg-domain-classifier, anvi-script-gen-short-reads, anvi-script-gen_stats_for_single_copy_genes.R, anvi-script-gen_stats_for_single_copy_genes.py, anvi-script-gen_stats_for_single_copy_genes.sh, anvi-script-get-collection-info, anvi-script-get-coverage-from-bam, anvi-script-get-hmm-hits-per-gene-call, anvi-script-get-primer-matches, anvi-script-merge-collections, anvi-script-permute-trnaseq-seeds, anvi-script-pfam-accessions-to-hmms-directory, anvi-script-predict-CPR-genomes, anvi-script-process-genbank, anvi-script-process-genbank-metadata, anvi-script-reformat-fasta, anvi-script-run-eggnog-mapper, anvi-script-snvs-to-interactive, anvi-script-tabulate, anvi-script-transpose-matrix, anvi-script-variability-to-vcf, anvi-script-visualize-split-coverages, anvi-search-functions, anvi-search-palindromes, anvi-search-sequence-motifs, anvi-self-test, anvi-setup-interacdome, anvi-setup-kegg-kofams, anvi-setup-ncbi-cogs, anvi-setup-pdb-database, anvi-setup-pfams, anvi-setup-scg-taxonomy, anvi-setup-trna-taxonomy, anvi-show-collections-and-bins, anvi-show-misc-data, anvi-split, anvi-summarize, anvi-summarize-blitz, anvi-tabulate-trnaseq, anvi-trnaseq, anvi-update-db-description, anvi-update-structure-database, anvi-upgrade, average_nucleotide_identity.py, bottle.py, delta_filter_wrapper.py, django-admin, django-admin.py, genbank_get_genomes_by_taxon.py, iu-compute-qual-dicts-from-fastq, iu-deinterleave-fastq, iu-demultiplex, iu-fasta-to-fastq, iu-fastq-to-fasta, iu-filter-merged-reads, iu-filter-quality-bokulich, iu-filter-quality-minoche, iu-gen-configs, iu-gen-matching-fastq-files, iu-interleave-fastq, iu-merge-pairs, iu-remove-ids-from-fastq, iu-subsample-fastq, iu-trim-V6-primers, iu-trim-fastq, iu-visualize-mismatch-distribution, iu-visualize-plot-dicts, iu-visualize-qual-dicts, sqlformat, filter-table, spdi2prod, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb |
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GITHUB
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quay.io/biocontainers/anvio |
shpc-registry automated BioContainers addition for anvio |
EukHighConfidenceFilter, anvi-analyze-synteny, anvi-cluster-contigs, anvi-compute-ani, anvi-compute-completeness, anvi-compute-gene-cluster-homogeneity, anvi-compute-genome-similarity, anvi-db-info, anvi-delete-collection, anvi-delete-hmms, anvi-delete-misc-data, anvi-delete-state, anvi-dereplicate-genomes, anvi-display-contigs-stats, anvi-display-pan, anvi-display-structure, anvi-estimate-genome-completeness, anvi-estimate-genome-taxonomy, anvi-estimate-scg-taxonomy, anvi-experimental-organization, anvi-export-collection, anvi-export-contigs, anvi-export-functions, anvi-export-gene-calls, anvi-export-gene-coverage-and-detection, anvi-export-items-order, anvi-export-locus, anvi-export-misc-data, anvi-export-splits-and-coverages, anvi-export-splits-taxonomy, anvi-export-state, anvi-export-structures, anvi-export-table, anvi-gen-contigs-database, anvi-gen-fixation-index-matrix, anvi-gen-gene-consensus-sequences, anvi-gen-gene-level-stats-databases, anvi-gen-genomes-storage, anvi-gen-network, anvi-gen-phylogenomic-tree, anvi-gen-structure-database, anvi-gen-variability-matrix, anvi-gen-variability-network, anvi-gen-variability-profile, anvi-get-aa-counts, anvi-get-codon-frequencies, anvi-get-enriched-functions-per-pan-group, anvi-get-sequences-for-gene-calls, anvi-get-sequences-for-gene-clusters, anvi-get-sequences-for-hmm-hits, anvi-get-short-reads-from-bam, anvi-get-short-reads-mapping-to-a-gene, anvi-get-split-coverages, anvi-help, anvi-import-collection, anvi-import-functions, anvi-import-items-order, anvi-import-misc-data, anvi-import-state, anvi-import-taxonomy-for-genes, anvi-import-taxonomy-for-layers, anvi-init-bam, anvi-inspect, anvi-interactive, anvi-matrix-to-newick, anvi-mcg-classifier, anvi-merge, anvi-merge-bins, anvi-meta-pan-genome, anvi-migrate, anvi-oligotype-linkmers, anvi-pan-genome, anvi-profile, anvi-push, anvi-refine, anvi-rename-bins, anvi-report-linkmers, anvi-run-hmms, anvi-run-ncbi-cogs, anvi-run-pfams, anvi-run-scg-taxonomy, anvi-run-workflow, anvi-scan-trnas, anvi-script-FASTA-to-contigs-db, anvi-script-add-default-collection, anvi-script-calculate-pn-ps-ratio, anvi-script-checkm-tree-to-interactive, anvi-script-compute-ani-for-fasta, anvi-script-estimate-genome-size, anvi-script-filter-fasta-by-blast, anvi-script-gen-CPR-classifier, anvi-script-gen-distribution-of-genes-in-a-bin, anvi-script-gen-hmm-hits-matrix-across-genomes, anvi-script-gen-programs-network, anvi-script-gen-programs-vignette, anvi-script-gen-scg-domain-classifier, anvi-script-gen-short-reads, anvi-script-gen_stats_for_single_copy_genes.R, anvi-script-gen_stats_for_single_copy_genes.py, anvi-script-gen_stats_for_single_copy_genes.sh, anvi-script-get-collection-info, anvi-script-get-coverage-from-bam, anvi-script-get-hmm-hits-per-gene-call, anvi-script-get-short-reads-matching-something, anvi-script-merge-collections, anvi-script-predict-CPR-genomes, anvi-script-process-genbank, anvi-script-process-genbank-metadata, anvi-script-reformat-fasta, anvi-script-run-eggnog-mapper, anvi-script-run-functional-enrichment-stats, anvi-script-snvs-to-interactive, anvi-script-transpose-matrix, anvi-script-variability-to-vcf, anvi-script-visualize-split-coverages, anvi-search-functions, anvi-self-test, anvi-setup-ncbi-cogs, anvi-setup-pdb-database, anvi-setup-pfams, anvi-setup-scg-databases, anvi-show-collections-and-bins, anvi-show-misc-data, anvi-split, anvi-summarize, anvi-threshold-taxonomy, anvi-update-db-description, anvi-update-structure-database, anvi-upgrade, average_nucleotide_identity.py, bottle.py, calc-prorate, centrifuge, centrifuge-BuildSharedSequence.pl, centrifuge-RemoveEmptySequence.pl, centrifuge-RemoveN.pl, centrifuge-build, centrifuge-build-bin, centrifuge-class, centrifuge-compress.pl, centrifuge-download, centrifuge-inspect, centrifuge-inspect-bin, centrifuge-kreport, centrifuge-sort-nt.pl, centrifuge_evaluate.py, centrifuge_simulate_reads.py, cheroot, cherryd, covels-SE, coves-SE, delta_filter_wrapper.py, django-admin, django-admin.py, eufindtRNA, fasta2gsi, genbank_get_genomes_by_taxon.py, iu-compute-qual-dicts-from-fastq, iu-deinterleave-fastq, iu-demultiplex, iu-fasta-to-fastq, iu-fastq-to-fasta, iu-filter-merged-reads, iu-filter-quality-bokulich, iu-filter-quality-minoche, iu-gen-configs, iu-gen-matching-fastq-files, iu-interleave-fastq, iu-merge-pairs, iu-remove-ids-from-fastq, iu-subsample-fastq, iu-trim-V6-primers, iu-trim-fastq, iu-visualize-mismatch-distribution, iu-visualize-plot-dicts, iu-visualize-qual-dicts, sqlformat, sstofa, tRNAscan-SE, tRNAscan-SE.conf, trnascan-1.4, readal, statal, trimal, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, megahit, megahit_toolkit, bl2seq, blastall |
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GITHUB
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quay.io/biocontainers/any2fasta |
shpc-registry automated BioContainers addition for any2fasta |
any2fasta, perl5.32.0, streamzip |
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GITHUB
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quay.io/biocontainers/aodp |
shpc-registry automated BioContainers addition for aodp |
aodp, x86_64-conda_cos7-linux-gnu-ld, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches |
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GITHUB
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quay.io/biocontainers/aplanat |
shpc-registry automated BioContainers addition for aplanat |
aplanat, font-awesome-to-png, icon-font-to-png, bokeh, markdown_py, f2py3.10, chardetect, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10 |
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GITHUB
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quay.io/biocontainers/apoc |
shpc-registry automated BioContainers addition for apoc |
apoc |
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GITHUB
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quay.io/biocontainers/apollo |
shpc-registry automated BioContainers addition for apollo |
arrow, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
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GITHUB
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quay.io/biocontainers/appspam |
shpc-registry automated BioContainers addition for appspam |
appspam |
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GITHUB
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quay.io/biocontainers/aprfinder |
singularity registry hpc automated addition for aprfinder |
aprfinder |
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GITHUB
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quay.io/biocontainers/apscale |
singularity registry hpc automated addition for apscale |
apscale, csv-import, demultiplexer, orc-memory, orc-scan, psghelp, psgissue, psgmain, psgsettings, psgupgrade, psgver, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, cutadapt, vsearch, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, protoc, tqdm, f2py3.9 |
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GITHUB
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quay.io/biocontainers/apt-probeset-summarize |
shpc-registry automated BioContainers addition for apt-probeset-summarize |
apt-probeset-summarize |
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GITHUB
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quay.io/biocontainers/aptardi |
shpc-registry automated BioContainers addition for aptardi |
aptardi, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, pyrsa-decrypt, pyrsa-encrypt |
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GITHUB
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quay.io/biocontainers/apu-label-propagation |
singularity registry hpc automated addition for apu-label-propagation |
apu-label-propagation |
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GITHUB
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quay.io/biocontainers/aquamis |
shpc-registry automated BioContainers addition for aquamis |
aquamis, aquamis_setup.sh, bracken, bracken-build, combine_bracken_outputs.py, confindr, confindr.py, confindr_create_db, confindr_database_setup, create_sampleSheet.sh, est_abundance.py, filter_json.py, generate_kmer_distribution.py, genson, helper_functions.py, icarus.py, kma, kma_index, kma_shm, kma_update, kmer2read_distr, kraken2, kraken2-build, kraken2-inspect, lighter, metaquast, metaquast.py, mlst, parse_json.py, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, shovill, skesa, taxonkit, write_QC_report.Rmd, write_report.Rmd, kmutate.sh, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, rsync-ssl, runhmm.sh, circos, circos.exe, compile.bat, compile.make |
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GITHUB
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quay.io/biocontainers/aquila |
shpc-registry automated BioContainers addition for aquila |
Aquila_assembly_based_variants_call, Aquila_clean, Aquila_phasing_all_variants, Aquila_step0_sortbam, Aquila_step0_sortbam_multilibs, Aquila_step1, Aquila_step1_multilibs, Aquila_step2, paftools.js, minimap2, k8, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
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GITHUB
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quay.io/biocontainers/aquila_stlfr |
shpc-registry automated BioContainers addition for aquila_stlfr |
Aquila_stLFR_assembly_based_variants_call, Aquila_stLFR_clean, Aquila_stLFR_fastq_preprocess, Aquila_stLFR_phasing_all_variants, Aquila_stLFR_step1, Aquila_stLFR_step2, Aquila_step0_sortbam_hybrid, Aquila_step1_hybrid, paftools.js, minimap2, k8, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
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GITHUB
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quay.io/biocontainers/aquila_sv |
shpc-registry automated BioContainers addition for aquila_sv |
AquilaSV_step1, AquilaSV_step2, AquilaSV_step3, sdust, paftools.js, minimap2, k8, fasta-sanitize.pl, plot-ampliconstats, f2py3.9, ace2sam, blast2sam.pl, bowtie2sam.pl |
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GITHUB
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quay.io/biocontainers/aquila_umap |
shpc-registry automated BioContainers addition for aquila_umap |
aquila_umap, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, 2to3-3.7 |
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GITHUB
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quay.io/biocontainers/aquilasv |
shpc-registry automated BioContainers addition for aquilasv |
AquilaSV_step1, AquilaSV_step2, AquilaSV_step3, cds-mapping-stats, cds-subgraphs, mag-improve, spades-convert-bin-to-fasta, spades-gsimplifier, spades-kmer-estimating, spades-read-filter, spaligner, spades-bwa, spades-core |
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GITHUB
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quay.io/biocontainers/aragorn |
shpc-registry automated BioContainers addition for aragorn |
aragorn |
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GITHUB
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quay.io/biocontainers/arb-bio-devel |
shpc-registry automated BioContainers addition for arb-bio-devel |
DrawGram.jar, DrawTree.jar, arb, arb_2_ascii, arb_2_bin, arb_a2ps, arb_bootstrap, arb_clean, arb_consensus_tree, arb_convert_aln, arb_db_server, arb_dist, arb_dnapars, arb_dnarates, arb_echo, arb_edit4, arb_export_rates, arb_export_tree, arb_fastdnaml, arb_flush_mem, arb_gene_probe, arb_help2xml, arb_help_useredit.sh, arb_ign, arb_installubuntu4arb.sh, arb_launcher, arb_ludwig, arb_macsetup, arb_message, arb_naligner, arb_name_server, arb_nexus2newick.awk, arb_notify, arb_ntree, arb_panic, arb_pars, arb_phylo, arb_phyml, arb_primer, arb_probe, arb_proml, arb_proto_2_xsub, arb_protpars, arb_pt_server, arb_raxml, arb_read_tree, arb_readlink, arb_readseq, arb_remote, arb_repair, arb_replace, arb_rexec, arb_rnacma, arb_sed, arb_sleep, arb_textedit, arb_textprint, arb_trace, arb_treegen, arb_wait, arb_wetc, arb_who, clique, consense, contml, contrast, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, dollop, dolmove, dolpenny, drawgram, drawgram_gui, drawtree, drawtree_gui, fig2dev, fig2ps2tex, fitch, gendist, kitsch, mb, mb-mpi, mix, move, mwm, neighbor, ompi-dvm, ompi-ps, ompi-top, orte-dvm, orte-ps, orte-top, pars, penny, phylip, phyml, phyml-mpi, pic2tpic, proml, promlk, protdist, protpars, prun, restdist, restml, retree, seqboot, transfig, treedist, uil, xfig, xmbind, gnuplot, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, FastTree-2.1.10.c, oshCC, oshc++ |
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GITHUB
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quay.io/biocontainers/arb-bio-tools |
shpc-registry automated BioContainers addition for arb-bio-tools |
arb_2_ascii, arb_2_bin, arb_a2ps, arb_consensus_tree, arb_convert_aln, arb_db_server, arb_dnarates, arb_export_rates, arb_export_tree, arb_flush_mem, arb_gene_probe, arb_help2xml, arb_message, arb_naligner, arb_name_server, arb_notify, arb_primer, arb_probe, arb_proto_2_xsub, arb_pt_server, arb_read_tree, arb_readseq, arb_replace, arb_rnacma, arb_treegen, gio-launch-desktop |
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GITHUB
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quay.io/biocontainers/arb-bio |
shpc-registry automated BioContainers addition for arb-bio |
DrawGram.jar, DrawTree.jar, arb, arb_2_ascii, arb_2_bin, arb_a2ps, arb_bootstrap, arb_clean, arb_consensus_tree, arb_convert_aln, arb_db_server, arb_dist, arb_dnapars, arb_dnarates, arb_echo, arb_edit4, arb_export_rates, arb_export_tree, arb_fastdnaml, arb_flush_mem, arb_gene_probe, arb_help2xml, arb_help_useredit.sh, arb_ign, arb_installubuntu4arb.sh, arb_launcher, arb_ludwig, arb_macsetup, arb_message, arb_naligner, arb_name_server, arb_nexus2newick.awk, arb_notify, arb_ntree, arb_panic, arb_pars, arb_phylo, arb_phyml, arb_primer, arb_probe, arb_proml, arb_proto_2_xsub, arb_protpars, arb_pt_server, arb_raxml, arb_read_tree, arb_readlink, arb_readseq, arb_remote, arb_repair, arb_replace, arb_rexec, arb_rnacma, arb_sed, arb_sleep, arb_textedit, arb_textprint, arb_trace, arb_treegen, arb_wait, arb_wetc, arb_who, clique, consense, contml, contrast, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, dollop, dolmove, dolpenny, drawgram, drawgram_gui, drawtree, drawtree_gui, fig2dev, fig2ps2tex, fitch, gendist, kitsch, mb, mb-mpi, mix, move, mwm, neighbor, ompi-dvm, ompi-ps, ompi-top, orte-dvm, orte-ps, orte-top, pars, penny, phylip, phyml, phyml-mpi, pic2tpic, proml, promlk, protdist, protpars, prun, restdist, restml, retree, seqboot, transfig, treedist, uil, xfig, xmbind, gnuplot, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, FastTree-2.1.10.c, oshCC, oshc++ |
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GITHUB
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quay.io/biocontainers/arborator |
singularity registry hpc automated addition for arborator |
arborator, gas, profile_dists, cpuinfo, h5tools_test_utils, cmtime, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, mckey, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, ucmatose, udaddy, udpong, io_demo |
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GITHUB
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quay.io/biocontainers/arboreto |
shpc-registry automated BioContainers addition for arboreto |
dask-scheduler, dask-ssh, dask-worker, bokeh, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/arcas-hla |
shpc-registry automated BioContainers addition for arcas-hla |
arcasHLA, git-lfs, kallisto, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
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GITHUB
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quay.io/biocontainers/archer |
shpc-registry automated BioContainers addition for archer |
archer |
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GITHUB
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quay.io/biocontainers/architeuthis |
singularity registry hpc automated addition for architeuthis |
architeuthis, taxonkit |
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GITHUB
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quay.io/biocontainers/arcs |
shpc-registry automated BioContainers addition for arcs |
arcs, arcs-make, long-to-linked-pe |
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GITHUB
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quay.io/biocontainers/arcsv |
singularity registry hpc automated addition for arcsv |
ArcSV, BKinCheck.pl, BKinCheck_len.pl, bed2pos, createClip.sh, extractBK_bam.sh, extractSoftclipped, fastqToBKS.pl, filter_PopSpec_AF.sh, find_record.sh, format_header.txt, gen_pop_bed.sh, generateBKSinArc.sh, generateBKSinArc_each.sh, generateBKSinBam.pl, generateBKSinBam.sh, generateBKSinBam_each.sh, getSoftclippedAndNearbySeq.py, getfastq.sh, pos2bed, transDeepMEI2BK.sh, gff2gff.py, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, build_env_setup.sh, shiftBed, conda_build.sh, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed |
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GITHUB
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quay.io/biocontainers/arem |
shpc-registry automated BioContainers addition for arem |
arem, elandexport2bed, elandmulti2bed, elandresult2bed, wignorm, sam2bed, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/argh |
shpc-registry automated BioContainers addition for argh |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/argnorm |
singularity registry hpc automated addition for argnorm |
argnorm, pronto, py.test, pytest, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/argopy |
singularity registry hpc automated addition for argopy |
h5tools_test_utils, nc3tonc4, nc4tonc3, ncinfo, httpx, h5fuse.sh, h5delete, zipcmp, zipmerge, ziptool, 2to3-3.12, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff |
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GITHUB
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quay.io/biocontainers/argparse2tool |
shpc-registry automated BioContainers addition for argparse2tool |
argparse2tool, argparse2tool_check_path, futurize, pasteurize, xslt-config, xsltproc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/args_oap |
singularity registry hpc automated addition for args_oap |
args_oap, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, diamond, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl |
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GITHUB
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quay.io/biocontainers/argutils |
shpc-registry automated BioContainers addition for argutils |
2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/aria2 |
shpc-registry automated BioContainers addition for aria2 |
aria2c |
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GITHUB
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quay.io/biocontainers/ariba |
shpc-registry automated BioContainers addition for ariba |
ariba, bwa-spades, corrector, dipspades, dipspades.py, hammer, ionhammer, scaffold_correction, spades, fastaq, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div, cd-hit-div.pl, cd-hit-est-2d, cd-hit-para.pl, clstr2tree.pl |
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GITHUB
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quay.io/biocontainers/array-as-vcf |
shpc-registry automated BioContainers addition for array-as-vcf |
aav, array-as-vcf, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/arriba |
shpc-registry automated BioContainers addition for arriba |
arriba, convert_fusions_to_vcf.sh, draw_fusions.R, extract_fusion-supporting_alignments.sh, quantify_virus_expression.sh, run_arriba.sh, run_arriba_on_prealigned_bam.sh, STAR, STARlong, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long |
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GITHUB
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quay.io/biocontainers/arrow |
shpc-registry automated BioContainers addition for arrow |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/art |
shpc-registry automated BioContainers addition for art |
art_454, art_SOLiD, art_illumina |
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GITHUB
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quay.io/biocontainers/artemis |
shpc-registry automated BioContainers addition for artemis |
act, art, bamview, dnaplotter, writedb_entry, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/artex |
singularity registry hpc automated addition for artex |
artex, artex.py, clair3.py, libclair3.c, libclair3.o, longphase, pypy, pypy3, pypy3.6, run_clair3.sh, whatshap, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex, rst2xml, cpuinfo, gdbm_dump, gdbm_load, gdbmtool, import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, gff2gff.py, tf_upgrade_v2, pt2to3, ptdump, ptrepack, pttree, tflite_convert |
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GITHUB
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quay.io/biocontainers/artic-porechop |
shpc-registry automated BioContainers addition for artic-porechop |
porechop, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
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quay.io/biocontainers/artic-tools |
shpc-registry automated BioContainers addition for artic-tools |
artic-tools, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/artic |
shpc-registry automated BioContainers addition for artic |
align_trim, align_trim_n, artic, artic-tools, artic_fasta_header, artic_get_stats, artic_make_depth_mask, artic_mask, artic_vcf_filter, artic_vcf_merge, check_compression, compress_fast5, demux_fast5, fast5_subset, hdf2tf.py, longshot, margin_cons, margin_cons_medaka, medaka, medaka_consensus, medaka_counts, medaka_data_path, medaka_haploid_variant, medaka_version_report, mini_align, multi_to_single_fast5, nanopolish, nanopolish_makerange.py, nanopolish_merge.py, porechop, rich-click, single_to_multi_fast5, vcfextract, whatshap, multiqc, minimap2.py, racon, rampler, racon_wrapper, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin |
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GITHUB
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quay.io/biocontainers/arvados-cli |
shpc-registry automated BioContainers addition for arvados-cli |
arv, arv-crunch-job, arv-run-pipeline-instance, arv-tag, google-api, launchy, erb, gem, irb, rake, rdoc, ri, ruby, easy_install-3.5, 2to3-3.5, idle3.5 |
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GITHUB
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quay.io/biocontainers/arvados-cwl-runner |
shpc-registry automated BioContainers addition for arvados-cwl-runner |
arv-copy, arv-federation-migrate, arv-get, arv-keepdocker, arv-ls, arv-migrate-docker19, arv-normalize, arv-put, arv-ws, arvados-cwl-runner, bagit.py, cwl-runner, prov-compare, prov-convert, cwltool, schema-salad-doc, schema-salad-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, doesitcache, coloredlogs |
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GITHUB
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quay.io/biocontainers/arvados-python-client |
shpc-registry automated BioContainers addition for arvados-python-client |
arv-copy, arv-federation-migrate, arv-get, arv-keepdocker, arv-ls, arv-migrate-docker19, arv-normalize, arv-put, arv-ws, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, futurize, pasteurize, 2to3-3.8, idle3.8 |
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GITHUB
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quay.io/biocontainers/ascat |
shpc-registry automated BioContainers addition for ascat |
|
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GITHUB
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quay.io/biocontainers/asciigenome |
shpc-registry automated BioContainers addition for asciigenome |
ASCIIGenome, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/asgal |
singularity registry hpc automated addition for asgal |
SpliceAwareAligner, asgal, asgal_BitVector.py, asgal_SplicingGraph.py, asgal_detectEvents.py, asgal_formatSAM.py, asgal_utils.py, dimacs-solver, dimacs-to-lgf, lemon-0.x-to-1.x.sh, lgf-gen, salmon, gffutils-cli, cbc, clp, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, fasta-sanitize.pl, plot-ampliconstats, f2py3.10, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite |
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GITHUB
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quay.io/biocontainers/ashlar |
singularity registry hpc automated addition for ashlar |
aomdec, aomenc, ashlar, dav1d, make_alignment_movie, preview_slide, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, aec, imageio_download_bin, imageio_remove_bin, skivi, fitscopy, fpack, funpack, imcopy, smem, cups-config, ippeveprinter, ipptool, fonttools, pyftmerge, pyftsubset |
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GITHUB
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quay.io/biocontainers/ashleys-qc |
singularity registry hpc automated addition for ashleys-qc |
ashleys, py.test, pytest, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/askocli |
shpc-registry automated BioContainers addition for askocli |
askocli, chardetect, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/asn2gb |
shpc-registry automated BioContainers addition for asn2gb |
asn2gb, idn |
|
GITHUB
|
quay.io/biocontainers/aspera-cli |
singularity registry hpc automated addition for aspera-cli |
ascli, ascp, asession, aspera-license, rbs, rdbg, typeprof, racc, bundle, bundler, gdbm_dump, gdbm_load, gdbmtool, erb, gem, irb, rake, rdoc, ri, ruby |
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GITHUB
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quay.io/biocontainers/asqcan |
shpc-registry automated BioContainers addition for asqcan |
asqcan, blobtools, blobtools-build_nodesdb, icarus.py, metaquast, metaquast.py, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, circos, circos.exe, compile.bat, compile.make, gddiag, glimmerhmm, glimmhmm.pl, list.modules, test.modules, trainGlimmerHMM |
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GITHUB
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quay.io/biocontainers/assemblerflow |
shpc-registry automated BioContainers addition for assemblerflow |
assemblerflow, nextflow, nextflow.bak, giffilter, gifsponge, gifecho, gifinto, basenc, b2sum, base32, base64, basename, cat |
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GITHUB
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quay.io/biocontainers/assembly-scan |
shpc-registry automated BioContainers addition for assembly-scan |
assembly-scan, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/assembly-stats |
shpc-registry automated BioContainers addition for assembly-stats |
assembly-stats |
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GITHUB
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quay.io/biocontainers/assembly_finder |
singularity registry hpc automated addition for assembly_finder |
ascli, ascp, asession, aspera-license, assembly_finder, rbs, rdbg, typeprof, racc, bundle, bundler, mpg123, mpg123-id3dump, mpg123-strip, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, libgcrypt-config, mpicalc, yat2m, gdbm_dump, gdbm_load, gdbmtool, lame, erb, gem, irb, rake, rdoc, ri, ruby |
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GITHUB
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quay.io/biocontainers/assemblycomparator2 |
singularity registry hpc automated addition for assemblycomparator2 |
asscom2, bsdunzip, eido, jsondiff, jsonpatch, jsonpointer, protoc-24.3.0, mamba-package, conda2solv, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, bsdcat, bsdcpio, bsdtar, conda-env, cph, markdown-it, stone, yte, plac_runner.py, docutils, pulptest, cbc, clp, humanfriendly, snakemake, snakemake-bash-completion, jp.py |
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GITHUB
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quay.io/biocontainers/assemblytics |
shpc-registry automated BioContainers addition for assemblytics |
Assemblytics, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot |
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GITHUB
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quay.io/biocontainers/astalavista |
shpc-registry automated BioContainers addition for astalavista |
astalavista, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/aster |
singularity registry hpc automated addition for aster |
asterisk, astral, astral-pro |
|
GITHUB
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quay.io/biocontainers/astral-tree |
singularity registry hpc automated addition for astral-tree |
astral, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs, pack200, rmic, rmid, unpack200, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo |
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GITHUB
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quay.io/biocontainers/astropy |
shpc-registry automated BioContainers addition for astropy |
fits2bitmap, fitscheck, fitsdiff, fitsheader, fitsinfo, samp_hub, showtable, volint, wcslint, py.test, pytest, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7 |
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GITHUB
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quay.io/biocontainers/atactk |
shpc-registry automated BioContainers addition for atactk |
make_cut_matrix, make_midpoint_matrix, measure_features, measure_signal, plot_aggregate_cut_matrix.R, plot_aggregate_midpoint_matrix.R, plot_signal.R, trim_adapters, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, x86_64-conda-linux-gnu-gfortran.bin, pyvenv |
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GITHUB
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quay.io/biocontainers/ataqv |
shpc-registry automated BioContainers addition for ataqv |
ataqv, mkarv, srvarv, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
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GITHUB
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quay.io/biocontainers/athena_meta |
shpc-registry automated BioContainers addition for athena_meta |
Makefile, Makefile.am, Makefile.in, athena-meta, bazel-scan.py, fa2fq, fa2fq.o, filter_blat, filter_blat.o, filter_contigs, filter_contigs.o, filterfa, filterfa.o, flye, flye-assemble, flye-minimap2, flye-polish, flye-repeat, fq2fa, fq2fa.o, idba, idba.o, idba_hybrid, idba_hybrid.o, idba_subasm, idba_subasm.o, idba_tran, idba_tran.o, idba_tran_test, idba_tran_test.o, idba_ud, idba_ud.o, ipcluster, ipcontroller, ipengine, iptest2, ipython2, parallel_blat, parallel_blat.o, parallel_rna_blat, parallel_rna_blat.o, print_graph, print_graph.o, raw_n50, raw_n50.o, run-unittest.py, sample_reads, sample_reads.o, scaffold, scaffold.o, scan.py, shuffle_reads, shuffle_reads.o, sim_reads, sim_reads.o, sim_reads_tran, sim_reads_tran.o, sort_psl, sort_psl.o, sort_reads, sort_reads.o, split_fa, split_fa.o, split_fq, split_fq.o, split_scaffold, split_scaffold.o, test.o, validate_blat, validate_blat_parallel, validate_blat_parallel_local, validate_blat_parallel_rna, validate_component, validate_component.o, validate_contigs_blat, validate_contigs_blat.o, validate_contigs_mummer, validate_contigs_mummer.o, validate_mummer, validate_reads_blat, validate_reads_blat.o, validate_rna, validate_rna.o, jupyter-kernel, jupyter-kernelspec, jupyter-run, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py |
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GITHUB
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quay.io/biocontainers/atlas-data-import |
shpc-registry automated BioContainers addition for atlas-data-import |
data_import_post_install_tests.bats, data_import_post_install_tests.sh, get_experiment_data.R, import_classification_data.R, metadata_conda_debug.yaml, build_env_setup.sh, conda_build.sh, x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/atlas-fastq-provider |
shpc-registry automated BioContainers addition for atlas-fastq-provider |
abi-dump.2.11.0, abi-load, abi-load.2, abi-load.2.11.0, align-cache.2.11.0, align-info.2.11.0, atlas-fastq-provider-config.sh, atlas-fastq-provider-functions.sh, atlas-fastq-provider-post-install-tests.sh, bam-load.2.11.0, bam2fastq, bam_add_tags, bam_annotate.sh, bam_umi_count, bash, bashbug, cache-mgr.2.11.0, ccextract, ccextract.2, ccextract.2.11.0, cg-load.2.11.0, deinterleave_fastq.sh, fasterq-dump-orig.2.11.0, fasterq-dump.2.11.0, fastq-dump-orig.2.11.0, fastq-dump.2.11.0, fastq-load, fastq-load.2, fastq-load.2.11.0, fastq2bam, fastq_filter_n, fastq_filterpair, fastq_info, fastq_not_empty, fastq_num_reads, fastq_pre_barcodes, fastq_split_interleaved, fastq_tests, fastq_trim_poly_at, fastq_truncate, fastq_validator.sh, fetchEnaLibraryFastqs.sh, fetchFastq.sh, helicos-load, helicos-load.2, helicos-load.2.11.0, illumina-dump.2.11.0, illumina-load, illumina-load.2, illumina-load.2.11.0, initialiseEnaProbe.sh, kar.2.11.0, kdbmeta.2.11.0, kget.2.11.0, latf-load.2.11.0, md5cp.2.11.0, pacbio-load, pacbio-load.2, pacbio-load.2.11.0, pacbio-loadxml, pacbio-loadxml.2, pacbio-loadxml.2.11.0, prefetch-orig.2.11.0, prefetch.2.11.0, rcexplain.2.11.0, read-filter-redact.2.11.0, sam-dump-orig.2.11.0, sam-dump.2.11.0, sff-dump.2.11.0, sff-load, sff-load.2, sff-load.2.11.0, sra-pileup-orig.2.11.0, sra-pileup.2.11.0, sra-sort-cg.2.11.0, sra-sort.2.11.0, sra-stat.2.11.0, srapath-orig.2.11.0, srapath.2.11.0, sratools.2.11.0, srf-load, srf-load.2, srf-load.2.11.0, test-sra.2.11.0, validateUri.sh, vdb-config.2.11.0, vdb-copy.2.11.0, vdb-decrypt.2.11.0, vdb-diff.2.11.0, vdb-dump-orig.2.11.0, vdb-dump.2.11.0, vdb-encrypt.2.11.0, vdb-lock.2.11.0, vdb-passwd.2.11.0, vdb-unlock.2.11.0, vdb-validate.2.11.0, align-cache.2, md5cp.2, read-filter-redact.2, sra-sort-cg.2, vdb-diff.2, align-cache, fasterq-dump-orig, fastq-dump-orig, md5cp, prefetch-orig |
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GITHUB
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quay.io/biocontainers/atlas-gene-annotation-manipulation |
shpc-registry automated BioContainers addition for atlas-gene-annotation-manipulation |
gtf2featureAnnotation.R |
|
GITHUB
|
quay.io/biocontainers/atlas-metadata-validator |
shpc-registry automated BioContainers addition for atlas-metadata-validator |
atlas_validation.py, chardetect, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/atlas |
shpc-registry automated BioContainers addition for atlas |
atlas |
|
GITHUB
|
quay.io/biocontainers/atropos |
shpc-registry automated BioContainers addition for atropos |
atropos, tqdm, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/attotree |
singularity registry hpc automated addition for attotree |
attotree, quicktree, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/augur |
shpc-registry automated BioContainers addition for augur |
augur, dsdp5, treetime, vcftools, iqtree, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, FastTree-2.1.10.c, FastTreeMP, cmpfillin |
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GITHUB
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quay.io/biocontainers/augustus |
shpc-registry automated BioContainers addition for augustus |
PF00225_full.blocks.txt, PF00225_seed.blocks.txt, SplicedAlignment.pm, aa2nonred.pl, add_name_to_gff3.pl, aln2wig, augustify.py, augustus, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, bam2wig, bamToWig.py, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, cdbfasta, cdbyank, cegma2gff.pl, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, compare_masking.pl, compileSpliceCands, computeFlankingRegion.pl, createAugustusJoblist.pl, del_from_prfl.pl, evalCGP.pl, eval_dualdecomp.pl, eval_multi_gtf.pl, executeTestCGP.py, exonerate2hints.pl, exoniphyDb2hints.pl, extractAnno.py, extractTranscriptEnds.pl, filter-ppx.pl, filterGenes.pl, filterGenesIn.pl, filterGenesIn_mRNAname.pl, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, findGffNamesInFasta.pl, findRepetitiveProtSeqs.py, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, getAnnoFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, getSeq, get_loci_from_gb.pl, gff2gbSmallDNA.pl, gff2ps_mycustom, gffGetmRNA.pl, gp2othergp.pl, gtf2aa.pl, gtf2gff.pl, gth2gtf.pl, hal2maf_split.pl, helpMod.pm, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, load2sqlitedb, lp_solve, maf2conswig.pl, makeMatchLists.pl, makeUtrTrainingSet.pl, maskNregions.pl, merge_masking.pl, moveParameters.pl, msa2prfl.pl, new_species.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, peptides2alternatives.pl, peptides2hints.pl, phastconsDB2hints.pl, polyA2hints.pl, pp_simScore, prints2prfl.pl, pslMap.pl, randomSplit.pl, rename_species.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, samMap.pl, scipiogff2gff.pl, setStopCodonFreqs.pl, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, splitMfasta.pl, split_wiggle.pl, stringtie2fa.py, summarizeACGTcontent.pl, transMap2hints.pl, uniquePeptides.pl, utrgff2gbrowse.pl, utrrnaseq, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, yaml2gff.1.4.pl, bam2hints, etraining, fastBlockSearch, filterBam, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign, twoBitInfo, faToTwoBit |
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GITHUB
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quay.io/biocontainers/auriclass |
singularity registry hpc automated addition for auriclass |
auriclass, dmypy, mypy, mypyc, stubgen, stubtest, pyfastx, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, py.test, pytest, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/auspice |
shpc-registry automated BioContainers addition for auspice |
auspice, corepack, node, npm, npx |
|
GITHUB
|
quay.io/biocontainers/authentict |
singularity registry hpc automated addition for authentict |
AuthentiCT, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, normalizer, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl |
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GITHUB
|
quay.io/biocontainers/autobigs-cli |
singularity registry hpc automated addition for autobigs-cli |
autoBIGS, idle3.13, pydoc3.13, python3.13, python3.13-config, numpy-config |
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GITHUB
|
quay.io/biocontainers/autobigs-engine |
singularity registry hpc automated addition for autobigs-engine |
idle3.13, pydoc3.13, python3.13, python3.13-config, numpy-config |
|
GITHUB
|
quay.io/biocontainers/autocycler |
singularity registry hpc automated addition for autocycler |
autocycler |
|
GITHUB
|
quay.io/biocontainers/autodock-vina |
shpc-registry automated BioContainers addition for autodock-vina |
vina, vina_split |
|
GITHUB
|
quay.io/biocontainers/autodock |
shpc-registry automated BioContainers addition for autodock |
autodock4, autodock4.omp |
|
GITHUB
|
quay.io/biocontainers/autogenes |
shpc-registry automated BioContainers addition for autogenes |
get_objgraph, undill, natsort, mirror_server, mirror_server_stop, f2py3.9, opj_compress, opj_decompress, opj_dump, h5clear |
|
GITHUB
|
quay.io/biocontainers/autogrid |
singularity registry hpc automated addition for autogrid |
autogrid4 |
|
GITHUB
|
quay.io/biocontainers/autolog |
shpc-registry automated BioContainers addition for autolog |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/automappa |
singularity registry hpc automated addition for automappa |
automappa, autometa-bedtools-genomecov, autometa-benchmark, autometa-binning, autometa-binning-ldm, autometa-binning-ldm-loginfo, autometa-binning-summary, autometa-config, autometa-coverage, autometa-download-dataset, autometa-hmmsearch-filter, autometa-kmers, autometa-length-filter, autometa-markers, autometa-orfs, autometa-taxonomy, autometa-taxonomy-lca, autometa-taxonomy-majority-vote, autometa-unclustered-recruitment, autometa-update-databases, dash-generate-components, dash-update-components, editorconfig, gdown, js-beautify, renderer, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, doesitcache, flask, diamond, ipython3, parsort, ipython, cygdb, cython, cythonize, numba, pycc, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh |
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GITHUB
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quay.io/biocontainers/autometa |
shpc-registry automated BioContainers addition for autometa |
autometa, autometa-bedtools-genomecov, autometa-benchmark, autometa-binning, autometa-binning-ldm, autometa-binning-ldm-loginfo, autometa-binning-summary, autometa-config, autometa-coverage, autometa-download-dataset, autometa-hmmsearch-filter, autometa-kmers, autometa-length-filter, autometa-markers, autometa-orfs, autometa-taxonomy, autometa-taxonomy-lca, autometa-taxonomy-majority-vote, autometa-unclustered-recruitment, autometa-update-databases, gdown, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, doesitcache, ipython3, diamond, parsort |
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GITHUB
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quay.io/biocontainers/aviary |
singularity registry hpc automated addition for aviary |
Xcalcmem.sh, aviary, bloomfilterparser.sh, bsdcat, bsdcpio, bsdtar, conda2solv, dumpsolv, installcheck, mamba, mamba-package, mergesolv, repo2solv, testsolv, kmutate.sh, runhmm.sh, stone, conda-env, cph, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, plac_runner.py, sketchblacklist2.sh, splitribo.sh, yte, addssu.sh, adjusthomopolymers.sh, analyzeaccession.sh, analyzegenes.sh, applyvariants.sh, bbcms.sh, bloomfilter.sh, callgenes.sh, comparegff.sh |
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GITHUB
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quay.io/biocontainers/avro-cwl |
shpc-registry automated BioContainers addition for avro-cwl |
avro, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/avro-python2 |
shpc-registry automated BioContainers addition for avro-python2 |
avro, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/avro-python3 |
shpc-registry automated BioContainers addition for avro-python3 |
avro, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/avro |
shpc-registry automated BioContainers addition for avro |
avro, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/awscli |
shpc-registry automated BioContainers addition for awscli |
aws, aws.cmd, aws_completer, aws_zsh_completer.sh, pyrsa-decrypt-bigfile, pyrsa-encrypt-bigfile, jp.py, easy_install-3.5, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify |
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GITHUB
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quay.io/biocontainers/axiome |
shpc-registry automated BioContainers addition for axiome |
axiome, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/b2b-utils |
singularity registry hpc automated addition for b2b-utils |
DrawGram.jar, DrawTree.jar, TMalign, TMscore, attr, balsam, bam2consensus, bgzip.pl, blast2diamond, boot2frac, bstats, bundle, bundler, clique, comppair, consense, contml, contrast, conus_compare, conus_train, dca, decode_sam_flag, dialign-tx, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, dollop, dolmove, dolpenny, drawgram, drawgram_gui, drawtree, drawtree_gui, dumpsexp, fakealigner, faketree, famsa, fasta2nexus, fasta2phylip, fasttreeMP, fitch, fq_deinterleave, fq_interleave, frag_lens, gb2fasta, gendist, getfattr, gpg-error, gpgrt-config, guess_ill_instrument, hmac256, hmmeralign, hmmerbuild, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, hyperopt-mongo-worker, jackd, kalign, kitsch, lame, libgcrypt-config, lprodump, lrelease-pro, lstopo, lstopo-no-graphics, lupdate-pro, make_pscores.pl, matplotlib, meshdebug, minimeta, mix, move, mpg123, mpg123-id3dump, mpg123-strip, mpicalc, mustang, ncbi_blast_update, neighbor, opal.jar, orc-bugreport, orcc, out123, pModel, pa-info, pacat, pacmd, pactl, padaligner, padsp, pamon, paplay, parec, parecord, pars, pasuspender, penny, phylip, poa, probcons, probconsRNA, proml, promlk, protdist, protpars, pulseaudio, qbin, qmlformat, qmltime, qmltyperegistrar, qpaeq, racc, randtree, raxml, raxmlp, rbs, rdbg, restdist, restml, retree, rm_chim, rm_gaps, run_pasta.py, run_pasta_gui.py, run_seqtools.py, sap, scompare, seq_diff, seqboot, setfattr, sfold, shrink_bedgraph, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, strain_ml, summarize_assembly, sync_reads, tracegen, treedist, typeprof, uc, yat2m, clustalo, flac, gdbm_dump, gdbm_load, gdbmtool, metaflac, prank, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, aec, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb |
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GITHUB
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quay.io/biocontainers/b2btools |
shpc-registry automated BioContainers addition for b2btools |
torchrun, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, protoc, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli |
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GITHUB
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quay.io/biocontainers/bacgwasim |
shpc-registry automated BioContainers addition for bacgwasim |
BacGWASim, SimBac, gcta64, plink, snp-sites, stone, dendropy-format, x86_64-conda-linux-gnu-pkg-config, pulptest, Magick++-config, MagickCore-config, MagickWand-config, animate, composite |
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GITHUB
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quay.io/biocontainers/backports.csv |
shpc-registry automated BioContainers addition for backports.csv |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/backports.unittest_mock |
shpc-registry automated BioContainers addition for backports.unittest_mock |
pbr, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config |
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GITHUB
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quay.io/biocontainers/backspinpy |
shpc-registry automated BioContainers addition for backspinpy |
backspin, futurize, pasteurize, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
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quay.io/biocontainers/bacphlip |
shpc-registry automated BioContainers addition for bacphlip |
bacphlip, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/bactopia-assembler |
singularity registry hpc automated addition for bactopia-assembler |
assembly-scan, bactopia-assembler, check_compression, compress_fast5, coronaspades.py, demux_fast5, dragonflye, fast5_subset, flye, flye-minimap2, flye-modules, flye-samtools, hdf2tf.py, lighter, medaka, medaka_consensus, medaka_counts, medaka_data_path, medaka_haploid_variant, medaka_version_report, metaplasmidspades.py, metaviralspades.py, mini_align, miniasm, minidot, multi_to_single_fast5, nanoq, polypolish, polypolish_insert_filter.pxd, polypolish_insert_filter.py, porechop, rasusa, raven, rnaviralspades.py, shovill, shovill-se, single_to_multi_fast5, skesa, unicycler, whatshap, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, fastp, flash, megahit, megahit_toolkit, pilon, minimap2.py, samclip, velvetg, velveth, any2fasta, kmc, kmc_dump, kmc_tools, racon, rampler, racon_wrapper, estimator_ckpt_converter, docutils, cds-mapping-stats, cds-subgraphs, google-oauthlib-tool, mag-improve |
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GITHUB
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quay.io/biocontainers/bactopia-gather |
singularity registry hpc automated addition for bactopia-gather |
Xcalcmem.sh, abi-dump.3, abi-dump.3.0.3, align-info.3, align-info.3.0.3, aln2bed.pl, art_454, art_SOLiD, art_illumina, art_profiler_454, art_profiler_illumina, bactopia-gather, bloomfilterparser.sh, cache-mgr.3, cache-mgr.3.0.3, check-assembly-accession.py, check-corrupt, check-corrupt.3, check-corrupt.3.0.3, check-fastqs.py, combinedAvg.pl, empDist.pl, executor, fasterq-dump-orig.3.0.3, fasterq-dump.3, fasterq-dump.3.0.3, fastq-dl, fastq-dump-orig.3.0.3, fastq-dump.3, fastq-dump.3.0.3, fastq-scan, fastqReadAvg.pl, gimme_taxa.py, illumina-dump.3, illumina-dump.3.0.3, kdbmeta.3, kdbmeta.3.0.3, map2bed.pl, markdown-it, ncbi-genome-download, ngd, ngs-pileup, ngs-pileup.3, ngs-pileup.3.0.3, prefetch-orig.3.0.3, prefetch.3, prefetch.3.0.3, pysradb, rcexplain.3, rcexplain.3.0.3, ref-variation, ref-variation.3, ref-variation.3.0.3, rich-click, sam-dump-orig.3.0.3, sam-dump.3, sam-dump.3.0.3, sff-dump.3, sff-dump.3.0.3, sra-pileup-orig.3.0.3, sra-pileup.3, sra-pileup.3.0.3, sra-search, sra-search.3, sra-search.3.0.3, sra-stat.3, sra-stat.3.0.3, srapath-orig.3.0.3, srapath.3, srapath.3.0.3, sratools.3, sratools.3.0.3, summation.pl, test-sra.3, test-sra.3.0.3, var-expand, var-expand.3, var-expand.3.0.3, vdb-config.3, vdb-config.3.0.3, vdb-decrypt.3, vdb-decrypt.3.0.3, vdb-dump-orig.3.0.3, vdb-dump.3, vdb-dump.3.0.3, vdb-encrypt.3, vdb-encrypt.3.0.3, vdb-validate.3, vdb-validate.3.0.3, kmutate.sh, runhmm.sh, fasterq-dump-orig, fastq-dump-orig, prefetch-orig, sam-dump-orig, sra-pileup-orig, srapath-orig, kmerposition.sh, reformatpb.sh, sratools, summarizecoverage.sh, uuid, uuid-config, abi-dump, align-info, alltoall.sh, analyzesketchresults.sh, cache-mgr, comparessu.sh, fasterq-dump, fastq-dump, filtersilva.sh, illumina-dump, kdbmeta |
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GITHUB
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quay.io/biocontainers/bactopia-py |
singularity registry hpc automated addition for bactopia-py |
bactopia-citations, bactopia-download, bactopia-prepare, bactopia-search, bactopia-summary, executor, markdown-it, pysradb, rich-click, f2py3.11, coloredlogs, humanfriendly, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, pygmentize, xslt-config, xsltproc, tqdm, normalizer, python3.1 |
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GITHUB
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quay.io/biocontainers/bactopia-qc |
singularity registry hpc automated addition for bactopia-qc |
NanoPlot, Xcalcmem.sh, bactopia-qc, bloomfilterparser.sh, check-fastqs.py, csv-import, elasticurl, elasticurl_cpp, elastipubsub, fastq-scan, kaleido, lighter, mathjax-path, nanoq, orc-memory, orc-scan, porechop, produce_x_platform_fuzz_corpus, rasusa, run_x_platform_fuzz_corpus, timezone-dump, kmutate.sh, runhmm.sh, fastp, kmerposition.sh, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, reformatpb.sh, sha256_profile, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, rename, sketchblacklist2.sh, splitribo.sh, addssu.sh, adjusthomopolymers.sh, analyzeaccession.sh, analyzegenes.sh, applyvariants.sh, bbcms.sh |
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GITHUB
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quay.io/biocontainers/bactopia-sketcher |
singularity registry hpc automated addition for bactopia-sketcher |
bactopia-sketcher, sourmash, screed, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd, df |
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GITHUB
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quay.io/biocontainers/bactopia-teton |
singularity registry hpc automated addition for bactopia-teton |
alpha_diversity.py, bactopia-teton, beta_diversity.py, bracken, bracken-build, combine_bracken_outputs.py, combine_kreports.py, combine_mpa.py, est_abundance.py, extract_kraken_reads.py, fastq-scan, filter_bracken.out.py, fix_unmapped.py, generate_kmer_distribution.py, kmer2read_distr, kraken-bracken-summary.py, kraken2, kraken2-build, kraken2-inspect, kreport2krona.py, kreport2mpa.py, ktClassifyHits, ktImportHits, make_kreport.py, make_ktaxonomy.py, rsync-ssl, ktClassifyBLAST, ktGetContigMagnitudes, ktGetLCA, ktGetLibPath, ktGetTaxIDFromAcc, ktGetTaxInfo, ktImportBLAST, ktImportDiskUsage, ktImportEC, ktImportFCP, ktImportGalaxy, ktImportKrona, ktImportMETAREP-BLAST, ktImportMETAREP-EC, ktImportMGRAST, ktImportPhymmBL, ktImportRDP, ktImportRDPComparison, ktImportTaxonomy, ktImportText, ktImportXML, ktUpdateTaxonomy.sh, rsync, xxh128sum |
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GITHUB
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quay.io/biocontainers/bactopia-variants |
singularity registry hpc automated addition for bactopia-variants |
RNAmultifold, TMalign, bactopia-variants, cleanup-coverage.py, make_pscores.pl, mask-consensus.py, poa, sam_add_rg.pl, snippy, snippy-clean_full_aln, snippy-core, snippy-multi, snippy-vcf_extract_subs, snippy-vcf_report, snippy-vcf_to_tab, split_ref_by_bai_datasize.py, update_version.sh, vcf-annotator, snp-sites, clustalo, vt, rename, tabix++, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb, impala, makemat, megablast, samclip, any2fasta, snpEff, bamleftalign, bc, coverage_to_regions.py, dc, fasta_generate_regions.py, freebayes-parallel |
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GITHUB
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quay.io/biocontainers/bactopia |
shpc-registry automated BioContainers addition for bactopia |
amr_report, amrfinder, amrfinder_update, ariba, bactopia, bactopia-citations.py, bactopia-datasets.py, bactopia-download.py, bactopia-prepare.py, bactopia-search.py, bsdcat, bsdcpio, bsdtar, check-assembly-accession.py, check-fastqs.py, cleanup-coverage.py, conda2solv, dna_mutation, dumpsolv, executor, fasta2parts, fasta_check, fasta_extract, gff_check, gimme_taxa.py, installcheck, mamba, mamba-package, mask-consensus.py, merge-blast-json.py, mergesolv, mlst-blast.py, ncbi-genome-download, nextflow, nextflow.bak, ngd, repo2solv, select-references.py, split-coverages.py, staphopia, testsolv, conda-env, cph, fastaq, funzip, unzipsfx, zipgrep, zipinfo, FET.pl, cd-hit-clstr_2_blm8.pl, cds-mapping-stats |
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GITHUB
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quay.io/biocontainers/baczy |
singularity registry hpc automated addition for baczy |
baczy, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex, rst2xml, yte, plac_runner.py, docutils, pulptest, snakemake-bash-completion, snakemake, cbc, clp, humanfriendly, numpy-config, tabulate, jupyter-trust, jupyter, jupyter-migrate, jupyter-troubleshoot |
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GITHUB
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quay.io/biocontainers/badread |
shpc-registry automated BioContainers addition for badread |
badread, edlib-aligner, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc |
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GITHUB
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quay.io/biocontainers/baitfisher |
shpc-registry automated BioContainers addition for baitfisher |
BaitFilter, BaitFisher |
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GITHUB
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quay.io/biocontainers/bakdrive |
shpc-registry automated BioContainers addition for bakdrive |
bakdrive, httpx, isympy, cmark, pulptest, cbc, clp, glpsol, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py |
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GITHUB
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quay.io/biocontainers/bakrep-cli |
singularity registry hpc automated addition for bakrep-cli |
bakrep, idle3.13, pydoc3.13, python3.13, python3.13-config, normalizer |
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GITHUB
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quay.io/biocontainers/bakta |
shpc-registry automated BioContainers addition for bakta |
EukHighConfidenceFilter, amr_report, amrfinder, amrfinder_update, bakta, bakta_db, bakta_proteins, covels-SE, coves-SE, dna_mutation, eufindtRNA, fasta2gsi, fasta2parts, fasta_check, fasta_extract, gff_check, pilercr, sstofa, tRNAscan-SE, tRNAscan-SE.conf, trnascan-1.4, aragorn, igzip, pbunzip2, pbzcat, pbzip2, cmalign, cmbuild, cmcalibrate, cmconvert, cmemit |
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GITHUB
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quay.io/biocontainers/bali-phy |
shpc-registry automated BioContainers addition for bali-phy |
alignment-cat, alignment-chop-internal, alignment-compare, alignment-consensus, alignment-convert, alignment-distances, alignment-draw, alignment-find, alignment-find-conserved, alignment-gild, alignment-identity, alignment-indices, alignment-info, alignment-max, alignment-smc, alignment-thin, alignment-translate, alignments-diff, bali-phy, bali-phy-pkg, bali-subsample, bp-analyze, cut-range, draw-graph, draw-tree, extract-ancestors, joint-indels, joint-parsimony, mctree-mean-lengths, model_P, partitions-supported, path-graph, pickout, statreport, stats-cat, stats-merge, stats-select, summarize-ancestors, tree-mean-lengths, tree-partitions, tree-reroot, tree-tool, trees-bootstrap, trees-consensus, trees-distances, trees-pair-distances, trees-to-SRQ, chrpath, gnuplot, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config |
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GITHUB
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quay.io/biocontainers/balrog |
shpc-registry automated BioContainers addition for balrog |
balrog, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/baltic |
shpc-registry automated BioContainers addition for baltic |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc |
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GITHUB
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quay.io/biocontainers/bam-readcount |
shpc-registry automated BioContainers addition for bam-readcount |
bam-readcount, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, perl5.26.2, podselect |
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GITHUB
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quay.io/biocontainers/bam2fasta |
shpc-registry automated BioContainers addition for bam2fasta |
bam2fasta, pathos_connect, portpicker, pox, ppserver, screed, get_objgraph, undill, tqdm, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/bam2fastx |
shpc-registry automated BioContainers addition for bam2fastx |
bam2fasta, bam2fastq, bam2sam, ccs-kinetics-bystrandify, pbbamify, pbindex, pbindexdump, pbmerge, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/bam2plot |
singularity registry hpc automated addition for bam2plot |
bam2plot, checksum-profile, elastishadow, mosdepth, protoc-28.2.0, pyfastx, minimap2.py, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, annot-tsv, elasticurl, elasticurl_cpp, elastipubsub, numpy-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, gflags_completions.sh |
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GITHUB
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quay.io/biocontainers/bamaddrg |
shpc-registry automated BioContainers addition for bamaddrg |
bamaddrg |
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GITHUB
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quay.io/biocontainers/bamaligncleaner |
shpc-registry automated BioContainers addition for bamaligncleaner |
bamAlignCleaner, tqdm, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/bambamc |
shpc-registry automated BioContainers addition for bambamc |
|
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GITHUB
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quay.io/biocontainers/bamclipper |
shpc-registry automated BioContainers addition for bamclipper |
bamclipper.sh, clipprimer.pl, injectseparator.pl, parsort, perl5.32.0, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh |
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GITHUB
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quay.io/biocontainers/bamcmp |
shpc-registry automated BioContainers addition for bamcmp |
bamcmp, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/bamdash |
singularity registry hpc automated addition for bamdash |
bamdash, kaleido, mathjax-path, certutil, nspr-config, nss-config, pk12util, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/bamhash |
shpc-registry automated BioContainers addition for bamhash |
bamhash_checksum_bam, bamhash_checksum_fasta, bamhash_checksum_fastq |
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GITHUB
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quay.io/biocontainers/bamkit |
shpc-registry automated BioContainers addition for bamkit |
bamcleanheader.py, bamfilterrg.py, bamgroupreads.py, bamheadrg.py, bamlibs.py, bamtofastq.py, sectosupp, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/bamm |
shpc-registry automated BioContainers addition for bamm |
bamFlags, bamm, perl5.32.0, qualfa2fq.pl, xa2multi.pl, bwa, f2py2, f2py2.7, fasta-sanitize.pl, plot-ampliconstats, python2-config, python2.7-config |
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GITHUB
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quay.io/biocontainers/bamr |
shpc-registry automated BioContainers addition for bamr |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/bamread |
shpc-registry automated BioContainers addition for bamread |
bamread, natsort, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7 |
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GITHUB
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quay.io/biocontainers/bamscale |
shpc-registry automated BioContainers addition for bamscale |
BAMscale, htsfile, bgzip, tabix |
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GITHUB
|
quay.io/biocontainers/bamsnap |
shpc-registry automated BioContainers addition for bamsnap |
bamsnap, faidx, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, jpgicc |
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GITHUB
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quay.io/biocontainers/bamstats |
singularity registry hpc automated addition for bamstats |
bamstats |
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GITHUB
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quay.io/biocontainers/bamsurgeon |
singularity registry hpc automated addition for bamsurgeon |
addindel.py, addsnv.py, addsv.py, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, esd2esi, exonerate, exonerate-server, fasta2esd, fastaannotatecdna, fastachecksum, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasubseq, fastatranslate, fastavalidcds, ipcress |
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GITHUB
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quay.io/biocontainers/bamtocov |
shpc-registry automated BioContainers addition for bamtocov |
average-coverage.py, bamcountrefs, bamtarget, bamtocounts, bamtocov, comparecounts.py, covToWig.py, covtotarget, feat-counts.py, gff2bed.py, low-cov-multisample.py, make-target-from-bam.py, prokka-annotation-refupdate.py, strip-seq-from-bam.py, gff2bed, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/bamtools |
shpc-registry automated BioContainers addition for bamtools |
bamtools |
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GITHUB
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quay.io/biocontainers/bamutil |
shpc-registry automated BioContainers addition for bamutil |
bam |
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GITHUB
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quay.io/biocontainers/bandage |
shpc-registry automated BioContainers addition for bandage |
|
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GITHUB
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quay.io/biocontainers/banner |
shpc-registry automated BioContainers addition for banner |
banner, conv-template, from-template, py.test, pytest, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m |
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GITHUB
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quay.io/biocontainers/barcode_splitter |
shpc-registry automated BioContainers addition for barcode_splitter |
barcode_splitter, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/baredsc |
shpc-registry automated BioContainers addition for baredsc |
baredSC_1d, baredSC_2d, combineMultipleModels_1d, combineMultipleModels_2d, nc3tonc4, nc4tonc3, ncinfo, zipcmp, zipmerge, ziptool, natsort, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8 |
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GITHUB
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quay.io/biocontainers/barriers |
shpc-registry automated BioContainers addition for barriers |
barriers, crossrates.pl, fix_bar.pl, genPoHoLandscape, saddle.pl, saddle2dot.pl, saddle2gml.pl, treeplot.pl, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold |
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GITHUB
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quay.io/biocontainers/barrnap-python |
shpc-registry automated BioContainers addition for barrnap-python |
barrnap.py, barrnap, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct |
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GITHUB
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quay.io/biocontainers/barrnap |
shpc-registry automated BioContainers addition for barrnap |
barrnap, perl5.32.0, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev |
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GITHUB
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quay.io/biocontainers/barseqcount |
singularity registry hpc automated addition for barseqcount |
barseqcount, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/bart |
singularity registry hpc automated addition for bart |
bart, bart-profile, bart-update, kma, kma_index, kma_shm, kma_update, refseq_masher, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/basenji |
shpc-registry automated BioContainers addition for basenji |
akita_data.py, akita_data_read.py, akita_data_write.py, akita_predict.py, akita_sat_plot.py, akita_sat_vcf.py, akita_scd.py, akita_scd_multi.py, akita_test.py, akita_train.py, bam_cov.py, basenji_annot_chr.py, basenji_bench_classify.py, basenji_bench_gtex.py, basenji_bench_gtex_cmp.py, basenji_bench_phylop.py, basenji_bench_phylop_folds.py, basenji_cmp.py, basenji_data.py, basenji_data2.py, basenji_data_align.py, basenji_data_gene.py, basenji_data_hic_read.py, basenji_data_hic_write.py, basenji_data_read.py, basenji_data_write.py, basenji_fetch_app.py, basenji_fetch_app1.py, basenji_fetch_app2.py, basenji_fetch_norm.py, basenji_fetch_vcf.py, basenji_gtex_folds.py, basenji_hdf5_genes.py, basenji_hidden.py, basenji_map.py, basenji_map_genes.py, basenji_map_seqs.py, basenji_motifs.py, basenji_motifs_denovo.py, basenji_norm_h5.py, basenji_predict.py, basenji_predict_bed.py, basenji_predict_bed_multi.py, basenji_sad.py, basenji_sad_multi.py, basenji_sad_norm.py, basenji_sad_ref.py, basenji_sad_ref_multi.py, basenji_sad_table.py, basenji_sat_bed.py, basenji_sat_bed_multi.py, basenji_sat_folds.py, basenji_sat_plot.py, basenji_sat_plot2.py, basenji_sat_vcf.py, basenji_sed.py, basenji_sed_multi.py, basenji_sedg.py, basenji_test.py, basenji_test_folds.py, basenji_test_genes.py, basenji_test_reps.py, basenji_test_specificity.py, basenji_train.py, basenji_train1.py, basenji_train2.py, basenji_train_folds.py, basenji_train_hic.py, basenji_train_reps.py, cooltools, fits2bitmap, fitscheck, fitsdiff, fitsheader, fitsinfo, import_pb_to_tensorboard, samp_hub, save_model.py, showtable, sonnet_predict_bed.py, sonnet_sad.py, sonnet_sad_multi.py, sonnet_sat_bed.py, sonnet_sat_vcf.py, tfr_bw.py, tfr_hdf5.py, tfr_qc.py, upgrade_tf1.py, volint, wcslint, cooler, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix |
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GITHUB
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quay.io/biocontainers/basic |
shpc-registry automated BioContainers addition for basic |
BASIC.py, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, perl5.26.2 |
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GITHUB
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quay.io/biocontainers/batch_brb |
shpc-registry automated BioContainers addition for batch_brb |
accession_retrieve, adb01_check_db.py, adb02_add_alias_to_db.py, aliasdb_pipeline, alncut, alnpi, ar01_accret.py, bash, bashbug, batch_brb_functions.py, batch_brb_setup, batch_makeblastdb, del01_delete_db_entries.py, delete_db, fascodon, fascomp, fasconvert, fascut, fasfilter, fasgrep, fashead, faslen, faspaste, fasrc, fassort, fassub, fastail, fastax, fastaxsort, fastr, fasttree_pipeline, fasuniq, faswc, fasxl, ft01_extract_accessions.py, gbfalncut, gbfcut, mdb01_makeblastdb.sh, mdb02_convert_headers.py, mdb03_add_to_db.py, merge_results, or01_filter_hits.py, or02_find_orthologs.py, orthology_pipeline, show, seqkit, FastTree-2.1.10.c, FastTreeMP, muscle, FastTree, fasttree, CA.pm, cacert.pem, index-themes, fetch-extras |
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GITHUB
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quay.io/biocontainers/bats |
shpc-registry automated BioContainers addition for bats |
bats |
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GITHUB
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quay.io/biocontainers/batvi |
shpc-registry automated BioContainers addition for batvi |
call_integrations.sh, cat_sorted_sam.sh, clean_run.sh, collate.sh, collate_from_file.sh, combine_hits.pl, commandline.sh, convert_to_fastq.sh, email.sh, extract_hbv_from_fasta.sh, extract_sam_xargs.sh, extract_unmapped_and_oneside.sh, extracthbv.sh, gen_paths.sh, get_blast_hits.sh, get_reads.pl, hbvblast.sh, join_sam.sh, manualcompile.sh, relabelunbugreads.sh, search_text.sh, sort_by_name.sh, unbug.pl, unbug.sh, unbug_xarg.sh, view_xargs.sh, build.sh, picard, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns |
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GITHUB
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quay.io/biocontainers/bax2bam |
shpc-registry automated BioContainers addition for bax2bam |
bam2sam, bax2bam, pbbamify, pbindex, pbindexdump, pbmerge, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff |
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GITHUB
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quay.io/biocontainers/bayesase |
shpc-registry automated BioContainers addition for bayesase |
bwa_split_sam_seonly_2output.py, calculate_priors_ase_count_tables.py, check_aln_design_file.py, check_comparate_design_file.py, check_lost_reads.py, check_sam_present.py, check_samcomp_lost_reads.py, combine_count_tables.py, merge_comparates_generate_bayesian_headers.py, merge_priors_to_comparate.py, nbmodel_stan2.py, sam_compare_w_feature.py, summarize_sam_compare_cnts_table_1cond.py, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin, c89, c99 |
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GITHUB
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quay.io/biocontainers/bayescan |
shpc-registry automated BioContainers addition for bayescan |
bayescan2 |
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GITHUB
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quay.io/biocontainers/bayescode |
singularity registry hpc automated addition for bayescode |
attr, balsam, calibs_coevol_to_mutsel.py, esdcompat, fasta_to_ali.py, fitness_to_selcoeff.py, getfattr, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, lprodump, lrelease-pro, lupdate-pro, meshdebug, mutselomega, nodemutsel, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, plot_tree.py, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, readmutselomega, readnodemutsel, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, traits_coevol_to_mutsel.py, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, xml2-config.bak, ete3, xkbcli, db_convert, cups-config, ippeveprinter, ipptool, db_archive, db_checkpoint, db_deadlock, db_dump, db_hotbackup, db_load |
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GITHUB
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quay.io/biocontainers/bayestyper |
shpc-registry automated BioContainers addition for bayestyper |
bayesTyper, bayesTyperTools |
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GITHUB
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quay.io/biocontainers/baypass |
singularity registry hpc automated addition for baypass |
g_baypass |
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GITHUB
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quay.io/biocontainers/bazam |
shpc-registry automated BioContainers addition for bazam |
bazam, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/bbknn |
shpc-registry automated BioContainers addition for bbknn |
numba, pycc, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config |
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GITHUB
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quay.io/biocontainers/bbmap |
shpc-registry automated BioContainers addition for bbmap |
a_sample_mt.sh, addadapters.sh, addssu.sh, adjusthomopolymers.sh, alltoall.sh, analyzeaccession.sh, analyzegenes.sh, analyzesketchresults.sh, applyvariants.sh, bbcms.sh, bbcountunique.sh, bbduk.sh, bbest.sh, bbfakereads.sh, bbmap.sh, bbmapskimmer.sh, bbmask.sh, bbmerge-auto.sh, bbmerge.sh, bbnorm.sh, bbrealign.sh, bbrename.sh, bbsketch.sh, bbsplit.sh, bbsplitpairs.sh, bbstats.sh, bbversion.sh, bbwrap.sh, bloomfilter.sh, build_env_setup.sh, calcmem.sh, calctruequality.sh, callgenes.sh, callpeaks.sh, callvariants.sh, callvariants2.sh, clumpify.sh, commonkmers.sh, comparegff.sh, comparesketch.sh, comparessu.sh, comparevcf.sh, conda_build.sh, consect.sh, consensus.sh, countbarcodes.sh, countgc.sh, countsharedlines.sh, crossblock.sh, crosscontaminate.sh, cutgff.sh, cutprimers.sh, decontaminate.sh, dedupe.sh, dedupe2.sh, dedupebymapping.sh, demuxbyname.sh, diskbench.sh, estherfilter.sh, explodetree.sh, fetchproks.sh, filterassemblysummary.sh, filterbarcodes.sh, filterbycoverage.sh, filterbyname.sh, filterbysequence.sh, filterbytaxa.sh, filterbytile.sh, filterlines.sh, filterqc.sh, filtersam.sh, filtersilva.sh, filtersubs.sh, filtervcf.sh, fixgaps.sh, fungalrelease.sh, fuse.sh, gbff2gff.sh, getreads.sh, gi2ancestors.sh, gi2taxid.sh, gitable.sh, grademerge.sh, gradesam.sh, icecreamfinder.sh, icecreamgrader.sh, icecreammaker.sh, idmatrix.sh, idtree.sh, invertkey.sh, kapastats.sh, kcompress.sh, keepbestcopy.sh, khist.sh, kmercountexact.sh, kmercountmulti.sh, kmercoverage.sh, kmerfilterset.sh, kmerlimit.sh, kmerlimit2.sh, kmerposition.sh, kmutate.sh, lilypad.sh, loadreads.sh, loglog.sh, makechimeras.sh, makecontaminatedgenomes.sh, makepolymers.sh, mapPacBio.sh, matrixtocolumns.sh, mergeOTUs.sh, mergebarcodes.sh, mergepgm.sh, mergeribo.sh, mergesam.sh, mergesketch.sh, mergesorted.sh, msa.sh, mutate.sh, muxbyname.sh, partition.sh, phylip2fasta.sh, pileup.sh, plotflowcell.sh, plotgc.sh, postfilter.sh, printtime.sh, processfrag.sh, processhi-c.sh, processspeed.sh, randomgenome.sh, randomreads.sh, readlength.sh, readqc.sh, reducesilva.sh, reformat.sh, reformatpb.sh, removebadbarcodes.sh, removecatdogmousehuman.sh, removehuman.sh, removehuman2.sh, removemicrobes.sh, removesmartbell.sh, rename.sh, renameimg.sh, repair.sh, replaceheaders.sh, representative.sh, rqcfilter.sh, rqcfilter2.sh, runhmm.sh, samtoroc.sh, seal.sh, sendsketch.sh, shred.sh, shrinkaccession.sh, shuffle.sh, shuffle2.sh, sketch.sh, sketchblacklist.sh, sketchblacklist2.sh, sortbyname.sh, splitbytaxa.sh, splitnextera.sh, splitribo.sh, splitsam.sh, splitsam4way.sh, splitsam6way.sh, stats.sh, statswrapper.sh, streamsam.sh, subsketch.sh, summarizecontam.sh, summarizecoverage.sh, summarizecrossblock.sh, summarizemerge.sh, summarizequast.sh, summarizescafstats.sh, summarizeseal.sh, summarizesketch.sh, synthmda.sh, tadpipe.sh, tadpole.sh, tadwrapper.sh, taxonomy.sh, taxserver.sh, taxsize.sh, taxtree.sh, testfilesystem.sh, testformat.sh, testformat2.sh, tetramerfreq.sh, textfile.sh, translate6frames.sh, unicode2ascii.sh, unzip.sh, vcf2gff.sh, webcheck.sh |
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GITHUB
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quay.io/biocontainers/bbmapy |
singularity registry hpc automated addition for bbmapy |
bbmapy-ensure-java, bbmapy-test, generate-bbmapy-commands, markdown-it, idle3.13, pydoc3.13, python3.13, python3.13-config, pygmentize |
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GITHUB
|
quay.io/biocontainers/bbmix |
singularity registry hpc automated addition for bbmix |
qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fonttools, pyftmerge, pyftsubset, ttx, tjbench, brotli, opj_compress, opj_decompress, opj_dump |
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GITHUB
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quay.io/biocontainers/bcalm |
shpc-registry automated BioContainers addition for bcalm |
bcalm, h5cc |
|
GITHUB
|
quay.io/biocontainers/bcbio-gff |
shpc-registry automated BioContainers addition for bcbio-gff |
aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
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GITHUB
|
quay.io/biocontainers/bcbio-prioritize |
shpc-registry automated BioContainers addition for bcbio-prioritize |
bcbio-prioritize, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
|
quay.io/biocontainers/bcbio-rnaseq |
shpc-registry automated BioContainers addition for bcbio-rnaseq |
bcbio-rnaseq, pandoc-citeproc, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj |
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GITHUB
|
quay.io/biocontainers/bcbio-variation-recall |
shpc-registry automated BioContainers addition for bcbio-variation-recall |
bcbio-variation-recall, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bcbio-variation |
shpc-registry automated BioContainers addition for bcbio-variation |
bcbio-variation, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
|
quay.io/biocontainers/bcbio_monitor |
shpc-registry automated BioContainers addition for bcbio_monitor |
bcbio_monitor, flask, cxpm, sxpm, acyclic, bcomps, ccomps, circo, dijkstra, dot, dot2gxl |
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GITHUB
|
quay.io/biocontainers/bcbiogff |
shpc-registry automated BioContainers addition for bcbiogff |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/bcbreport |
shpc-registry automated BioContainers addition for bcbreport |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/bcdoc |
shpc-registry automated BioContainers addition for bcdoc |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, rst2html.py |
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GITHUB
|
quay.io/biocontainers/bcftools-gtc2vcf-plugin |
shpc-registry automated BioContainers addition for bcftools-gtc2vcf-plugin |
guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl |
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GITHUB
|
quay.io/biocontainers/bcftools-liftover-plugin |
singularity registry hpc automated addition for bcftools-liftover-plugin |
gff2gff.py, annot-tsv, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, htsfile, bgzip, tabix |
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GITHUB
|
quay.io/biocontainers/bcftools-snvphyl-plugin |
shpc-registry automated BioContainers addition for bcftools-snvphyl-plugin |
guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/bcftools |
shpc-registry automated BioContainers addition for bcftools |
bcftools, bgzip, color-chrs.pl, gff2gff.py, guess-ploidy.py, htsfile, libdeflate-gunzip, libdeflate-gzip, plot-roh.py, plot-vcfstats, run-roh.pl, tabix, vcfutils.pl |
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GITHUB
|
quay.io/biocontainers/bcgtree |
singularity registry hpc automated addition for bcgtree |
Gblocks, bash, bashbug, bcgTree.pl, concatenate_by_header.pl, extract_essential_genes.sh, mm-alignments.pl, plot_matrix.py, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, muscle, prodigal, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn, esl-seqrange |
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GITHUB
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quay.io/biocontainers/bcl2fastq-nextseq |
shpc-registry automated BioContainers addition for bcl2fastq-nextseq |
bcl_to_fastq, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc |
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GITHUB
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quay.io/biocontainers/bcool |
shpc-registry automated BioContainers addition for bcool |
bcalm, bcool, bgreat, btrim, ntcard, nthll, h5cc, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/bcov |
shpc-registry automated BioContainers addition for bcov |
bcov, glpsol |
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GITHUB
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quay.io/biocontainers/bctools |
shpc-registry automated BioContainers addition for bctools |
convert_bc_to_binary_RY.py, coords2clnt.py, datamash, extract_aln_ends.py, extract_bcs.py, merge_pcr_duplicates.py, remove_tail.py, rm_spurious_events.pl, rm_spurious_events.py, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, f2py3.6, guess-ploidy.py |
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GITHUB
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quay.io/biocontainers/bd2k-python-lib |
shpc-registry automated BioContainers addition for bd2k-python-lib |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/beacon2-import |
singularity registry hpc automated addition for beacon2-import |
beacon2-import, beacon2-search, bioblend-galaxy-tests, asadmin, bundle_image, cfadmin, cq, cwutil, cyvcf2, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier, instance_events, kill_instance, launch_instance, list_instances, lss3, mturk, pyami_sendmail, route53, s3put, sdbadmin, taskadmin, coloredlogs, humanfriendly, f2py3.6 |
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GITHUB
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quay.io/biocontainers/beacon2-ri-tools |
singularity registry hpc automated addition for beacon2-ri-tools |
beacon, bff-validator, bff2html.pl, bff2json.pl, crc32, csv2xlsx, extract_vba, hypnotoad, mojo, morbo, perl-doc, pxf2bff, vcf2bff.pl, yamlpp5-events, yamlpp5-highlight, yamlpp5-load, yamlpp5-load-dump, yamlpp5-parse-emit, pg_amcheck, pg_verifybackup, pg_checksums, tzselect, zdump, zic, oid2name, pg_receivewal, pg_resetwal, pg_waldump, vacuumlo, clusterdb, createdb, createuser, dropdb, dropuser, ecpg, initdb, pg_archivecleanup, pg_basebackup, pg_controldata, pg_ctl, pg_dump, pg_dumpall, pg_isready |
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GITHUB
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quay.io/biocontainers/beagle-lib |
shpc-registry automated BioContainers addition for beagle-lib |
cups-config, ippeveprinter, ipptool, libtoolize, libtool, jfr, jaotc, aserver, jdeprscan, jhsdb |
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GITHUB
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quay.io/biocontainers/beagle |
shpc-registry automated BioContainers addition for beagle |
beagle, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/beamspy |
shpc-registry automated BioContainers addition for beamspy |
beamspy, pyside2-lupdate, pyside2-rcc, pyside2-uic, pyside_tool.py, shiboken2, shiboken_tool.py, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, qwebengine_convert_dict |
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GITHUB
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quay.io/biocontainers/beast |
shpc-registry automated BioContainers addition for beast |
beast, beauti, loganalyser, logcombiner, treeannotator, treestat, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/beast2 |
shpc-registry automated BioContainers addition for beast2 |
applauncher, beast, beauti, densitree, loganalyser, logcombiner, packagemanager, treeannotator, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/beav |
singularity registry hpc automated addition for beav |
MitoHighConfidenceFilter, TMalign, amr_report, amrfinder, amrfinder_index, amrfinder_update, antismash, bakta, bakta_db, bakta_plot, bakta_proteins, beav, beav_db, defense-finder, dna_mutation, download-antismash-databases, fasta2parts, fasta_check, fasta_extract, gff_check, hmmalign2, hmmbuild2, hmmcalibrate2, hmmconvert2, hmmemit2, hmmfetch2, hmmindex2, hmmpfam2, hmmsearch2, integron_finder, integron_merge, integron_split, less2scss, macsyconfig, macsydata, macsyfinder, macsymerge, macsyprofile, macsysplit, pilercr, pl2bat.pl, pyrodigal, pyscss, tbl2asn-test, xsltproc_lite, make_pscores.pl, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip, compute-prior-dist, compute-uniform-priors, create-priors, dreme, dreme_xml_to_html, dreme_xml_to_txt, dust, elm2meme, fasta-center, fasta-dinucleotide-shuffle, fasta-fetch, fasta-get-markov, fasta-grep, fasta-hamming-enrich |
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GITHUB
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quay.io/biocontainers/bed2gff |
singularity registry hpc automated addition for bed2gff |
bed2gff |
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GITHUB
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quay.io/biocontainers/bed2gtf |
singularity registry hpc automated addition for bed2gtf |
bed2gtf |
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GITHUB
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quay.io/biocontainers/bedgovcf |
singularity registry hpc automated addition for bedgovcf |
bedgovcf, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/bedops |
shpc-registry automated BioContainers addition for bedops |
bedops, bedops-float128, bedops-megarow, bedops-typical, switch-BEDOPS-binary-type, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical, bam2bed_sge, bam2bed_sge-float128 |
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GITHUB
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quay.io/biocontainers/bedparse |
shpc-registry automated BioContainers addition for bedparse |
bedparse, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/bedtk |
shpc-registry automated BioContainers addition for bedtk |
bedtk |
|
GITHUB
|
quay.io/biocontainers/bedtools |
shpc-registry automated BioContainers addition for bedtools |
bedtools, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, closestBed, clusterBed |
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GITHUB
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quay.io/biocontainers/behst |
shpc-registry automated BioContainers addition for behst |
behst, behst-download-data, behst-download-data.sh, behst.orig, behst.py, chromRegionLength.r, dataframeSumAllValues.r, difference_from_first_TSS_script_mordor.r, difference_from_first_TSS_script_mordor_chrom_wide.r, download_behst_data.sh, gProfilerCall.r, gene_annotation_parser.py, gene_annotation_parser_load_pickled_files.py, hiC_parser.py, hiC_parser_load_pickle_file.py, list_of_files, plot_heatmaps.r, project.sh, project.sh.orig, pvaluesPlotGenerator.r, retrieveMinRowCol.r, script_all_heatmaps.sh, script_multi_project_run.sh, script_multi_project_run_WITHOUT_LOOP.sh, script_multi_project_run_input_parameters.sh, temp_test.sh, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, idn2, shiftBed |
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GITHUB
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quay.io/biocontainers/bel-resources |
shpc-registry automated BioContainers addition for bel-resources |
bel-resources, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/bellerophon |
shpc-registry automated BioContainers addition for bellerophon |
bellerophon, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/bellmans-gapc |
shpc-registry automated BioContainers addition for bellmans-gapc |
gapc |
|
GITHUB
|
quay.io/biocontainers/berokka |
shpc-registry automated BioContainers addition for berokka |
berokka, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml, basemlg, chi2, codeml, evolver, infinitesites |
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GITHUB
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quay.io/biocontainers/besst |
shpc-registry automated BioContainers addition for besst |
reads_to_ctg_map.py, runBESST, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/bftools |
shpc-registry automated BioContainers addition for bftools |
bf.sh, bfconvert, bioformats_package.jar, config.sh, domainlist, formatlist, ijview, mkfake, showinf, tiffcomment, xmlindent, xmlvalid, metadata_conda_debug.yaml, jpackage, cups-config, ippeveprinter, ipptool, build_env_setup.sh, conda_build.sh, jfr, aserver, jdeprscan |
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GITHUB
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quay.io/biocontainers/bgreat |
shpc-registry automated BioContainers addition for bgreat |
bgreat |
|
GITHUB
|
quay.io/biocontainers/bialign |
singularity registry hpc automated addition for bialign |
bialign.py, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, gif2rgb, gifbuild, gifclrmp, giffix, giftext, giftool |
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GITHUB
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quay.io/biocontainers/biasaway |
shpc-registry automated BioContainers addition for biasaway |
biasaway, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc, tificc |
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GITHUB
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quay.io/biocontainers/bibliospec |
shpc-registry automated BioContainers addition for bibliospec |
BlibBuild, BlibFilter, BlibSearch, BlibToMs2 |
|
GITHUB
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quay.io/biocontainers/bicseq2-norm |
shpc-registry automated BioContainers addition for bicseq2-norm |
BRS, NBICseq-norm.pl, PrepPois, PrepPoisGAM, combineFile, compRatio.R, filterCNV, normalize.R, normalizeGAM.R, plot_RC_vs_GC.R, purity.R, purityEM, random_split, refine.R, refineGAM.R, test.mgcv.installed.R, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/bicseq2-seg |
shpc-registry automated BioContainers addition for bicseq2-seg |
BICseqMulSample.pl, BICseqOneSample.pl, BICseqTwoSample.pl, EstLambdaFct, MBICseq, NBICseq-seg.pl, bootstrap, combineFile, combineSegBoostrap.R, countRead, genotype, genotype.pl, plotProfile.R, report.R, reportOneSample.R, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/bifrost |
shpc-registry automated BioContainers addition for bifrost |
Bifrost |
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GITHUB
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quay.io/biocontainers/bigscape |
singularity registry hpc automated addition for bigscape |
bigscape.py, matplotlib, FastTreeMP, FastTree, fasttree, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn, esl-seqrange, esl-seqstat, esl-sfetch, esl-shuffle, esl-ssdraw, esl-translate |
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GITHUB
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quay.io/biocontainers/bigsi |
shpc-registry automated BioContainers addition for bigsi |
bigsi, falcon-bench, falcon-print-routes, hug, humanfriendly, cygdb, cython, cythonize, db_archive, db_checkpoint, db_deadlock, db_dump, db_hotbackup, db_load |
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GITHUB
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quay.io/biocontainers/bigslice |
singularity registry hpc automated addition for bigslice |
bigslice, download_bigslice_hmmdb, vectorize_bgcs, protoc-25.3.0, numpy-config, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, protoc |
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GITHUB
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quay.io/biocontainers/bigtools |
singularity registry hpc automated addition for bigtools |
bedgraphtobigwig, bedtobigbed, bigbedinfo, bigbedtobed, bigtools, bigwigaverageoverbed, bigwiginfo, bigwigmerge, bigwigtobedgraph, bigwigvaluesoverbed |
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GITHUB
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quay.io/biocontainers/binchicken |
singularity registry hpc automated addition for binchicken |
binchicken, cmtime, eido, genl-ctrl-list, ib_acme, ibis, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, idiag-socket-details, jsondiff, jsonpatch, jsonpointer, mckey, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave, nl-link-ifindex2name, nl-link-list, nl-link-name2ifindex, nl-link-release, nl-link-set, nl-link-stats, nl-list-caches, nl-list-sockets, nl-monitor, nl-neigh-add, nl-neigh-delete, nl-neigh-list, nl-neightbl-list, nl-nh-list, nl-pktloc-lookup, nl-qdisc-add, nl-qdisc-delete, nl-qdisc-list, nl-route-add, nl-route-delete, nl-route-get, nl-route-list, nl-rule-list, nl-tctree-list, nl-util-addr, protoc-24.4.0, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, ucmatose, udaddy, udpong, io_demo, ucx_info, ucx_perftest, ucx_read_profile, mamba-package, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, conda2solv, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, bsdcat, bsdcpio, bsdtar, conda-env, cph, elasticurl, elasticurl_cpp |
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GITHUB
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quay.io/biocontainers/bindash |
shpc-registry automated BioContainers addition for bindash |
bindash |
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GITHUB
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quay.io/biocontainers/bindashtree |
singularity registry hpc automated addition for bindashtree |
bindashtree |
|
GITHUB
|
quay.io/biocontainers/binette |
singularity registry hpc automated addition for binette |
binette, checkm2, protoc-23.3.0, pyrodigal, pyfastx, import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, diamond, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, markdown_py, prodigal, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign |
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GITHUB
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quay.io/biocontainers/binlorry |
shpc-registry automated BioContainers addition for binlorry |
binlorry, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/binning_refiner |
singularity registry hpc automated addition for binning_refiner |
Binning_refiner, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/binny |
singularity registry hpc automated addition for binny |
binny, blastn_vdb, cmtime, cnitool, elastipubsub5, h5fuse.sh, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, io_demo, mantis, mckey, mksquashfs, mqtt5_app, mqtt5_canary, mqtt5canary, nltk, produce_x_platform_fuzz_corpus, protoc-23.3.0, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, run-singularity, run_x_platform_fuzz_corpus, scalar, scmp_sys_resolver, singularity, tblastn_vdb, ucmatose, ucx_info, ucx_perftest, ucx_read_profile, udaddy, udpong, unsquashfs, elasticurl, elasticurl_cpp, elastipubsub, markdown-it, bsdcat, bsdcpio, bsdtar, csv-import, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, orc-memory, orc-scan, seqkit, timezone-dump, h5delete, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh |
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GITHUB
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quay.io/biocontainers/binsanity |
shpc-registry automated BioContainers addition for binsanity |
Binsanity, Binsanity-lc, Binsanity-profile, Binsanity-refine, Binsanity-wf, Binsanity2-beta, bin_evaluation, checkm, checkm_analysis, concat, detectionCall, exactSNP, featureCounts, flattenGTF, genRandomReads, get-ids, identifyHMM, propmapped, qualityScores, removeDup, repair, simplify-fasta, subindel, subjunc, sublong, subread-align, subread-buildindex, subread-fullscan, transform-coverage-profile, txUnique, rppr, guppy, pplacer, dendropy-format, sumlabels.py, sumtrees.py, prodigal, hmmpgmd_shard, easel, esl-mixdchlet |
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GITHUB
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quay.io/biocontainers/binspreader |
singularity registry hpc automated addition for binspreader |
bin-refine |
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GITHUB
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quay.io/biocontainers/bio-ting |
shpc-registry automated BioContainers addition for bio-ting |
imseq2ting, ting, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/bio-vcf |
singularity registry hpc automated addition for bio-vcf |
bio-vcf, bundle, bundler, gdbm_dump, gdbm_load, gdbmtool, erb, gem, irb, rake, rdoc, ri, ruby |
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GITHUB
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quay.io/biocontainers/bio_assembly_refinement |
shpc-registry automated BioContainers addition for bio_assembly_refinement |
contig_break_finder, contig_cleaner, contig_overlap_trimmer, pacbio_post_process, fastaq, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer |
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GITHUB
|
quay.io/biocontainers/bio_hansel |
shpc-registry automated BioContainers addition for bio_hansel |
biohansel, hansel, cmark, pygmentize, futurize, pasteurize, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/bioawk |
shpc-registry automated BioContainers addition for bioawk |
bioawk |
|
GITHUB
|
quay.io/biocontainers/biobambam |
shpc-registry automated BioContainers addition for biobambam |
bam12auxmerge, bam12split, bam12strip, bamadapterclip, bamadapterfind, bamalignfrac, bamauxmerge, bamauxsort, bamcat, bamchecksort, bamclipreinsert, bamcollate, bamcollate2, bamdownsamplerandom, bamexplode, bamfillquery, bamfilteraux, bamfilterflags, bamfilterheader, bamfilterheader2, bamfilterlength, bamfiltermc, bamfilternames, bamfilterrefid, bamfilterrg, bamfixmateinformation, bamflagsplit, bamheap2, bamindex, bamintervalcomment, bamintervalcommenthist, bamlastfilter, bammapdist, bammarkduplicates, bammarkduplicates2, bammarkduplicatesopt, bammaskflags, bammdnm, bammerge, bamnumericalindex, bamrank, bamranksort, bamrecalculatecigar, bamrecompress, bamrefinterval, bamreset, bamscrapcount, bamseqchksum, bamsormadup, bamsort, bamsplit, bamsplitdiv, bamstreamingmarkduplicates, bamtagconversion, bamtofastq, bamvalidate, bamzztoname |
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GITHUB
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quay.io/biocontainers/biobasehttptools |
shpc-registry automated BioContainers addition for biobasehttptools |
AccessionToTaxId, AccessionToTaxId-bin, FetchSequence, FetchSequence-bin, GeneIdToGOTerms, GeneIdToGOTerms-bin, GeneIdToUniProtId, GeneIdToUniProtId-bin |
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GITHUB
|
quay.io/biocontainers/biobb_adapters |
shpc-registry automated BioContainers addition for biobb_adapters |
bagit.py, black, black-primer, blackd, jupyter-console, jupyter-dejavu, jupyter-qtconsole, prov-compare, prov-convert, send2trash, cwltool, schema-salad-doc, schema-salad-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, jupyter-bundlerextension, jupyter-nbextension |
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GITHUB
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quay.io/biocontainers/biobb_amber |
shpc-registry automated BioContainers addition for biobb_amber |
AddToBox, CartHess2FC.py, ChBox, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, MMPBSA.py.MPI, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, amber_to_pdb, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, bar_pbsa.py, bondtype, bondtype.orig, car_to_files.py, ceinutil.py, cestats, cestats_run, charmmlipid2amber.py, cpeinutil.py, cphstats, cphstats_run, cpinutil.py, cpptraj, cpptraj_randomize_ions, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gwh, hcp_getpdb, leap_add_ions, leap_build_linear_structure, leap_gen_top, leap_solvate, makeANG_RST, makeCHIR_RST, makeCSA_RST.na, makeDIP_RST.protein, makeDIST_RST, makeRIGID_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nab_build_dna_structure, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, parmed_cpinutil, parmed_hmassrepartition, pbsa, pdb4amber, pdb4amber_run, pmemd_mdrun, prepgen, process_mdout, process_mdout.perl, process_minout, process_minout.perl, py_resp.py, pymdpbsa, pytleap, reduce, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, sander_mdrun, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tinker_to_amber, tleap, ucpp, xaLeap, xleap, xparmed, cygdb, cython, cythonize, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc |
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GITHUB
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quay.io/biocontainers/biobb_analysis |
shpc-registry automated BioContainers addition for biobb_analysis |
AddToBox, CartHess2FC.py, ChBox, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, MMPBSA.py.MPI, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, bar_pbsa.py, bondtype, bondtype.orig, car_to_files.py, ceinutil.py, cestats, charmmlipid2amber.py, cpeinutil.py, cphstats, cpinutil.py, cpptraj, cpptraj_average, cpptraj_bfactor, cpptraj_convert, cpptraj_dry, cpptraj_image, cpptraj_mask, cpptraj_rgyr, cpptraj_rms, cpptraj_rmsf, cpptraj_slice, cpptraj_snapshot, cpptraj_strip, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gmx, gmx_cluster, gmx_energy, gmx_image, gmx_rgyr, gmx_rms, gmx_trjconv_str, gmx_trjconv_str_ens, gmx_trjconv_trj, gwh, hcp_getpdb, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, makeANG_RST, makeCHIR_RST, makeCSA_RST.na, makeDIP_RST.protein, makeDIST_RST, makeRIGID_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, pbsa, pdb4amber, prepgen, process_mdout.perl, process_minout.perl, py_resp.py, pymdpbsa, pytleap, reduce, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tinker_to_amber, tleap, ucpp, xaLeap, xleap, xparmed, cygdb, cython, cythonize, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc |
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GITHUB
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quay.io/biocontainers/biobb_chemistry |
shpc-registry automated BioContainers addition for biobb_chemistry |
AddToBox, CartHess2FC.py, ChBox, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, MMPBSA.py.MPI, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, acpype, acpype_params_ac, acpype_params_cns, acpype_params_gmx, acpype_params_gmx_opls, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, babel_add_hydrogens, babel_convert, babel_minimize, babel_remove_hydrogens, bar_pbsa.py, bondtype, bondtype.orig, car_to_files.py, ceinutil.py, cestats, charmmlipid2amber.py, cpeinutil.py, cphstats, cpinutil.py, cpptraj, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gwh, hcp_getpdb, makeANG_RST, makeCHIR_RST, makeCSA_RST.na, makeDIP_RST.protein, makeDIST_RST, makeRIGID_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, obfitall, obmm, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, pbsa, pdb4amber, prepgen, process_mdout.perl, process_minout.perl, py_resp.py, pymdpbsa, pytleap, reduce, reduce_add_hydrogens, reduce_remove_hydrogens, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tinker_to_amber, tleap, ucpp, xaLeap, xleap, xparmed, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop |
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GITHUB
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quay.io/biocontainers/biobb_cmip |
shpc-registry automated BioContainers addition for biobb_cmip |
avgEpsGrid, canal, check_structure, cmip, getPatch, grd2cube, gsd, mrcfile-header, mrcfile-validate, nc3tonc4, nc4tonc3, ncinfo, prepare_structure, surfnet2binaryGrid, titration, watden, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
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GITHUB
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quay.io/biocontainers/biobb_common |
shpc-registry automated BioContainers addition for biobb_common |
normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/biobb_cp2k |
singularity registry hpc automated addition for biobb_cp2k |
cp2k.sopt, cp2k.ssmp, cp2k_prep, cp2k_run, cp2k_shell.ssmp, libxsmm_gemm_generator, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, normalizer, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/biobb_dna |
shpc-registry automated BioContainers addition for biobb_dna |
AddToBox, Canal, Canion, CartHess2FC.py, ChBox, Cur+, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, average_stiffness, basepair_stiffness, biobb_canal, biobb_canion, biobb_curves, bipopulations, bondtype, bondtype.orig, canonicalag, car_to_files.py, ceinutil.py, cestats, charmmlipid2amber.py, cpeinutil.py, cphstats, cpinutil.py, cpptraj, dna_averages, dna_bimodality, dna_timeseries, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gwh, hcp_getpdb, interbpcorr, interhpcorr, interseqcorr, intrabpcorr, intrahpcorr, intraseqcorr, makeANG_RST, makeDIST_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, pbsa, pdb4amber, prepgen, process_mdout.perl, process_minout.perl, puckering, pymdpbsa, pytleap, reduce, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tleap, ucpp, xaLeap, xleap, xparmed, cygdb, cython, cythonize, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
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GITHUB
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quay.io/biocontainers/biobb_flexdyn |
singularity registry hpc automated addition for biobb_flexdyn |
NOLB, concoord_disco, concoord_dist, dist, dist.exe, evol, imc, imod_imode, imod_imove, imode_gcc, imodview, imove, nolb_nma, prody, prody_anm, disco, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/biobb_flexserv |
singularity registry hpc automated addition for biobb_flexserv |
bd, bd_run, bison, diaghess, dmd_run, dmdgoopt, flex, flex++, genpcz, lorellnma, m4, mc-eigen-mdweb.pl, mc-eigen.pl, nma_run, nmanu.pl, pca_anim_mc.pl, pcaunzip, pcazip, pcz_animate, pcz_bfactor, pcz_collectivity, pcz_evecs, pcz_hinges, pcz_info, pcz_lindemann, pcz_similarity, pcz_stiffness, pcz_unzip, pcz_zip, pczdump, yacc, aec, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff, hdp, hrepack, jpeg2hdf |
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GITHUB
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quay.io/biocontainers/biobb_godmd |
singularity registry hpc automated addition for biobb_godmd |
discrete, godmd_prep, godmd_run, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/biobb_gromacs |
singularity registry hpc automated addition for biobb_gromacs |
append_ligand, editconf, genion, genrestr, gmx, gmxselect, grompp, grompp_mdrun, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, make_ndx, mdrun, ndx2resttop, pdb2gmx, solvate, trjcat, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, normalizer, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/biobb_haddock |
singularity registry hpc automated addition for biobb_haddock |
capri_eval, clust_fcc, em_ref, flex_ref, rigid_body, sele_top, topology, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, normalizer |
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GITHUB
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quay.io/biocontainers/biobb_io |
shpc-registry automated BioContainers addition for biobb_io |
alphafold, api_binding_site, canonical_fasta, drugbank, ideal_sdf, ligand, memprotmd_sim, memprotmd_sim_list, memprotmd_sim_search, mmcif, pdb, pdb_cluster_zip, pdb_variants, structure_info, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/biobb_md |
shpc-registry automated BioContainers addition for biobb_md |
GMXRC, GMXRC.bash, GMXRC.csh, GMXRC.zsh, append_ligand, demux.pl, editconf, genion, genrestr, gmx, gmx-completion-gmx.bash, gmx-completion.bash, gmxselect, grompp, grompp_mdrun, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, make_ndx, mdrun, ndx2resttop, pdb2gmx, solvate, xplor2gmx.pl, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, normalizer, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7 |
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GITHUB
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quay.io/biocontainers/biobb_mem |
singularity registry hpc automated addition for biobb_mem |
AddToBox, CartHess2FC.py, ChBox, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, MMPBSA.py.MPI, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, ambmask, ambpdb, android_deploy.py, androiddeployqt6, ante-MMPBSA.py, antechamber, assistant6, atomtype, bar_pbsa.py, bln2gnu, bondtype, capost2gnu, car_to_files.py, ceinutil.py, cestats, charmmlipid2amber.py, cllayerinfo, cpeinutil.py, cphstats, cpinutil.py, cpptraj, cpptraj_density, deploy.py, designer6, draw_membrane2, edgembar, edgembar-WriteGraphHtml.py, edgembar-amber2dats.py, elsize, espgen, espgen.py, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gmx, grd2gnu, gsd, gwh, hcp_getpdb, hole, immers, labqpt, ldapadd, ldapcompare, ldapdelete, ldapexop, ldapmodify, ldapmodrdn, ldappasswd, ldapsearch, ldapurl, ldapvc, ldapwhoami, linguist6, lpp_assign_leaflets, makeANG_RST, makeCHIR_RST, makeCSA_RST.na, makeDIP_RST.protein, makeDIST_RST, makeRIGID_RST, make_crd_hg, make_post2gnu, make_post_map, mda_hole, mdgx, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metaobjectdump.py, metatwist, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, mrcfile-header, mrcfile-validate, ndfes, ndfes-AvgFESs.py, ndfes-CheckEquil.py, ndfes-CombineMetafiles.py, ndfes-FTSM-PrepareAnalysis.py, ndfes-FTSM-PrepareGuess.py, ndfes-FTSM-PrepareSims.py, ndfes-PrepareAmberData.py, ndfes-PrintFES.py, ndfes-PrintStringFES.py, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, pbsa, pdb4amber, pixeltool6, prepgen, process_mdout.perl, process_minout.perl, project.py, py_resp.py, pyresp_gen.py, pyside6-rcc, pyside6-uic, qdbus6, qdbusviewer6, qdistancefieldgenerator6, qdoc6, qmake6, qml.py, qml6, qmleasing6, qmlls6, qmlpreview6, qmlscene6, qplot, qpt_conv, qt6.conf, qtdiag6, qtplugininfo6, qtpy2cpp.py, quick, reduce, requirements-android.txt, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, shiboken6, shiboken_tool.py, simplepbsa, softcore_setup.py, sos_triangle, sph_process, sqm, sviol, sviol2, teLeap, test-api, tinker_to_amber, tleap, ucpp, vdwdot, vmd_triangles_to_lines, wayland-scanner, xaLeap, xleap, nc3tonc4, nc4tonc3, ncinfo, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, h5tools_test_utils, h5fuse.sh, cygdb, cython, cythonize, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch |
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GITHUB
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quay.io/biocontainers/biobb_ml |
shpc-registry automated BioContainers addition for biobb_ml |
agglomerative_clustering, agglomerative_coefficient, autoencoder_neural_network, classification_neural_network, classification_predict, clustering_predict, correlation_matrix, dbscan, decision_tree, dendrogram, drop_columns, dummy_variables, import_pb_to_tensorboard, k_means, k_means_coefficient, k_neighbors, k_neighbors_coefficient, linear_regression, logistic_regression, map_variables, neural_network_decode, neural_network_predict, oversampling, pairwise_comparison, pls_components, pls_regression, polynomial_regression, principal_component, random_forest_classifier, random_forest_regressor, recurrent_neural_network, regression_neural_network, regression_predict, resampling, scale_columns, spectral_clustering, spectral_coefficient, support_vector_machine, undersampling, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2 |
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GITHUB
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quay.io/biocontainers/biobb_model |
shpc-registry automated BioContainers addition for biobb_model |
check_structure, checking_log, fix_amides, fix_backbone, fix_chirality, fix_side_chain, mutate, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/biobb_pdb_tools |
singularity registry hpc automated addition for biobb_pdb_tools |
biobb_pdb_chain, biobb_pdb_chainxseg, biobb_pdb_delhetatm, biobb_pdb_fetch, biobb_pdb_merge, biobb_pdb_mkensemble, biobb_pdb_reres, biobb_pdb_seg, biobb_pdb_splitmodel, biobb_pdb_splitseg, biobb_pdb_tidy, biobb_pdb_tofasta, pdb_b, pdb_chain, pdb_chainbows, pdb_chainxseg, pdb_chkensemble, pdb_delchain, pdb_delelem, pdb_delhetatm, pdb_delinsertion, pdb_delres, pdb_delresname, pdb_element, pdb_fetch, pdb_fixinsert, pdb_fromcif, pdb_gap, pdb_head, pdb_intersect, pdb_keepcoord, pdb_merge, pdb_mkensemble, pdb_occ, pdb_reatom, pdb_reres, pdb_rplchain, pdb_rplresname, pdb_seg, pdb_segxchain, pdb_selaltloc, pdb_selatom, pdb_selchain, pdb_selelem, pdb_selhetatm, pdb_selmodel, pdb_selres, pdb_selresname, pdb_selseg, pdb_shiftres, pdb_sort, pdb_splitchain, pdb_splitmodel, pdb_splitseg, pdb_tidy, pdb_tocif, pdb_tofasta, pdb_uniqname, pdb_validate, pdb_wc, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, normalizer |
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GITHUB
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quay.io/biocontainers/biobb_pmx |
shpc-registry automated BioContainers addition for biobb_pmx |
pmx, pmxanalyse, pmxatom_mapping, pmxcreate_top, pmxgentop, pmxligand_hybrid, pmxmerge_ff, pmxmutate, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, futurize, pasteurize, f2py3.7, opj_compress |
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GITHUB
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quay.io/biocontainers/biobb_pytorch |
singularity registry hpc automated addition for biobb_pytorch |
apply_mdae, protoc-25.1.0, torch_shm_manager, train_mdae, torchrun, isympy, convert-caffe2-to-onnx, convert-onnx-to-caffe2, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, protoc, normalizer |
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GITHUB
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quay.io/biocontainers/biobb_remote |
singularity registry hpc automated addition for biobb_remote |
credentials, scp_service, slurm_test, ssh_command, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/biobb_structure_checking |
shpc-registry automated BioContainers addition for biobb_structure_checking |
check_structure, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/biobb_structure_manager |
shpc-registry automated BioContainers addition for biobb_structure_manager |
f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/biobb_structure_utils |
shpc-registry automated BioContainers addition for biobb_structure_utils |
cat_pdb, check_structure, closest_residues, extract_atoms, extract_chain, extract_heteroatoms, extract_model, extract_molecule, extract_residues, remove_ligand, remove_molecules, remove_pdb_water, renumber_structure, sort_gro_residues, str_check_add_hydrogens, structure_check, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/biobb_vs |
shpc-registry automated BioContainers addition for biobb_vs |
autodock_vina_run, bindingsite, box, box_residues, dpocket, extract_model_pdbqt, fpocket, fpocket_filter, fpocket_run, fpocket_select, mdpocket, tpocket, vina, vina_split, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/biobb_wf_mutations |
shpc-registry automated BioContainers addition for biobb_wf_mutations |
GMXRC, GMXRC.bash, GMXRC.csh, GMXRC.zsh, bagit.py, demux.pl, editconf, fix_side_chain, genion, genrestr, gmx, gmx-completion-gmx.bash, gmx-completion.bash, grompp, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, jupyter-console, jupyter-qtconsole, lstopo, lstopo-no-graphics, make_ndx, mdrun, mutate, ndx2resttop, pdb, pdb2gmx, pdb_cluster_zip, pdb_variants, prov-compare, prov-convert, solvate, xplor2gmx.pl, cwltool, schema-salad-doc, schema-salad-tool, g-ir-doc-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, jupyter-bundlerextension |
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GITHUB
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quay.io/biocontainers/bioblend |
shpc-registry automated BioContainers addition for bioblend |
bioblend-galaxy-tests, x86_64-conda_cos7-linux-gnu-ld, normalizer, futurize, pasteurize, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/biobloomtools |
singularity registry hpc automated addition for biobloomtools |
biobloomcategorizer, biobloommaker, biobloommicategorizer, biobloommimaker |
|
GITHUB
|
quay.io/biocontainers/biobox_add_taxid |
singularity registry hpc automated addition for biobox_add_taxid |
biobox_add_taxid.py, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/biocamlib |
singularity registry hpc automated addition for biocamlib |
FASTools, Octopus, Parallel, RC |
|
GITHUB
|
quay.io/biocontainers/biocantor |
singularity registry hpc automated addition for biocantor |
gffutils-cli, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/biocode |
singularity registry hpc automated addition for biocode |
add_gff3_locus_tags.py, add_polypeptide_to_gff3_gene_models.py, append_to_column_9_value.py, append_to_fasta_header.py, append_to_fastq_read_header.py, calculate_gene_coverage_from_assembly.py, calculate_query_coverage_by_blast.py, check_for_embedded_fasta_headers.py, check_gff_for_internal_stops.py, compare_gene_structures.py, convert_aat_btab_to_gff3.py, convert_augustus_to_gff3.py, convert_blast_btab_to_bed.py, convert_blast_btab_to_gff3.py, convert_cegma_gff_to_gff3.py, convert_cufflinks_gtf_to_gff3.py, convert_fasta_contigs_to_gff3.py, convert_fastq_to_fasta.py, convert_genbank_to_gff3.py, convert_gff3_to_bed.py, convert_gff3_to_gbk.py, convert_gff3_to_gene_association_format.py, convert_gff3_to_ncbi_tbl.py, convert_gff_to_ncbi_gff3.py, convert_glimmerHMM_gff_to_gff3.py, convert_htab_to_bed.py, convert_metagenemark_gff_to_gff3.py, convert_pasa_gff_to_models.py, convert_prodigal_to_gff3.py, convert_scipio_gff_to_gff3.py, correct_gff3_CDS_phase_column.py, create_rsem_html_table.py, create_taxonomic_profile_from_blast.py, create_taxonomy_db.py, detect_inverted_repeats.py, download_assemblies_from_genbank.py, eggnog_to_sqlite3.py, extend_genes_to_stops.py, extract_fasta_regions.py, fasta_base_content.py, fasta_simple_stats.py, fasta_size_distribution_plot.py, fastq_simple_stats.py, filter_fasta_by_abundance.py, filter_fasta_by_header_regex.py, filter_fasta_by_type.py, filter_fastq_by_N_content.py, filter_gff3_by_id_list.py, filter_uniref_by_repid.py, filter_uniref_by_taxonomy.py, get_mpilup_from_id_list.py, hmmlib_to_sqlite3.py, interleave_fastq.py, join_columnar_files.py, list_biocode.py, make_cufflinks_ids_unique.py, make_go_index.py, make_go_slim.py, make_go_slim_index.py, mark_partial_genes.py, merge_bam_files.py, merge_fasta_files_and_uniquify_ids.py, merge_masked_fasta_files.py, merge_predicted_gff3.py, prepend_to_fasta_header.py, pwiz.py, randomly_subsample_fastq.py, reformat_fasta_residue_lengths.py, remove_duplicate_features.py, remove_duplicate_sequences.py, remove_masked_gene_models.py, remove_orphaned_features.py, reorient_sequences_by_id.py, replace_gff_type_column_value.py, replace_homopolymeric_repeats_with_Ns.py, report_basic_gff_model_agreement.py, report_coverage_gaps.py, report_gff3_statistics.py, report_gff_intron_and_intergenic_stats.py, report_go_slim_counts.py, report_or_replace_nonstandard_residues.py, reverse_misordered_cds_coords.py, select_training_and_evaluation_transcripts.py, set_source_column.py, split_fasta_into_even_files.py, split_interleaved_sequence_file.py, split_isoforms_into_individual_genes.py, split_molecules_on_gaps.py, subsample_fasta.py, taxadb, tigrfam_info_to_sqlite3.py, uniprot_sprot_to_sqlite3.py, uniref_to_sqlite3.py, update_selected_column9_values.py, validate_fasta.py, validate_feature_boundaries_on_molecules.py, write_fasta_from_gff.py, igraph, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis, ndmetis, glpsol, fonttools, pyftmerge, pyftsubset, ttx, normalizer, tqdm, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/biocommons.seqrepo |
shpc-registry automated BioContainers addition for biocommons.seqrepo |
pyppeteer-install, seqrepo, sqlformat, yoyo, yoyo-migrate, coloredlogs, humanfriendly, tabulate, normalizer, tqdm, xslt-config, xsltproc, 2to3-3.9, idle3.9, pydoc3.9 |
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GITHUB
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quay.io/biocontainers/bioconda-utils |
shpc-registry automated BioContainers addition for bioconda-utils |
anaconda, binstar, bioconda-utils, boa, bsdcat, bsdcpio, bsdtar, celery, conda-build, conda-convert, conda-debug, conda-develop, conda-index, conda-inspect, conda-mambabuild, conda-metapackage, conda-render, conda-server, conda-skeleton, conda-verify, conda2solv, dumpsolv, galaxy-tool-test, installcheck, involucro, mamba, mamba-package, mergesolv, mulled-build, mulled-build-channel, mulled-build-files, mulled-build-tool, mulled-search, patchelf, pkginfo, pyjson5, repo2solv, rg, scalar, skopeo, testsolv, watchgod, conda-env, cph, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, docutils |
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GITHUB
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quay.io/biocontainers/bioconda2biocontainer |
shpc-registry automated BioContainers addition for bioconda2biocontainer |
bioconda2biocontainer, bioconda2cwldocker, biocontainers-search, normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/bioconductor-a4 |
shpc-registry automated BioContainers addition for bioconductor-a4 |
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GITHUB
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quay.io/biocontainers/bioconductor-a4base |
shpc-registry automated BioContainers addition for bioconductor-a4base |
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GITHUB
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quay.io/biocontainers/bioconductor-a4classif |
shpc-registry automated BioContainers addition for bioconductor-a4classif |
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GITHUB
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quay.io/biocontainers/bioconductor-a4core |
shpc-registry automated BioContainers addition for bioconductor-a4core |
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GITHUB
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quay.io/biocontainers/bioconductor-a4preproc |
shpc-registry automated BioContainers addition for bioconductor-a4preproc |
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GITHUB
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quay.io/biocontainers/bioconductor-a4reporting |
shpc-registry automated BioContainers addition for bioconductor-a4reporting |
|
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GITHUB
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quay.io/biocontainers/bioconductor-abadata |
shpc-registry automated BioContainers addition for bioconductor-abadata |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-abaenrichment |
shpc-registry automated BioContainers addition for bioconductor-abaenrichment |
wget, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/bioconductor-abarray |
shpc-registry automated BioContainers addition for bioconductor-abarray |
|
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GITHUB
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quay.io/biocontainers/bioconductor-abseqr |
shpc-registry automated BioContainers addition for bioconductor-abseqr |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-absseq |
shpc-registry automated BioContainers addition for bioconductor-absseq |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-acde |
shpc-registry automated BioContainers addition for bioconductor-acde |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ace |
shpc-registry automated BioContainers addition for bioconductor-ace |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
|
quay.io/biocontainers/bioconductor-acgh |
shpc-registry automated BioContainers addition for bioconductor-acgh |
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GITHUB
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quay.io/biocontainers/bioconductor-acme |
shpc-registry automated BioContainers addition for bioconductor-acme |
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GITHUB
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quay.io/biocontainers/bioconductor-adacgh2 |
shpc-registry automated BioContainers addition for bioconductor-adacgh2 |
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GITHUB
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quay.io/biocontainers/bioconductor-adam |
shpc-registry automated BioContainers addition for bioconductor-adam |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
|
quay.io/biocontainers/bioconductor-adamgui |
shpc-registry automated BioContainers addition for bioconductor-adamgui |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-adaptest |
shpc-registry automated BioContainers addition for bioconductor-adaptest |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
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GITHUB
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quay.io/biocontainers/bioconductor-adductdata |
shpc-registry automated BioContainers addition for bioconductor-adductdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-adductomicsr |
shpc-registry automated BioContainers addition for bioconductor-adductomicsr |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
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GITHUB
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quay.io/biocontainers/bioconductor-adimpute |
shpc-registry automated BioContainers addition for bioconductor-adimpute |
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GITHUB
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quay.io/biocontainers/bioconductor-adme16cod.db |
shpc-registry automated BioContainers addition for bioconductor-adme16cod.db |
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GITHUB
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quay.io/biocontainers/bioconductor-adsplit |
shpc-registry automated BioContainers addition for bioconductor-adsplit |
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GITHUB
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quay.io/biocontainers/bioconductor-adverscarial |
singularity registry hpc automated addition for bioconductor-adverscarial |
pcre2posix_test, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-affixcan |
shpc-registry automated BioContainers addition for bioconductor-affixcan |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-affxparser |
shpc-registry automated BioContainers addition for bioconductor-affxparser |
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GITHUB
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quay.io/biocontainers/bioconductor-affy |
shpc-registry automated BioContainers addition for bioconductor-affy |
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GITHUB
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quay.io/biocontainers/bioconductor-affycomp |
shpc-registry automated BioContainers addition for bioconductor-affycomp |
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GITHUB
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quay.io/biocontainers/bioconductor-affycompatible |
shpc-registry automated BioContainers addition for bioconductor-affycompatible |
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GITHUB
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quay.io/biocontainers/bioconductor-affycompdata |
shpc-registry automated BioContainers addition for bioconductor-affycompdata |
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GITHUB
|
quay.io/biocontainers/bioconductor-affycontam |
shpc-registry automated BioContainers addition for bioconductor-affycontam |
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GITHUB
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quay.io/biocontainers/bioconductor-affycoretools |
shpc-registry automated BioContainers addition for bioconductor-affycoretools |
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GITHUB
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quay.io/biocontainers/bioconductor-affydata |
shpc-registry automated BioContainers addition for bioconductor-affydata |
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GITHUB
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quay.io/biocontainers/bioconductor-affyexpress |
shpc-registry automated BioContainers addition for bioconductor-affyexpress |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
|
quay.io/biocontainers/bioconductor-affyhgu133a2expr |
shpc-registry automated BioContainers addition for bioconductor-affyhgu133a2expr |
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GITHUB
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quay.io/biocontainers/bioconductor-affyhgu133aexpr |
shpc-registry automated BioContainers addition for bioconductor-affyhgu133aexpr |
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GITHUB
|
quay.io/biocontainers/bioconductor-affyhgu133plus2expr |
shpc-registry automated BioContainers addition for bioconductor-affyhgu133plus2expr |
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GITHUB
|
quay.io/biocontainers/bioconductor-affyilm |
shpc-registry automated BioContainers addition for bioconductor-affyilm |
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GITHUB
|
quay.io/biocontainers/bioconductor-affyio |
shpc-registry automated BioContainers addition for bioconductor-affyio |
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GITHUB
|
quay.io/biocontainers/bioconductor-affylmgui |
shpc-registry automated BioContainers addition for bioconductor-affylmgui |
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GITHUB
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quay.io/biocontainers/bioconductor-affymetrixdatatestfiles |
shpc-registry automated BioContainers addition for bioconductor-affymetrixdatatestfiles |
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GITHUB
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quay.io/biocontainers/bioconductor-affymoe4302expr |
shpc-registry automated BioContainers addition for bioconductor-affymoe4302expr |
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GITHUB
|
quay.io/biocontainers/bioconductor-affypara |
shpc-registry automated BioContainers addition for bioconductor-affypara |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-affypdnn |
shpc-registry automated BioContainers addition for bioconductor-affypdnn |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-affyplm |
shpc-registry automated BioContainers addition for bioconductor-affyplm |
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GITHUB
|
quay.io/biocontainers/bioconductor-affyqcreport |
shpc-registry automated BioContainers addition for bioconductor-affyqcreport |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-affyrnadegradation |
shpc-registry automated BioContainers addition for bioconductor-affyrnadegradation |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-ag.db |
shpc-registry automated BioContainers addition for bioconductor-ag.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-agcdf |
shpc-registry automated BioContainers addition for bioconductor-agcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-agdex |
shpc-registry automated BioContainers addition for bioconductor-agdex |
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GITHUB
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quay.io/biocontainers/bioconductor-aggregatebiovar |
shpc-registry automated BioContainers addition for bioconductor-aggregatebiovar |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-agilp |
shpc-registry automated BioContainers addition for bioconductor-agilp |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-agimicrorna |
shpc-registry automated BioContainers addition for bioconductor-agimicrorna |
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GITHUB
|
quay.io/biocontainers/bioconductor-agprobe |
shpc-registry automated BioContainers addition for bioconductor-agprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-ahcytobands |
shpc-registry automated BioContainers addition for bioconductor-ahcytobands |
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GITHUB
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quay.io/biocontainers/bioconductor-ahensdbs |
shpc-registry automated BioContainers addition for bioconductor-ahensdbs |
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GITHUB
|
quay.io/biocontainers/bioconductor-ahlrbasedbs |
shpc-registry automated BioContainers addition for bioconductor-ahlrbasedbs |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-ahmassbank |
singularity registry hpc automated addition for bioconductor-ahmassbank |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ahmeshdbs |
shpc-registry automated BioContainers addition for bioconductor-ahmeshdbs |
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GITHUB
|
quay.io/biocontainers/bioconductor-ahpathbankdbs |
shpc-registry automated BioContainers addition for bioconductor-ahpathbankdbs |
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GITHUB
|
quay.io/biocontainers/bioconductor-ahpubmeddbs |
shpc-registry automated BioContainers addition for bioconductor-ahpubmeddbs |
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GITHUB
|
quay.io/biocontainers/bioconductor-ahwikipathwaysdbs |
shpc-registry automated BioContainers addition for bioconductor-ahwikipathwaysdbs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-aims |
shpc-registry automated BioContainers addition for bioconductor-aims |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-airpart |
shpc-registry automated BioContainers addition for bioconductor-airpart |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-airway |
shpc-registry automated BioContainers addition for bioconductor-airway |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.base |
singularity registry hpc automated addition for bioconductor-alabaster.base |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.bumpy |
singularity registry hpc automated addition for bioconductor-alabaster.bumpy |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.files |
singularity registry hpc automated addition for bioconductor-alabaster.files |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.mae |
singularity registry hpc automated addition for bioconductor-alabaster.mae |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.matrix |
singularity registry hpc automated addition for bioconductor-alabaster.matrix |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.ranges |
singularity registry hpc automated addition for bioconductor-alabaster.ranges |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.sce |
singularity registry hpc automated addition for bioconductor-alabaster.sce |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.schemas |
singularity registry hpc automated addition for bioconductor-alabaster.schemas |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.se |
singularity registry hpc automated addition for bioconductor-alabaster.se |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.spatial |
singularity registry hpc automated addition for bioconductor-alabaster.spatial |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, hb-info, dvipdf, eps2eps, gs, gsbj, gsdj |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.string |
singularity registry hpc automated addition for bioconductor-alabaster.string |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.vcf |
singularity registry hpc automated addition for bioconductor-alabaster.vcf |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-aldex2 |
shpc-registry automated BioContainers addition for bioconductor-aldex2 |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alevinqc |
shpc-registry automated BioContainers addition for bioconductor-alevinqc |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-all |
shpc-registry automated BioContainers addition for bioconductor-all |
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GITHUB
|
quay.io/biocontainers/bioconductor-allelicimbalance |
shpc-registry automated BioContainers addition for bioconductor-allelicimbalance |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-allenpvc |
shpc-registry automated BioContainers addition for bioconductor-allenpvc |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-allmll |
shpc-registry automated BioContainers addition for bioconductor-allmll |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-alphabeta |
shpc-registry automated BioContainers addition for bioconductor-alphabeta |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-alphamissense.v2023.hg19 |
singularity registry hpc automated addition for bioconductor-alphamissense.v2023.hg19 |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alphamissense.v2023.hg38 |
singularity registry hpc automated addition for bioconductor-alphamissense.v2023.hg38 |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alphamissenser |
singularity registry hpc automated addition for bioconductor-alphamissenser |
x86_64-conda-linux-gnu.cfg, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alpine |
shpc-registry automated BioContainers addition for bioconductor-alpine |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alpinedata |
shpc-registry automated BioContainers addition for bioconductor-alpinedata |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alps |
shpc-registry automated BioContainers addition for bioconductor-alps |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alpsnmr |
shpc-registry automated BioContainers addition for bioconductor-alpsnmr |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alsace |
shpc-registry automated BioContainers addition for bioconductor-alsace |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-altcdfenvs |
shpc-registry automated BioContainers addition for bioconductor-altcdfenvs |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-alternativesplicingevents.hg19 |
shpc-registry automated BioContainers addition for bioconductor-alternativesplicingevents.hg19 |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-alternativesplicingevents.hg38 |
shpc-registry automated BioContainers addition for bioconductor-alternativesplicingevents.hg38 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-amaretto |
shpc-registry automated BioContainers addition for bioconductor-amaretto |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-amountain |
shpc-registry automated BioContainers addition for bioconductor-amountain |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ampaffyexample |
shpc-registry automated BioContainers addition for bioconductor-ampaffyexample |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-amplican |
shpc-registry automated BioContainers addition for bioconductor-amplican |
pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ampliqueso |
shpc-registry automated BioContainers addition for bioconductor-ampliqueso |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-analysispageserver |
shpc-registry automated BioContainers addition for bioconductor-analysispageserver |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-anamir |
shpc-registry automated BioContainers addition for bioconductor-anamir |
gdalserver, pg_verify_checksums, testepsg, pg_standby, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, dap-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-anaquin |
shpc-registry automated BioContainers addition for bioconductor-anaquin |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ancombc |
shpc-registry automated BioContainers addition for bioconductor-ancombc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-aneufinder |
shpc-registry automated BioContainers addition for bioconductor-aneufinder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-aneufinderdata |
shpc-registry automated BioContainers addition for bioconductor-aneufinderdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-anf |
shpc-registry automated BioContainers addition for bioconductor-anf |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-animalcules |
shpc-registry automated BioContainers addition for bioconductor-animalcules |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-annaffy |
shpc-registry automated BioContainers addition for bioconductor-annaffy |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-annmap |
shpc-registry automated BioContainers addition for bioconductor-annmap |
my_print_defaults, mysql_config, perror |
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotate |
shpc-registry automated BioContainers addition for bioconductor-annotate |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotationdbi |
shpc-registry automated BioContainers addition for bioconductor-annotationdbi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotationfilter |
shpc-registry automated BioContainers addition for bioconductor-annotationfilter |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotationforge |
shpc-registry automated BioContainers addition for bioconductor-annotationforge |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotationfuncs |
shpc-registry automated BioContainers addition for bioconductor-annotationfuncs |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotationhub |
shpc-registry automated BioContainers addition for bioconductor-annotationhub |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotationhubdata |
shpc-registry automated BioContainers addition for bioconductor-annotationhubdata |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotationtools |
shpc-registry automated BioContainers addition for bioconductor-annotationtools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotatr |
shpc-registry automated BioContainers addition for bioconductor-annotatr |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-anopheles.db0 |
shpc-registry automated BioContainers addition for bioconductor-anopheles.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-anota |
shpc-registry automated BioContainers addition for bioconductor-anota |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-anota2seq |
shpc-registry automated BioContainers addition for bioconductor-anota2seq |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-antiprofiles |
shpc-registry automated BioContainers addition for bioconductor-antiprofiles |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-antiprofilesdata |
shpc-registry automated BioContainers addition for bioconductor-antiprofilesdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-anvil |
shpc-registry automated BioContainers addition for bioconductor-anvil |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-anvilaz |
singularity registry hpc automated addition for bioconductor-anvilaz |
x86_64-conda-linux-gnu.cfg, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-anvilbase |
singularity registry hpc automated addition for bioconductor-anvilbase |
x86_64-conda-linux-gnu.cfg, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-anvilbilling |
shpc-registry automated BioContainers addition for bioconductor-anvilbilling |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-anvilgcp |
singularity registry hpc automated addition for bioconductor-anvilgcp |
x86_64-conda-linux-gnu.cfg, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-anvilpublish |
shpc-registry automated BioContainers addition for bioconductor-anvilpublish |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-anvilworkflow |
singularity registry hpc automated addition for bioconductor-anvilworkflow |
hb-info, tjbench, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-apalyzer |
shpc-registry automated BioContainers addition for bioconductor-apalyzer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-apcomplex |
shpc-registry automated BioContainers addition for bioconductor-apcomplex |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-apeglm |
shpc-registry automated BioContainers addition for bioconductor-apeglm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-apl |
singularity registry hpc automated addition for bioconductor-apl |
geosop, geos-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-appreci8r |
shpc-registry automated BioContainers addition for bioconductor-appreci8r |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-arabidopsis.db0 |
shpc-registry automated BioContainers addition for bioconductor-arabidopsis.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-aracne.networks |
shpc-registry automated BioContainers addition for bioconductor-aracne.networks |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-aroma.light |
shpc-registry automated BioContainers addition for bioconductor-aroma.light |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-arrayexpress |
shpc-registry automated BioContainers addition for bioconductor-arrayexpress |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-arrayexpresshts |
shpc-registry automated BioContainers addition for bioconductor-arrayexpresshts |
jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/bioconductor-arraymvout |
shpc-registry automated BioContainers addition for bioconductor-arraymvout |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-arrayquality |
shpc-registry automated BioContainers addition for bioconductor-arrayquality |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-arrayqualitymetrics |
shpc-registry automated BioContainers addition for bioconductor-arrayqualitymetrics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-arraytools |
shpc-registry automated BioContainers addition for bioconductor-arraytools |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-arraytv |
shpc-registry automated BioContainers addition for bioconductor-arraytv |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-arrmdata |
shpc-registry automated BioContainers addition for bioconductor-arrmdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-arrmnormalization |
shpc-registry automated BioContainers addition for bioconductor-arrmnormalization |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-artms |
shpc-registry automated BioContainers addition for bioconductor-artms |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-asafe |
shpc-registry automated BioContainers addition for bioconductor-asafe |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-aseb |
shpc-registry automated BioContainers addition for bioconductor-aseb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-asgsca |
shpc-registry automated BioContainers addition for bioconductor-asgsca |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ashkenazimsonchr21 |
shpc-registry automated BioContainers addition for bioconductor-ashkenazimsonchr21 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-asics |
shpc-registry automated BioContainers addition for bioconductor-asics |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-asicsdata |
shpc-registry automated BioContainers addition for bioconductor-asicsdata |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-aspediafi |
shpc-registry automated BioContainers addition for bioconductor-aspediafi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-aspli |
shpc-registry automated BioContainers addition for bioconductor-aspli |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-assessorf |
shpc-registry automated BioContainers addition for bioconductor-assessorf |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-assessorfdata |
shpc-registry automated BioContainers addition for bioconductor-assessorfdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-asset |
shpc-registry automated BioContainers addition for bioconductor-asset |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-assign |
shpc-registry automated BioContainers addition for bioconductor-assign |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-assorthead |
singularity registry hpc automated addition for bioconductor-assorthead |
x86_64-conda-linux-gnu.cfg, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-asurat |
singularity registry hpc automated addition for bioconductor-asurat |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ataccogaps |
singularity registry hpc automated addition for bioconductor-ataccogaps |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, pandoc, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-atacseqqc |
shpc-registry automated BioContainers addition for bioconductor-atacseqqc |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-atacseqtfea |
singularity registry hpc automated addition for bioconductor-atacseqtfea |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-atena |
shpc-registry automated BioContainers addition for bioconductor-atena |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ath1121501.db |
shpc-registry automated BioContainers addition for bioconductor-ath1121501.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ath1121501cdf |
shpc-registry automated BioContainers addition for bioconductor-ath1121501cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ath1121501frmavecs |
singularity registry hpc automated addition for bioconductor-ath1121501frmavecs |
x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ath1121501probe |
shpc-registry automated BioContainers addition for bioconductor-ath1121501probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-atlasrdf |
shpc-registry automated BioContainers addition for bioconductor-atlasrdf |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-atsnp |
shpc-registry automated BioContainers addition for bioconductor-atsnp |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-attract |
shpc-registry automated BioContainers addition for bioconductor-attract |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-aucell |
shpc-registry automated BioContainers addition for bioconductor-aucell |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-autonomics |
shpc-registry automated BioContainers addition for bioconductor-autonomics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-autotuner |
shpc-registry automated BioContainers addition for bioconductor-autotuner |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-awfisher |
shpc-registry automated BioContainers addition for bioconductor-awfisher |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-awst |
shpc-registry automated BioContainers addition for bioconductor-awst |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-baalchip |
shpc-registry automated BioContainers addition for bioconductor-baalchip |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bac |
shpc-registry automated BioContainers addition for bioconductor-bac |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bacon |
shpc-registry automated BioContainers addition for bioconductor-bacon |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bader |
shpc-registry automated BioContainers addition for bioconductor-bader |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-badregionfinder |
shpc-registry automated BioContainers addition for bioconductor-badregionfinder |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bags |
shpc-registry automated BioContainers addition for bioconductor-bags |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ballgown |
shpc-registry automated BioContainers addition for bioconductor-ballgown |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bambu |
shpc-registry automated BioContainers addition for bioconductor-bambu |
xgboost |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bamsignals |
shpc-registry automated BioContainers addition for bioconductor-bamsignals |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bandits |
shpc-registry automated BioContainers addition for bioconductor-bandits |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bandle |
singularity registry hpc automated addition for bioconductor-bandle |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff, hdp, hrepack, jpeg2hdf, paltohdf |
|
GITHUB
|
quay.io/biocontainers/bioconductor-banocc |
shpc-registry automated BioContainers addition for bioconductor-banocc |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-barcodetrackr |
shpc-registry automated BioContainers addition for bioconductor-barcodetrackr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-barley1cdf |
shpc-registry automated BioContainers addition for bioconductor-barley1cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-barley1probe |
shpc-registry automated BioContainers addition for bioconductor-barley1probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-basecallqc |
shpc-registry automated BioContainers addition for bioconductor-basecallqc |
pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-basespacer |
shpc-registry automated BioContainers addition for bioconductor-basespacer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-basic4cseq |
shpc-registry automated BioContainers addition for bioconductor-basic4cseq |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-basics |
shpc-registry automated BioContainers addition for bioconductor-basics |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-basicstan |
singularity registry hpc automated addition for bioconductor-basicstan |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-basicstarrseq |
shpc-registry automated BioContainers addition for bioconductor-basicstarrseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-basilisk |
shpc-registry automated BioContainers addition for bioconductor-basilisk |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-basilisk.utils |
shpc-registry automated BioContainers addition for bioconductor-basilisk.utils |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-batchelor |
shpc-registry automated BioContainers addition for bioconductor-batchelor |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-batchqc |
shpc-registry automated BioContainers addition for bioconductor-batchqc |
pandoc-citeproc, pandoc, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bayesknockdown |
shpc-registry automated BioContainers addition for bioconductor-bayesknockdown |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bayespeak |
shpc-registry automated BioContainers addition for bioconductor-bayespeak |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bayesspace |
shpc-registry automated BioContainers addition for bioconductor-bayesspace |
xgboost, glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-baynorm |
shpc-registry automated BioContainers addition for bioconductor-baynorm |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bayseq |
shpc-registry automated BioContainers addition for bioconductor-bayseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bbcanalyzer |
shpc-registry automated BioContainers addition for bioconductor-bbcanalyzer |
my_print_defaults, mysql_config, perror, wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bcellviper |
shpc-registry automated BioContainers addition for bioconductor-bcellviper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bcrank |
shpc-registry automated BioContainers addition for bioconductor-bcrank |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bcseq |
shpc-registry automated BioContainers addition for bioconductor-bcseq |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bdmmacorrect |
shpc-registry automated BioContainers addition for bioconductor-bdmmacorrect |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-beachmat.hdf5 |
singularity registry hpc automated addition for bioconductor-beachmat.hdf5 |
pcre2posix_test, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-beachmat |
shpc-registry automated BioContainers addition for bioconductor-beachmat |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-beadarray |
shpc-registry automated BioContainers addition for bioconductor-beadarray |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-beadarrayexampledata |
shpc-registry automated BioContainers addition for bioconductor-beadarrayexampledata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-beadarraysnp |
shpc-registry automated BioContainers addition for bioconductor-beadarraysnp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-beadarrayusecases |
shpc-registry automated BioContainers addition for bioconductor-beadarrayusecases |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-beaddatapackr |
shpc-registry automated BioContainers addition for bioconductor-beaddatapackr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-beadsorted.saliva.epic |
shpc-registry automated BioContainers addition for bioconductor-beadsorted.saliva.epic |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bearscc |
shpc-registry automated BioContainers addition for bioconductor-bearscc |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-beat |
shpc-registry automated BioContainers addition for bioconductor-beat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-beclear |
shpc-registry automated BioContainers addition for bioconductor-beclear |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-beer |
singularity registry hpc automated addition for bioconductor-beer |
jags, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-benchdamic |
shpc-registry automated BioContainers addition for bioconductor-benchdamic |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-benchmarkfdrdata2019 |
shpc-registry automated BioContainers addition for bioconductor-benchmarkfdrdata2019 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-beta7 |
shpc-registry automated BioContainers addition for bioconductor-beta7 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bettr |
singularity registry hpc automated addition for bioconductor-bettr |
pandoc-lua, x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, pandoc-server, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bg2 |
singularity registry hpc automated addition for bioconductor-bg2 |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bgafun |
shpc-registry automated BioContainers addition for bioconductor-bgafun |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bgeecall |
shpc-registry automated BioContainers addition for bioconductor-bgeecall |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bgeedb |
shpc-registry automated BioContainers addition for bioconductor-bgeedb |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bgmix |
shpc-registry automated BioContainers addition for bioconductor-bgmix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bgx |
shpc-registry automated BioContainers addition for bioconductor-bgx |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bhc |
shpc-registry automated BioContainers addition for bioconductor-bhc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bicare |
shpc-registry automated BioContainers addition for bioconductor-bicare |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bifet |
shpc-registry automated BioContainers addition for bioconductor-bifet |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biggr |
shpc-registry automated BioContainers addition for bioconductor-biggr |
diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bigmelon |
shpc-registry automated BioContainers addition for bioconductor-bigmelon |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bigmemoryextras |
shpc-registry automated BioContainers addition for bioconductor-bigmemoryextras |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bigpint |
shpc-registry automated BioContainers addition for bioconductor-bigpint |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bindingsitefinder |
shpc-registry automated BioContainers addition for bioconductor-bindingsitefinder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioassayr |
shpc-registry automated BioContainers addition for bioconductor-bioassayr |
rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biobase |
shpc-registry automated BioContainers addition for bioconductor-biobase |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biobroom |
shpc-registry automated BioContainers addition for bioconductor-biobroom |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biobtreer |
shpc-registry automated BioContainers addition for bioconductor-biobtreer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocancer |
shpc-registry automated BioContainers addition for bioconductor-biocancer |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocartaimage |
singularity registry hpc automated addition for bioconductor-biocartaimage |
pcre2posix_test, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, display, identify, import, magick, magick-script, mogrify, montage, convert, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocbaseutils |
singularity registry hpc automated addition for bioconductor-biocbaseutils |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocbook |
singularity registry hpc automated addition for bioconductor-biocbook |
deno, esbuild, quarto, quarto.js, sass, git2, pcre2posix_test, hb-info, tjbench, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioccasestudies |
shpc-registry automated BioContainers addition for bioconductor-bioccasestudies |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioccheck |
shpc-registry automated BioContainers addition for bioconductor-bioccheck |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocdockermanager |
shpc-registry automated BioContainers addition for bioconductor-biocdockermanager |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocfhir |
singularity registry hpc automated addition for bioconductor-biocfhir |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocfilecache |
shpc-registry automated BioContainers addition for bioconductor-biocfilecache |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocgenerics |
shpc-registry automated BioContainers addition for bioconductor-biocgenerics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocgraph |
shpc-registry automated BioContainers addition for bioconductor-biocgraph |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biochail |
singularity registry hpc automated addition for bioconductor-biochail |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biochubsshiny |
singularity registry hpc automated addition for bioconductor-biochubsshiny |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocinstaller |
shpc-registry automated BioContainers addition for bioconductor-biocinstaller |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocio |
shpc-registry automated BioContainers addition for bioconductor-biocio |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocneighbors |
shpc-registry automated BioContainers addition for bioconductor-biocneighbors |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioconcotk |
shpc-registry automated BioContainers addition for bioconductor-bioconcotk |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocor |
shpc-registry automated BioContainers addition for bioconductor-biocor |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocparallel |
shpc-registry automated BioContainers addition for bioconductor-biocparallel |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocpkgtools |
shpc-registry automated BioContainers addition for bioconductor-biocpkgtools |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocroxytest |
singularity registry hpc automated addition for bioconductor-biocroxytest |
x86_64-conda-linux-gnu.cfg, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocset |
shpc-registry automated BioContainers addition for bioconductor-biocset |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocsingular |
shpc-registry automated BioContainers addition for bioconductor-biocsingular |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocsklearn |
shpc-registry automated BioContainers addition for bioconductor-biocsklearn |
f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, h5clear |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocstyle |
shpc-registry automated BioContainers addition for bioconductor-biocstyle |
pandoc-citeproc, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocthis |
shpc-registry automated BioContainers addition for bioconductor-biocthis |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocversion |
shpc-registry automated BioContainers addition for bioconductor-biocversion |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocviews |
shpc-registry automated BioContainers addition for bioconductor-biocviews |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocworkflowtools |
shpc-registry automated BioContainers addition for bioconductor-biocworkflowtools |
pandoc-citeproc, pandoc, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodb |
shpc-registry automated BioContainers addition for bioconductor-biodb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbchebi |
shpc-registry automated BioContainers addition for bioconductor-biodbchebi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbexpasy |
singularity registry hpc automated addition for bioconductor-biodbexpasy |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbhmdb |
shpc-registry automated BioContainers addition for bioconductor-biodbhmdb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbkegg |
shpc-registry automated BioContainers addition for bioconductor-biodbkegg |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodblipidmaps |
shpc-registry automated BioContainers addition for bioconductor-biodblipidmaps |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbmirbase |
singularity registry hpc automated addition for bioconductor-biodbmirbase |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbncbi |
singularity registry hpc automated addition for bioconductor-biodbncbi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbnci |
singularity registry hpc automated addition for bioconductor-biodbnci |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbuniprot |
shpc-registry automated BioContainers addition for bioconductor-biodbuniprot |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodist |
shpc-registry automated BioContainers addition for bioconductor-biodist |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioga |
singularity registry hpc automated addition for bioconductor-bioga |
cllayerinfo, dec265, protoc-28.2.0, wayland-scanner, vpxdec, vpxenc, x265, ffmpeg, ffprobe, h264dec, h264enc, x264, rav1e, pandoc-lua, SvtAv1EncApp, dav1d, aomdec, aomenc, x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, pandoc-server, lame, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioimagedbs |
shpc-registry automated BioContainers addition for bioconductor-bioimagedbs |
SvtAv1DecApp, SvtAv1EncApp, aomdec, aomenc, asn1Coding, asn1Decoding, asn1Parser, ffmpeg, ffprobe, h264dec, h264enc, lame, p11-kit, p11tool, trust, vpxdec, vpxenc, x264, x265, pandoc-server, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biomart |
shpc-registry automated BioContainers addition for bioconductor-biomart |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biomartgogenesets |
singularity registry hpc automated addition for bioconductor-biomartgogenesets |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biomformat |
shpc-registry automated BioContainers addition for bioconductor-biomformat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biomm |
shpc-registry automated BioContainers addition for bioconductor-biomm |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biomvcclass |
shpc-registry automated BioContainers addition for bioconductor-biomvcclass |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biomvrcns |
shpc-registry automated BioContainers addition for bioconductor-biomvrcns |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bionar |
singularity registry hpc automated addition for bioconductor-bionar |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bionero |
shpc-registry automated BioContainers addition for bioconductor-bionero |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bionet |
shpc-registry automated BioContainers addition for bioconductor-bionet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bionetstat |
shpc-registry automated BioContainers addition for bioconductor-bionetstat |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioplex |
shpc-registry automated BioContainers addition for bioconductor-bioplex |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioqc |
shpc-registry automated BioContainers addition for bioconductor-bioqc |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioseqclass |
shpc-registry automated BioContainers addition for bioconductor-bioseqclass |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biosigner |
shpc-registry automated BioContainers addition for bioconductor-biosigner |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biostrings |
shpc-registry automated BioContainers addition for bioconductor-biostrings |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biosvd |
shpc-registry automated BioContainers addition for bioconductor-biosvd |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biotip |
shpc-registry automated BioContainers addition for bioconductor-biotip |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biotmle |
shpc-registry automated BioContainers addition for bioconductor-biotmle |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biotmledata |
shpc-registry automated BioContainers addition for bioconductor-biotmledata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biovizbase |
shpc-registry automated BioContainers addition for bioconductor-biovizbase |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-birewire |
shpc-registry automated BioContainers addition for bioconductor-birewire |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-birta |
shpc-registry automated BioContainers addition for bioconductor-birta |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-birte |
shpc-registry automated BioContainers addition for bioconductor-birte |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biscuiteer |
shpc-registry automated BioContainers addition for bioconductor-biscuiteer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biscuiteerdata |
shpc-registry automated BioContainers addition for bioconductor-biscuiteerdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biseq |
shpc-registry automated BioContainers addition for bioconductor-biseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bitseq |
shpc-registry automated BioContainers addition for bioconductor-bitseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-blacksheepr |
shpc-registry automated BioContainers addition for bioconductor-blacksheepr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bladderbatch |
shpc-registry automated BioContainers addition for bioconductor-bladderbatch |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-blima |
shpc-registry automated BioContainers addition for bioconductor-blima |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-blimatestingdata |
shpc-registry automated BioContainers addition for bioconductor-blimatestingdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-blma |
shpc-registry automated BioContainers addition for bioconductor-blma |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bloodcancermultiomics2017 |
shpc-registry automated BioContainers addition for bioconductor-bloodcancermultiomics2017 |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bloodgen3module |
shpc-registry automated BioContainers addition for bioconductor-bloodgen3module |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bluster |
shpc-registry automated BioContainers addition for bioconductor-bluster |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bnbc |
shpc-registry automated BioContainers addition for bioconductor-bnbc |
mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, mpifort, mpic++, mpicc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bnem |
shpc-registry automated BioContainers addition for bioconductor-bnem |
diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bobafit |
singularity registry hpc automated addition for bioconductor-bobafit |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bodymaprat |
shpc-registry automated BioContainers addition for bioconductor-bodymaprat |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-borealis |
singularity registry hpc automated addition for bioconductor-borealis |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bovine.db |
shpc-registry automated BioContainers addition for bioconductor-bovine.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bovine.db0 |
shpc-registry automated BioContainers addition for bioconductor-bovine.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bovinecdf |
shpc-registry automated BioContainers addition for bioconductor-bovinecdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bovineprobe |
shpc-registry automated BioContainers addition for bioconductor-bovineprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bprmeth |
shpc-registry automated BioContainers addition for bioconductor-bprmeth |
pandoc-citeproc, pandoc, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-brain |
shpc-registry automated BioContainers addition for bioconductor-brain |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-brainflowprobes |
shpc-registry automated BioContainers addition for bioconductor-brainflowprobes |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-brainimager |
shpc-registry automated BioContainers addition for bioconductor-brainimager |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-brainimagerdata |
shpc-registry automated BioContainers addition for bioconductor-brainimagerdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-brainsaber |
shpc-registry automated BioContainers addition for bioconductor-brainsaber |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-brainstars |
shpc-registry automated BioContainers addition for bioconductor-brainstars |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-branchpointer |
shpc-registry automated BioContainers addition for bioconductor-branchpointer |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-breakpointr |
shpc-registry automated BioContainers addition for bioconductor-breakpointr |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-breakpointrdata |
shpc-registry automated BioContainers addition for bioconductor-breakpointrdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-breastcancermainz |
shpc-registry automated BioContainers addition for bioconductor-breastcancermainz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-breastcancernki |
shpc-registry automated BioContainers addition for bioconductor-breastcancernki |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-breastcancertransbig |
shpc-registry automated BioContainers addition for bioconductor-breastcancertransbig |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-breastcancerunt |
shpc-registry automated BioContainers addition for bioconductor-breastcancerunt |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-breastcancerupp |
shpc-registry automated BioContainers addition for bioconductor-breastcancerupp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-breastcancervdx |
shpc-registry automated BioContainers addition for bioconductor-breastcancervdx |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-brendadb |
shpc-registry automated BioContainers addition for bioconductor-brendadb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-brgedata |
shpc-registry automated BioContainers addition for bioconductor-brgedata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-brgenomics |
shpc-registry automated BioContainers addition for bioconductor-brgenomics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bridge |
shpc-registry automated BioContainers addition for bioconductor-bridge |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bridgedbr |
shpc-registry automated BioContainers addition for bioconductor-bridgedbr |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-broadseq |
singularity registry hpc automated addition for bioconductor-broadseq |
pandoc-lua, x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, pandoc-server, numpy-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bronchialil13 |
shpc-registry automated BioContainers addition for bioconductor-bronchialil13 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-browserviz |
shpc-registry automated BioContainers addition for bioconductor-browserviz |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-browservizdemo |
shpc-registry automated BioContainers addition for bioconductor-browservizdemo |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bsgenome |
shpc-registry automated BioContainers addition for bioconductor-bsgenome |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bsseq |
shpc-registry automated BioContainers addition for bioconductor-bsseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bsseqdata |
shpc-registry automated BioContainers addition for bioconductor-bsseqdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bsubtiliscdf |
shpc-registry automated BioContainers addition for bioconductor-bsubtiliscdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bsubtilisprobe |
shpc-registry automated BioContainers addition for bioconductor-bsubtilisprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bubbletree |
shpc-registry automated BioContainers addition for bioconductor-bubbletree |
pandoc-citeproc, pandoc, wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bufferedmatrix |
shpc-registry automated BioContainers addition for bioconductor-bufferedmatrix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bufferedmatrixmethods |
shpc-registry automated BioContainers addition for bioconductor-bufferedmatrixmethods |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bugphyzz |
singularity registry hpc automated addition for bioconductor-bugphyzz |
x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bugsigdbr |
shpc-registry automated BioContainers addition for bioconductor-bugsigdbr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bumhmm |
shpc-registry automated BioContainers addition for bioconductor-bumhmm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bumphunter |
shpc-registry automated BioContainers addition for bioconductor-bumphunter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bumpymatrix |
shpc-registry automated BioContainers addition for bioconductor-bumpymatrix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bus |
shpc-registry automated BioContainers addition for bioconductor-bus |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-buscorrect |
shpc-registry automated BioContainers addition for bioconductor-buscorrect |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-busparse |
shpc-registry automated BioContainers addition for bioconductor-busparse |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-busseq |
shpc-registry automated BioContainers addition for bioconductor-busseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cadd.v1.6.hg19 |
singularity registry hpc automated addition for bioconductor-cadd.v1.6.hg19 |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cadd.v1.6.hg38 |
singularity registry hpc automated addition for bioconductor-cadd.v1.6.hg38 |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cadra |
singularity registry hpc automated addition for bioconductor-cadra |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-caen |
shpc-registry automated BioContainers addition for bioconductor-caen |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cafe |
shpc-registry automated BioContainers addition for bioconductor-cafe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cagefightr |
shpc-registry automated BioContainers addition for bioconductor-cagefightr |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cageminer |
shpc-registry automated BioContainers addition for bioconductor-cageminer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cager |
shpc-registry automated BioContainers addition for bioconductor-cager |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-calib |
shpc-registry automated BioContainers addition for bioconductor-calib |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-calm |
shpc-registry automated BioContainers addition for bioconductor-calm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-camera |
shpc-registry automated BioContainers addition for bioconductor-camera |
zipcmp, zipmerge, ziptool, gif2hdf, glpsol, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-camthc |
shpc-registry automated BioContainers addition for bioconductor-camthc |
extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/bioconductor-camutqc |
singularity registry hpc automated addition for bioconductor-camutqc |
pandoc-lua, x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, pandoc-server, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cancerclass |
shpc-registry automated BioContainers addition for bioconductor-cancerclass |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cancerdata |
shpc-registry automated BioContainers addition for bioconductor-cancerdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cancerinsilico |
shpc-registry automated BioContainers addition for bioconductor-cancerinsilico |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cancermutationanalysis |
shpc-registry automated BioContainers addition for bioconductor-cancermutationanalysis |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cancersubtypes |
shpc-registry automated BioContainers addition for bioconductor-cancersubtypes |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cand |
shpc-registry automated BioContainers addition for bioconductor-cand |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-canine.db |
shpc-registry automated BioContainers addition for bioconductor-canine.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-canine.db0 |
shpc-registry automated BioContainers addition for bioconductor-canine.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-canine2.db |
shpc-registry automated BioContainers addition for bioconductor-canine2.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-canine2cdf |
shpc-registry automated BioContainers addition for bioconductor-canine2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-canine2probe |
shpc-registry automated BioContainers addition for bioconductor-canine2probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-caninecdf |
shpc-registry automated BioContainers addition for bioconductor-caninecdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-canineprobe |
shpc-registry automated BioContainers addition for bioconductor-canineprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-caomicsv |
shpc-registry automated BioContainers addition for bioconductor-caomicsv |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cardelino |
singularity registry hpc automated addition for bioconductor-cardelino |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cardinal |
shpc-registry automated BioContainers addition for bioconductor-cardinal |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cardinalio |
singularity registry hpc automated addition for bioconductor-cardinalio |
pcre2posix_test, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cardinalworkflows |
shpc-registry automated BioContainers addition for bioconductor-cardinalworkflows |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-carnival |
shpc-registry automated BioContainers addition for bioconductor-carnival |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-casper |
shpc-registry automated BioContainers addition for bioconductor-casper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-catalyst |
shpc-registry automated BioContainers addition for bioconductor-catalyst |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-category |
shpc-registry automated BioContainers addition for bioconductor-category |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-categorycompare |
shpc-registry automated BioContainers addition for bioconductor-categorycompare |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage |
|
GITHUB
|
quay.io/biocontainers/bioconductor-causalr |
shpc-registry automated BioContainers addition for bioconductor-causalr |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cbaf |
shpc-registry automated BioContainers addition for bioconductor-cbaf |
extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cbea |
singularity registry hpc automated addition for bioconductor-cbea |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cbioportaldata |
shpc-registry automated BioContainers addition for bioconductor-cbioportaldata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cbnplot |
singularity registry hpc automated addition for bioconductor-cbnplot |
hb-info, tjbench, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cbpmanager |
shpc-registry automated BioContainers addition for bioconductor-cbpmanager |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccdata |
shpc-registry automated BioContainers addition for bioconductor-ccdata |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccfindr |
shpc-registry automated BioContainers addition for bioconductor-ccfindr |
aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info, opal_wrapper, orte-clean, orte-info, orte-server |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccimpute |
singularity registry hpc automated addition for bioconductor-ccimpute |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccl4 |
shpc-registry automated BioContainers addition for bioconductor-ccl4 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccmap |
shpc-registry automated BioContainers addition for bioconductor-ccmap |
xgboost, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccplotr |
singularity registry hpc automated addition for bioconductor-ccplotr |
pcre2posix_test, hb-info, glpsol, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccpromise |
shpc-registry automated BioContainers addition for bioconductor-ccpromise |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccrepe |
shpc-registry automated BioContainers addition for bioconductor-ccrepe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cctutorial |
shpc-registry automated BioContainers addition for bioconductor-cctutorial |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cdi |
singularity registry hpc automated addition for bioconductor-cdi |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celaref |
shpc-registry automated BioContainers addition for bioconductor-celaref |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celarefdata |
shpc-registry automated BioContainers addition for bioconductor-celarefdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celda |
shpc-registry automated BioContainers addition for bioconductor-celda |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celegans.db |
shpc-registry automated BioContainers addition for bioconductor-celegans.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celeganscdf |
shpc-registry automated BioContainers addition for bioconductor-celeganscdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-celegansprobe |
shpc-registry automated BioContainers addition for bioconductor-celegansprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellarepertorium |
shpc-registry automated BioContainers addition for bioconductor-cellarepertorium |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellbarcode |
shpc-registry automated BioContainers addition for bioconductor-cellbarcode |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellbaser |
shpc-registry automated BioContainers addition for bioconductor-cellbaser |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellbench |
shpc-registry automated BioContainers addition for bioconductor-cellbench |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celldex |
shpc-registry automated BioContainers addition for bioconductor-celldex |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellgrowth |
shpc-registry automated BioContainers addition for bioconductor-cellgrowth |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellhts2 |
shpc-registry automated BioContainers addition for bioconductor-cellhts2 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellid |
shpc-registry automated BioContainers addition for bioconductor-cellid |
geosop, geos-config, glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellity |
shpc-registry automated BioContainers addition for bioconductor-cellity |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellmapper |
shpc-registry automated BioContainers addition for bioconductor-cellmapper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellmapperdata |
shpc-registry automated BioContainers addition for bioconductor-cellmapperdata |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellmigration |
shpc-registry automated BioContainers addition for bioconductor-cellmigration |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellmixs |
shpc-registry automated BioContainers addition for bioconductor-cellmixs |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellnoptr |
shpc-registry automated BioContainers addition for bioconductor-cellnoptr |
diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellscape |
shpc-registry automated BioContainers addition for bioconductor-cellscape |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellscore |
shpc-registry automated BioContainers addition for bioconductor-cellscore |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celltrails |
shpc-registry automated BioContainers addition for bioconductor-celltrails |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celltree |
shpc-registry automated BioContainers addition for bioconductor-celltree |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellxgenedp |
singularity registry hpc automated addition for bioconductor-cellxgenedp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cemitool |
shpc-registry automated BioContainers addition for bioconductor-cemitool |
pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-censcyt |
shpc-registry automated BioContainers addition for bioconductor-censcyt |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cepo |
shpc-registry automated BioContainers addition for bioconductor-cepo |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cernanetsim |
shpc-registry automated BioContainers addition for bioconductor-cernanetsim |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cetf |
shpc-registry automated BioContainers addition for bioconductor-cetf |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, jpackage, curve_keygen, cups-config, ippeveprinter, ipptool, glpsol, f2py3.10 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ceu1kg |
shpc-registry automated BioContainers addition for bioconductor-ceu1kg |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ceu1kgv |
shpc-registry automated BioContainers addition for bioconductor-ceu1kgv |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ceuhm3 |
shpc-registry automated BioContainers addition for bioconductor-ceuhm3 |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cexor |
shpc-registry automated BioContainers addition for bioconductor-cexor |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cfassay |
shpc-registry automated BioContainers addition for bioconductor-cfassay |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cfdnakit |
singularity registry hpc automated addition for bioconductor-cfdnakit |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cfdnapro |
shpc-registry automated BioContainers addition for bioconductor-cfdnapro |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cftools |
singularity registry hpc automated addition for bioconductor-cftools |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cftoolsdata |
singularity registry hpc automated addition for bioconductor-cftoolsdata |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cgdv17 |
shpc-registry automated BioContainers addition for bioconductor-cgdv17 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cgen |
shpc-registry automated BioContainers addition for bioconductor-cgen |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cghbase |
shpc-registry automated BioContainers addition for bioconductor-cghbase |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cghcall |
shpc-registry automated BioContainers addition for bioconductor-cghcall |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cghmcr |
shpc-registry automated BioContainers addition for bioconductor-cghmcr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cghnormaliter |
shpc-registry automated BioContainers addition for bioconductor-cghnormaliter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cghregions |
shpc-registry automated BioContainers addition for bioconductor-cghregions |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-champ |
shpc-registry automated BioContainers addition for bioconductor-champ |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-champdata |
shpc-registry automated BioContainers addition for bioconductor-champdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-charge |
shpc-registry automated BioContainers addition for bioconductor-charge |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-charm |
shpc-registry automated BioContainers addition for bioconductor-charm |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-charmdata |
shpc-registry automated BioContainers addition for bioconductor-charmdata |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chemminedrugs |
shpc-registry automated BioContainers addition for bioconductor-chemminedrugs |
rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chemmineob |
singularity registry hpc automated addition for bioconductor-chemmineob |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, obfitall, obmm, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop, obrms, obrotamer, obrotate, obspectrophore, obsym, obtautomer, obthermo, roundtrip, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chemminer |
shpc-registry automated BioContainers addition for bioconductor-chemminer |
rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chetah |
shpc-registry automated BioContainers addition for bioconductor-chetah |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chic.data |
shpc-registry automated BioContainers addition for bioconductor-chic.data |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chic |
shpc-registry automated BioContainers addition for bioconductor-chic |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chicago |
shpc-registry automated BioContainers addition for bioconductor-chicago |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chicken.db |
shpc-registry automated BioContainers addition for bioconductor-chicken.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chicken.db0 |
shpc-registry automated BioContainers addition for bioconductor-chicken.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chickencdf |
shpc-registry automated BioContainers addition for bioconductor-chickencdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chickenprobe |
shpc-registry automated BioContainers addition for bioconductor-chickenprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chihaya |
singularity registry hpc automated addition for bioconductor-chihaya |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chimera |
shpc-registry automated BioContainers addition for bioconductor-chimera |
STAR, STARlong, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chimeraviz |
shpc-registry automated BioContainers addition for bioconductor-chimeraviz |
pandoc-citeproc, pandoc, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chimp.db0 |
shpc-registry automated BioContainers addition for bioconductor-chimp.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chimphumanbraindata |
shpc-registry automated BioContainers addition for bioconductor-chimphumanbraindata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipanalyser |
shpc-registry automated BioContainers addition for bioconductor-chipanalyser |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipcomp |
shpc-registry automated BioContainers addition for bioconductor-chipcomp |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipenrich.data |
shpc-registry automated BioContainers addition for bioconductor-chipenrich.data |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipenrich |
shpc-registry automated BioContainers addition for bioconductor-chipenrich |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipexoqual |
shpc-registry automated BioContainers addition for bioconductor-chipexoqual |
pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipexoqualexample |
shpc-registry automated BioContainers addition for bioconductor-chipexoqualexample |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chippeakanno |
shpc-registry automated BioContainers addition for bioconductor-chippeakanno |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipqc |
shpc-registry automated BioContainers addition for bioconductor-chipqc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipseeker |
shpc-registry automated BioContainers addition for bioconductor-chipseeker |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipseq |
shpc-registry automated BioContainers addition for bioconductor-chipseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipseqdbdata |
shpc-registry automated BioContainers addition for bioconductor-chipseqdbdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipseqr |
shpc-registry automated BioContainers addition for bioconductor-chipseqr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipseqspike |
shpc-registry automated BioContainers addition for bioconductor-chipseqspike |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipsim |
shpc-registry automated BioContainers addition for bioconductor-chipsim |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipxpress |
shpc-registry automated BioContainers addition for bioconductor-chipxpress |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipxpressdata |
shpc-registry automated BioContainers addition for bioconductor-chipxpressdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chopsticks |
shpc-registry automated BioContainers addition for bioconductor-chopsticks |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chrogps |
shpc-registry automated BioContainers addition for bioconductor-chrogps |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chromdraw |
shpc-registry automated BioContainers addition for bioconductor-chromdraw |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chromheatmap |
shpc-registry automated BioContainers addition for bioconductor-chromheatmap |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chromhmmdata |
shpc-registry automated BioContainers addition for bioconductor-chromhmmdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chromplot |
shpc-registry automated BioContainers addition for bioconductor-chromplot |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chromscape |
shpc-registry automated BioContainers addition for bioconductor-chromscape |
pandoc-server, glpsol, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chromstar |
shpc-registry automated BioContainers addition for bioconductor-chromstar |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chromstardata |
shpc-registry automated BioContainers addition for bioconductor-chromstardata |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chromswitch |
shpc-registry automated BioContainers addition for bioconductor-chromswitch |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chromvar |
shpc-registry automated BioContainers addition for bioconductor-chromvar |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chronos |
shpc-registry automated BioContainers addition for bioconductor-chronos |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cicero |
shpc-registry automated BioContainers addition for bioconductor-cicero |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cimice |
shpc-registry automated BioContainers addition for bioconductor-cimice |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cindex |
shpc-registry automated BioContainers addition for bioconductor-cindex |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-circrnaprofiler |
shpc-registry automated BioContainers addition for bioconductor-circrnaprofiler |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-circseqaligntk |
singularity registry hpc automated addition for bioconductor-circseqaligntk |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cispath |
shpc-registry automated BioContainers addition for bioconductor-cispath |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-citefuse |
shpc-registry automated BioContainers addition for bioconductor-citefuse |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-citruscdf |
shpc-registry automated BioContainers addition for bioconductor-citruscdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-citrusprobe |
shpc-registry automated BioContainers addition for bioconductor-citrusprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clariomdhumanprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-clariomdhumanprobeset.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clariomdhumantranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-clariomdhumantranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clariomshumantranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-clariomshumantranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clariomsmousetranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-clariomsmousetranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clariomsrathttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-clariomsrathttranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clariomsrattranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-clariomsrattranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-classifyr |
shpc-registry automated BioContainers addition for bioconductor-classifyr |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cleanupdtseq |
shpc-registry automated BioContainers addition for bioconductor-cleanupdtseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cleanuprnaseq |
singularity registry hpc automated addition for bioconductor-cleanuprnaseq |
pandoc-lua, x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, pandoc-server, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cleaver |
shpc-registry automated BioContainers addition for bioconductor-cleaver |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clevrvis |
singularity registry hpc automated addition for bioconductor-clevrvis |
hb-info, tjbench, glpsol, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-clippda |
shpc-registry automated BioContainers addition for bioconductor-clippda |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clipper |
shpc-registry automated BioContainers addition for bioconductor-clipper |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cliprofiler |
shpc-registry automated BioContainers addition for bioconductor-cliprofiler |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cliquems |
shpc-registry automated BioContainers addition for bioconductor-cliquems |
zipcmp, zipmerge, ziptool, gif2hdf, glpsol, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cll |
shpc-registry automated BioContainers addition for bioconductor-cll |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cllmethylation |
shpc-registry automated BioContainers addition for bioconductor-cllmethylation |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-clomial |
shpc-registry automated BioContainers addition for bioconductor-clomial |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clonality |
shpc-registry automated BioContainers addition for bioconductor-clonality |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clonotyper |
shpc-registry automated BioContainers addition for bioconductor-clonotyper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clst |
shpc-registry automated BioContainers addition for bioconductor-clst |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clstutils |
shpc-registry automated BioContainers addition for bioconductor-clstutils |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clumsid |
shpc-registry automated BioContainers addition for bioconductor-clumsid |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-clumsiddata |
shpc-registry automated BioContainers addition for bioconductor-clumsiddata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-clustcomp |
shpc-registry automated BioContainers addition for bioconductor-clustcomp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clusterexperiment |
shpc-registry automated BioContainers addition for bioconductor-clusterexperiment |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-clusterfoldsimilarity |
singularity registry hpc automated addition for bioconductor-clusterfoldsimilarity |
pandoc-lua, x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, pandoc-server, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-clusterjudge |
shpc-registry automated BioContainers addition for bioconductor-clusterjudge |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-clusterprofiler |
shpc-registry automated BioContainers addition for bioconductor-clusterprofiler |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clusterseq |
shpc-registry automated BioContainers addition for bioconductor-clusterseq |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-clustersignificance |
shpc-registry automated BioContainers addition for bioconductor-clustersignificance |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clusterstab |
shpc-registry automated BioContainers addition for bioconductor-clusterstab |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clustifyr |
shpc-registry automated BioContainers addition for bioconductor-clustifyr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clustifyrdatahub |
shpc-registry automated BioContainers addition for bioconductor-clustifyrdatahub |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clustirr |
singularity registry hpc automated addition for bioconductor-clustirr |
pcre2posix_test, hb-info, glpsol, tjbench, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cma |
shpc-registry automated BioContainers addition for bioconductor-cma |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cmap |
shpc-registry automated BioContainers addition for bioconductor-cmap |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cmap2data |
shpc-registry automated BioContainers addition for bioconductor-cmap2data |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cmapr |
shpc-registry automated BioContainers addition for bioconductor-cmapr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cn.farms |
shpc-registry automated BioContainers addition for bioconductor-cn.farms |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cn.mops |
shpc-registry automated BioContainers addition for bioconductor-cn.mops |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnanorm |
shpc-registry automated BioContainers addition for bioconductor-cnanorm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cner |
shpc-registry automated BioContainers addition for bioconductor-cner |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnordt |
shpc-registry automated BioContainers addition for bioconductor-cnordt |
diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnorfeeder |
shpc-registry automated BioContainers addition for bioconductor-cnorfeeder |
diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnorfuzzy |
shpc-registry automated BioContainers addition for bioconductor-cnorfuzzy |
diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnorode |
shpc-registry automated BioContainers addition for bioconductor-cnorode |
diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnpbayes |
shpc-registry automated BioContainers addition for bioconductor-cnpbayes |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cntools |
shpc-registry automated BioContainers addition for bioconductor-cntools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnvfilter |
shpc-registry automated BioContainers addition for bioconductor-cnvfilter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnvgears |
shpc-registry automated BioContainers addition for bioconductor-cnvgears |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnvgsa |
shpc-registry automated BioContainers addition for bioconductor-cnvgsa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnvgsadata |
shpc-registry automated BioContainers addition for bioconductor-cnvgsadata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnviz |
shpc-registry automated BioContainers addition for bioconductor-cnviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnvmetrics |
singularity registry hpc automated addition for bioconductor-cnvmetrics |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnvpanelizer |
shpc-registry automated BioContainers addition for bioconductor-cnvpanelizer |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnvranger |
shpc-registry automated BioContainers addition for bioconductor-cnvranger |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnvrd2 |
shpc-registry automated BioContainers addition for bioconductor-cnvrd2 |
jags |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnvtools |
shpc-registry automated BioContainers addition for bioconductor-cnvtools |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cobindr |
shpc-registry automated BioContainers addition for bioconductor-cobindr |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cocitestats |
shpc-registry automated BioContainers addition for bioconductor-cocitestats |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cocoa |
shpc-registry automated BioContainers addition for bioconductor-cocoa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-codelink |
shpc-registry automated BioContainers addition for bioconductor-codelink |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-codex |
shpc-registry automated BioContainers addition for bioconductor-codex |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-coexnet |
shpc-registry automated BioContainers addition for bioconductor-coexnet |
pandoc-citeproc, pandoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cogaps |
shpc-registry automated BioContainers addition for bioconductor-cogaps |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cogena |
shpc-registry automated BioContainers addition for bioconductor-cogena |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cogeqc |
singularity registry hpc automated addition for bioconductor-cogeqc |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cogito |
shpc-registry automated BioContainers addition for bioconductor-cogito |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cogps |
shpc-registry automated BioContainers addition for bioconductor-cogps |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cohcap |
shpc-registry automated BioContainers addition for bioconductor-cohcap |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cohcapanno |
shpc-registry automated BioContainers addition for bioconductor-cohcapanno |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cola |
shpc-registry automated BioContainers addition for bioconductor-cola |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-colonca |
shpc-registry automated BioContainers addition for bioconductor-colonca |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-comapr |
singularity registry hpc automated addition for bioconductor-comapr |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-combi |
shpc-registry automated BioContainers addition for bioconductor-combi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-comet |
shpc-registry automated BioContainers addition for bioconductor-comet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-comethdmr |
singularity registry hpc automated addition for bioconductor-comethdmr |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-compartmap |
shpc-registry automated BioContainers addition for bioconductor-compartmap |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-compass |
shpc-registry automated BioContainers addition for bioconductor-compass |
pandoc-server, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-compcoder |
shpc-registry automated BioContainers addition for bioconductor-compcoder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-compepitools |
shpc-registry automated BioContainers addition for bioconductor-compepitools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-compgo |
shpc-registry automated BioContainers addition for bioconductor-compgo |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-complexheatmap |
shpc-registry automated BioContainers addition for bioconductor-complexheatmap |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-compounddb |
singularity registry hpc automated addition for bioconductor-compounddb |
installBiocDataPackage.sh, tomlq, xq, yq, rsvg-convert, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-compran |
shpc-registry automated BioContainers addition for bioconductor-compran |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-conclus |
shpc-registry automated BioContainers addition for bioconductor-conclus |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-concordexr |
singularity registry hpc automated addition for bioconductor-concordexr |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-condcomp |
shpc-registry automated BioContainers addition for bioconductor-condcomp |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-condiments |
shpc-registry automated BioContainers addition for bioconductor-condiments |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-confess |
shpc-registry automated BioContainers addition for bioconductor-confess |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-confessdata |
shpc-registry automated BioContainers addition for bioconductor-confessdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-connectivitymap |
shpc-registry automated BioContainers addition for bioconductor-connectivitymap |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-consensus |
shpc-registry automated BioContainers addition for bioconductor-consensus |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-consensusclusterplus |
shpc-registry automated BioContainers addition for bioconductor-consensusclusterplus |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-consensusde |
shpc-registry automated BioContainers addition for bioconductor-consensusde |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-consensusov |
shpc-registry automated BioContainers addition for bioconductor-consensusov |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-consensusseeker |
shpc-registry automated BioContainers addition for bioconductor-consensusseeker |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-consica |
singularity registry hpc automated addition for bioconductor-consica |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-constand |
shpc-registry automated BioContainers addition for bioconductor-constand |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-contibait |
shpc-registry automated BioContainers addition for bioconductor-contibait |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-conumee |
shpc-registry automated BioContainers addition for bioconductor-conumee |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-convert |
shpc-registry automated BioContainers addition for bioconductor-convert |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-copa |
shpc-registry automated BioContainers addition for bioconductor-copa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-copdsexualdimorphism.data |
shpc-registry automated BioContainers addition for bioconductor-copdsexualdimorphism.data |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-copyhelper |
shpc-registry automated BioContainers addition for bioconductor-copyhelper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-copyneutralima |
shpc-registry automated BioContainers addition for bioconductor-copyneutralima |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-copynumber |
shpc-registry automated BioContainers addition for bioconductor-copynumber |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-copynumberplots |
shpc-registry automated BioContainers addition for bioconductor-copynumberplots |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-copywriter |
shpc-registry automated BioContainers addition for bioconductor-copywriter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cordon |
shpc-registry automated BioContainers addition for bioconductor-cordon |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-coregflux |
shpc-registry automated BioContainers addition for bioconductor-coregflux |
glpsol, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-coregnet |
shpc-registry automated BioContainers addition for bioconductor-coregnet |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-coregx |
shpc-registry automated BioContainers addition for bioconductor-coregx |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cormotif |
shpc-registry automated BioContainers addition for bioconductor-cormotif |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cormut |
shpc-registry automated BioContainers addition for bioconductor-cormut |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-corral |
shpc-registry automated BioContainers addition for bioconductor-corral |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-correp |
shpc-registry automated BioContainers addition for bioconductor-correp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-coseq |
shpc-registry automated BioContainers addition for bioconductor-coseq |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cosia |
singularity registry hpc automated addition for bioconductor-cosia |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cosiadata |
singularity registry hpc automated addition for bioconductor-cosiadata |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cosmic.67 |
shpc-registry automated BioContainers addition for bioconductor-cosmic.67 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cosmiq |
shpc-registry automated BioContainers addition for bioconductor-cosmiq |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cosmosr |
shpc-registry automated BioContainers addition for bioconductor-cosmosr |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cosnet |
shpc-registry automated BioContainers addition for bioconductor-cosnet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cotan |
singularity registry hpc automated addition for bioconductor-cotan |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cottoncdf |
shpc-registry automated BioContainers addition for bioconductor-cottoncdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cottonprobe |
shpc-registry automated BioContainers addition for bioconductor-cottonprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-countclust |
shpc-registry automated BioContainers addition for bioconductor-countclust |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-countsimqc |
shpc-registry automated BioContainers addition for bioconductor-countsimqc |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-coveb |
shpc-registry automated BioContainers addition for bioconductor-coveb |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-coverageview |
shpc-registry automated BioContainers addition for bioconductor-coverageview |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-covrna |
shpc-registry automated BioContainers addition for bioconductor-covrna |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cpvsnp |
shpc-registry automated BioContainers addition for bioconductor-cpvsnp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cqn |
shpc-registry automated BioContainers addition for bioconductor-cqn |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-crcl18 |
shpc-registry automated BioContainers addition for bioconductor-crcl18 |
x86_64-conda-linux-gnu-gfortran.bin, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crimage |
shpc-registry automated BioContainers addition for bioconductor-crimage |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprbase |
singularity registry hpc automated addition for bioconductor-crisprbase |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprbowtie |
singularity registry hpc automated addition for bioconductor-crisprbowtie |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprbwa |
singularity registry hpc automated addition for bioconductor-crisprbwa |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprdesign |
singularity registry hpc automated addition for bioconductor-crisprdesign |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprscore |
singularity registry hpc automated addition for bioconductor-crisprscore |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprscoredata |
singularity registry hpc automated addition for bioconductor-crisprscoredata |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprseek |
shpc-registry automated BioContainers addition for bioconductor-crisprseek |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprseekplus |
shpc-registry automated BioContainers addition for bioconductor-crisprseekplus |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprshiny |
singularity registry hpc automated addition for bioconductor-crisprshiny |
pandoc-lua, x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, pandoc-server, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprvariants |
shpc-registry automated BioContainers addition for bioconductor-crisprvariants |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprverse |
singularity registry hpc automated addition for bioconductor-crisprverse |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprviz |
singularity registry hpc automated addition for bioconductor-crisprviz |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crlmm |
shpc-registry automated BioContainers addition for bioconductor-crlmm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-crossicc |
shpc-registry automated BioContainers addition for bioconductor-crossicc |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crossmeta |
shpc-registry automated BioContainers addition for bioconductor-crossmeta |
xgboost, pandoc-citeproc, pandoc, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-csar |
shpc-registry automated BioContainers addition for bioconductor-csar |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-csaw |
shpc-registry automated BioContainers addition for bioconductor-csaw |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-csdr |
shpc-registry automated BioContainers addition for bioconductor-csdr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cssp |
shpc-registry automated BioContainers addition for bioconductor-cssp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cssq |
shpc-registry automated BioContainers addition for bioconductor-cssq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ctc |
shpc-registry automated BioContainers addition for bioconductor-ctc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ctcf |
shpc-registry automated BioContainers addition for bioconductor-ctcf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ctdata |
singularity registry hpc automated addition for bioconductor-ctdata |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ctdquerier |
shpc-registry automated BioContainers addition for bioconductor-ctdquerier |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ctggem |
shpc-registry automated BioContainers addition for bioconductor-ctggem |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ctrap |
shpc-registry automated BioContainers addition for bioconductor-ctrap |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ctsge |
shpc-registry automated BioContainers addition for bioconductor-ctsge |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ctsv |
singularity registry hpc automated addition for bioconductor-ctsv |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cummerbund |
shpc-registry automated BioContainers addition for bioconductor-cummerbund |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-curatedadipoarray |
shpc-registry automated BioContainers addition for bioconductor-curatedadipoarray |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-curatedadipochip |
shpc-registry automated BioContainers addition for bioconductor-curatedadipochip |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-curatedadiporna |
shpc-registry automated BioContainers addition for bioconductor-curatedadiporna |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-curatedatlasqueryr |
singularity registry hpc automated addition for bioconductor-curatedatlasqueryr |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-curatedbladderdata |
shpc-registry automated BioContainers addition for bioconductor-curatedbladderdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-curatedbreastdata |
shpc-registry automated BioContainers addition for bioconductor-curatedbreastdata |
pandoc-server, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-curatedcrcdata |
shpc-registry automated BioContainers addition for bioconductor-curatedcrcdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-curatedmetagenomicdata |
shpc-registry automated BioContainers addition for bioconductor-curatedmetagenomicdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-curatedovariandata |
shpc-registry automated BioContainers addition for bioconductor-curatedovariandata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-curatedtbdata |
shpc-registry automated BioContainers addition for bioconductor-curatedtbdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-curatedtcgadata |
shpc-registry automated BioContainers addition for bioconductor-curatedtcgadata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-customcmpdb |
shpc-registry automated BioContainers addition for bioconductor-customcmpdb |
rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders |
|
GITHUB
|
quay.io/biocontainers/bioconductor-customprodb |
shpc-registry automated BioContainers addition for bioconductor-customprodb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cve |
shpc-registry automated BioContainers addition for bioconductor-cve |
pandoc-citeproc, pandoc, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cyanofilter |
shpc-registry automated BioContainers addition for bioconductor-cyanofilter |
geosop, geos-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cycle |
shpc-registry automated BioContainers addition for bioconductor-cycle |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cydar |
shpc-registry automated BioContainers addition for bioconductor-cydar |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cyp450cdf |
shpc-registry automated BioContainers addition for bioconductor-cyp450cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytodx |
shpc-registry automated BioContainers addition for bioconductor-cytodx |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytofast |
shpc-registry automated BioContainers addition for bioconductor-cytofast |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytofpower |
shpc-registry automated BioContainers addition for bioconductor-cytofpower |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytofqc |
singularity registry hpc automated addition for bioconductor-cytofqc |
f2py3.11, hb-info, tjbench, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytoglmm |
shpc-registry automated BioContainers addition for bioconductor-cytoglmm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytokernel |
shpc-registry automated BioContainers addition for bioconductor-cytokernel |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytolib |
shpc-registry automated BioContainers addition for bioconductor-cytolib |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytomapper |
shpc-registry automated BioContainers addition for bioconductor-cytomapper |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytomem |
singularity registry hpc automated addition for bioconductor-cytomem |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytoml |
shpc-registry automated BioContainers addition for bioconductor-cytoml |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytopipeline |
singularity registry hpc automated addition for bioconductor-cytopipeline |
hb-info, tjbench, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytopipelinegui |
singularity registry hpc automated addition for bioconductor-cytopipelinegui |
pcre2posix_test, hb-info, tjbench, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytotree |
shpc-registry automated BioContainers addition for bioconductor-cytotree |
pandoc, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytoviewer |
singularity registry hpc automated addition for bioconductor-cytoviewer |
elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, protoc-23.3.0, run_x_platform_fuzz_corpus, sozip, elasticurl, elasticurl_cpp, elastipubsub, pg_amcheck, h5delete, bsdcat, bsdcpio, bsdtar, pdfsig, gdal_create, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, sha256_profile, pg_verifybackup, pdfattach, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dada2 |
shpc-registry automated BioContainers addition for bioconductor-dada2 |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-daglogo |
shpc-registry automated BioContainers addition for bioconductor-daglogo |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dama |
shpc-registry automated BioContainers addition for bioconductor-dama |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-damefinder |
shpc-registry automated BioContainers addition for bioconductor-damefinder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-damirseq |
shpc-registry automated BioContainers addition for bioconductor-damirseq |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dapar |
shpc-registry automated BioContainers addition for bioconductor-dapar |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dapardata |
shpc-registry automated BioContainers addition for bioconductor-dapardata |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dart |
shpc-registry automated BioContainers addition for bioconductor-dart |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dasper |
shpc-registry automated BioContainers addition for bioconductor-dasper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-davidtiling |
shpc-registry automated BioContainers addition for bioconductor-davidtiling |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dbchip |
shpc-registry automated BioContainers addition for bioconductor-dbchip |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dcanr |
shpc-registry automated BioContainers addition for bioconductor-dcanr |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dcats |
singularity registry hpc automated addition for bioconductor-dcats |
pcre2posix_test, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dce |
shpc-registry automated BioContainers addition for bioconductor-dce |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dcgsa |
shpc-registry automated BioContainers addition for bioconductor-dcgsa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dchiprep |
shpc-registry automated BioContainers addition for bioconductor-dchiprep |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ddct |
shpc-registry automated BioContainers addition for bioconductor-ddct |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ddpcrclust |
shpc-registry automated BioContainers addition for bioconductor-ddpcrclust |
geos-config, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dearseq |
shpc-registry automated BioContainers addition for bioconductor-dearseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-debcam |
shpc-registry automated BioContainers addition for bioconductor-debcam |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-debrowser |
shpc-registry automated BioContainers addition for bioconductor-debrowser |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-decipher |
shpc-registry automated BioContainers addition for bioconductor-decipher |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-deco |
shpc-registry automated BioContainers addition for bioconductor-deco |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-decomplexdisease |
shpc-registry automated BioContainers addition for bioconductor-decomplexdisease |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-decomptumor2sig |
shpc-registry automated BioContainers addition for bioconductor-decomptumor2sig |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-deconrnaseq |
shpc-registry automated BioContainers addition for bioconductor-deconrnaseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-decontam |
shpc-registry automated BioContainers addition for bioconductor-decontam |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-decontx |
singularity registry hpc automated addition for bioconductor-decontx |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-deconvr |
shpc-registry automated BioContainers addition for bioconductor-deconvr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-decoupler |
shpc-registry automated BioContainers addition for bioconductor-decoupler |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-deds |
shpc-registry automated BioContainers addition for bioconductor-deds |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-deepbluer |
shpc-registry automated BioContainers addition for bioconductor-deepbluer |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-deeppincs |
shpc-registry automated BioContainers addition for bioconductor-deeppincs |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-deepsnv |
shpc-registry automated BioContainers addition for bioconductor-deepsnv |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-deformats |
shpc-registry automated BioContainers addition for bioconductor-deformats |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-degcre |
singularity registry hpc automated addition for bioconductor-degcre |
x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-degnorm |
shpc-registry automated BioContainers addition for bioconductor-degnorm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-degraph |
shpc-registry automated BioContainers addition for bioconductor-degraph |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage |
|
GITHUB
|
quay.io/biocontainers/bioconductor-degreport |
shpc-registry automated BioContainers addition for bioconductor-degreport |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-degseq |
shpc-registry automated BioContainers addition for bioconductor-degseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-delayedarray |
shpc-registry automated BioContainers addition for bioconductor-delayedarray |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-delayeddataframe |
shpc-registry automated BioContainers addition for bioconductor-delayeddataframe |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-delayedmatrixstats |
shpc-registry automated BioContainers addition for bioconductor-delayedmatrixstats |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-delayedrandomarray |
shpc-registry automated BioContainers addition for bioconductor-delayedrandomarray |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-delayedtensor |
shpc-registry automated BioContainers addition for bioconductor-delayedtensor |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-delocal |
singularity registry hpc automated addition for bioconductor-delocal |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-deltacapturec |
shpc-registry automated BioContainers addition for bioconductor-deltacapturec |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-deltagseg |
shpc-registry automated BioContainers addition for bioconductor-deltagseg |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-demand |
shpc-registry automated BioContainers addition for bioconductor-demand |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-demixt |
shpc-registry automated BioContainers addition for bioconductor-demixt |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-demuxmix |
singularity registry hpc automated addition for bioconductor-demuxmix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-demuxsnp |
singularity registry hpc automated addition for bioconductor-demuxsnp |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-densvis |
shpc-registry automated BioContainers addition for bioconductor-densvis |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dep |
shpc-registry automated BioContainers addition for bioconductor-dep |
pandoc-citeproc, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-depecher |
shpc-registry automated BioContainers addition for bioconductor-depecher |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-depinfer |
singularity registry hpc automated addition for bioconductor-depinfer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-depmap |
shpc-registry automated BioContainers addition for bioconductor-depmap |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-deqms |
shpc-registry automated BioContainers addition for bioconductor-deqms |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-derfinder |
shpc-registry automated BioContainers addition for bioconductor-derfinder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-derfinderdata |
shpc-registry automated BioContainers addition for bioconductor-derfinderdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-derfinderhelper |
shpc-registry automated BioContainers addition for bioconductor-derfinderhelper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-derfinderplot |
shpc-registry automated BioContainers addition for bioconductor-derfinderplot |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-descan2 |
shpc-registry automated BioContainers addition for bioconductor-descan2 |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-deseq |
shpc-registry automated BioContainers addition for bioconductor-deseq |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-deseq2 |
shpc-registry automated BioContainers addition for bioconductor-deseq2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-desingle |
shpc-registry automated BioContainers addition for bioconductor-desingle |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-desousa2013 |
shpc-registry automated BioContainers addition for bioconductor-desousa2013 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-despace |
singularity registry hpc automated addition for bioconductor-despace |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, hb-info, f2py3.11, dvipdf, eps2eps, gs, gsbj |
|
GITHUB
|
quay.io/biocontainers/bioconductor-destiny |
shpc-registry automated BioContainers addition for bioconductor-destiny |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-desubs |
shpc-registry automated BioContainers addition for bioconductor-desubs |
idn2, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dewseq |
shpc-registry automated BioContainers addition for bioconductor-dewseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dexma |
shpc-registry automated BioContainers addition for bioconductor-dexma |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dexmadata |
shpc-registry automated BioContainers addition for bioconductor-dexmadata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dexseq |
shpc-registry automated BioContainers addition for bioconductor-dexseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dexus |
shpc-registry automated BioContainers addition for bioconductor-dexus |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dfp |
shpc-registry automated BioContainers addition for bioconductor-dfp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dfplyr |
singularity registry hpc automated addition for bioconductor-dfplyr |
x86_64-conda-linux-gnu.cfg, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dialignr |
shpc-registry automated BioContainers addition for bioconductor-dialignr |
zipcmp, zipmerge, ziptool, gif2hdf, glpsol, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-diffbind |
shpc-registry automated BioContainers addition for bioconductor-diffbind |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-diffcoexp |
shpc-registry automated BioContainers addition for bioconductor-diffcoexp |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-diffcyt |
shpc-registry automated BioContainers addition for bioconductor-diffcyt |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-differentialregulation |
singularity registry hpc automated addition for bioconductor-differentialregulation |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-diffgeneanalysis |
shpc-registry automated BioContainers addition for bioconductor-diffgeneanalysis |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-diffhic |
shpc-registry automated BioContainers addition for bioconductor-diffhic |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-difflogo |
shpc-registry automated BioContainers addition for bioconductor-difflogo |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-diffloop |
shpc-registry automated BioContainers addition for bioconductor-diffloop |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-diffloopdata |
shpc-registry automated BioContainers addition for bioconductor-diffloopdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-diffustats |
shpc-registry automated BioContainers addition for bioconductor-diffustats |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-diffutr |
shpc-registry automated BioContainers addition for bioconductor-diffutr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-diggit |
shpc-registry automated BioContainers addition for bioconductor-diggit |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-diggitdata |
shpc-registry automated BioContainers addition for bioconductor-diggitdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dino |
shpc-registry automated BioContainers addition for bioconductor-dino |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dir.expiry |
shpc-registry automated BioContainers addition for bioconductor-dir.expiry |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-director |
shpc-registry automated BioContainers addition for bioconductor-director |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dirichletmultinomial |
shpc-registry automated BioContainers addition for bioconductor-dirichletmultinomial |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-discordant |
shpc-registry automated BioContainers addition for bioconductor-discordant |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-discorhythm |
shpc-registry automated BioContainers addition for bioconductor-discorhythm |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-distinct |
shpc-registry automated BioContainers addition for bioconductor-distinct |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dittoseq |
shpc-registry automated BioContainers addition for bioconductor-dittoseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-divergence |
shpc-registry automated BioContainers addition for bioconductor-divergence |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dks |
shpc-registry automated BioContainers addition for bioconductor-dks |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dlbcl |
shpc-registry automated BioContainers addition for bioconductor-dlbcl |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dmcfb |
shpc-registry automated BioContainers addition for bioconductor-dmcfb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dmchmm |
shpc-registry automated BioContainers addition for bioconductor-dmchmm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dmelsgi |
shpc-registry automated BioContainers addition for bioconductor-dmelsgi |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dmrcaller |
shpc-registry automated BioContainers addition for bioconductor-dmrcaller |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dmrcate |
shpc-registry automated BioContainers addition for bioconductor-dmrcate |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dmrcatedata |
shpc-registry automated BioContainers addition for bioconductor-dmrcatedata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dmrforpairs |
shpc-registry automated BioContainers addition for bioconductor-dmrforpairs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dmrscan |
shpc-registry automated BioContainers addition for bioconductor-dmrscan |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dmrseq |
shpc-registry automated BioContainers addition for bioconductor-dmrseq |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dnabarcodecompatibility |
shpc-registry automated BioContainers addition for bioconductor-dnabarcodecompatibility |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dnabarcodes |
shpc-registry automated BioContainers addition for bioconductor-dnabarcodes |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dnacopy |
shpc-registry automated BioContainers addition for bioconductor-dnacopy |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dnafusion |
singularity registry hpc automated addition for bioconductor-dnafusion |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dnashaper |
shpc-registry automated BioContainers addition for bioconductor-dnashaper |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dnazoodata |
singularity registry hpc automated addition for bioconductor-dnazoodata |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-do.db |
shpc-registry automated BioContainers addition for bioconductor-do.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dominoeffect |
shpc-registry automated BioContainers addition for bioconductor-dominoeffect |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-donapllp2013 |
shpc-registry automated BioContainers addition for bioconductor-donapllp2013 |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-doppelgangr |
shpc-registry automated BioContainers addition for bioconductor-doppelgangr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-doqtl |
shpc-registry automated BioContainers addition for bioconductor-doqtl |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dorothea |
shpc-registry automated BioContainers addition for bioconductor-dorothea |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-doscheda |
shpc-registry automated BioContainers addition for bioconductor-doscheda |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dose |
shpc-registry automated BioContainers addition for bioconductor-dose |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-doser |
shpc-registry automated BioContainers addition for bioconductor-doser |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-doubletrouble |
singularity registry hpc automated addition for bioconductor-doubletrouble |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dpeak |
shpc-registry automated BioContainers addition for bioconductor-dpeak |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-drawproteins |
shpc-registry automated BioContainers addition for bioconductor-drawproteins |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dream4 |
shpc-registry automated BioContainers addition for bioconductor-dream4 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dresscheck |
shpc-registry automated BioContainers addition for bioconductor-dresscheck |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-drimseq |
shpc-registry automated BioContainers addition for bioconductor-drimseq |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-drivernet |
shpc-registry automated BioContainers addition for bioconductor-drivernet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-droplettestfiles |
shpc-registry automated BioContainers addition for bioconductor-droplettestfiles |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dropletutils |
shpc-registry automated BioContainers addition for bioconductor-dropletutils |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-drosgenome1.db |
shpc-registry automated BioContainers addition for bioconductor-drosgenome1.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-drosgenome1cdf |
shpc-registry automated BioContainers addition for bioconductor-drosgenome1cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-drosgenome1probe |
shpc-registry automated BioContainers addition for bioconductor-drosgenome1probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-drosophila2.db |
shpc-registry automated BioContainers addition for bioconductor-drosophila2.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-drosophila2cdf |
shpc-registry automated BioContainers addition for bioconductor-drosophila2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-drosophila2probe |
shpc-registry automated BioContainers addition for bioconductor-drosophila2probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-drugtargetinteractions |
shpc-registry automated BioContainers addition for bioconductor-drugtargetinteractions |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-drugvsdisease |
shpc-registry automated BioContainers addition for bioconductor-drugvsdisease |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-drugvsdiseasedata |
shpc-registry automated BioContainers addition for bioconductor-drugvsdiseasedata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dsimer |
shpc-registry automated BioContainers addition for bioconductor-dsimer |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dsqtl |
shpc-registry automated BioContainers addition for bioconductor-dsqtl |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dss |
shpc-registry automated BioContainers addition for bioconductor-dss |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dstruct |
shpc-registry automated BioContainers addition for bioconductor-dstruct |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dta |
shpc-registry automated BioContainers addition for bioconductor-dta |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dualks |
shpc-registry automated BioContainers addition for bioconductor-dualks |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dune |
shpc-registry automated BioContainers addition for bioconductor-dune |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-duoclustering2018 |
shpc-registry automated BioContainers addition for bioconductor-duoclustering2018 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dupchecker |
shpc-registry automated BioContainers addition for bioconductor-dupchecker |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dupradar |
shpc-registry automated BioContainers addition for bioconductor-dupradar |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dvddata |
shpc-registry automated BioContainers addition for bioconductor-dvddata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dyebias |
shpc-registry automated BioContainers addition for bioconductor-dyebias |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dyebiasexamples |
shpc-registry automated BioContainers addition for bioconductor-dyebiasexamples |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dyndoc |
shpc-registry automated BioContainers addition for bioconductor-dyndoc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-easier |
shpc-registry automated BioContainers addition for bioconductor-easier |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-easierdata |
shpc-registry automated BioContainers addition for bioconductor-easierdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-easycelltype |
singularity registry hpc automated addition for bioconductor-easycelltype |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-easylift |
singularity registry hpc automated addition for bioconductor-easylift |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-easyqpcr |
shpc-registry automated BioContainers addition for bioconductor-easyqpcr |
gtk-builder-convert, gtk-demo, gtk-query-immodules-2.0, gtk-update-icon-cache, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-easyreporting |
shpc-registry automated BioContainers addition for bioconductor-easyreporting |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-easyrnaseq |
shpc-registry automated BioContainers addition for bioconductor-easyrnaseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-eatonetalchipseq |
shpc-registry automated BioContainers addition for bioconductor-eatonetalchipseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ebarrays |
shpc-registry automated BioContainers addition for bioconductor-ebarrays |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ebcoexpress |
shpc-registry automated BioContainers addition for bioconductor-ebcoexpress |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ebimage |
shpc-registry automated BioContainers addition for bioconductor-ebimage |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ebsea |
shpc-registry automated BioContainers addition for bioconductor-ebsea |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ebseq |
shpc-registry automated BioContainers addition for bioconductor-ebseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ebseqhmm |
shpc-registry automated BioContainers addition for bioconductor-ebseqhmm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ecoli2.db |
shpc-registry automated BioContainers addition for bioconductor-ecoli2.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ecoli2cdf |
shpc-registry automated BioContainers addition for bioconductor-ecoli2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ecoli2probe |
shpc-registry automated BioContainers addition for bioconductor-ecoli2probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ecoliasv2cdf |
shpc-registry automated BioContainers addition for bioconductor-ecoliasv2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ecoliasv2probe |
shpc-registry automated BioContainers addition for bioconductor-ecoliasv2probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ecolicdf |
shpc-registry automated BioContainers addition for bioconductor-ecolicdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ecolik12.db0 |
shpc-registry automated BioContainers addition for bioconductor-ecolik12.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ecolileucine |
shpc-registry automated BioContainers addition for bioconductor-ecolileucine |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ecoliprobe |
shpc-registry automated BioContainers addition for bioconductor-ecoliprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ecolisakai.db0 |
shpc-registry automated BioContainers addition for bioconductor-ecolisakai.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ecolitk |
shpc-registry automated BioContainers addition for bioconductor-ecolitk |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-edaseq |
shpc-registry automated BioContainers addition for bioconductor-edaseq |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-edda |
shpc-registry automated BioContainers addition for bioconductor-edda |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-edge |
shpc-registry automated BioContainers addition for bioconductor-edge |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-edger |
shpc-registry automated BioContainers addition for bioconductor-edger |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-edirquery |
singularity registry hpc automated addition for bioconductor-edirquery |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-eds |
singularity registry hpc automated addition for bioconductor-eds |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-eegc |
shpc-registry automated BioContainers addition for bioconductor-eegc |
udunits2, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-egad |
shpc-registry automated BioContainers addition for bioconductor-egad |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-egsea |
shpc-registry automated BioContainers addition for bioconductor-egsea |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-egseadata |
shpc-registry automated BioContainers addition for bioconductor-egseadata |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-eir |
shpc-registry automated BioContainers addition for bioconductor-eir |
rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders |
|
GITHUB
|
quay.io/biocontainers/bioconductor-eisa |
shpc-registry automated BioContainers addition for bioconductor-eisa |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-eisar |
shpc-registry automated BioContainers addition for bioconductor-eisar |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-elbow |
shpc-registry automated BioContainers addition for bioconductor-elbow |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-elmer.data |
shpc-registry automated BioContainers addition for bioconductor-elmer.data |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-elmer |
shpc-registry automated BioContainers addition for bioconductor-elmer |
pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-emdomics |
shpc-registry automated BioContainers addition for bioconductor-emdomics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-empiricalbrownsmethod |
shpc-registry automated BioContainers addition for bioconductor-empiricalbrownsmethod |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-emtdata |
shpc-registry automated BioContainers addition for bioconductor-emtdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-encodexplorer |
shpc-registry automated BioContainers addition for bioconductor-encodexplorer |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-encodexplorerdata |
shpc-registry automated BioContainers addition for bioconductor-encodexplorerdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-enhancedvolcano |
shpc-registry automated BioContainers addition for bioconductor-enhancedvolcano |
projsync, invgeod, invproj, projinfo, cct, gie, cs2cs, geod, proj, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-enhancerhomologsearch |
shpc-registry automated BioContainers addition for bioconductor-enhancerhomologsearch |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-enmcb |
shpc-registry automated BioContainers addition for bioconductor-enmcb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-enmix |
shpc-registry automated BioContainers addition for bioconductor-enmix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-enrichedheatmap |
shpc-registry automated BioContainers addition for bioconductor-enrichedheatmap |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-enrichmentbrowser |
shpc-registry automated BioContainers addition for bioconductor-enrichmentbrowser |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-enrichplot |
shpc-registry automated BioContainers addition for bioconductor-enrichplot |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-enrichtf |
shpc-registry automated BioContainers addition for bioconductor-enrichtf |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-enrichviewnet |
singularity registry hpc automated addition for bioconductor-enrichviewnet |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, curve_keygen, jpackage, hb-info, cups-config, ippeveprinter, ipptool, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ensdb.hsapiens.v75 |
shpc-registry automated BioContainers addition for bioconductor-ensdb.hsapiens.v75 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ensdb.hsapiens.v79 |
shpc-registry automated BioContainers addition for bioconductor-ensdb.hsapiens.v79 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ensdb.hsapiens.v86 |
shpc-registry automated BioContainers addition for bioconductor-ensdb.hsapiens.v86 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ensdb.mmusculus.v75 |
shpc-registry automated BioContainers addition for bioconductor-ensdb.mmusculus.v75 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ensdb.mmusculus.v79 |
shpc-registry automated BioContainers addition for bioconductor-ensdb.mmusculus.v79 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ensdb.rnorvegicus.v75 |
shpc-registry automated BioContainers addition for bioconductor-ensdb.rnorvegicus.v75 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ensdb.rnorvegicus.v79 |
shpc-registry automated BioContainers addition for bioconductor-ensdb.rnorvegicus.v79 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ensembldb |
shpc-registry automated BioContainers addition for bioconductor-ensembldb |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ensemblvep |
shpc-registry automated BioContainers addition for bioconductor-ensemblvep |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-envisionquery |
shpc-registry automated BioContainers addition for bioconductor-envisionquery |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epialleler |
shpc-registry automated BioContainers addition for bioconductor-epialleler |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-epicompare |
singularity registry hpc automated addition for bioconductor-epicompare |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, pandoc, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epidecoder |
shpc-registry automated BioContainers addition for bioconductor-epidecoder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-epidish |
shpc-registry automated BioContainers addition for bioconductor-epidish |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epigenomix |
shpc-registry automated BioContainers addition for bioconductor-epigenomix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-epigrahmm |
shpc-registry automated BioContainers addition for bioconductor-epigrahmm |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epihet |
shpc-registry automated BioContainers addition for bioconductor-epihet |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epimix.data |
singularity registry hpc automated addition for bioconductor-epimix.data |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epimutacionsdata |
singularity registry hpc automated addition for bioconductor-epimutacionsdata |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epinem |
shpc-registry automated BioContainers addition for bioconductor-epinem |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-epistack |
shpc-registry automated BioContainers addition for bioconductor-epistack |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-epistasisga |
singularity registry hpc automated addition for bioconductor-epistasisga |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epitxdb.hs.hg38 |
shpc-registry automated BioContainers addition for bioconductor-epitxdb.hs.hg38 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-epitxdb |
shpc-registry automated BioContainers addition for bioconductor-epitxdb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-epitxdb.mm.mm10 |
shpc-registry automated BioContainers addition for bioconductor-epitxdb.mm.mm10 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-epitxdb.sc.saccer3 |
shpc-registry automated BioContainers addition for bioconductor-epitxdb.sc.saccer3 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-epivizr |
shpc-registry automated BioContainers addition for bioconductor-epivizr |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epivizrchart |
shpc-registry automated BioContainers addition for bioconductor-epivizrchart |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epivizrdata |
shpc-registry automated BioContainers addition for bioconductor-epivizrdata |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epivizrserver |
shpc-registry automated BioContainers addition for bioconductor-epivizrserver |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epivizrstandalone |
shpc-registry automated BioContainers addition for bioconductor-epivizrstandalone |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-erccdashboard |
shpc-registry automated BioContainers addition for bioconductor-erccdashboard |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-erma |
shpc-registry automated BioContainers addition for bioconductor-erma |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-erssa |
shpc-registry automated BioContainers addition for bioconductor-erssa |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-esatac |
shpc-registry automated BioContainers addition for bioconductor-esatac |
pandoc-citeproc, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj |
|
GITHUB
|
quay.io/biocontainers/bioconductor-escape |
shpc-registry automated BioContainers addition for bioconductor-escape |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-escher |
singularity registry hpc automated addition for bioconductor-escher |
git2, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, hb-info, dvipdf, eps2eps, gs, gsbj, gsdj |
|
GITHUB
|
quay.io/biocontainers/bioconductor-esetvis |
shpc-registry automated BioContainers addition for bioconductor-esetvis |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-estrogen |
shpc-registry automated BioContainers addition for bioconductor-estrogen |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-etec16s |
shpc-registry automated BioContainers addition for bioconductor-etec16s |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-eudysbiome |
shpc-registry automated BioContainers addition for bioconductor-eudysbiome |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-eupathdb |
shpc-registry automated BioContainers addition for bioconductor-eupathdb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-evaluomer |
shpc-registry automated BioContainers addition for bioconductor-evaluomer |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-eventpointer |
shpc-registry automated BioContainers addition for bioconductor-eventpointer |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ewce |
shpc-registry automated BioContainers addition for bioconductor-ewce |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ewcedata |
shpc-registry automated BioContainers addition for bioconductor-ewcedata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-excluderanges |
shpc-registry automated BioContainers addition for bioconductor-excluderanges |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-excluster |
shpc-registry automated BioContainers addition for bioconductor-excluster |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-eximir |
shpc-registry automated BioContainers addition for bioconductor-eximir |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-exomecopy |
shpc-registry automated BioContainers addition for bioconductor-exomecopy |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-exomepeak |
shpc-registry automated BioContainers addition for bioconductor-exomepeak |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-exomepeak2 |
shpc-registry automated BioContainers addition for bioconductor-exomepeak2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-experimenthub |
shpc-registry automated BioContainers addition for bioconductor-experimenthub |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-experimenthubdata |
shpc-registry automated BioContainers addition for bioconductor-experimenthubdata |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-experimentsubset |
shpc-registry automated BioContainers addition for bioconductor-experimentsubset |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-explorase |
shpc-registry automated BioContainers addition for bioconductor-explorase |
ggobi, gtk-builder-convert, gtk-demo, gtk-query-immodules-2.0, gtk-update-icon-cache, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-exploremodelmatrix |
shpc-registry automated BioContainers addition for bioconductor-exploremodelmatrix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-expressionatlas |
shpc-registry automated BioContainers addition for bioconductor-expressionatlas |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-expressionnormalizationworkflow |
shpc-registry automated BioContainers addition for bioconductor-expressionnormalizationworkflow |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-expressionview |
shpc-registry automated BioContainers addition for bioconductor-expressionview |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-extrachips |
singularity registry hpc automated addition for bioconductor-extrachips |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-faahko |
shpc-registry automated BioContainers addition for bioconductor-faahko |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fabia |
shpc-registry automated BioContainers addition for bioconductor-fabia |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fabiadata |
shpc-registry automated BioContainers addition for bioconductor-fabiadata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-facopy.annot |
shpc-registry automated BioContainers addition for bioconductor-facopy.annot |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-facsdorit |
shpc-registry automated BioContainers addition for bioconductor-facsdorit |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-factdesign |
shpc-registry automated BioContainers addition for bioconductor-factdesign |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-factr |
singularity registry hpc automated addition for bioconductor-factr |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-famagg |
shpc-registry automated BioContainers addition for bioconductor-famagg |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-famat |
shpc-registry automated BioContainers addition for bioconductor-famat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fantom3and4cage |
shpc-registry automated BioContainers addition for bioconductor-fantom3and4cage |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-farms |
shpc-registry automated BioContainers addition for bioconductor-farms |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fastliquidassociation |
shpc-registry automated BioContainers addition for bioconductor-fastliquidassociation |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fastqcleaner |
shpc-registry automated BioContainers addition for bioconductor-fastqcleaner |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fastreer |
singularity registry hpc automated addition for bioconductor-fastreer |
jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap, jps |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fastseg |
shpc-registry automated BioContainers addition for bioconductor-fastseg |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fcbf |
shpc-registry automated BioContainers addition for bioconductor-fcbf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fccac |
shpc-registry automated BioContainers addition for bioconductor-fccac |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fci |
shpc-registry automated BioContainers addition for bioconductor-fci |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fcoex |
shpc-registry automated BioContainers addition for bioconductor-fcoex |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fcscan |
shpc-registry automated BioContainers addition for bioconductor-fcscan |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fdb.fantom4.promoters.hg19 |
shpc-registry automated BioContainers addition for bioconductor-fdb.fantom4.promoters.hg19 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fdb.infiniummethylation.hg18 |
shpc-registry automated BioContainers addition for bioconductor-fdb.infiniummethylation.hg18 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fdb.infiniummethylation.hg19 |
shpc-registry automated BioContainers addition for bioconductor-fdb.infiniummethylation.hg19 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fdb.ucsc.snp135common.hg19 |
shpc-registry automated BioContainers addition for bioconductor-fdb.ucsc.snp135common.hg19 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fdb.ucsc.snp137common.hg19 |
shpc-registry automated BioContainers addition for bioconductor-fdb.ucsc.snp137common.hg19 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fdb.ucsc.trnas |
shpc-registry automated BioContainers addition for bioconductor-fdb.ucsc.trnas |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fdrame |
shpc-registry automated BioContainers addition for bioconductor-fdrame |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-feast |
shpc-registry automated BioContainers addition for bioconductor-feast |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-featseekr |
singularity registry hpc automated addition for bioconductor-featseekr |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fedup |
shpc-registry automated BioContainers addition for bioconductor-fedup |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fella |
shpc-registry automated BioContainers addition for bioconductor-fella |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fem |
shpc-registry automated BioContainers addition for bioconductor-fem |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fenr |
singularity registry hpc automated addition for bioconductor-fenr |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ffpe |
shpc-registry automated BioContainers addition for bioconductor-ffpe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ffpeexampledata |
shpc-registry automated BioContainers addition for bioconductor-ffpeexampledata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fgga |
shpc-registry automated BioContainers addition for bioconductor-fgga |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fgnet |
shpc-registry automated BioContainers addition for bioconductor-fgnet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fgsea |
shpc-registry automated BioContainers addition for bioconductor-fgsea |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fibroeset |
shpc-registry automated BioContainers addition for bioconductor-fibroeset |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fieldeffectcrc |
shpc-registry automated BioContainers addition for bioconductor-fieldeffectcrc |
pandoc-server, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-filterffpe |
shpc-registry automated BioContainers addition for bioconductor-filterffpe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-findit2 |
singularity registry hpc automated addition for bioconductor-findit2 |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-findmyfriends |
shpc-registry automated BioContainers addition for bioconductor-findmyfriends |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fis |
shpc-registry automated BioContainers addition for bioconductor-fis |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fishalyser |
shpc-registry automated BioContainers addition for bioconductor-fishalyser |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fishpond |
shpc-registry automated BioContainers addition for bioconductor-fishpond |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fission |
shpc-registry automated BioContainers addition for bioconductor-fission |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fitcons.ucsc.hg19 |
shpc-registry automated BioContainers addition for bioconductor-fitcons.ucsc.hg19 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fithic |
shpc-registry automated BioContainers addition for bioconductor-fithic |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flagme |
shpc-registry automated BioContainers addition for bioconductor-flagme |
zipcmp, zipmerge, ziptool, gif2hdf, glpsol, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flames |
shpc-registry automated BioContainers addition for bioconductor-flames |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fletcher2013a |
shpc-registry automated BioContainers addition for bioconductor-fletcher2013a |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fletcher2013b |
shpc-registry automated BioContainers addition for bioconductor-fletcher2013b |
glpsol, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flipflop |
shpc-registry automated BioContainers addition for bioconductor-flipflop |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowai |
shpc-registry automated BioContainers addition for bioconductor-flowai |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowbeads |
shpc-registry automated BioContainers addition for bioconductor-flowbeads |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowbin |
shpc-registry automated BioContainers addition for bioconductor-flowbin |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowcatchr |
shpc-registry automated BioContainers addition for bioconductor-flowcatchr |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowchic |
shpc-registry automated BioContainers addition for bioconductor-flowchic |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowcl |
shpc-registry automated BioContainers addition for bioconductor-flowcl |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowclean |
shpc-registry automated BioContainers addition for bioconductor-flowclean |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowclust |
shpc-registry automated BioContainers addition for bioconductor-flowclust |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowcore |
shpc-registry automated BioContainers addition for bioconductor-flowcore |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowcut |
shpc-registry automated BioContainers addition for bioconductor-flowcut |
geosop, geos-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowcybar |
shpc-registry automated BioContainers addition for bioconductor-flowcybar |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowdensity |
shpc-registry automated BioContainers addition for bioconductor-flowdensity |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowfit |
shpc-registry automated BioContainers addition for bioconductor-flowfit |
mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, mpifort, mpic++, mpicc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowfitexampledata |
shpc-registry automated BioContainers addition for bioconductor-flowfitexampledata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowfp |
shpc-registry automated BioContainers addition for bioconductor-flowfp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowgate |
singularity registry hpc automated addition for bioconductor-flowgate |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowgraph |
shpc-registry automated BioContainers addition for bioconductor-flowgraph |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowmap |
shpc-registry automated BioContainers addition for bioconductor-flowmap |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowmatch |
shpc-registry automated BioContainers addition for bioconductor-flowmatch |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowmeans |
shpc-registry automated BioContainers addition for bioconductor-flowmeans |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowmerge |
shpc-registry automated BioContainers addition for bioconductor-flowmerge |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowpeaks |
shpc-registry automated BioContainers addition for bioconductor-flowpeaks |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowploidy |
shpc-registry automated BioContainers addition for bioconductor-flowploidy |
pandoc-citeproc, pandoc, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowploidydata |
shpc-registry automated BioContainers addition for bioconductor-flowploidydata |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowplots |
shpc-registry automated BioContainers addition for bioconductor-flowplots |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowq |
shpc-registry automated BioContainers addition for bioconductor-flowq |
-pkg-config, croco-0.6-config, csslint-0.6, x86_64-unknown-linux-gnu-pkg-config, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, gifecho, gifinto, Magick++-config, MagickCore-config, MagickWand-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowqb |
shpc-registry automated BioContainers addition for bioconductor-flowqb |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowqbdata |
shpc-registry automated BioContainers addition for bioconductor-flowqbdata |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowrepositoryr |
shpc-registry automated BioContainers addition for bioconductor-flowrepositoryr |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowsom |
shpc-registry automated BioContainers addition for bioconductor-flowsom |
glpsol, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowsorted.blood.450k |
shpc-registry automated BioContainers addition for bioconductor-flowsorted.blood.450k |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowsorted.blood.epic |
shpc-registry automated BioContainers addition for bioconductor-flowsorted.blood.epic |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowsorted.cordblood.450k |
shpc-registry automated BioContainers addition for bioconductor-flowsorted.cordblood.450k |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowsorted.cordbloodcombined.450k |
shpc-registry automated BioContainers addition for bioconductor-flowsorted.cordbloodcombined.450k |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowsorted.cordbloodnorway.450k |
shpc-registry automated BioContainers addition for bioconductor-flowsorted.cordbloodnorway.450k |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowsorted.dlpfc.450k |
shpc-registry automated BioContainers addition for bioconductor-flowsorted.dlpfc.450k |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowspecs |
shpc-registry automated BioContainers addition for bioconductor-flowspecs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowspy |
shpc-registry automated BioContainers addition for bioconductor-flowspy |
pandoc, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowstats |
shpc-registry automated BioContainers addition for bioconductor-flowstats |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowtime |
shpc-registry automated BioContainers addition for bioconductor-flowtime |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowtrans |
shpc-registry automated BioContainers addition for bioconductor-flowtrans |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowtype |
shpc-registry automated BioContainers addition for bioconductor-flowtype |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowutils |
shpc-registry automated BioContainers addition for bioconductor-flowutils |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowviz |
shpc-registry automated BioContainers addition for bioconductor-flowviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowvs |
shpc-registry automated BioContainers addition for bioconductor-flowvs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowworkspace |
shpc-registry automated BioContainers addition for bioconductor-flowworkspace |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowworkspacedata |
shpc-registry automated BioContainers addition for bioconductor-flowworkspacedata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fly.db0 |
shpc-registry automated BioContainers addition for bioconductor-fly.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fmcsr |
shpc-registry automated BioContainers addition for bioconductor-fmcsr |
rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fmrs |
shpc-registry automated BioContainers addition for bioconductor-fmrs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fobitools |
shpc-registry automated BioContainers addition for bioconductor-fobitools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-focalcall |
shpc-registry automated BioContainers addition for bioconductor-focalcall |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-foldgo |
shpc-registry automated BioContainers addition for bioconductor-foldgo |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fourcseq |
shpc-registry automated BioContainers addition for bioconductor-fourcseq |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fourdndata |
singularity registry hpc automated addition for bioconductor-fourdndata |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fraser |
shpc-registry automated BioContainers addition for bioconductor-fraser |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-frenchfish |
shpc-registry automated BioContainers addition for bioconductor-frenchfish |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-frgepistasis |
shpc-registry automated BioContainers addition for bioconductor-frgepistasis |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-frma |
shpc-registry automated BioContainers addition for bioconductor-frma |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-frmaexampledata |
shpc-registry automated BioContainers addition for bioconductor-frmaexampledata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-frmatools |
shpc-registry automated BioContainers addition for bioconductor-frmatools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fscanr |
shpc-registry automated BioContainers addition for bioconductor-fscanr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-funchip |
shpc-registry automated BioContainers addition for bioconductor-funchip |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-funcisnp.data |
shpc-registry automated BioContainers addition for bioconductor-funcisnp.data |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-funcisnp |
shpc-registry automated BioContainers addition for bioconductor-funcisnp |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-funtoonorm |
shpc-registry automated BioContainers addition for bioconductor-funtoonorm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-furrowseg |
shpc-registry automated BioContainers addition for bioconductor-furrowseg |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fusesom |
singularity registry hpc automated addition for bioconductor-fusesom |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ga4ghclient |
shpc-registry automated BioContainers addition for bioconductor-ga4ghclient |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ga4ghshiny |
shpc-registry automated BioContainers addition for bioconductor-ga4ghshiny |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gaga |
shpc-registry automated BioContainers addition for bioconductor-gaga |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gage |
shpc-registry automated BioContainers addition for bioconductor-gage |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gagedata |
shpc-registry automated BioContainers addition for bioconductor-gagedata |
tclsh8.5, wish8.5, ncurses5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gaggle |
shpc-registry automated BioContainers addition for bioconductor-gaggle |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gaia |
shpc-registry automated BioContainers addition for bioconductor-gaia |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gapgom |
shpc-registry automated BioContainers addition for bioconductor-gapgom |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gaprediction |
shpc-registry automated BioContainers addition for bioconductor-gaprediction |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-garfield |
shpc-registry automated BioContainers addition for bioconductor-garfield |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gars |
shpc-registry automated BioContainers addition for bioconductor-gars |
extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gaschyhs |
shpc-registry automated BioContainers addition for bioconductor-gaschyhs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gatefinder |
shpc-registry automated BioContainers addition for bioconductor-gatefinder |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gatingmldata |
shpc-registry automated BioContainers addition for bioconductor-gatingmldata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gatom |
singularity registry hpc automated addition for bioconductor-gatom |
pandoc-lua, x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, pandoc-server, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gbscleanr |
singularity registry hpc automated addition for bioconductor-gbscleanr |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gcapc |
shpc-registry automated BioContainers addition for bioconductor-gcapc |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gcatest |
shpc-registry automated BioContainers addition for bioconductor-gcatest |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gcmap |
shpc-registry automated BioContainers addition for bioconductor-gcmap |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gcmapweb |
shpc-registry automated BioContainers addition for bioconductor-gcmapweb |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gcrisprtools |
shpc-registry automated BioContainers addition for bioconductor-gcrisprtools |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gcrma |
shpc-registry automated BioContainers addition for bioconductor-gcrma |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gcsconnection |
shpc-registry automated BioContainers addition for bioconductor-gcsconnection |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gcsfilesystem |
shpc-registry automated BioContainers addition for bioconductor-gcsfilesystem |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gcspikelite |
shpc-registry automated BioContainers addition for bioconductor-gcspikelite |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gcsscore |
shpc-registry automated BioContainers addition for bioconductor-gcsscore |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gdcrnatools |
shpc-registry automated BioContainers addition for bioconductor-gdcrnatools |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gdnainrnaseqdata |
singularity registry hpc automated addition for bioconductor-gdnainrnaseqdata |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gdnax |
singularity registry hpc automated addition for bioconductor-gdnax |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gdrcore |
singularity registry hpc automated addition for bioconductor-gdrcore |
protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gdrimport |
singularity registry hpc automated addition for bioconductor-gdrimport |
protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gdrstyle |
singularity registry hpc automated addition for bioconductor-gdrstyle |
git2, pcre2posix_test, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gdrtestdata |
singularity registry hpc automated addition for bioconductor-gdrtestdata |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gdrutils |
singularity registry hpc automated addition for bioconductor-gdrutils |
protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gdsarray |
shpc-registry automated BioContainers addition for bioconductor-gdsarray |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gdsfmt |
shpc-registry automated BioContainers addition for bioconductor-gdsfmt |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geecc |
shpc-registry automated BioContainers addition for bioconductor-geecc |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gem |
shpc-registry automated BioContainers addition for bioconductor-gem |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gemini |
shpc-registry automated BioContainers addition for bioconductor-gemini |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gemma.r |
singularity registry hpc automated addition for bioconductor-gemma.r |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genarise |
shpc-registry automated BioContainers addition for bioconductor-genarise |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genbankr |
shpc-registry automated BioContainers addition for bioconductor-genbankr |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneaccord |
shpc-registry automated BioContainers addition for bioconductor-geneaccord |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneanswers |
shpc-registry automated BioContainers addition for bioconductor-geneanswers |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneattribution |
shpc-registry automated BioContainers addition for bioconductor-geneattribution |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genebreak |
shpc-registry automated BioContainers addition for bioconductor-genebreak |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneclassifiers |
shpc-registry automated BioContainers addition for bioconductor-geneclassifiers |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneexpressionsignature |
shpc-registry automated BioContainers addition for bioconductor-geneexpressionsignature |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genefilter |
shpc-registry automated BioContainers addition for bioconductor-genefilter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genefu |
shpc-registry automated BioContainers addition for bioconductor-genefu |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genega |
shpc-registry automated BioContainers addition for bioconductor-genega |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genegeneinter |
shpc-registry automated BioContainers addition for bioconductor-genegeneinter |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genelendatabase |
shpc-registry automated BioContainers addition for bioconductor-genelendatabase |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genemeta |
shpc-registry automated BioContainers addition for bioconductor-genemeta |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genenetworkbuilder |
shpc-registry automated BioContainers addition for bioconductor-genenetworkbuilder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneoverlap |
shpc-registry automated BioContainers addition for bioconductor-geneoverlap |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneplast.data |
shpc-registry automated BioContainers addition for bioconductor-geneplast.data |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneplast.data.string.v91 |
shpc-registry automated BioContainers addition for bioconductor-geneplast.data.string.v91 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneplast |
shpc-registry automated BioContainers addition for bioconductor-geneplast |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneplotter |
shpc-registry automated BioContainers addition for bioconductor-geneplotter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-generecommender |
shpc-registry automated BioContainers addition for bioconductor-generecommender |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-generegionscan |
shpc-registry automated BioContainers addition for bioconductor-generegionscan |
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GITHUB
|
quay.io/biocontainers/bioconductor-generxcluster |
shpc-registry automated BioContainers addition for bioconductor-generxcluster |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-geneselectmmd |
shpc-registry automated BioContainers addition for bioconductor-geneselectmmd |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneselector |
shpc-registry automated BioContainers addition for bioconductor-geneselector |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genesis |
shpc-registry automated BioContainers addition for bioconductor-genesis |
glpsol, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genestructuretools |
shpc-registry automated BioContainers addition for bioconductor-genestructuretools |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genesummary |
shpc-registry automated BioContainers addition for bioconductor-genesummary |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genetclassifier |
shpc-registry automated BioContainers addition for bioconductor-genetclassifier |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneticsdesign |
shpc-registry automated BioContainers addition for bioconductor-geneticsdesign |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneticsped |
shpc-registry automated BioContainers addition for bioconductor-geneticsped |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genetonic |
shpc-registry automated BioContainers addition for bioconductor-genetonic |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genextender |
shpc-registry automated BioContainers addition for bioconductor-genextender |
pandoc-citeproc, pandoc, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genie3 |
shpc-registry automated BioContainers addition for bioconductor-genie3 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genocn |
shpc-registry automated BioContainers addition for bioconductor-genocn |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-genogam |
shpc-registry automated BioContainers addition for bioconductor-genogam |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomation |
shpc-registry automated BioContainers addition for bioconductor-genomation |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomationdata |
shpc-registry automated BioContainers addition for bioconductor-genomationdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomautomorphism |
singularity registry hpc automated addition for bioconductor-genomautomorphism |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomegraphs |
shpc-registry automated BioContainers addition for bioconductor-genomegraphs |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomeinfodb |
shpc-registry automated BioContainers addition for bioconductor-genomeinfodb |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomeinfodbdata |
shpc-registry automated BioContainers addition for bioconductor-genomeinfodbdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomeintervals |
shpc-registry automated BioContainers addition for bioconductor-genomeintervals |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-genomes |
shpc-registry automated BioContainers addition for bioconductor-genomes |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-genomewidesnp5crlmm |
shpc-registry automated BioContainers addition for bioconductor-genomewidesnp5crlmm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomewidesnp6crlmm |
shpc-registry automated BioContainers addition for bioconductor-genomewidesnp6crlmm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicalignments |
shpc-registry automated BioContainers addition for bioconductor-genomicalignments |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicdatacommons |
shpc-registry automated BioContainers addition for bioconductor-genomicdatacommons |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicdistributions |
shpc-registry automated BioContainers addition for bioconductor-genomicdistributions |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicdistributionsdata |
shpc-registry automated BioContainers addition for bioconductor-genomicdistributionsdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicfeatures |
shpc-registry automated BioContainers addition for bioconductor-genomicfeatures |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicfiles |
shpc-registry automated BioContainers addition for bioconductor-genomicfiles |
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GITHUB
|
quay.io/biocontainers/bioconductor-genomicinstability |
shpc-registry automated BioContainers addition for bioconductor-genomicinstability |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicinteractionnodes |
singularity registry hpc automated addition for bioconductor-genomicinteractionnodes |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicinteractions |
shpc-registry automated BioContainers addition for bioconductor-genomicinteractions |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicozone |
shpc-registry automated BioContainers addition for bioconductor-genomicozone |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicplot |
singularity registry hpc automated addition for bioconductor-genomicplot |
protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicranges |
shpc-registry automated BioContainers addition for bioconductor-genomicranges |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicscores |
shpc-registry automated BioContainers addition for bioconductor-genomicscores |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicstate |
shpc-registry automated BioContainers addition for bioconductor-genomicstate |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicsupersignature |
shpc-registry automated BioContainers addition for bioconductor-genomicsupersignature |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomictuples |
shpc-registry automated BioContainers addition for bioconductor-genomictuples |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genominator |
shpc-registry automated BioContainers addition for bioconductor-genominator |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genoset |
shpc-registry automated BioContainers addition for bioconductor-genoset |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genotypeeval |
shpc-registry automated BioContainers addition for bioconductor-genotypeeval |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genphen |
shpc-registry automated BioContainers addition for bioconductor-genphen |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genproseq |
singularity registry hpc automated addition for bioconductor-genproseq |
git2_cli, jpackage, cups-config, ippeveprinter, ipptool, glpsol, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genrank |
shpc-registry automated BioContainers addition for bioconductor-genrank |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genvisr |
shpc-registry automated BioContainers addition for bioconductor-genvisr |
my_print_defaults, mysql_config, perror, wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-geodiff |
shpc-registry automated BioContainers addition for bioconductor-geodiff |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-geoexplorer |
shpc-registry automated BioContainers addition for bioconductor-geoexplorer |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-geofastq |
shpc-registry automated BioContainers addition for bioconductor-geofastq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geometadb |
shpc-registry automated BioContainers addition for bioconductor-geometadb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geomxtools |
shpc-registry automated BioContainers addition for bioconductor-geomxtools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geoquery |
shpc-registry automated BioContainers addition for bioconductor-geoquery |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geosubmission |
shpc-registry automated BioContainers addition for bioconductor-geosubmission |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geotcgadata |
singularity registry hpc automated addition for bioconductor-geotcgadata |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gep2pep |
shpc-registry automated BioContainers addition for bioconductor-gep2pep |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gesper |
shpc-registry automated BioContainers addition for bioconductor-gesper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-getdee2 |
shpc-registry automated BioContainers addition for bioconductor-getdee2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geuvadistranscriptexpr |
shpc-registry automated BioContainers addition for bioconductor-geuvadistranscriptexpr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geuvpack |
shpc-registry automated BioContainers addition for bioconductor-geuvpack |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-geuvstore2 |
shpc-registry automated BioContainers addition for bioconductor-geuvstore2 |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-geva |
shpc-registry automated BioContainers addition for bioconductor-geva |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gewist |
shpc-registry automated BioContainers addition for bioconductor-gewist |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gg4way |
singularity registry hpc automated addition for bioconductor-gg4way |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggbase |
shpc-registry automated BioContainers addition for bioconductor-ggbase |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggbio |
shpc-registry automated BioContainers addition for bioconductor-ggbio |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggcyto |
shpc-registry automated BioContainers addition for bioconductor-ggcyto |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggdata |
shpc-registry automated BioContainers addition for bioconductor-ggdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gghumanmethcancerpanelv1.db |
shpc-registry automated BioContainers addition for bioconductor-gghumanmethcancerpanelv1.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggkegg |
singularity registry hpc automated addition for bioconductor-ggkegg |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, display, identify, import, magick, magick-script, mogrify, montage, convert, pkg-config, pkg-config.bin, stream, compare |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggmanh |
singularity registry hpc automated addition for bioconductor-ggmanh |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggmsa |
shpc-registry automated BioContainers addition for bioconductor-ggmsa |
projsync, invgeod, invproj, projinfo, cct, gie, cs2cs, geod, proj |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggpa |
shpc-registry automated BioContainers addition for bioconductor-ggpa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggsc |
singularity registry hpc automated addition for bioconductor-ggsc |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggseqalign |
singularity registry hpc automated addition for bioconductor-ggseqalign |
x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggspavis |
shpc-registry automated BioContainers addition for bioconductor-ggspavis |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggtools |
shpc-registry automated BioContainers addition for bioconductor-ggtools |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggtree |
shpc-registry automated BioContainers addition for bioconductor-ggtree |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggtreedendro |
singularity registry hpc automated addition for bioconductor-ggtreedendro |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggtreeextra |
shpc-registry automated BioContainers addition for bioconductor-ggtreeextra |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gigsea |
shpc-registry automated BioContainers addition for bioconductor-gigsea |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gigseadata |
shpc-registry automated BioContainers addition for bioconductor-gigseadata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-girafe |
shpc-registry automated BioContainers addition for bioconductor-girafe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gispa |
shpc-registry automated BioContainers addition for bioconductor-gispa |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-glad |
shpc-registry automated BioContainers addition for bioconductor-glad |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gladiatox |
shpc-registry automated BioContainers addition for bioconductor-gladiatox |
my_print_defaults, mysql_config, perror, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-glimma |
shpc-registry automated BioContainers addition for bioconductor-glimma |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-glmgampoi |
shpc-registry automated BioContainers addition for bioconductor-glmgampoi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-glmsparsenet |
shpc-registry automated BioContainers addition for bioconductor-glmsparsenet |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-globalancova |
shpc-registry automated BioContainers addition for bioconductor-globalancova |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-globalseq |
shpc-registry automated BioContainers addition for bioconductor-globalseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-globaltest |
shpc-registry automated BioContainers addition for bioconductor-globaltest |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gloscope |
singularity registry hpc automated addition for bioconductor-gloscope |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gmapr |
shpc-registry automated BioContainers addition for bioconductor-gmapr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gmicr |
shpc-registry automated BioContainers addition for bioconductor-gmicr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gmoviz |
shpc-registry automated BioContainers addition for bioconductor-gmoviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gmrp |
shpc-registry automated BioContainers addition for bioconductor-gmrp |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gnet2 |
shpc-registry automated BioContainers addition for bioconductor-gnet2 |
xgboost, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gnosis |
singularity registry hpc automated addition for bioconductor-gnosis |
protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-go.db |
shpc-registry automated BioContainers addition for bioconductor-go.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-goexpress |
shpc-registry automated BioContainers addition for bioconductor-goexpress |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gofuncr |
shpc-registry automated BioContainers addition for bioconductor-gofuncr |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gofunction |
shpc-registry automated BioContainers addition for bioconductor-gofunction |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-golubesets |
shpc-registry automated BioContainers addition for bioconductor-golubesets |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-googlegenomics |
shpc-registry automated BioContainers addition for bioconductor-googlegenomics |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gopro |
shpc-registry automated BioContainers addition for bioconductor-gopro |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-goprofiles |
shpc-registry automated BioContainers addition for bioconductor-goprofiles |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gosemsim |
shpc-registry automated BioContainers addition for bioconductor-gosemsim |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-goseq |
shpc-registry automated BioContainers addition for bioconductor-goseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gosim |
shpc-registry automated BioContainers addition for bioconductor-gosim |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gosorensen |
singularity registry hpc automated addition for bioconductor-gosorensen |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gostag |
shpc-registry automated BioContainers addition for bioconductor-gostag |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gostats |
shpc-registry automated BioContainers addition for bioconductor-gostats |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gosummaries |
shpc-registry automated BioContainers addition for bioconductor-gosummaries |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gothic |
shpc-registry automated BioContainers addition for bioconductor-gothic |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gotools |
shpc-registry automated BioContainers addition for bioconductor-gotools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gp53cdf |
shpc-registry automated BioContainers addition for bioconductor-gp53cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gpa |
shpc-registry automated BioContainers addition for bioconductor-gpa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gpaexample |
shpc-registry automated BioContainers addition for bioconductor-gpaexample |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gpart |
shpc-registry automated BioContainers addition for bioconductor-gpart |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gpls |
shpc-registry automated BioContainers addition for bioconductor-gpls |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gprege |
shpc-registry automated BioContainers addition for bioconductor-gprege |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gpumagic |
shpc-registry automated BioContainers addition for bioconductor-gpumagic |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gqtlbase |
shpc-registry automated BioContainers addition for bioconductor-gqtlbase |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gqtlstats |
shpc-registry automated BioContainers addition for bioconductor-gqtlstats |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gramm4r |
shpc-registry automated BioContainers addition for bioconductor-gramm4r |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-granie |
singularity registry hpc automated addition for bioconductor-granie |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-granulator |
shpc-registry automated BioContainers addition for bioconductor-granulator |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-graper |
shpc-registry automated BioContainers addition for bioconductor-graper |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-graph |
shpc-registry automated BioContainers addition for bioconductor-graph |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-graphalignment |
shpc-registry automated BioContainers addition for bioconductor-graphalignment |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-graphat |
shpc-registry automated BioContainers addition for bioconductor-graphat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-graphite |
shpc-registry automated BioContainers addition for bioconductor-graphite |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-graphpac |
shpc-registry automated BioContainers addition for bioconductor-graphpac |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-grasp2db |
shpc-registry automated BioContainers addition for bioconductor-grasp2db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-greengenes13.5mgdb |
shpc-registry automated BioContainers addition for bioconductor-greengenes13.5mgdb |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-grenits |
shpc-registry automated BioContainers addition for bioconductor-grenits |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-greylistchip |
shpc-registry automated BioContainers addition for bioconductor-greylistchip |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-grmetrics |
shpc-registry automated BioContainers addition for bioconductor-grmetrics |
idn2, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-grndata |
shpc-registry automated BioContainers addition for bioconductor-grndata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-grohmm |
shpc-registry automated BioContainers addition for bioconductor-grohmm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-grridge |
shpc-registry automated BioContainers addition for bioconductor-grridge |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gsalightning |
shpc-registry automated BioContainers addition for bioconductor-gsalightning |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gsar |
shpc-registry automated BioContainers addition for bioconductor-gsar |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gsbenchmark |
shpc-registry automated BioContainers addition for bioconductor-gsbenchmark |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gsca |
shpc-registry automated BioContainers addition for bioconductor-gsca |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gscreend |
shpc-registry automated BioContainers addition for bioconductor-gscreend |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gse103322 |
shpc-registry automated BioContainers addition for bioconductor-gse103322 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gse13015 |
shpc-registry automated BioContainers addition for bioconductor-gse13015 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gse159526 |
shpc-registry automated BioContainers addition for bioconductor-gse159526 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gse62944 |
shpc-registry automated BioContainers addition for bioconductor-gse62944 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gseabase |
shpc-registry automated BioContainers addition for bioconductor-gseabase |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gseabenchmarker |
shpc-registry automated BioContainers addition for bioconductor-gseabenchmarker |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gsealm |
shpc-registry automated BioContainers addition for bioconductor-gsealm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gseamining |
shpc-registry automated BioContainers addition for bioconductor-gseamining |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gsean |
shpc-registry automated BioContainers addition for bioconductor-gsean |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gsgalgor |
shpc-registry automated BioContainers addition for bioconductor-gsgalgor |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gskb |
shpc-registry automated BioContainers addition for bioconductor-gskb |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gsreg |
shpc-registry automated BioContainers addition for bioconductor-gsreg |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gsri |
shpc-registry automated BioContainers addition for bioconductor-gsri |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gsva |
shpc-registry automated BioContainers addition for bioconductor-gsva |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gsvadata |
shpc-registry automated BioContainers addition for bioconductor-gsvadata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gtrellis |
shpc-registry automated BioContainers addition for bioconductor-gtrellis |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-guideseq |
shpc-registry automated BioContainers addition for bioconductor-guideseq |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-guitar |
shpc-registry automated BioContainers addition for bioconductor-guitar |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gviz |
shpc-registry automated BioContainers addition for bioconductor-gviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gwas.bayes |
shpc-registry automated BioContainers addition for bioconductor-gwas.bayes |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gwascat |
shpc-registry automated BioContainers addition for bioconductor-gwascat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gwascatdata |
shpc-registry automated BioContainers addition for bioconductor-gwascatdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gwasdata |
shpc-registry automated BioContainers addition for bioconductor-gwasdata |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gwastools |
shpc-registry automated BioContainers addition for bioconductor-gwastools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gwasurvivr |
shpc-registry automated BioContainers addition for bioconductor-gwasurvivr |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gwena |
shpc-registry automated BioContainers addition for bioconductor-gwena |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gypsum |
singularity registry hpc automated addition for bioconductor-gypsum |
x86_64-conda-linux-gnu.cfg, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-h10kcod.db |
shpc-registry automated BioContainers addition for bioconductor-h10kcod.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-h20kcod.db |
shpc-registry automated BioContainers addition for bioconductor-h20kcod.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-h5vc |
shpc-registry automated BioContainers addition for bioconductor-h5vc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-h5vcdata |
shpc-registry automated BioContainers addition for bioconductor-h5vcdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hapfabia |
shpc-registry automated BioContainers addition for bioconductor-hapfabia |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hapmap100khind |
shpc-registry automated BioContainers addition for bioconductor-hapmap100khind |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hapmap100kxba |
shpc-registry automated BioContainers addition for bioconductor-hapmap100kxba |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hapmap370k |
shpc-registry automated BioContainers addition for bioconductor-hapmap370k |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hapmap500knsp |
shpc-registry automated BioContainers addition for bioconductor-hapmap500knsp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hapmap500ksty |
shpc-registry automated BioContainers addition for bioconductor-hapmap500ksty |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hapmapsnp5 |
shpc-registry automated BioContainers addition for bioconductor-hapmapsnp5 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hapmapsnp6 |
shpc-registry automated BioContainers addition for bioconductor-hapmapsnp6 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-harbchip |
shpc-registry automated BioContainers addition for bioconductor-harbchip |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-harman |
shpc-registry automated BioContainers addition for bioconductor-harman |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-harmandata |
shpc-registry automated BioContainers addition for bioconductor-harmandata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-harmonizedtcgadata |
shpc-registry automated BioContainers addition for bioconductor-harmonizedtcgadata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-harmonizr |
singularity registry hpc automated addition for bioconductor-harmonizr |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-harshlight |
shpc-registry automated BioContainers addition for bioconductor-harshlight |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hca |
shpc-registry automated BioContainers addition for bioconductor-hca |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hcabrowser |
shpc-registry automated BioContainers addition for bioconductor-hcabrowser |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hcadata |
shpc-registry automated BioContainers addition for bioconductor-hcadata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hcaexplorer |
shpc-registry automated BioContainers addition for bioconductor-hcaexplorer |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hcamatrixbrowser |
shpc-registry automated BioContainers addition for bioconductor-hcamatrixbrowser |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hcatonsildata |
singularity registry hpc automated addition for bioconductor-hcatonsildata |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, display, identify, import, magick, magick-script, mogrify, montage, convert, pkg-config, pkg-config.bin, stream, compare |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hcg110.db |
shpc-registry automated BioContainers addition for bioconductor-hcg110.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hcg110cdf |
shpc-registry automated BioContainers addition for bioconductor-hcg110cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hcg110probe |
shpc-registry automated BioContainers addition for bioconductor-hcg110probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hd2013sgi |
shpc-registry automated BioContainers addition for bioconductor-hd2013sgi |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hdcytodata |
shpc-registry automated BioContainers addition for bioconductor-hdcytodata |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hdf5array |
shpc-registry automated BioContainers addition for bioconductor-hdf5array |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hdo.db |
singularity registry hpc automated addition for bioconductor-hdo.db |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hdtd |
shpc-registry automated BioContainers addition for bioconductor-hdtd |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-healthycontrolspresencechecker |
singularity registry hpc automated addition for bioconductor-healthycontrolspresencechecker |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-healthyflowdata |
shpc-registry automated BioContainers addition for bioconductor-healthyflowdata |
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GITHUB
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quay.io/biocontainers/bioconductor-heatmaps |
shpc-registry automated BioContainers addition for bioconductor-heatmaps |
mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, mpifort, mpic++, mpicc |
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GITHUB
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quay.io/biocontainers/bioconductor-heatplus |
shpc-registry automated BioContainers addition for bioconductor-heatplus |
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GITHUB
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quay.io/biocontainers/bioconductor-heebodata |
shpc-registry automated BioContainers addition for bioconductor-heebodata |
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GITHUB
|
quay.io/biocontainers/bioconductor-helloranges |
shpc-registry automated BioContainers addition for bioconductor-helloranges |
wget, c89, c99 |
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GITHUB
|
quay.io/biocontainers/bioconductor-hellorangesdata |
shpc-registry automated BioContainers addition for bioconductor-hellorangesdata |
wget, c89, c99 |
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GITHUB
|
quay.io/biocontainers/bioconductor-help |
shpc-registry automated BioContainers addition for bioconductor-help |
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GITHUB
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quay.io/biocontainers/bioconductor-hem |
shpc-registry automated BioContainers addition for bioconductor-hem |
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GITHUB
|
quay.io/biocontainers/bioconductor-hermes |
singularity registry hpc automated addition for bioconductor-hermes |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/bioconductor-heron |
singularity registry hpc automated addition for bioconductor-heron |
bsdunzip, gdal_footprint, h5tools_test_utils, minigzip, minizip, protoc-24.4.0, sozip, h5fuse.sh, pg_amcheck, pcre2posix_test, gdal_create, pdfsig, bsdcat, bsdcpio, bsdtar, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pdfattach, pg_verifybackup, projsync, gdal-config, gdal_contour, gdal_grid, gdal_rasterize |
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GITHUB
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quay.io/biocontainers/bioconductor-herper |
shpc-registry automated BioContainers addition for bioconductor-herper |
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GITHUB
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quay.io/biocontainers/bioconductor-hgc |
shpc-registry automated BioContainers addition for bioconductor-hgc |
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GITHUB
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quay.io/biocontainers/bioconductor-hgfocus.db |
shpc-registry automated BioContainers addition for bioconductor-hgfocus.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hgfocuscdf |
shpc-registry automated BioContainers addition for bioconductor-hgfocuscdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgfocusprobe |
shpc-registry automated BioContainers addition for bioconductor-hgfocusprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133a.db |
shpc-registry automated BioContainers addition for bioconductor-hgu133a.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133a2.db |
shpc-registry automated BioContainers addition for bioconductor-hgu133a2.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133a2cdf |
shpc-registry automated BioContainers addition for bioconductor-hgu133a2cdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133a2frmavecs |
shpc-registry automated BioContainers addition for bioconductor-hgu133a2frmavecs |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133a2probe |
shpc-registry automated BioContainers addition for bioconductor-hgu133a2probe |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133abarcodevecs |
shpc-registry automated BioContainers addition for bioconductor-hgu133abarcodevecs |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133acdf |
shpc-registry automated BioContainers addition for bioconductor-hgu133acdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133afrmavecs |
shpc-registry automated BioContainers addition for bioconductor-hgu133afrmavecs |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133aprobe |
shpc-registry automated BioContainers addition for bioconductor-hgu133aprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133atagcdf |
shpc-registry automated BioContainers addition for bioconductor-hgu133atagcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133atagprobe |
shpc-registry automated BioContainers addition for bioconductor-hgu133atagprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133b.db |
shpc-registry automated BioContainers addition for bioconductor-hgu133b.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133bcdf |
shpc-registry automated BioContainers addition for bioconductor-hgu133bcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133bprobe |
shpc-registry automated BioContainers addition for bioconductor-hgu133bprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133plus2.db |
shpc-registry automated BioContainers addition for bioconductor-hgu133plus2.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133plus2barcodevecs |
shpc-registry automated BioContainers addition for bioconductor-hgu133plus2barcodevecs |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133plus2cdf |
shpc-registry automated BioContainers addition for bioconductor-hgu133plus2cdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133plus2cellscore |
shpc-registry automated BioContainers addition for bioconductor-hgu133plus2cellscore |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133plus2frmavecs |
shpc-registry automated BioContainers addition for bioconductor-hgu133plus2frmavecs |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133plus2probe |
shpc-registry automated BioContainers addition for bioconductor-hgu133plus2probe |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu219.db |
shpc-registry automated BioContainers addition for bioconductor-hgu219.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu219cdf |
shpc-registry automated BioContainers addition for bioconductor-hgu219cdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu219probe |
shpc-registry automated BioContainers addition for bioconductor-hgu219probe |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu2beta7 |
shpc-registry automated BioContainers addition for bioconductor-hgu2beta7 |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95a.db |
shpc-registry automated BioContainers addition for bioconductor-hgu95a.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95acdf |
shpc-registry automated BioContainers addition for bioconductor-hgu95acdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95aprobe |
shpc-registry automated BioContainers addition for bioconductor-hgu95aprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95av2.db |
shpc-registry automated BioContainers addition for bioconductor-hgu95av2.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95av2 |
shpc-registry automated BioContainers addition for bioconductor-hgu95av2 |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95av2cdf |
shpc-registry automated BioContainers addition for bioconductor-hgu95av2cdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95av2probe |
shpc-registry automated BioContainers addition for bioconductor-hgu95av2probe |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95b.db |
shpc-registry automated BioContainers addition for bioconductor-hgu95b.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95bcdf |
shpc-registry automated BioContainers addition for bioconductor-hgu95bcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95bprobe |
shpc-registry automated BioContainers addition for bioconductor-hgu95bprobe |
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GITHUB
|
quay.io/biocontainers/bioconductor-hgu95c.db |
shpc-registry automated BioContainers addition for bioconductor-hgu95c.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95ccdf |
shpc-registry automated BioContainers addition for bioconductor-hgu95ccdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95cprobe |
shpc-registry automated BioContainers addition for bioconductor-hgu95cprobe |
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GITHUB
|
quay.io/biocontainers/bioconductor-hgu95d.db |
shpc-registry automated BioContainers addition for bioconductor-hgu95d.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95dcdf |
shpc-registry automated BioContainers addition for bioconductor-hgu95dcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95dprobe |
shpc-registry automated BioContainers addition for bioconductor-hgu95dprobe |
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GITHUB
|
quay.io/biocontainers/bioconductor-hgu95e.db |
shpc-registry automated BioContainers addition for bioconductor-hgu95e.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95ecdf |
shpc-registry automated BioContainers addition for bioconductor-hgu95ecdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95eprobe |
shpc-registry automated BioContainers addition for bioconductor-hgu95eprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hguatlas13k.db |
shpc-registry automated BioContainers addition for bioconductor-hguatlas13k.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hgubeta7.db |
shpc-registry automated BioContainers addition for bioconductor-hgubeta7.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hgudkfz31.db |
shpc-registry automated BioContainers addition for bioconductor-hgudkfz31.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hgug4100a.db |
shpc-registry automated BioContainers addition for bioconductor-hgug4100a.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hgug4101a.db |
shpc-registry automated BioContainers addition for bioconductor-hgug4101a.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hgug4110b.db |
shpc-registry automated BioContainers addition for bioconductor-hgug4110b.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hgug4111a.db |
shpc-registry automated BioContainers addition for bioconductor-hgug4111a.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hgug4112a.db |
shpc-registry automated BioContainers addition for bioconductor-hgug4112a.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hgug4845a.db |
shpc-registry automated BioContainers addition for bioconductor-hgug4845a.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hguqiagenv3.db |
shpc-registry automated BioContainers addition for bioconductor-hguqiagenv3.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hi16cod.db |
shpc-registry automated BioContainers addition for bioconductor-hi16cod.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hiannotator |
shpc-registry automated BioContainers addition for bioconductor-hiannotator |
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GITHUB
|
quay.io/biocontainers/bioconductor-hibag |
shpc-registry automated BioContainers addition for bioconductor-hibag |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hibed |
singularity registry hpc automated addition for bioconductor-hibed |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
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quay.io/biocontainers/bioconductor-hicbricks |
shpc-registry automated BioContainers addition for bioconductor-hicbricks |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hiccompare |
shpc-registry automated BioContainers addition for bioconductor-hiccompare |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hicdatahumanimr90 |
shpc-registry automated BioContainers addition for bioconductor-hicdatahumanimr90 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hicdatalymphoblast |
shpc-registry automated BioContainers addition for bioconductor-hicdatalymphoblast |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hicdcplus |
shpc-registry automated BioContainers addition for bioconductor-hicdcplus |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hicdoc |
singularity registry hpc automated addition for bioconductor-hicdoc |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hicexperiment |
singularity registry hpc automated addition for bioconductor-hicexperiment |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hicontacts |
singularity registry hpc automated addition for bioconductor-hicontacts |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hicontactsdata |
singularity registry hpc automated addition for bioconductor-hicontactsdata |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hicool |
singularity registry hpc automated addition for bioconductor-hicool |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hicrep |
shpc-registry automated BioContainers addition for bioconductor-hicrep |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hicvenndiagram |
singularity registry hpc automated addition for bioconductor-hicvenndiagram |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hiergwas |
shpc-registry automated BioContainers addition for bioconductor-hiergwas |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hierinf |
shpc-registry automated BioContainers addition for bioconductor-hierinf |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-highlyreplicatedrnaseq |
shpc-registry automated BioContainers addition for bioconductor-highlyreplicatedrnaseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hiiragi2013 |
shpc-registry automated BioContainers addition for bioconductor-hiiragi2013 |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-hilbertcurve |
shpc-registry automated BioContainers addition for bioconductor-hilbertcurve |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hilbertvis |
shpc-registry automated BioContainers addition for bioconductor-hilbertvis |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hilda |
shpc-registry automated BioContainers addition for bioconductor-hilda |
jags |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hipathia |
shpc-registry automated BioContainers addition for bioconductor-hipathia |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hippo |
shpc-registry automated BioContainers addition for bioconductor-hippo |
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GITHUB
|
quay.io/biocontainers/bioconductor-hireadsprocessor |
shpc-registry automated BioContainers addition for bioconductor-hireadsprocessor |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hireewas |
shpc-registry automated BioContainers addition for bioconductor-hireewas |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hitc |
shpc-registry automated BioContainers addition for bioconductor-hitc |
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GITHUB
|
quay.io/biocontainers/bioconductor-hivcdnavantwout03 |
shpc-registry automated BioContainers addition for bioconductor-hivcdnavantwout03 |
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GITHUB
|
quay.io/biocontainers/bioconductor-hivprtplus2cdf |
shpc-registry automated BioContainers addition for bioconductor-hivprtplus2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hmdbquery |
shpc-registry automated BioContainers addition for bioconductor-hmdbquery |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hmmcopy |
shpc-registry automated BioContainers addition for bioconductor-hmmcopy |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hmp16sdata |
shpc-registry automated BioContainers addition for bioconductor-hmp16sdata |
pandoc-citeproc, pandoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hmp2data |
shpc-registry automated BioContainers addition for bioconductor-hmp2data |
pandoc-server, glpsol, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hmyrib36 |
shpc-registry automated BioContainers addition for bioconductor-hmyrib36 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-holofoodr |
singularity registry hpc automated addition for bioconductor-holofoodr |
x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hom.at.inp.db |
shpc-registry automated BioContainers addition for bioconductor-hom.at.inp.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hom.ce.inp.db |
shpc-registry automated BioContainers addition for bioconductor-hom.ce.inp.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hom.dm.inp.db |
shpc-registry automated BioContainers addition for bioconductor-hom.dm.inp.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hom.dr.inp.db |
shpc-registry automated BioContainers addition for bioconductor-hom.dr.inp.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hom.hs.inp.db |
shpc-registry automated BioContainers addition for bioconductor-hom.hs.inp.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hom.mm.inp.db |
shpc-registry automated BioContainers addition for bioconductor-hom.mm.inp.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hom.rn.inp.db |
shpc-registry automated BioContainers addition for bioconductor-hom.rn.inp.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
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quay.io/biocontainers/bioconductor-hom.sc.inp.db |
shpc-registry automated BioContainers addition for bioconductor-hom.sc.inp.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-homo.sapiens |
shpc-registry automated BioContainers addition for bioconductor-homo.sapiens |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hoodscanr |
singularity registry hpc automated addition for bioconductor-hoodscanr |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, display, identify, import, magick, magick-script, mogrify, montage, convert, pkg-config, pkg-config.bin, stream, compare |
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GITHUB
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quay.io/biocontainers/bioconductor-hopach |
shpc-registry automated BioContainers addition for bioconductor-hopach |
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GITHUB
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quay.io/biocontainers/bioconductor-hpaanalyze |
shpc-registry automated BioContainers addition for bioconductor-hpaanalyze |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hpannot |
shpc-registry automated BioContainers addition for bioconductor-hpannot |
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GITHUB
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quay.io/biocontainers/bioconductor-hpar |
shpc-registry automated BioContainers addition for bioconductor-hpar |
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GITHUB
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quay.io/biocontainers/bioconductor-hpastainr |
shpc-registry automated BioContainers addition for bioconductor-hpastainr |
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GITHUB
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quay.io/biocontainers/bioconductor-hpip |
shpc-registry automated BioContainers addition for bioconductor-hpip |
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GITHUB
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quay.io/biocontainers/bioconductor-hpo.db |
singularity registry hpc automated addition for bioconductor-hpo.db |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
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GITHUB
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quay.io/biocontainers/bioconductor-hs25kresogen.db |
shpc-registry automated BioContainers addition for bioconductor-hs25kresogen.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hs6ug171.db |
shpc-registry automated BioContainers addition for bioconductor-hs6ug171.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hsagilentdesign026652.db |
shpc-registry automated BioContainers addition for bioconductor-hsagilentdesign026652.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hsmmsinglecell |
shpc-registry automated BioContainers addition for bioconductor-hsmmsinglecell |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hspec |
shpc-registry automated BioContainers addition for bioconductor-hspec |
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GITHUB
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quay.io/biocontainers/bioconductor-hspeccdf |
shpc-registry automated BioContainers addition for bioconductor-hspeccdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hta20probeset.db |
shpc-registry automated BioContainers addition for bioconductor-hta20probeset.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hta20transcriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-hta20transcriptcluster.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133a.db |
shpc-registry automated BioContainers addition for bioconductor-hthgu133a.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133acdf |
shpc-registry automated BioContainers addition for bioconductor-hthgu133acdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133afrmavecs |
shpc-registry automated BioContainers addition for bioconductor-hthgu133afrmavecs |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133aprobe |
shpc-registry automated BioContainers addition for bioconductor-hthgu133aprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133b.db |
shpc-registry automated BioContainers addition for bioconductor-hthgu133b.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133bcdf |
shpc-registry automated BioContainers addition for bioconductor-hthgu133bcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133bprobe |
shpc-registry automated BioContainers addition for bioconductor-hthgu133bprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133plusa.db |
shpc-registry automated BioContainers addition for bioconductor-hthgu133plusa.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133plusb.db |
shpc-registry automated BioContainers addition for bioconductor-hthgu133plusb.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133pluspm.db |
shpc-registry automated BioContainers addition for bioconductor-hthgu133pluspm.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133pluspmcdf |
shpc-registry automated BioContainers addition for bioconductor-hthgu133pluspmcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133pluspmprobe |
shpc-registry automated BioContainers addition for bioconductor-hthgu133pluspmprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-htmg430a.db |
shpc-registry automated BioContainers addition for bioconductor-htmg430a.db |
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GITHUB
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quay.io/biocontainers/bioconductor-htmg430acdf |
shpc-registry automated BioContainers addition for bioconductor-htmg430acdf |
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GITHUB
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quay.io/biocontainers/bioconductor-htmg430aprobe |
shpc-registry automated BioContainers addition for bioconductor-htmg430aprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-htmg430b.db |
shpc-registry automated BioContainers addition for bioconductor-htmg430b.db |
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GITHUB
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quay.io/biocontainers/bioconductor-htmg430bcdf |
shpc-registry automated BioContainers addition for bioconductor-htmg430bcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-htmg430bprobe |
shpc-registry automated BioContainers addition for bioconductor-htmg430bprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-htmg430pm.db |
shpc-registry automated BioContainers addition for bioconductor-htmg430pm.db |
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GITHUB
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quay.io/biocontainers/bioconductor-htmg430pmcdf |
shpc-registry automated BioContainers addition for bioconductor-htmg430pmcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-htmg430pmprobe |
shpc-registry automated BioContainers addition for bioconductor-htmg430pmprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-htqpcr |
shpc-registry automated BioContainers addition for bioconductor-htqpcr |
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GITHUB
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quay.io/biocontainers/bioconductor-htrat230pm.db |
shpc-registry automated BioContainers addition for bioconductor-htrat230pm.db |
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GITHUB
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quay.io/biocontainers/bioconductor-htrat230pmcdf |
shpc-registry automated BioContainers addition for bioconductor-htrat230pmcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-htrat230pmprobe |
shpc-registry automated BioContainers addition for bioconductor-htrat230pmprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-htratfocus.db |
shpc-registry automated BioContainers addition for bioconductor-htratfocus.db |
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GITHUB
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quay.io/biocontainers/bioconductor-htratfocuscdf |
shpc-registry automated BioContainers addition for bioconductor-htratfocuscdf |
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GITHUB
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quay.io/biocontainers/bioconductor-htratfocusprobe |
shpc-registry automated BioContainers addition for bioconductor-htratfocusprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-htsanalyzer |
shpc-registry automated BioContainers addition for bioconductor-htsanalyzer |
gio-launch-desktop, c89, c99 |
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GITHUB
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quay.io/biocontainers/bioconductor-htseqgenie |
shpc-registry automated BioContainers addition for bioconductor-htseqgenie |
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GITHUB
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quay.io/biocontainers/bioconductor-htseqtools |
shpc-registry automated BioContainers addition for bioconductor-htseqtools |
gio-launch-desktop, c89, c99 |
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GITHUB
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quay.io/biocontainers/bioconductor-htsfilter |
shpc-registry automated BioContainers addition for bioconductor-htsfilter |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksuba.db |
shpc-registry automated BioContainers addition for bioconductor-hu35ksuba.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksubacdf |
shpc-registry automated BioContainers addition for bioconductor-hu35ksubacdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksubaprobe |
shpc-registry automated BioContainers addition for bioconductor-hu35ksubaprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksubb.db |
shpc-registry automated BioContainers addition for bioconductor-hu35ksubb.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksubbcdf |
shpc-registry automated BioContainers addition for bioconductor-hu35ksubbcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksubbprobe |
shpc-registry automated BioContainers addition for bioconductor-hu35ksubbprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksubc.db |
shpc-registry automated BioContainers addition for bioconductor-hu35ksubc.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksubccdf |
shpc-registry automated BioContainers addition for bioconductor-hu35ksubccdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksubcprobe |
shpc-registry automated BioContainers addition for bioconductor-hu35ksubcprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksubd.db |
shpc-registry automated BioContainers addition for bioconductor-hu35ksubd.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksubdcdf |
shpc-registry automated BioContainers addition for bioconductor-hu35ksubdcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksubdprobe |
shpc-registry automated BioContainers addition for bioconductor-hu35ksubdprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hu6800.db |
shpc-registry automated BioContainers addition for bioconductor-hu6800.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hu6800cdf |
shpc-registry automated BioContainers addition for bioconductor-hu6800cdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hu6800probe |
shpc-registry automated BioContainers addition for bioconductor-hu6800probe |
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GITHUB
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quay.io/biocontainers/bioconductor-hu6800subacdf |
shpc-registry automated BioContainers addition for bioconductor-hu6800subacdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hu6800subbcdf |
shpc-registry automated BioContainers addition for bioconductor-hu6800subbcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hu6800subccdf |
shpc-registry automated BioContainers addition for bioconductor-hu6800subccdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hu6800subdcdf |
shpc-registry automated BioContainers addition for bioconductor-hu6800subdcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hubpub |
shpc-registry automated BioContainers addition for bioconductor-hubpub |
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GITHUB
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quay.io/biocontainers/bioconductor-huex.1.0.st.v2frmavecs |
shpc-registry automated BioContainers addition for bioconductor-huex.1.0.st.v2frmavecs |
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GITHUB
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quay.io/biocontainers/bioconductor-huex10stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-huex10stprobeset.db |
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GITHUB
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quay.io/biocontainers/bioconductor-huex10sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-huex10sttranscriptcluster.db |
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GITHUB
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quay.io/biocontainers/bioconductor-huexexonprobesetlocation |
shpc-registry automated BioContainers addition for bioconductor-huexexonprobesetlocation |
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GITHUB
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quay.io/biocontainers/bioconductor-huexexonprobesetlocationhg18 |
shpc-registry automated BioContainers addition for bioconductor-huexexonprobesetlocationhg18 |
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GITHUB
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quay.io/biocontainers/bioconductor-huexexonprobesetlocationhg19 |
shpc-registry automated BioContainers addition for bioconductor-huexexonprobesetlocationhg19 |
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GITHUB
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quay.io/biocontainers/bioconductor-hugene.1.0.st.v1frmavecs |
shpc-registry automated BioContainers addition for bioconductor-hugene.1.0.st.v1frmavecs |
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GITHUB
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quay.io/biocontainers/bioconductor-hugene10stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-hugene10stprobeset.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hugene10sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-hugene10sttranscriptcluster.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hugene10stv1cdf |
shpc-registry automated BioContainers addition for bioconductor-hugene10stv1cdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hugene10stv1probe |
shpc-registry automated BioContainers addition for bioconductor-hugene10stv1probe |
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GITHUB
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quay.io/biocontainers/bioconductor-hugene11stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-hugene11stprobeset.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hugene11sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-hugene11sttranscriptcluster.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hugene20stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-hugene20stprobeset.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hugene20sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-hugene20sttranscriptcluster.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hugene21stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-hugene21stprobeset.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hugene21sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-hugene21sttranscriptcluster.db |
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GITHUB
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quay.io/biocontainers/bioconductor-human.db0 |
shpc-registry automated BioContainers addition for bioconductor-human.db0 |
gio-launch-desktop, c89, c99 |
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GITHUB
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quay.io/biocontainers/bioconductor-human1mduov3bcrlmm |
shpc-registry automated BioContainers addition for bioconductor-human1mduov3bcrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-human1mv1ccrlmm |
shpc-registry automated BioContainers addition for bioconductor-human1mv1ccrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-human370quadv3ccrlmm |
shpc-registry automated BioContainers addition for bioconductor-human370quadv3ccrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-human370v1ccrlmm |
shpc-registry automated BioContainers addition for bioconductor-human370v1ccrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-human550v3bcrlmm |
shpc-registry automated BioContainers addition for bioconductor-human550v3bcrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-human610quadv1bcrlmm |
shpc-registry automated BioContainers addition for bioconductor-human610quadv1bcrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-human650v3acrlmm |
shpc-registry automated BioContainers addition for bioconductor-human650v3acrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-human660quadv1acrlmm |
shpc-registry automated BioContainers addition for bioconductor-human660quadv1acrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-humanaffydata |
shpc-registry automated BioContainers addition for bioconductor-humanaffydata |
wget, c89, c99 |
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GITHUB
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quay.io/biocontainers/bioconductor-humanchrloc |
shpc-registry automated BioContainers addition for bioconductor-humanchrloc |
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GITHUB
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quay.io/biocontainers/bioconductor-humancytosnp12v2p1hcrlmm |
shpc-registry automated BioContainers addition for bioconductor-humancytosnp12v2p1hcrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-humanomni1quadv1bcrlmm |
shpc-registry automated BioContainers addition for bioconductor-humanomni1quadv1bcrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-humanomni25quadv1bcrlmm |
shpc-registry automated BioContainers addition for bioconductor-humanomni25quadv1bcrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-humanomni5quadv1bcrlmm |
shpc-registry automated BioContainers addition for bioconductor-humanomni5quadv1bcrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-humanomniexpress12v1bcrlmm |
shpc-registry automated BioContainers addition for bioconductor-humanomniexpress12v1bcrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-humanstemcell |
shpc-registry automated BioContainers addition for bioconductor-humanstemcell |
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GITHUB
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quay.io/biocontainers/bioconductor-humantranscriptomecompendium |
shpc-registry automated BioContainers addition for bioconductor-humantranscriptomecompendium |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hummingbird |
shpc-registry automated BioContainers addition for bioconductor-hummingbird |
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GITHUB
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quay.io/biocontainers/bioconductor-huo22.db |
shpc-registry automated BioContainers addition for bioconductor-huo22.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hwgcod.db |
shpc-registry automated BioContainers addition for bioconductor-hwgcod.db |
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GITHUB
|
quay.io/biocontainers/bioconductor-hybridexpress |
singularity registry hpc automated addition for bioconductor-hybridexpress |
x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
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quay.io/biocontainers/bioconductor-hybridmtest |
shpc-registry automated BioContainers addition for bioconductor-hybridmtest |
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GITHUB
|
quay.io/biocontainers/bioconductor-hyper |
shpc-registry automated BioContainers addition for bioconductor-hyper |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hyperdraw |
shpc-registry automated BioContainers addition for bioconductor-hyperdraw |
diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts |
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GITHUB
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quay.io/biocontainers/bioconductor-hypergraph |
shpc-registry automated BioContainers addition for bioconductor-hypergraph |
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GITHUB
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quay.io/biocontainers/bioconductor-iaseq |
shpc-registry automated BioContainers addition for bioconductor-iaseq |
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GITHUB
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quay.io/biocontainers/bioconductor-iasva |
shpc-registry automated BioContainers addition for bioconductor-iasva |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-ibbig |
shpc-registry automated BioContainers addition for bioconductor-ibbig |
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GITHUB
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quay.io/biocontainers/bioconductor-ibh |
shpc-registry automated BioContainers addition for bioconductor-ibh |
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GITHUB
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quay.io/biocontainers/bioconductor-ibmq |
shpc-registry automated BioContainers addition for bioconductor-ibmq |
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GITHUB
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quay.io/biocontainers/bioconductor-icare |
shpc-registry automated BioContainers addition for bioconductor-icare |
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GITHUB
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quay.io/biocontainers/bioconductor-icens |
shpc-registry automated BioContainers addition for bioconductor-icens |
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GITHUB
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quay.io/biocontainers/bioconductor-icetea |
shpc-registry automated BioContainers addition for bioconductor-icetea |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-icheck |
shpc-registry automated BioContainers addition for bioconductor-icheck |
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GITHUB
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quay.io/biocontainers/bioconductor-ichip |
shpc-registry automated BioContainers addition for bioconductor-ichip |
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GITHUB
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quay.io/biocontainers/bioconductor-iclusterplus |
shpc-registry automated BioContainers addition for bioconductor-iclusterplus |
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GITHUB
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quay.io/biocontainers/bioconductor-icnv |
shpc-registry automated BioContainers addition for bioconductor-icnv |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-icobra |
shpc-registry automated BioContainers addition for bioconductor-icobra |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ideal |
shpc-registry automated BioContainers addition for bioconductor-ideal |
pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ideoviz |
shpc-registry automated BioContainers addition for bioconductor-ideoviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-idiogram |
shpc-registry automated BioContainers addition for bioconductor-idiogram |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-idmappinganalysis |
shpc-registry automated BioContainers addition for bioconductor-idmappinganalysis |
extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/bioconductor-idmappingretrieval |
shpc-registry automated BioContainers addition for bioconductor-idmappingretrieval |
extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/bioconductor-idpr |
shpc-registry automated BioContainers addition for bioconductor-idpr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-idr2d |
shpc-registry automated BioContainers addition for bioconductor-idr2d |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ifaa |
singularity registry hpc automated addition for bioconductor-ifaa |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-igc |
shpc-registry automated BioContainers addition for bioconductor-igc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-iggeneusage |
shpc-registry automated BioContainers addition for bioconductor-iggeneusage |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-igvr |
shpc-registry automated BioContainers addition for bioconductor-igvr |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ihw |
shpc-registry automated BioContainers addition for bioconductor-ihw |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ihwpaper |
shpc-registry automated BioContainers addition for bioconductor-ihwpaper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illumina450probevariants.db |
shpc-registry automated BioContainers addition for bioconductor-illumina450probevariants.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminadatatestfiles |
shpc-registry automated BioContainers addition for bioconductor-illuminadatatestfiles |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminahumanmethylation27k.db |
shpc-registry automated BioContainers addition for bioconductor-illuminahumanmethylation27k.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminahumanmethylation450kprobe |
shpc-registry automated BioContainers addition for bioconductor-illuminahumanmethylation450kprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminahumanv1.db |
shpc-registry automated BioContainers addition for bioconductor-illuminahumanv1.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminahumanv2.db |
shpc-registry automated BioContainers addition for bioconductor-illuminahumanv2.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminahumanv2beadid.db |
shpc-registry automated BioContainers addition for bioconductor-illuminahumanv2beadid.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminahumanv3.db |
shpc-registry automated BioContainers addition for bioconductor-illuminahumanv3.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminahumanv4.db |
shpc-registry automated BioContainers addition for bioconductor-illuminahumanv4.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminahumanwgdaslv3.db |
shpc-registry automated BioContainers addition for bioconductor-illuminahumanwgdaslv3.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminahumanwgdaslv4.db |
shpc-registry automated BioContainers addition for bioconductor-illuminahumanwgdaslv4.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminaio |
shpc-registry automated BioContainers addition for bioconductor-illuminaio |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminamousev1.db |
shpc-registry automated BioContainers addition for bioconductor-illuminamousev1.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminamousev1p1.db |
shpc-registry automated BioContainers addition for bioconductor-illuminamousev1p1.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminamousev2.db |
shpc-registry automated BioContainers addition for bioconductor-illuminamousev2.db |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminaratv1.db |
shpc-registry automated BioContainers addition for bioconductor-illuminaratv1.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-iloreg |
shpc-registry automated BioContainers addition for bioconductor-iloreg |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-imagehts |
shpc-registry automated BioContainers addition for bioconductor-imagehts |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-imas |
shpc-registry automated BioContainers addition for bioconductor-imas |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-imcdatasets |
shpc-registry automated BioContainers addition for bioconductor-imcdatasets |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach, applygeo |
|
GITHUB
|
quay.io/biocontainers/bioconductor-imcrtools |
shpc-registry automated BioContainers addition for bioconductor-imcrtools |
testepsg, gdal_create, pdfsig, pg_standby, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach |
|
GITHUB
|
quay.io/biocontainers/bioconductor-imetagene |
shpc-registry automated BioContainers addition for bioconductor-imetagene |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-imman |
shpc-registry automated BioContainers addition for bioconductor-imman |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-immunespacer |
shpc-registry automated BioContainers addition for bioconductor-immunespacer |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-immunoclust |
shpc-registry automated BioContainers addition for bioconductor-immunoclust |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-immunogenviewer |
singularity registry hpc automated addition for bioconductor-immunogenviewer |
x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-immunotation |
shpc-registry automated BioContainers addition for bioconductor-immunotation |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-impcdata |
shpc-registry automated BioContainers addition for bioconductor-impcdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-impulsede |
shpc-registry automated BioContainers addition for bioconductor-impulsede |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-impulsede2 |
shpc-registry automated BioContainers addition for bioconductor-impulsede2 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-impute |
shpc-registry automated BioContainers addition for bioconductor-impute |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-indac.db |
shpc-registry automated BioContainers addition for bioconductor-indac.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-indeed |
shpc-registry automated BioContainers addition for bioconductor-indeed |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-inetgrate |
singularity registry hpc automated addition for bioconductor-inetgrate |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-infercnv |
shpc-registry automated BioContainers addition for bioconductor-infercnv |
jags, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-infinityflow |
shpc-registry automated BioContainers addition for bioconductor-infinityflow |
xgboost |
|
GITHUB
|
quay.io/biocontainers/bioconductor-informeasure |
shpc-registry automated BioContainers addition for bioconductor-informeasure |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-inpas |
shpc-registry automated BioContainers addition for bioconductor-inpas |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-inpower |
shpc-registry automated BioContainers addition for bioconductor-inpower |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-inspect |
shpc-registry automated BioContainers addition for bioconductor-inspect |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-intact |
singularity registry hpc automated addition for bioconductor-intact |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-intad |
shpc-registry automated BioContainers addition for bioconductor-intad |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-intansv |
shpc-registry automated BioContainers addition for bioconductor-intansv |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-interaccircos |
shpc-registry automated BioContainers addition for bioconductor-interaccircos |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-interactionset |
shpc-registry automated BioContainers addition for bioconductor-interactionset |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-interactivecomplexheatmap |
shpc-registry automated BioContainers addition for bioconductor-interactivecomplexheatmap |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-interactivedisplay |
shpc-registry automated BioContainers addition for bioconductor-interactivedisplay |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-interactivedisplaybase |
shpc-registry automated BioContainers addition for bioconductor-interactivedisplaybase |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-intercellar |
shpc-registry automated BioContainers addition for bioconductor-intercellar |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-interest |
shpc-registry automated BioContainers addition for bioconductor-interest |
my_print_defaults, mysql_config, perror, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-interminer |
shpc-registry automated BioContainers addition for bioconductor-interminer |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-intomics |
singularity registry hpc automated addition for bioconductor-intomics |
git2, hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, glpsol, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-intramirexplorer |
shpc-registry automated BioContainers addition for bioconductor-intramirexplorer |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-inversion |
shpc-registry automated BioContainers addition for bioconductor-inversion |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ioniser |
shpc-registry automated BioContainers addition for bioconductor-ioniser |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-iontreedata |
shpc-registry automated BioContainers addition for bioconductor-iontreedata |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ipac |
shpc-registry automated BioContainers addition for bioconductor-ipac |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ipath |
shpc-registry automated BioContainers addition for bioconductor-ipath |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ipddb |
shpc-registry automated BioContainers addition for bioconductor-ipddb |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ipo |
shpc-registry automated BioContainers addition for bioconductor-ipo |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ippd |
shpc-registry automated BioContainers addition for bioconductor-ippd |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-iranges |
shpc-registry automated BioContainers addition for bioconductor-iranges |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-irisfgm |
shpc-registry automated BioContainers addition for bioconductor-irisfgm |
geosop, geos-config, glpsol, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-isanalytics |
shpc-registry automated BioContainers addition for bioconductor-isanalytics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-isee |
shpc-registry automated BioContainers addition for bioconductor-isee |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-iseede |
singularity registry hpc automated addition for bioconductor-iseede |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-iseehex |
singularity registry hpc automated addition for bioconductor-iseehex |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-iseehub |
singularity registry hpc automated addition for bioconductor-iseehub |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-iseeindex |
singularity registry hpc automated addition for bioconductor-iseeindex |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-iseepathways |
singularity registry hpc automated addition for bioconductor-iseepathways |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-iseeu |
shpc-registry automated BioContainers addition for bioconductor-iseeu |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-iseq |
shpc-registry automated BioContainers addition for bioconductor-iseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-islet |
singularity registry hpc automated addition for bioconductor-islet |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-isobar |
shpc-registry automated BioContainers addition for bioconductor-isobar |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-isobayes |
singularity registry hpc automated addition for bioconductor-isobayes |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-isocorrector |
shpc-registry automated BioContainers addition for bioconductor-isocorrector |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-isocorrectorgui |
shpc-registry automated BioContainers addition for bioconductor-isocorrectorgui |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-isoformswitchanalyzer |
shpc-registry automated BioContainers addition for bioconductor-isoformswitchanalyzer |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-isogenegui |
shpc-registry automated BioContainers addition for bioconductor-isogenegui |
jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/bioconductor-isolde |
shpc-registry automated BioContainers addition for bioconductor-isolde |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-isomirs |
shpc-registry automated BioContainers addition for bioconductor-isomirs |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-italics |
shpc-registry automated BioContainers addition for bioconductor-italics |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-italicsdata |
shpc-registry automated BioContainers addition for bioconductor-italicsdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-iterativebma |
shpc-registry automated BioContainers addition for bioconductor-iterativebma |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-iterativebmasurv |
shpc-registry automated BioContainers addition for bioconductor-iterativebmasurv |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-iterclust |
shpc-registry automated BioContainers addition for bioconductor-iterclust |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-iteremoval |
shpc-registry automated BioContainers addition for bioconductor-iteremoval |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ivas |
shpc-registry automated BioContainers addition for bioconductor-ivas |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ivygapse |
shpc-registry automated BioContainers addition for bioconductor-ivygapse |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-iwtomics |
shpc-registry automated BioContainers addition for bioconductor-iwtomics |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-iyer517 |
shpc-registry automated BioContainers addition for bioconductor-iyer517 |
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GITHUB
|
quay.io/biocontainers/bioconductor-jaspar2014 |
shpc-registry automated BioContainers addition for bioconductor-jaspar2014 |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-jaspar2016 |
shpc-registry automated BioContainers addition for bioconductor-jaspar2016 |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-jaspar2018 |
shpc-registry automated BioContainers addition for bioconductor-jaspar2018 |
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GITHUB
|
quay.io/biocontainers/bioconductor-jaspar2020 |
shpc-registry automated BioContainers addition for bioconductor-jaspar2020 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-jaspar2022 |
singularity registry hpc automated addition for bioconductor-jaspar2022 |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-jaspar2024 |
singularity registry hpc automated addition for bioconductor-jaspar2024 |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-jazaerimetadata.db |
shpc-registry automated BioContainers addition for bioconductor-jazaerimetadata.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-jctseqdata |
shpc-registry automated BioContainers addition for bioconductor-jctseqdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-jmosaics |
shpc-registry automated BioContainers addition for bioconductor-jmosaics |
perl5.22.0, c2ph, pstruct, pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, podselect |
|
GITHUB
|
quay.io/biocontainers/bioconductor-joda |
shpc-registry automated BioContainers addition for bioconductor-joda |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-junctionseq |
shpc-registry automated BioContainers addition for bioconductor-junctionseq |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-karyoploter |
shpc-registry automated BioContainers addition for bioconductor-karyoploter |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-katdetectr |
singularity registry hpc automated addition for bioconductor-katdetectr |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-kboost |
shpc-registry automated BioContainers addition for bioconductor-kboost |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-kcsmart |
shpc-registry automated BioContainers addition for bioconductor-kcsmart |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-kebabs |
shpc-registry automated BioContainers addition for bioconductor-kebabs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-kegg.db |
shpc-registry automated BioContainers addition for bioconductor-kegg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-keggandmetacoredzpathwaysgeo |
shpc-registry automated BioContainers addition for bioconductor-keggandmetacoredzpathwaysgeo |
x86_64-conda-linux-gnu-gfortran.bin, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-keggdzpathwaysgeo |
shpc-registry automated BioContainers addition for bioconductor-keggdzpathwaysgeo |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-kegggraph |
shpc-registry automated BioContainers addition for bioconductor-kegggraph |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-kegglincs |
shpc-registry automated BioContainers addition for bioconductor-kegglincs |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-keggorthology |
shpc-registry automated BioContainers addition for bioconductor-keggorthology |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-keggprofile |
shpc-registry automated BioContainers addition for bioconductor-keggprofile |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-keggrest |
shpc-registry automated BioContainers addition for bioconductor-keggrest |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-kidpack |
shpc-registry automated BioContainers addition for bioconductor-kidpack |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-kimod |
shpc-registry automated BioContainers addition for bioconductor-kimod |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-kinswingr |
shpc-registry automated BioContainers addition for bioconductor-kinswingr |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-kissde |
shpc-registry automated BioContainers addition for bioconductor-kissde |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-kmcut |
singularity registry hpc automated addition for bioconductor-kmcut |
x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-knowseq |
shpc-registry automated BioContainers addition for bioconductor-knowseq |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-kodata |
shpc-registry automated BioContainers addition for bioconductor-kodata |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lace |
shpc-registry automated BioContainers addition for bioconductor-lace |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lapmix |
shpc-registry automated BioContainers addition for bioconductor-lapmix |
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GITHUB
|
quay.io/biocontainers/bioconductor-lapointe.db |
shpc-registry automated BioContainers addition for bioconductor-lapointe.db |
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GITHUB
|
quay.io/biocontainers/bioconductor-lbe |
shpc-registry automated BioContainers addition for bioconductor-lbe |
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GITHUB
|
quay.io/biocontainers/bioconductor-ldblock |
shpc-registry automated BioContainers addition for bioconductor-ldblock |
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GITHUB
|
quay.io/biocontainers/bioconductor-lea |
shpc-registry automated BioContainers addition for bioconductor-lea |
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GITHUB
|
quay.io/biocontainers/bioconductor-ledpred |
shpc-registry automated BioContainers addition for bioconductor-ledpred |
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GITHUB
|
quay.io/biocontainers/bioconductor-leebamviews |
shpc-registry automated BioContainers addition for bioconductor-leebamviews |
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GITHUB
|
quay.io/biocontainers/bioconductor-lefser |
shpc-registry automated BioContainers addition for bioconductor-lefser |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lemur |
singularity registry hpc automated addition for bioconductor-lemur |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-les |
shpc-registry automated BioContainers addition for bioconductor-les |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-leukemiaseset |
shpc-registry automated BioContainers addition for bioconductor-leukemiaseset |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-levi |
shpc-registry automated BioContainers addition for bioconductor-levi |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lfa |
shpc-registry automated BioContainers addition for bioconductor-lfa |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-liebermanaidenhic2009 |
shpc-registry automated BioContainers addition for bioconductor-liebermanaidenhic2009 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-limma |
shpc-registry automated BioContainers addition for bioconductor-limma |
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GITHUB
|
quay.io/biocontainers/bioconductor-limmagui |
shpc-registry automated BioContainers addition for bioconductor-limmagui |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-linc |
shpc-registry automated BioContainers addition for bioconductor-linc |
udunits2, wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lineagepulse |
shpc-registry automated BioContainers addition for bioconductor-lineagepulse |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lineagespot |
singularity registry hpc automated addition for bioconductor-lineagespot |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-linkhd |
shpc-registry automated BioContainers addition for bioconductor-linkhd |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-linnorm |
shpc-registry automated BioContainers addition for bioconductor-linnorm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lintind |
singularity registry hpc automated addition for bioconductor-lintind |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lionessr |
shpc-registry automated BioContainers addition for bioconductor-lionessr |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-lipidr |
shpc-registry automated BioContainers addition for bioconductor-lipidr |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-liquidassociation |
shpc-registry automated BioContainers addition for bioconductor-liquidassociation |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lisaclust |
shpc-registry automated BioContainers addition for bioconductor-lisaclust |
testepsg, gdal_create, pdfsig, pg_standby, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach |
|
GITHUB
|
quay.io/biocontainers/bioconductor-listeretalbsseq |
shpc-registry automated BioContainers addition for bioconductor-listeretalbsseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lmdme |
shpc-registry automated BioContainers addition for bioconductor-lmdme |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lmgene |
shpc-registry automated BioContainers addition for bioconductor-lmgene |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lobstahs |
shpc-registry automated BioContainers addition for bioconductor-lobstahs |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-loci2path |
shpc-registry automated BioContainers addition for bioconductor-loci2path |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-logicfs |
shpc-registry automated BioContainers addition for bioconductor-logicfs |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-logitt |
shpc-registry automated BioContainers addition for bioconductor-logitt |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-logolas |
shpc-registry automated BioContainers addition for bioconductor-logolas |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lol |
shpc-registry automated BioContainers addition for bioconductor-lol |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lola |
shpc-registry automated BioContainers addition for bioconductor-lola |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-loomexperiment |
shpc-registry automated BioContainers addition for bioconductor-loomexperiment |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lowmaca |
shpc-registry automated BioContainers addition for bioconductor-lowmaca |
clustalo |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lowmacaannotation |
shpc-registry automated BioContainers addition for bioconductor-lowmacaannotation |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lpe |
shpc-registry automated BioContainers addition for bioconductor-lpe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lpeadj |
shpc-registry automated BioContainers addition for bioconductor-lpeadj |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lpnet |
shpc-registry automated BioContainers addition for bioconductor-lpnet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lpsymphony |
shpc-registry automated BioContainers addition for bioconductor-lpsymphony |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.ath.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.ath.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.bta.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.bta.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.cel.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.cel.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.dme.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.dme.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.dre.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.dre.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.gga.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.gga.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.hsa.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.hsa.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.mmu.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.mmu.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.pab.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.pab.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.rno.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.rno.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.ssc.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.ssc.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.xtr.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.xtr.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbasedbi |
shpc-registry automated BioContainers addition for bioconductor-lrbasedbi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrcell |
shpc-registry automated BioContainers addition for bioconductor-lrcell |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrcelltypemarkers |
shpc-registry automated BioContainers addition for bioconductor-lrcelltypemarkers |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lumi |
shpc-registry automated BioContainers addition for bioconductor-lumi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lumibarnes |
shpc-registry automated BioContainers addition for bioconductor-lumibarnes |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lumihumanall.db |
shpc-registry automated BioContainers addition for bioconductor-lumihumanall.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lumihumanidmapping |
shpc-registry automated BioContainers addition for bioconductor-lumihumanidmapping |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lumimouseall.db |
shpc-registry automated BioContainers addition for bioconductor-lumimouseall.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lumimouseidmapping |
shpc-registry automated BioContainers addition for bioconductor-lumimouseidmapping |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lumiratall.db |
shpc-registry automated BioContainers addition for bioconductor-lumiratall.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lumiratidmapping |
shpc-registry automated BioContainers addition for bioconductor-lumiratidmapping |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lungcanceracvssccgeo |
shpc-registry automated BioContainers addition for bioconductor-lungcanceracvssccgeo |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lungcancerlines |
shpc-registry automated BioContainers addition for bioconductor-lungcancerlines |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lungexpression |
shpc-registry automated BioContainers addition for bioconductor-lungexpression |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lvsmirna |
shpc-registry automated BioContainers addition for bioconductor-lvsmirna |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lydata |
shpc-registry automated BioContainers addition for bioconductor-lydata |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lymphoseq |
shpc-registry automated BioContainers addition for bioconductor-lymphoseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lymphoseqdb |
shpc-registry automated BioContainers addition for bioconductor-lymphoseqdb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-m10kcod.db |
shpc-registry automated BioContainers addition for bioconductor-m10kcod.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-m20kcod.db |
shpc-registry automated BioContainers addition for bioconductor-m20kcod.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-m3c |
shpc-registry automated BioContainers addition for bioconductor-m3c |
f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, gio-launch-desktop |
|
GITHUB
|
quay.io/biocontainers/bioconductor-m3d |
shpc-registry automated BioContainers addition for bioconductor-m3d |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-m3dexampledata |
shpc-registry automated BioContainers addition for bioconductor-m3dexampledata |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-m3drop |
shpc-registry automated BioContainers addition for bioconductor-m3drop |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-m6aboost |
shpc-registry automated BioContainers addition for bioconductor-m6aboost |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-maanova |
shpc-registry automated BioContainers addition for bioconductor-maanova |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-maaslin2 |
shpc-registry automated BioContainers addition for bioconductor-maaslin2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-macarron |
singularity registry hpc automated addition for bioconductor-macarron |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-macat |
shpc-registry automated BioContainers addition for bioconductor-macat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-macorrplot |
shpc-registry automated BioContainers addition for bioconductor-macorrplot |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-macpet |
shpc-registry automated BioContainers addition for bioconductor-macpet |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-macrophage |
shpc-registry automated BioContainers addition for bioconductor-macrophage |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-macsdata |
shpc-registry automated BioContainers addition for bioconductor-macsdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-macsquantifyr |
shpc-registry automated BioContainers addition for bioconductor-macsquantifyr |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-macsr |
shpc-registry automated BioContainers addition for bioconductor-macsr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-made4 |
shpc-registry automated BioContainers addition for bioconductor-made4 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-madseq |
shpc-registry automated BioContainers addition for bioconductor-madseq |
jags, wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.1kgenomes.phase1.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.1kgenomes.phase1.grch38 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.1kgenomes.phase1.hs37d5 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.1kgenomes.phase1.hs37d5 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.1kgenomes.phase3.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.1kgenomes.phase3.grch38 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.1kgenomes.phase3.hs37d5 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.1kgenomes.phase3.hs37d5 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.esp6500si.v2.ssa137.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.esp6500si.v2.ssa137.grch38 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.esp6500si.v2.ssa137.hs37d5 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.esp6500si.v2.ssa137.hs37d5 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.exac.r1.0.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.exac.r1.0.grch38 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.exac.r1.0.hs37d5 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.exac.r1.0.hs37d5 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.exac.r1.0.nontcga.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.exac.r1.0.nontcga.grch38 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.exac.r1.0.nontcga.hs37d5 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.exac.r1.0.nontcga.hs37d5 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.gnomad.r2.0.1.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomad.r2.0.1.grch38 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.gnomad.r2.0.1.hs37d5 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomad.r2.0.1.hs37d5 |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.gnomad.r2.1.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomad.r2.1.grch38 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.gnomad.r2.1.hs37d5 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomad.r2.1.hs37d5 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.gnomad.r3.0.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomad.r3.0.grch38 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.gnomadex.r2.0.1.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomadex.r2.0.1.grch38 |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.gnomadex.r2.0.1.hs37d5 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomadex.r2.0.1.hs37d5 |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.gnomadex.r2.1.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomadex.r2.1.grch38 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.gnomadex.r2.1.hs37d5 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomadex.r2.1.hs37d5 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.topmed.freeze5.hg19 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.topmed.freeze5.hg19 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.topmed.freeze5.hg38 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.topmed.freeze5.hg38 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafh5.gnomad.r3.0.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafh5.gnomad.r3.0.grch38 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafh5.gnomad.v3.1.1.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafh5.gnomad.v3.1.1.grch38 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafh5.gnomad.v3.1.2.grch38 |
singularity registry hpc automated addition for bioconductor-mafh5.gnomad.v3.1.2.grch38 |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-maftools |
shpc-registry automated BioContainers addition for bioconductor-maftools |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-magar |
shpc-registry automated BioContainers addition for bioconductor-magar |
2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mageckflute |
shpc-registry automated BioContainers addition for bioconductor-mageckflute |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-magpie |
singularity registry hpc automated addition for bioconductor-magpie |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-magrene |
singularity registry hpc automated addition for bioconductor-magrene |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mai |
shpc-registry automated BioContainers addition for bioconductor-mai |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-maigespack |
shpc-registry automated BioContainers addition for bioconductor-maigespack |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mait |
shpc-registry automated BioContainers addition for bioconductor-mait |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach, applygeo |
|
GITHUB
|
quay.io/biocontainers/bioconductor-maizecdf |
shpc-registry automated BioContainers addition for bioconductor-maizecdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-maizeprobe |
shpc-registry automated BioContainers addition for bioconductor-maizeprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-makecdfenv |
shpc-registry automated BioContainers addition for bioconductor-makecdfenv |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-malaria.db0 |
shpc-registry automated BioContainers addition for bioconductor-malaria.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mammaprintdata |
shpc-registry automated BioContainers addition for bioconductor-mammaprintdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-manor |
shpc-registry automated BioContainers addition for bioconductor-manor |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-manta |
shpc-registry automated BioContainers addition for bioconductor-manta |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mantelcorr |
shpc-registry automated BioContainers addition for bioconductor-mantelcorr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mapkl |
shpc-registry automated BioContainers addition for bioconductor-mapkl |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mapkldata |
shpc-registry automated BioContainers addition for bioconductor-mapkldata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mapredictdsc |
shpc-registry automated BioContainers addition for bioconductor-mapredictdsc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mapscape |
shpc-registry automated BioContainers addition for bioconductor-mapscape |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-maqcexpression4plex |
shpc-registry automated BioContainers addition for bioconductor-maqcexpression4plex |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-maqcsubset |
shpc-registry automated BioContainers addition for bioconductor-maqcsubset |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-maqcsubsetafx |
shpc-registry automated BioContainers addition for bioconductor-maqcsubsetafx |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-maqcsubsetilm |
shpc-registry automated BioContainers addition for bioconductor-maqcsubsetilm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-marinerdata |
singularity registry hpc automated addition for bioconductor-marinerdata |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-marr |
shpc-registry automated BioContainers addition for bioconductor-marr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-marray |
shpc-registry automated BioContainers addition for bioconductor-marray |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-martini |
shpc-registry automated BioContainers addition for bioconductor-martini |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-maser |
shpc-registry automated BioContainers addition for bioconductor-maser |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-masigpro |
shpc-registry automated BioContainers addition for bioconductor-masigpro |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-maskbad |
shpc-registry automated BioContainers addition for bioconductor-maskbad |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-massarray |
shpc-registry automated BioContainers addition for bioconductor-massarray |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-massir |
shpc-registry automated BioContainers addition for bioconductor-massir |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-massspecwavelet |
shpc-registry automated BioContainers addition for bioconductor-massspecwavelet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mast |
shpc-registry automated BioContainers addition for bioconductor-mast |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mastr |
singularity registry hpc automated addition for bioconductor-mastr |
geosop, geos-config, hb-info, f2py3.11, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-matchbox |
shpc-registry automated BioContainers addition for bioconductor-matchbox |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-matrixgenerics |
shpc-registry automated BioContainers addition for bioconductor-matrixgenerics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-matrixqcvis |
shpc-registry automated BioContainers addition for bioconductor-matrixqcvis |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-matrixrider |
shpc-registry automated BioContainers addition for bioconductor-matrixrider |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-matter |
shpc-registry automated BioContainers addition for bioconductor-matter |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-maxcontrastprojection |
shpc-registry automated BioContainers addition for bioconductor-maxcontrastprojection |
mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, mpifort, mpic++, mpicc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mbamethyl |
shpc-registry automated BioContainers addition for bioconductor-mbamethyl |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mbased |
shpc-registry automated BioContainers addition for bioconductor-mbased |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mbcb |
shpc-registry automated BioContainers addition for bioconductor-mbcb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mbecs |
singularity registry hpc automated addition for bioconductor-mbecs |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, pandoc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mbkmeans |
shpc-registry automated BioContainers addition for bioconductor-mbkmeans |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mbomic |
singularity registry hpc automated addition for bioconductor-mbomic |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mbpcr |
shpc-registry automated BioContainers addition for bioconductor-mbpcr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mbqn |
shpc-registry automated BioContainers addition for bioconductor-mbqn |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mbqtl |
singularity registry hpc automated addition for bioconductor-mbqtl |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mbttest |
shpc-registry automated BioContainers addition for bioconductor-mbttest |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mcagui |
shpc-registry automated BioContainers addition for bioconductor-mcagui |
gtk-builder-convert, gtk-demo, gtk-query-immodules-2.0, gtk-update-icon-cache, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mcbiclust |
shpc-registry automated BioContainers addition for bioconductor-mcbiclust |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mcrestimate |
shpc-registry automated BioContainers addition for bioconductor-mcrestimate |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mcsea |
shpc-registry automated BioContainers addition for bioconductor-mcsea |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mcseadata |
shpc-registry automated BioContainers addition for bioconductor-mcseadata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mcsurvdata |
shpc-registry automated BioContainers addition for bioconductor-mcsurvdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mdgsa |
shpc-registry automated BioContainers addition for bioconductor-mdgsa |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mdp |
shpc-registry automated BioContainers addition for bioconductor-mdp |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mdqc |
shpc-registry automated BioContainers addition for bioconductor-mdqc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mdts |
shpc-registry automated BioContainers addition for bioconductor-mdts |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-meal |
shpc-registry automated BioContainers addition for bioconductor-meal |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-measurementerror.cor |
shpc-registry automated BioContainers addition for bioconductor-measurementerror.cor |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-meat |
shpc-registry automated BioContainers addition for bioconductor-meat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-meb |
shpc-registry automated BioContainers addition for bioconductor-meb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-medicagocdf |
shpc-registry automated BioContainers addition for bioconductor-medicagocdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-medicagoprobe |
shpc-registry automated BioContainers addition for bioconductor-medicagoprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-medips |
shpc-registry automated BioContainers addition for bioconductor-medips |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-medipsdata |
shpc-registry automated BioContainers addition for bioconductor-medipsdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-medme |
shpc-registry automated BioContainers addition for bioconductor-medme |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-meebodata |
shpc-registry automated BioContainers addition for bioconductor-meebodata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-megadepth |
shpc-registry automated BioContainers addition for bioconductor-megadepth |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-meigor |
shpc-registry automated BioContainers addition for bioconductor-meigor |
diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts |
|
GITHUB
|
quay.io/biocontainers/bioconductor-melissa |
shpc-registry automated BioContainers addition for bioconductor-melissa |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-memes |
shpc-registry automated BioContainers addition for bioconductor-memes |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-merfishdata |
singularity registry hpc automated addition for bioconductor-merfishdata |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mergemaid |
shpc-registry automated BioContainers addition for bioconductor-mergemaid |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mergeomics |
shpc-registry automated BioContainers addition for bioconductor-mergeomics |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-meshdbi |
shpc-registry automated BioContainers addition for bioconductor-meshdbi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-meshes |
shpc-registry automated BioContainers addition for bioconductor-meshes |
udunits2, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-meshr |
shpc-registry automated BioContainers addition for bioconductor-meshr |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-meshsim |
shpc-registry automated BioContainers addition for bioconductor-meshsim |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-meskit |
shpc-registry automated BioContainers addition for bioconductor-meskit |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-messina |
shpc-registry automated BioContainers addition for bioconductor-messina |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metaarray |
shpc-registry automated BioContainers addition for bioconductor-metaarray |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metab |
shpc-registry automated BioContainers addition for bioconductor-metab |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metabcombiner |
shpc-registry automated BioContainers addition for bioconductor-metabcombiner |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metabinr |
singularity registry hpc automated addition for bioconductor-metabinr |
jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap, jps |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metaboannotation |
singularity registry hpc automated addition for bioconductor-metaboannotation |
installBiocDataPackage.sh, tomlq, xq, yq, rsvg-convert, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metabocoreutils |
shpc-registry automated BioContainers addition for bioconductor-metabocoreutils |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metaboliteidmapping |
shpc-registry automated BioContainers addition for bioconductor-metaboliteidmapping |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metabolomicsworkbenchr |
shpc-registry automated BioContainers addition for bioconductor-metabolomicsworkbenchr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metabomxtr |
shpc-registry automated BioContainers addition for bioconductor-metabomxtr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metabosignal |
shpc-registry automated BioContainers addition for bioconductor-metabosignal |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metacca |
shpc-registry automated BioContainers addition for bioconductor-metacca |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metacyto |
shpc-registry automated BioContainers addition for bioconductor-metacyto |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metagene |
shpc-registry automated BioContainers addition for bioconductor-metagene |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metagene2 |
shpc-registry automated BioContainers addition for bioconductor-metagene2 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metagenomefeatures |
shpc-registry automated BioContainers addition for bioconductor-metagenomefeatures |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metagenomeseq |
shpc-registry automated BioContainers addition for bioconductor-metagenomeseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metagxbreast |
shpc-registry automated BioContainers addition for bioconductor-metagxbreast |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metagxovarian |
shpc-registry automated BioContainers addition for bioconductor-metagxovarian |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metagxpancreas |
shpc-registry automated BioContainers addition for bioconductor-metagxpancreas |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metahdep |
shpc-registry automated BioContainers addition for bioconductor-metahdep |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metams |
shpc-registry automated BioContainers addition for bioconductor-metams |
pngcp, nc-config, nccopy, ncdump, ncgen, ncgen3, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metamsdata |
shpc-registry automated BioContainers addition for bioconductor-metamsdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metaneighbor |
shpc-registry automated BioContainers addition for bioconductor-metaneighbor |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metaphor |
singularity registry hpc automated addition for bioconductor-metaphor |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, jpackage, curve_keygen, cups-config, ippeveprinter, ipptool, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, jfr, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metapod |
shpc-registry automated BioContainers addition for bioconductor-metapod |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metapone |
shpc-registry automated BioContainers addition for bioconductor-metapone |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metascope |
singularity registry hpc automated addition for bioconductor-metascope |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metaseq |
shpc-registry automated BioContainers addition for bioconductor-metaseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metaseqr |
shpc-registry automated BioContainers addition for bioconductor-metaseqr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metaseqr2 |
shpc-registry automated BioContainers addition for bioconductor-metaseqr2 |
pandoc-server, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metavizr |
shpc-registry automated BioContainers addition for bioconductor-metavizr |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metavolcanor |
shpc-registry automated BioContainers addition for bioconductor-metavolcanor |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metcirc |
shpc-registry automated BioContainers addition for bioconductor-metcirc |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methcp |
shpc-registry automated BioContainers addition for bioconductor-methcp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methimpute |
shpc-registry automated BioContainers addition for bioconductor-methimpute |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methinheritsim |
shpc-registry automated BioContainers addition for bioconductor-methinheritsim |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methped |
shpc-registry automated BioContainers addition for bioconductor-methped |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methreg |
shpc-registry automated BioContainers addition for bioconductor-methreg |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methrix |
shpc-registry automated BioContainers addition for bioconductor-methrix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methtargetedngs |
shpc-registry automated BioContainers addition for bioconductor-methtargetedngs |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methvisual |
shpc-registry automated BioContainers addition for bioconductor-methvisual |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methyanalysis |
shpc-registry automated BioContainers addition for bioconductor-methyanalysis |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylaid |
shpc-registry automated BioContainers addition for bioconductor-methylaid |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylaiddata |
shpc-registry automated BioContainers addition for bioconductor-methylaiddata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylcc |
shpc-registry automated BioContainers addition for bioconductor-methylcc |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylclock |
shpc-registry automated BioContainers addition for bioconductor-methylclock |
git2_cli, pandoc-server, pandoc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylclockdata |
shpc-registry automated BioContainers addition for bioconductor-methylclockdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylgsa |
shpc-registry automated BioContainers addition for bioconductor-methylgsa |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylimp2 |
singularity registry hpc automated addition for bioconductor-methylimp2 |
x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylinheritance |
shpc-registry automated BioContainers addition for bioconductor-methylinheritance |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylkit |
shpc-registry automated BioContainers addition for bioconductor-methylkit |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylmix |
shpc-registry automated BioContainers addition for bioconductor-methylmix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylmnm |
shpc-registry automated BioContainers addition for bioconductor-methylmnm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylpipe |
shpc-registry automated BioContainers addition for bioconductor-methylpipe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylscaper |
shpc-registry automated BioContainers addition for bioconductor-methylscaper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylseekr |
shpc-registry automated BioContainers addition for bioconductor-methylseekr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylseqdata |
shpc-registry automated BioContainers addition for bioconductor-methylseqdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylsig |
shpc-registry automated BioContainers addition for bioconductor-methylsig |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylumi |
shpc-registry automated BioContainers addition for bioconductor-methylumi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methyvim |
shpc-registry automated BioContainers addition for bioconductor-methyvim |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methyvimdata |
shpc-registry automated BioContainers addition for bioconductor-methyvimdata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metid |
shpc-registry automated BioContainers addition for bioconductor-metid |
rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metnet |
shpc-registry automated BioContainers addition for bioconductor-metnet |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mfa |
shpc-registry automated BioContainers addition for bioconductor-mfa |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mfuzz |
shpc-registry automated BioContainers addition for bioconductor-mfuzz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgfm |
shpc-registry automated BioContainers addition for bioconductor-mgfm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgfr |
shpc-registry automated BioContainers addition for bioconductor-mgfr |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgnifyr |
singularity registry hpc automated addition for bioconductor-mgnifyr |
pandoc-lua, x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, pandoc-server, numpy-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgsa |
shpc-registry automated BioContainers addition for bioconductor-mgsa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74a.db |
shpc-registry automated BioContainers addition for bioconductor-mgu74a.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74acdf |
shpc-registry automated BioContainers addition for bioconductor-mgu74acdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74aprobe |
shpc-registry automated BioContainers addition for bioconductor-mgu74aprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74av2.db |
shpc-registry automated BioContainers addition for bioconductor-mgu74av2.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74av2cdf |
shpc-registry automated BioContainers addition for bioconductor-mgu74av2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74av2probe |
shpc-registry automated BioContainers addition for bioconductor-mgu74av2probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74b.db |
shpc-registry automated BioContainers addition for bioconductor-mgu74b.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74bcdf |
shpc-registry automated BioContainers addition for bioconductor-mgu74bcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74bprobe |
shpc-registry automated BioContainers addition for bioconductor-mgu74bprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74bv2.db |
shpc-registry automated BioContainers addition for bioconductor-mgu74bv2.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74bv2cdf |
shpc-registry automated BioContainers addition for bioconductor-mgu74bv2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74bv2probe |
shpc-registry automated BioContainers addition for bioconductor-mgu74bv2probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74c.db |
shpc-registry automated BioContainers addition for bioconductor-mgu74c.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74ccdf |
shpc-registry automated BioContainers addition for bioconductor-mgu74ccdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74cprobe |
shpc-registry automated BioContainers addition for bioconductor-mgu74cprobe |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74cv2.db |
shpc-registry automated BioContainers addition for bioconductor-mgu74cv2.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74cv2cdf |
shpc-registry automated BioContainers addition for bioconductor-mgu74cv2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74cv2probe |
shpc-registry automated BioContainers addition for bioconductor-mgu74cv2probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mguatlas5k.db |
shpc-registry automated BioContainers addition for bioconductor-mguatlas5k.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgug4104a.db |
shpc-registry automated BioContainers addition for bioconductor-mgug4104a.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgug4120a.db |
shpc-registry automated BioContainers addition for bioconductor-mgug4120a.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgug4121a.db |
shpc-registry automated BioContainers addition for bioconductor-mgug4121a.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgug4122a.db |
shpc-registry automated BioContainers addition for bioconductor-mgug4122a.db |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mi16cod.db |
shpc-registry automated BioContainers addition for bioconductor-mi16cod.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mia |
shpc-registry automated BioContainers addition for bioconductor-mia |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-miasim |
shpc-registry automated BioContainers addition for bioconductor-miasim |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-miaviz |
shpc-registry automated BioContainers addition for bioconductor-miaviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-michip |
shpc-registry automated BioContainers addition for bioconductor-michip |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-microbiome |
shpc-registry automated BioContainers addition for bioconductor-microbiome |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-microbiomebenchmarkdata |
singularity registry hpc automated addition for bioconductor-microbiomebenchmarkdata |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-microbiomedasim |
shpc-registry automated BioContainers addition for bioconductor-microbiomedasim |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-microbiomedatasets |
shpc-registry automated BioContainers addition for bioconductor-microbiomedatasets |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-microbiomeexplorer |
shpc-registry automated BioContainers addition for bioconductor-microbiomeexplorer |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-microbiomemarker |
shpc-registry automated BioContainers addition for bioconductor-microbiomemarker |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-microbiomeprofiler |
shpc-registry automated BioContainers addition for bioconductor-microbiomeprofiler |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-microbiotaprocess |
shpc-registry automated BioContainers addition for bioconductor-microbiotaprocess |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-microrna |
shpc-registry automated BioContainers addition for bioconductor-microrna |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-micrornaome |
shpc-registry automated BioContainers addition for bioconductor-micrornaome |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-microstasis |
singularity registry hpc automated addition for bioconductor-microstasis |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-midashla |
shpc-registry automated BioContainers addition for bioconductor-midashla |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-migsa |
shpc-registry automated BioContainers addition for bioconductor-migsa |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-migsadata |
shpc-registry automated BioContainers addition for bioconductor-migsadata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-milor |
shpc-registry automated BioContainers addition for bioconductor-milor |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mimager |
shpc-registry automated BioContainers addition for bioconductor-mimager |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mimosa |
shpc-registry automated BioContainers addition for bioconductor-mimosa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mina |
shpc-registry automated BioContainers addition for bioconductor-mina |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mineica |
shpc-registry automated BioContainers addition for bioconductor-mineica |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-minet |
shpc-registry automated BioContainers addition for bioconductor-minet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-minfi |
shpc-registry automated BioContainers addition for bioconductor-minfi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-minfidata |
shpc-registry automated BioContainers addition for bioconductor-minfidata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-minfidataepic |
shpc-registry automated BioContainers addition for bioconductor-minfidataepic |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-minimumdistance |
shpc-registry automated BioContainers addition for bioconductor-minimumdistance |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-minionsummarydata |
shpc-registry automated BioContainers addition for bioconductor-minionsummarydata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mipp |
shpc-registry automated BioContainers addition for bioconductor-mipp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-miqc |
shpc-registry automated BioContainers addition for bioconductor-miqc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mira |
shpc-registry automated BioContainers addition for bioconductor-mira |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirage |
shpc-registry automated BioContainers addition for bioconductor-mirage |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirbase.db |
shpc-registry automated BioContainers addition for bioconductor-mirbase.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirbaseconverter |
shpc-registry automated BioContainers addition for bioconductor-mirbaseconverter |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirbaseversions.db |
shpc-registry automated BioContainers addition for bioconductor-mirbaseversions.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mircomp |
shpc-registry automated BioContainers addition for bioconductor-mircomp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mircompdata |
shpc-registry automated BioContainers addition for bioconductor-mircompdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirintegrator |
shpc-registry automated BioContainers addition for bioconductor-mirintegrator |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirlab |
shpc-registry automated BioContainers addition for bioconductor-mirlab |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirmine |
shpc-registry automated BioContainers addition for bioconductor-mirmine |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirna102xgaincdf |
shpc-registry automated BioContainers addition for bioconductor-mirna102xgaincdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirna10cdf |
shpc-registry automated BioContainers addition for bioconductor-mirna10cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirna10probe |
shpc-registry automated BioContainers addition for bioconductor-mirna10probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirna20cdf |
shpc-registry automated BioContainers addition for bioconductor-mirna20cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirnameconverter |
shpc-registry automated BioContainers addition for bioconductor-mirnameconverter |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirnapath |
shpc-registry automated BioContainers addition for bioconductor-mirnapath |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirnatap.db |
shpc-registry automated BioContainers addition for bioconductor-mirnatap.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirnatap |
shpc-registry automated BioContainers addition for bioconductor-mirnatap |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirnatarget |
shpc-registry automated BioContainers addition for bioconductor-mirnatarget |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirsm |
shpc-registry automated BioContainers addition for bioconductor-mirsm |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, f2py3.9 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirsponge |
shpc-registry automated BioContainers addition for bioconductor-mirsponge |
udunits2, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirsponger |
shpc-registry automated BioContainers addition for bioconductor-mirsponger |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirsynergy |
shpc-registry automated BioContainers addition for bioconductor-mirsynergy |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirtarrnaseq |
shpc-registry automated BioContainers addition for bioconductor-mirtarrnaseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-missmethyl |
shpc-registry automated BioContainers addition for bioconductor-missmethyl |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-missrows |
shpc-registry automated BioContainers addition for bioconductor-missrows |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mistyr |
shpc-registry automated BioContainers addition for bioconductor-mistyr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mitch |
shpc-registry automated BioContainers addition for bioconductor-mitch |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mitoclone2 |
shpc-registry automated BioContainers addition for bioconductor-mitoclone2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mitoode |
shpc-registry automated BioContainers addition for bioconductor-mitoode |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mitoodedata |
shpc-registry automated BioContainers addition for bioconductor-mitoodedata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mixomics |
shpc-registry automated BioContainers addition for bioconductor-mixomics |
f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, gio-launch-desktop |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mlinterfaces |
shpc-registry automated BioContainers addition for bioconductor-mlinterfaces |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mlm4omics |
shpc-registry automated BioContainers addition for bioconductor-mlm4omics |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mlp |
shpc-registry automated BioContainers addition for bioconductor-mlp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mlseq |
shpc-registry automated BioContainers addition for bioconductor-mlseq |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mm24kresogen.db |
shpc-registry automated BioContainers addition for bioconductor-mm24kresogen.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mmagilentdesign026655.db |
shpc-registry automated BioContainers addition for bioconductor-mmagilentdesign026655.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mmappr2 |
shpc-registry automated BioContainers addition for bioconductor-mmappr2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mmappr2data |
shpc-registry automated BioContainers addition for bioconductor-mmappr2data |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mmdiff |
shpc-registry automated BioContainers addition for bioconductor-mmdiff |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mmdiff2 |
shpc-registry automated BioContainers addition for bioconductor-mmdiff2 |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mmdiffbamsubset |
shpc-registry automated BioContainers addition for bioconductor-mmdiffbamsubset |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mmnet |
shpc-registry automated BioContainers addition for bioconductor-mmnet |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mmpalatemirna |
shpc-registry automated BioContainers addition for bioconductor-mmpalatemirna |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mmuphin |
shpc-registry automated BioContainers addition for bioconductor-mmuphin |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mnem |
shpc-registry automated BioContainers addition for bioconductor-mnem |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-moanin |
shpc-registry automated BioContainers addition for bioconductor-moanin |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mobilitytransformr |
singularity registry hpc automated addition for bioconductor-mobilitytransformr |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff, hdp, hrepack, jpeg2hdf, paltohdf |
|
GITHUB
|
quay.io/biocontainers/bioconductor-moda |
shpc-registry automated BioContainers addition for bioconductor-moda |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-modcon |
shpc-registry automated BioContainers addition for bioconductor-modcon |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/bioconductor-modstrings |
shpc-registry automated BioContainers addition for bioconductor-modstrings |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-moe430a.db |
shpc-registry automated BioContainers addition for bioconductor-moe430a.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-moe430acdf |
shpc-registry automated BioContainers addition for bioconductor-moe430acdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-moe430aprobe |
shpc-registry automated BioContainers addition for bioconductor-moe430aprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-moe430b.db |
shpc-registry automated BioContainers addition for bioconductor-moe430b.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-moe430bcdf |
shpc-registry automated BioContainers addition for bioconductor-moe430bcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-moe430bprobe |
shpc-registry automated BioContainers addition for bioconductor-moe430bprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-moex10stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-moex10stprobeset.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-moex10sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-moex10sttranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-moexexonprobesetlocation |
shpc-registry automated BioContainers addition for bioconductor-moexexonprobesetlocation |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mofa |
shpc-registry automated BioContainers addition for bioconductor-mofa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mofa2 |
shpc-registry automated BioContainers addition for bioconductor-mofa2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mofadata |
shpc-registry automated BioContainers addition for bioconductor-mofadata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogamun |
shpc-registry automated BioContainers addition for bioconductor-mogamun |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogene.1.0.st.v1frmavecs |
shpc-registry automated BioContainers addition for bioconductor-mogene.1.0.st.v1frmavecs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogene10stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-mogene10stprobeset.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogene10sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-mogene10sttranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogene10stv1cdf |
shpc-registry automated BioContainers addition for bioconductor-mogene10stv1cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogene10stv1probe |
shpc-registry automated BioContainers addition for bioconductor-mogene10stv1probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogene11stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-mogene11stprobeset.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogene11sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-mogene11sttranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogene20stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-mogene20stprobeset.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogene20sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-mogene20sttranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogene21stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-mogene21stprobeset.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogene21sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-mogene21sttranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogsa |
shpc-registry automated BioContainers addition for bioconductor-mogsa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-moleculeexperiment |
singularity registry hpc automated addition for bioconductor-moleculeexperiment |
sozip, h5delete, pg_amcheck, bsdcat, bsdcpio, bsdtar, pdfsig, gdal_create, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, gdal-config, gdal_contour, gdal_grid, gdal_rasterize |
|
GITHUB
|
quay.io/biocontainers/bioconductor-moma |
shpc-registry automated BioContainers addition for bioconductor-moma |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-monalisa |
shpc-registry automated BioContainers addition for bioconductor-monalisa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-monocle |
shpc-registry automated BioContainers addition for bioconductor-monocle |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-moonlight2r |
singularity registry hpc automated addition for bioconductor-moonlight2r |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-moonlightr |
shpc-registry automated BioContainers addition for bioconductor-moonlightr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mops |
shpc-registry automated BioContainers addition for bioconductor-mops |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mosaics |
shpc-registry automated BioContainers addition for bioconductor-mosaics |
perl5.22.0, c2ph, pstruct, pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, podselect |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mosaicsexample |
shpc-registry automated BioContainers addition for bioconductor-mosaicsexample |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mosbi |
shpc-registry automated BioContainers addition for bioconductor-mosbi |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mosim |
shpc-registry automated BioContainers addition for bioconductor-mosim |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-motif2site |
singularity registry hpc automated addition for bioconductor-motif2site |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-motifbreakr |
shpc-registry automated BioContainers addition for bioconductor-motifbreakr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-motifcounter |
shpc-registry automated BioContainers addition for bioconductor-motifcounter |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-motifdb |
shpc-registry automated BioContainers addition for bioconductor-motifdb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-motifmatchr |
shpc-registry automated BioContainers addition for bioconductor-motifmatchr |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-motifrg |
shpc-registry automated BioContainers addition for bioconductor-motifrg |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-motifstack |
shpc-registry automated BioContainers addition for bioconductor-motifstack |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-motiv |
shpc-registry automated BioContainers addition for bioconductor-motiv |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mouse.db0 |
shpc-registry automated BioContainers addition for bioconductor-mouse.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mouse4302.db |
shpc-registry automated BioContainers addition for bioconductor-mouse4302.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mouse4302barcodevecs |
shpc-registry automated BioContainers addition for bioconductor-mouse4302barcodevecs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mouse4302cdf |
shpc-registry automated BioContainers addition for bioconductor-mouse4302cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mouse4302frmavecs |
shpc-registry automated BioContainers addition for bioconductor-mouse4302frmavecs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mouse4302probe |
shpc-registry automated BioContainers addition for bioconductor-mouse4302probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mouse430a2.db |
shpc-registry automated BioContainers addition for bioconductor-mouse430a2.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mouse430a2cdf |
shpc-registry automated BioContainers addition for bioconductor-mouse430a2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mouse430a2frmavecs |
shpc-registry automated BioContainers addition for bioconductor-mouse430a2frmavecs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mouse430a2probe |
shpc-registry automated BioContainers addition for bioconductor-mouse430a2probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mousechrloc |
shpc-registry automated BioContainers addition for bioconductor-mousechrloc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mousefm |
shpc-registry automated BioContainers addition for bioconductor-mousefm |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mousegastrulationdata |
shpc-registry automated BioContainers addition for bioconductor-mousegastrulationdata |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mousethymusageing |
shpc-registry automated BioContainers addition for bioconductor-mousethymusageing |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mpac |
singularity registry hpc automated addition for bioconductor-mpac |
x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mpedbarray.db |
shpc-registry automated BioContainers addition for bioconductor-mpedbarray.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mpfe |
shpc-registry automated BioContainers addition for bioconductor-mpfe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mpo.db |
singularity registry hpc automated addition for bioconductor-mpo.db |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mpra |
shpc-registry automated BioContainers addition for bioconductor-mpra |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mpranalyze |
shpc-registry automated BioContainers addition for bioconductor-mpranalyze |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mqmetrics |
shpc-registry automated BioContainers addition for bioconductor-mqmetrics |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mqtl.nmr |
shpc-registry automated BioContainers addition for bioconductor-mqtl.nmr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msa |
shpc-registry automated BioContainers addition for bioconductor-msa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msa2dist |
singularity registry hpc automated addition for bioconductor-msa2dist |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msbackendmassbank |
shpc-registry automated BioContainers addition for bioconductor-msbackendmassbank |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msbackendmgf |
shpc-registry automated BioContainers addition for bioconductor-msbackendmgf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msbackendmsp |
singularity registry hpc automated addition for bioconductor-msbackendmsp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msbackendrawfilereader |
shpc-registry automated BioContainers addition for bioconductor-msbackendrawfilereader |
aprofutil, csc, csi, illinkanalyzer, mono-hang-watchdog, vbc, mono-package-runtime, sgen-grep-binprot, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msbackendsql |
singularity registry hpc automated addition for bioconductor-msbackendsql |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mscoreutils |
shpc-registry automated BioContainers addition for bioconductor-mscoreutils |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msd16s |
shpc-registry automated BioContainers addition for bioconductor-msd16s |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msdata |
shpc-registry automated BioContainers addition for bioconductor-msdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msdatahub |
singularity registry hpc automated addition for bioconductor-msdatahub |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mseadbi |
shpc-registry automated BioContainers addition for bioconductor-mseadbi |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msexperiment |
singularity registry hpc automated addition for bioconductor-msexperiment |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msfeatures |
shpc-registry automated BioContainers addition for bioconductor-msfeatures |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msgbsr |
shpc-registry automated BioContainers addition for bioconductor-msgbsr |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msgfgui |
shpc-registry automated BioContainers addition for bioconductor-msgfgui |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msgfplus |
shpc-registry automated BioContainers addition for bioconductor-msgfplus |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msigdb |
shpc-registry automated BioContainers addition for bioconductor-msigdb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msimpute |
shpc-registry automated BioContainers addition for bioconductor-msimpute |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mslp |
singularity registry hpc automated addition for bioconductor-mslp |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msmb |
shpc-registry automated BioContainers addition for bioconductor-msmb |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msmseda |
shpc-registry automated BioContainers addition for bioconductor-msmseda |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msmstests |
shpc-registry automated BioContainers addition for bioconductor-msmstests |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msnbase |
shpc-registry automated BioContainers addition for bioconductor-msnbase |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msnid |
shpc-registry automated BioContainers addition for bioconductor-msnid |
pandoc-server, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msprep |
shpc-registry automated BioContainers addition for bioconductor-msprep |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mspurity |
shpc-registry automated BioContainers addition for bioconductor-mspurity |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mspuritydata |
shpc-registry automated BioContainers addition for bioconductor-mspuritydata |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msqc1 |
shpc-registry automated BioContainers addition for bioconductor-msqc1 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msqrob2 |
shpc-registry automated BioContainers addition for bioconductor-msqrob2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msquality |
singularity registry hpc automated addition for bioconductor-msquality |
hb-info, tjbench, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstats |
shpc-registry automated BioContainers addition for bioconductor-msstats |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatsbig |
singularity registry hpc automated addition for bioconductor-msstatsbig |
protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatsbiodata |
shpc-registry automated BioContainers addition for bioconductor-msstatsbiodata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatsconvert |
shpc-registry automated BioContainers addition for bioconductor-msstatsconvert |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatslip |
shpc-registry automated BioContainers addition for bioconductor-msstatslip |
pandoc-server, pandoc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatslobd |
shpc-registry automated BioContainers addition for bioconductor-msstatslobd |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatsptm |
shpc-registry automated BioContainers addition for bioconductor-msstatsptm |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatsqc |
shpc-registry automated BioContainers addition for bioconductor-msstatsqc |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatsqcgui |
shpc-registry automated BioContainers addition for bioconductor-msstatsqcgui |
pandoc-citeproc, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatssamplesize |
shpc-registry automated BioContainers addition for bioconductor-msstatssamplesize |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatsshiny |
singularity registry hpc automated addition for bioconductor-msstatsshiny |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatstmt |
shpc-registry automated BioContainers addition for bioconductor-msstatstmt |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatstmtptm |
shpc-registry automated BioContainers addition for bioconductor-msstatstmtptm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mta10probeset.db |
shpc-registry automated BioContainers addition for bioconductor-mta10probeset.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mta10transcriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-mta10transcriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mtbls2 |
shpc-registry automated BioContainers addition for bioconductor-mtbls2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mtseeker |
shpc-registry automated BioContainers addition for bioconductor-mtseeker |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mtseekerdata |
shpc-registry automated BioContainers addition for bioconductor-mtseekerdata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu11ksuba.db |
shpc-registry automated BioContainers addition for bioconductor-mu11ksuba.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu11ksubacdf |
shpc-registry automated BioContainers addition for bioconductor-mu11ksubacdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu11ksubaprobe |
shpc-registry automated BioContainers addition for bioconductor-mu11ksubaprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu11ksubb.db |
shpc-registry automated BioContainers addition for bioconductor-mu11ksubb.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu11ksubbcdf |
shpc-registry automated BioContainers addition for bioconductor-mu11ksubbcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu11ksubbprobe |
shpc-registry automated BioContainers addition for bioconductor-mu11ksubbprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu15v1.db |
shpc-registry automated BioContainers addition for bioconductor-mu15v1.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu19ksuba.db |
shpc-registry automated BioContainers addition for bioconductor-mu19ksuba.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu19ksubacdf |
shpc-registry automated BioContainers addition for bioconductor-mu19ksubacdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu19ksubb.db |
shpc-registry automated BioContainers addition for bioconductor-mu19ksubb.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu19ksubbcdf |
shpc-registry automated BioContainers addition for bioconductor-mu19ksubbcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu19ksubc.db |
shpc-registry automated BioContainers addition for bioconductor-mu19ksubc.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu19ksubccdf |
shpc-registry automated BioContainers addition for bioconductor-mu19ksubccdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu22v3.db |
shpc-registry automated BioContainers addition for bioconductor-mu22v3.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu6500subacdf |
shpc-registry automated BioContainers addition for bioconductor-mu6500subacdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu6500subbcdf |
shpc-registry automated BioContainers addition for bioconductor-mu6500subbcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu6500subccdf |
shpc-registry automated BioContainers addition for bioconductor-mu6500subccdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu6500subdcdf |
shpc-registry automated BioContainers addition for bioconductor-mu6500subdcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mudata |
singularity registry hpc automated addition for bioconductor-mudata |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mugaexampledata |
shpc-registry automated BioContainers addition for bioconductor-mugaexampledata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mulcom |
shpc-registry automated BioContainers addition for bioconductor-mulcom |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mulder2012 |
shpc-registry automated BioContainers addition for bioconductor-mulder2012 |
giffilter, gifsponge, gifecho, gifinto, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/bioconductor-multiassayexperiment |
shpc-registry automated BioContainers addition for bioconductor-multiassayexperiment |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-multibac |
shpc-registry automated BioContainers addition for bioconductor-multibac |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-multiclust |
shpc-registry automated BioContainers addition for bioconductor-multiclust |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-multicrispr |
shpc-registry automated BioContainers addition for bioconductor-multicrispr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-multidataset |
shpc-registry automated BioContainers addition for bioconductor-multidataset |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-multigsea |
shpc-registry automated BioContainers addition for bioconductor-multigsea |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-multihiccompare |
shpc-registry automated BioContainers addition for bioconductor-multihiccompare |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-multimed |
shpc-registry automated BioContainers addition for bioconductor-multimed |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-multimir |
shpc-registry automated BioContainers addition for bioconductor-multimir |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-multimodalexperiment |
singularity registry hpc automated addition for bioconductor-multimodalexperiment |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-multiomicsviz |
shpc-registry automated BioContainers addition for bioconductor-multiomicsviz |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-multiscan |
shpc-registry automated BioContainers addition for bioconductor-multiscan |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-multisight |
shpc-registry automated BioContainers addition for bioconductor-multisight |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-multiwgcna |
singularity registry hpc automated addition for bioconductor-multiwgcna |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-multtest |
shpc-registry automated BioContainers addition for bioconductor-multtest |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mumosa |
shpc-registry automated BioContainers addition for bioconductor-mumosa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mungesumstats |
shpc-registry automated BioContainers addition for bioconductor-mungesumstats |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mus.musculus |
shpc-registry automated BioContainers addition for bioconductor-mus.musculus |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-muscat |
shpc-registry automated BioContainers addition for bioconductor-muscat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-muscdata |
shpc-registry automated BioContainers addition for bioconductor-muscdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-muscle |
shpc-registry automated BioContainers addition for bioconductor-muscle |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-musicatk |
shpc-registry automated BioContainers addition for bioconductor-musicatk |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mutationalpatterns |
shpc-registry automated BioContainers addition for bioconductor-mutationalpatterns |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mvcclass |
shpc-registry automated BioContainers addition for bioconductor-mvcclass |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mvgst |
shpc-registry automated BioContainers addition for bioconductor-mvgst |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mvoutdata |
shpc-registry automated BioContainers addition for bioconductor-mvoutdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mwastools |
shpc-registry automated BioContainers addition for bioconductor-mwastools |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mwgcod.db |
shpc-registry automated BioContainers addition for bioconductor-mwgcod.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mygene |
shpc-registry automated BioContainers addition for bioconductor-mygene |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-myvariant |
shpc-registry automated BioContainers addition for bioconductor-myvariant |
my_print_defaults, mysql_config, perror, wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mzid |
shpc-registry automated BioContainers addition for bioconductor-mzid |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mzr |
shpc-registry automated BioContainers addition for bioconductor-mzr |
nc-config, nccopy, ncdump, ncgen, ncgen3, uconv, gif2h5, h52gif, h5c++, h5copy |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nadfinder |
shpc-registry automated BioContainers addition for bioconductor-nadfinder |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nanomethviz |
shpc-registry automated BioContainers addition for bioconductor-nanomethviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nanoporernaseq |
shpc-registry automated BioContainers addition for bioconductor-nanoporernaseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nanostringdiff |
shpc-registry automated BioContainers addition for bioconductor-nanostringdiff |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nanostringnctools |
shpc-registry automated BioContainers addition for bioconductor-nanostringnctools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nanostringqcpro |
shpc-registry automated BioContainers addition for bioconductor-nanostringqcpro |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nanotator |
shpc-registry automated BioContainers addition for bioconductor-nanotator |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nanotube |
shpc-registry automated BioContainers addition for bioconductor-nanotube |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nanotubes |
shpc-registry automated BioContainers addition for bioconductor-nanotubes |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-narrowpeaks |
shpc-registry automated BioContainers addition for bioconductor-narrowpeaks |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nbamseq |
shpc-registry automated BioContainers addition for bioconductor-nbamseq |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nbsplice |
shpc-registry automated BioContainers addition for bioconductor-nbsplice |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ncdfflow |
shpc-registry automated BioContainers addition for bioconductor-ncdfflow |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ncgtw |
shpc-registry automated BioContainers addition for bioconductor-ncgtw |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ncigraph |
shpc-registry automated BioContainers addition for bioconductor-ncigraph |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ncigraphdata |
shpc-registry automated BioContainers addition for bioconductor-ncigraphdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ncrnatools |
shpc-registry automated BioContainers addition for bioconductor-ncrnatools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ndexr |
shpc-registry automated BioContainers addition for bioconductor-ndexr |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nearbynding |
shpc-registry automated BioContainers addition for bioconductor-nearbynding |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nebulosa |
shpc-registry automated BioContainers addition for bioconductor-nebulosa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-neighbornet |
shpc-registry automated BioContainers addition for bioconductor-neighbornet |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nem |
shpc-registry automated BioContainers addition for bioconductor-nem |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nempi |
shpc-registry automated BioContainers addition for bioconductor-nempi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nestlink |
shpc-registry automated BioContainers addition for bioconductor-nestlink |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-netactivity |
singularity registry hpc automated addition for bioconductor-netactivity |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-netactivitydata |
singularity registry hpc automated addition for bioconductor-netactivitydata |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-netbenchmark |
shpc-registry automated BioContainers addition for bioconductor-netbenchmark |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-netbiov |
shpc-registry automated BioContainers addition for bioconductor-netbiov |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-netboost |
shpc-registry automated BioContainers addition for bioconductor-netboost |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-netboxr |
shpc-registry automated BioContainers addition for bioconductor-netboxr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-netdx.examples |
shpc-registry automated BioContainers addition for bioconductor-netdx.examples |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-netdx |
shpc-registry automated BioContainers addition for bioconductor-netdx |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nethet |
shpc-registry automated BioContainers addition for bioconductor-nethet |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-netomics |
shpc-registry automated BioContainers addition for bioconductor-netomics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-netpathminer |
shpc-registry automated BioContainers addition for bioconductor-netpathminer |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-netprior |
shpc-registry automated BioContainers addition for bioconductor-netprior |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-netreg |
shpc-registry automated BioContainers addition for bioconductor-netreg |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-netresponse |
shpc-registry automated BioContainers addition for bioconductor-netresponse |
pandoc-server, glpsol, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-netsam |
shpc-registry automated BioContainers addition for bioconductor-netsam |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-netsmooth |
shpc-registry automated BioContainers addition for bioconductor-netsmooth |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-networkbma |
shpc-registry automated BioContainers addition for bioconductor-networkbma |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-netzoor |
singularity registry hpc automated addition for bioconductor-netzoor |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, Cytoscape, cytoscape.sh, gen_vmoptions.sh, jpackage, curve_keygen, cups-config, ippeveprinter, ipptool, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, jfr, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/bioconductor-neuca |
shpc-registry automated BioContainers addition for bioconductor-neuca |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-neve2006 |
shpc-registry automated BioContainers addition for bioconductor-neve2006 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-newwave |
shpc-registry automated BioContainers addition for bioconductor-newwave |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ngscopy |
shpc-registry automated BioContainers addition for bioconductor-ngscopy |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ngscopydata |
shpc-registry automated BioContainers addition for bioconductor-ngscopydata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ngsreports |
shpc-registry automated BioContainers addition for bioconductor-ngsreports |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nipalsmcia |
singularity registry hpc automated addition for bioconductor-nipalsmcia |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nnnorm |
shpc-registry automated BioContainers addition for bioconductor-nnnorm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nnsvg |
singularity registry hpc automated addition for bioconductor-nnsvg |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-noiseq |
shpc-registry automated BioContainers addition for bioconductor-noiseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nondetects |
shpc-registry automated BioContainers addition for bioconductor-nondetects |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-norce |
shpc-registry automated BioContainers addition for bioconductor-norce |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-normalize450k |
shpc-registry automated BioContainers addition for bioconductor-normalize450k |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-normalyzerde |
shpc-registry automated BioContainers addition for bioconductor-normalyzerde |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-normqpcr |
shpc-registry automated BioContainers addition for bioconductor-normqpcr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-normr |
shpc-registry automated BioContainers addition for bioconductor-normr |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-norway981.db |
shpc-registry automated BioContainers addition for bioconductor-norway981.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nparc |
shpc-registry automated BioContainers addition for bioconductor-nparc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-npgsea |
shpc-registry automated BioContainers addition for bioconductor-npgsea |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ntw |
shpc-registry automated BioContainers addition for bioconductor-ntw |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nucleosim |
shpc-registry automated BioContainers addition for bioconductor-nucleosim |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nucler |
shpc-registry automated BioContainers addition for bioconductor-nucler |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nucpos |
shpc-registry automated BioContainers addition for bioconductor-nucpos |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nudge |
shpc-registry automated BioContainers addition for bioconductor-nudge |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nugohs1a520180.db |
shpc-registry automated BioContainers addition for bioconductor-nugohs1a520180.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nugohs1a520180cdf |
shpc-registry automated BioContainers addition for bioconductor-nugohs1a520180cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nugohs1a520180probe |
shpc-registry automated BioContainers addition for bioconductor-nugohs1a520180probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nugomm1a520177.db |
shpc-registry automated BioContainers addition for bioconductor-nugomm1a520177.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nugomm1a520177cdf |
shpc-registry automated BioContainers addition for bioconductor-nugomm1a520177cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nugomm1a520177probe |
shpc-registry automated BioContainers addition for bioconductor-nugomm1a520177probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nullranges |
shpc-registry automated BioContainers addition for bioconductor-nullranges |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nullrangesdata |
shpc-registry automated BioContainers addition for bioconductor-nullrangesdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nupop |
shpc-registry automated BioContainers addition for bioconductor-nupop |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nxtirfcore |
shpc-registry automated BioContainers addition for bioconductor-nxtirfcore |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nxtirfdata |
shpc-registry automated BioContainers addition for bioconductor-nxtirfdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-obmiti |
shpc-registry automated BioContainers addition for bioconductor-obmiti |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-occugene |
shpc-registry automated BioContainers addition for bioconductor-occugene |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ocplus |
shpc-registry automated BioContainers addition for bioconductor-ocplus |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-oct4 |
shpc-registry automated BioContainers addition for bioconductor-oct4 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-octad.db |
singularity registry hpc automated addition for bioconductor-octad.db |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-oder |
shpc-registry automated BioContainers addition for bioconductor-oder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-odseq |
shpc-registry automated BioContainers addition for bioconductor-odseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ogre |
singularity registry hpc automated addition for bioconductor-ogre |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ogsa |
shpc-registry automated BioContainers addition for bioconductor-ogsa |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-oligo |
shpc-registry automated BioContainers addition for bioconductor-oligo |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-oligoclasses |
shpc-registry automated BioContainers addition for bioconductor-oligoclasses |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-oligodata |
shpc-registry automated BioContainers addition for bioconductor-oligodata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-olin |
shpc-registry automated BioContainers addition for bioconductor-olin |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-olingui |
shpc-registry automated BioContainers addition for bioconductor-olingui |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-omada |
singularity registry hpc automated addition for bioconductor-omada |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-omadb |
shpc-registry automated BioContainers addition for bioconductor-omadb |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-omicade4 |
shpc-registry automated BioContainers addition for bioconductor-omicade4 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-omiccircos |
shpc-registry automated BioContainers addition for bioconductor-omiccircos |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-omicplotr |
shpc-registry automated BioContainers addition for bioconductor-omicplotr |
pandoc-citeproc, pandoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-omicrexposome |
shpc-registry automated BioContainers addition for bioconductor-omicrexposome |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-omicslonda |
shpc-registry automated BioContainers addition for bioconductor-omicslonda |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-omicsmarker |
shpc-registry automated BioContainers addition for bioconductor-omicsmarker |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-omicsmlrepor |
singularity registry hpc automated addition for bioconductor-omicsmlrepor |
pandoc-lua, x86_64-conda-linux-gnu.cfg, pandoc-server, glpsol, pandoc, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-omicspca |
shpc-registry automated BioContainers addition for bioconductor-omicspca |
pdfattach, pdfdetach, pdffonts, pdfimages, pdfinfo, pdfseparate, pdftocairo, pdftohtml, pdftoppm, pdftops |
|
GITHUB
|
quay.io/biocontainers/bioconductor-omicspcadata |
shpc-registry automated BioContainers addition for bioconductor-omicspcadata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-omicsprint |
shpc-registry automated BioContainers addition for bioconductor-omicsprint |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-omicsviewer |
singularity registry hpc automated addition for bioconductor-omicsviewer |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-omixer |
shpc-registry automated BioContainers addition for bioconductor-omixer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-omnipathr |
shpc-registry automated BioContainers addition for bioconductor-omnipathr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ompbam |
singularity registry hpc automated addition for bioconductor-ompbam |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-omxplore |
singularity registry hpc automated addition for bioconductor-omxplore |
h5fuse, pandoc-lua, x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, pandoc-server, numpy-config, zipcmp, zipmerge, ziptool, h5delete, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls |
|
GITHUB
|
quay.io/biocontainers/bioconductor-onassis |
shpc-registry automated BioContainers addition for bioconductor-onassis |
extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/bioconductor-onassisjavalibs |
shpc-registry automated BioContainers addition for bioconductor-onassisjavalibs |
extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/bioconductor-oncomix |
shpc-registry automated BioContainers addition for bioconductor-oncomix |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-oncoscanr |
singularity registry hpc automated addition for bioconductor-oncoscanr |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-oncoscore |
shpc-registry automated BioContainers addition for bioconductor-oncoscore |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-oncosimulr |
shpc-registry automated BioContainers addition for bioconductor-oncosimulr |
glpsol, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-onesense |
shpc-registry automated BioContainers addition for bioconductor-onesense |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-onlinefdr |
shpc-registry automated BioContainers addition for bioconductor-onlinefdr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ontoproc |
shpc-registry automated BioContainers addition for bioconductor-ontoproc |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ontoprocdata |
shpc-registry automated BioContainers addition for bioconductor-ontoprocdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-opencyto |
shpc-registry automated BioContainers addition for bioconductor-opencyto |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-openprimer |
shpc-registry automated BioContainers addition for bioconductor-openprimer |
mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns, mafft-fftnsi |
|
GITHUB
|
quay.io/biocontainers/bioconductor-openprimerui |
shpc-registry automated BioContainers addition for bioconductor-openprimerui |
mafft-sparsecore.rb, pandoc-citeproc, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns |
|
GITHUB
|
quay.io/biocontainers/bioconductor-openstats |
shpc-registry automated BioContainers addition for bioconductor-openstats |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-operonhumanv3.db |
shpc-registry automated BioContainers addition for bioconductor-operonhumanv3.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-opossom |
shpc-registry automated BioContainers addition for bioconductor-opossom |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-oppar |
shpc-registry automated BioContainers addition for bioconductor-oppar |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-oppti |
shpc-registry automated BioContainers addition for bioconductor-oppti |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-optimalflow |
shpc-registry automated BioContainers addition for bioconductor-optimalflow |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-optimalflowdata |
shpc-registry automated BioContainers addition for bioconductor-optimalflowdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-opweight |
shpc-registry automated BioContainers addition for bioconductor-opweight |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-orderedlist |
shpc-registry automated BioContainers addition for bioconductor-orderedlist |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-orfhunter |
shpc-registry automated BioContainers addition for bioconductor-orfhunter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-orfik |
shpc-registry automated BioContainers addition for bioconductor-orfik |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.ag.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.ag.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.at.tair.db |
shpc-registry automated BioContainers addition for bioconductor-org.at.tair.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.bt.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.bt.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.ce.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.ce.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.cf.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.cf.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.dm.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.dm.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.dr.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.dr.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.eck12.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.eck12.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.ecsakai.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.ecsakai.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.gg.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.gg.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.hs.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.hs.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.mm.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.mm.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.mmu.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.mmu.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.mxanthus.db |
shpc-registry automated BioContainers addition for bioconductor-org.mxanthus.db |
pandoc-server, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.pf.plasmo.db |
shpc-registry automated BioContainers addition for bioconductor-org.pf.plasmo.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.pt.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.pt.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.rn.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.rn.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.sc.sgd.db |
shpc-registry automated BioContainers addition for bioconductor-org.sc.sgd.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.ss.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.ss.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.xl.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.xl.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-organism.dplyr |
shpc-registry automated BioContainers addition for bioconductor-organism.dplyr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-organismdbi |
shpc-registry automated BioContainers addition for bioconductor-organismdbi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-orthogene |
shpc-registry automated BioContainers addition for bioconductor-orthogene |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-orthology.eg.db |
shpc-registry automated BioContainers addition for bioconductor-orthology.eg.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-orthos |
singularity registry hpc automated addition for bioconductor-orthos |
protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-orthosdata |
singularity registry hpc automated addition for bioconductor-orthosdata |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-osat |
shpc-registry automated BioContainers addition for bioconductor-osat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-oscope |
shpc-registry automated BioContainers addition for bioconductor-oscope |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-otubase |
shpc-registry automated BioContainers addition for bioconductor-otubase |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-outlierd |
shpc-registry automated BioContainers addition for bioconductor-outlierd |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-outrider |
shpc-registry automated BioContainers addition for bioconductor-outrider |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-outsplice |
singularity registry hpc automated addition for bioconductor-outsplice |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-oveseg |
shpc-registry automated BioContainers addition for bioconductor-oveseg |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-paa |
shpc-registry automated BioContainers addition for bioconductor-paa |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-packfinder |
shpc-registry automated BioContainers addition for bioconductor-packfinder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-padma |
shpc-registry automated BioContainers addition for bioconductor-padma |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-padog |
shpc-registry automated BioContainers addition for bioconductor-padog |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-paeg1acdf |
shpc-registry automated BioContainers addition for bioconductor-paeg1acdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-paeg1aprobe |
shpc-registry automated BioContainers addition for bioconductor-paeg1aprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pagerank |
shpc-registry automated BioContainers addition for bioconductor-pagerank |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pairadise |
shpc-registry automated BioContainers addition for bioconductor-pairadise |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-paircompviz |
shpc-registry automated BioContainers addition for bioconductor-paircompviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pairedgsea |
singularity registry hpc automated addition for bioconductor-pairedgsea |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pairkat |
shpc-registry automated BioContainers addition for bioconductor-pairkat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pandar |
shpc-registry automated BioContainers addition for bioconductor-pandar |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-panelcn.mops |
shpc-registry automated BioContainers addition for bioconductor-panelcn.mops |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pannbuilder |
shpc-registry automated BioContainers addition for bioconductor-pannbuilder |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-panomir |
singularity registry hpc automated addition for bioconductor-panomir |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-panp |
shpc-registry automated BioContainers addition for bioconductor-panp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-panr |
shpc-registry automated BioContainers addition for bioconductor-panr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-panther.db |
shpc-registry automated BioContainers addition for bioconductor-panther.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-panvizgenerator |
shpc-registry automated BioContainers addition for bioconductor-panvizgenerator |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-papi |
shpc-registry automated BioContainers addition for bioconductor-papi |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-parathyroidse |
shpc-registry automated BioContainers addition for bioconductor-parathyroidse |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pareg |
singularity registry hpc automated addition for bioconductor-pareg |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-parglms |
shpc-registry automated BioContainers addition for bioconductor-parglms |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-parody |
shpc-registry automated BioContainers addition for bioconductor-parody |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-partcnv |
singularity registry hpc automated addition for bioconductor-partcnv |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-partheenmetadata.db |
shpc-registry automated BioContainers addition for bioconductor-partheenmetadata.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pasilla |
shpc-registry automated BioContainers addition for bioconductor-pasilla |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pasillabamsubset |
shpc-registry automated BioContainers addition for bioconductor-pasillabamsubset |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pasillatranscriptexpr |
shpc-registry automated BioContainers addition for bioconductor-pasillatranscriptexpr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-past |
shpc-registry automated BioContainers addition for bioconductor-past |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-path2ppi |
shpc-registry automated BioContainers addition for bioconductor-path2ppi |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pathifier |
shpc-registry automated BioContainers addition for bioconductor-pathifier |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pathnet |
shpc-registry automated BioContainers addition for bioconductor-pathnet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pathnetdata |
shpc-registry automated BioContainers addition for bioconductor-pathnetdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pathostat |
shpc-registry automated BioContainers addition for bioconductor-pathostat |
pandoc-citeproc, pandoc, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pathprint |
shpc-registry automated BioContainers addition for bioconductor-pathprint |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pathprintgeodata |
shpc-registry automated BioContainers addition for bioconductor-pathprintgeodata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pathrender |
shpc-registry automated BioContainers addition for bioconductor-pathrender |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pathvar |
shpc-registry automated BioContainers addition for bioconductor-pathvar |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pathview |
shpc-registry automated BioContainers addition for bioconductor-pathview |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pathwaypca |
shpc-registry automated BioContainers addition for bioconductor-pathwaypca |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pathwaysplice |
shpc-registry automated BioContainers addition for bioconductor-pathwaysplice |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-paxtoolsr |
shpc-registry automated BioContainers addition for bioconductor-paxtoolsr |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pbase |
shpc-registry automated BioContainers addition for bioconductor-pbase |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pbcmc |
shpc-registry automated BioContainers addition for bioconductor-pbcmc |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcaexplorer |
shpc-registry automated BioContainers addition for bioconductor-pcaexplorer |
pandoc-citeproc, pandoc, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcagopromoter.hs.hg19 |
shpc-registry automated BioContainers addition for bioconductor-pcagopromoter.hs.hg19 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcagopromoter |
shpc-registry automated BioContainers addition for bioconductor-pcagopromoter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcagopromoter.mm.mm9 |
shpc-registry automated BioContainers addition for bioconductor-pcagopromoter.mm.mm9 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcagopromoter.rn.rn4 |
shpc-registry automated BioContainers addition for bioconductor-pcagopromoter.rn.rn4 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcamethods |
shpc-registry automated BioContainers addition for bioconductor-pcamethods |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcan |
shpc-registry automated BioContainers addition for bioconductor-pcan |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcatools |
shpc-registry automated BioContainers addition for bioconductor-pcatools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pchicdata |
shpc-registry automated BioContainers addition for bioconductor-pchicdata |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcot2 |
shpc-registry automated BioContainers addition for bioconductor-pcot2 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcpheno |
shpc-registry automated BioContainers addition for bioconductor-pcpheno |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcxn |
shpc-registry automated BioContainers addition for bioconductor-pcxn |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcxndata |
shpc-registry automated BioContainers addition for bioconductor-pcxndata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pdatk |
shpc-registry automated BioContainers addition for bioconductor-pdatk |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pdinfobuilder |
shpc-registry automated BioContainers addition for bioconductor-pdinfobuilder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-peacoqc |
shpc-registry automated BioContainers addition for bioconductor-peacoqc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-peakpanther |
shpc-registry automated BioContainers addition for bioconductor-peakpanther |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-peca |
shpc-registry automated BioContainers addition for bioconductor-peca |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-peco |
shpc-registry automated BioContainers addition for bioconductor-peco |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pedbarrayv10.db |
shpc-registry automated BioContainers addition for bioconductor-pedbarrayv10.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pedbarrayv9.db |
shpc-registry automated BioContainers addition for bioconductor-pedbarrayv9.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pengls |
shpc-registry automated BioContainers addition for bioconductor-pengls |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pepdat |
shpc-registry automated BioContainers addition for bioconductor-pepdat |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pepsnmr |
shpc-registry automated BioContainers addition for bioconductor-pepsnmr |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pepsnmrdata |
shpc-registry automated BioContainers addition for bioconductor-pepsnmrdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pepstat |
shpc-registry automated BioContainers addition for bioconductor-pepstat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pepxmltab |
shpc-registry automated BioContainers addition for bioconductor-pepxmltab |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-perfect |
shpc-registry automated BioContainers addition for bioconductor-perfect |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-periodicdna |
shpc-registry automated BioContainers addition for bioconductor-periodicdna |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-perturbatr |
shpc-registry automated BioContainers addition for bioconductor-perturbatr |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pfam.db |
shpc-registry automated BioContainers addition for bioconductor-pfam.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pfamanalyzer |
singularity registry hpc automated addition for bioconductor-pfamanalyzer |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pfp |
shpc-registry automated BioContainers addition for bioconductor-pfp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pga |
shpc-registry automated BioContainers addition for bioconductor-pga |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pgca |
shpc-registry automated BioContainers addition for bioconductor-pgca |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pgsea |
shpc-registry automated BioContainers addition for bioconductor-pgsea |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phantasus |
shpc-registry automated BioContainers addition for bioconductor-phantasus |
protoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phantasuslite |
singularity registry hpc automated addition for bioconductor-phantasuslite |
pcre2posix_test, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pharmacogx |
shpc-registry automated BioContainers addition for bioconductor-pharmacogx |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-phastcons30way.ucsc.hg38 |
shpc-registry automated BioContainers addition for bioconductor-phastcons30way.ucsc.hg38 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-phastcons35way.ucsc.mm39 |
singularity registry hpc automated addition for bioconductor-phastcons35way.ucsc.mm39 |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phastcons7way.ucsc.hg38 |
shpc-registry automated BioContainers addition for bioconductor-phastcons7way.ucsc.hg38 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-phemd |
shpc-registry automated BioContainers addition for bioconductor-phemd |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phenodist |
shpc-registry automated BioContainers addition for bioconductor-phenodist |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phenogeneranker |
shpc-registry automated BioContainers addition for bioconductor-phenogeneranker |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-phenomis |
singularity registry hpc automated addition for bioconductor-phenomis |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phenopath |
shpc-registry automated BioContainers addition for bioconductor-phenopath |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phenotest |
shpc-registry automated BioContainers addition for bioconductor-phenotest |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-phenstat |
shpc-registry automated BioContainers addition for bioconductor-phenstat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-philr |
shpc-registry automated BioContainers addition for bioconductor-philr |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phipdata |
shpc-registry automated BioContainers addition for bioconductor-phipdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-phosphonormalizer |
shpc-registry automated BioContainers addition for bioconductor-phosphonormalizer |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phosr |
shpc-registry automated BioContainers addition for bioconductor-phosr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-phylop35way.ucsc.mm39 |
singularity registry hpc automated addition for bioconductor-phylop35way.ucsc.mm39 |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phyloprofile |
shpc-registry automated BioContainers addition for bioconductor-phyloprofile |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phyloprofiledata |
shpc-registry automated BioContainers addition for bioconductor-phyloprofiledata |
pandoc-server, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phyloseq |
shpc-registry automated BioContainers addition for bioconductor-phyloseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pi |
shpc-registry automated BioContainers addition for bioconductor-pi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-piano |
shpc-registry automated BioContainers addition for bioconductor-piano |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pickgene |
shpc-registry automated BioContainers addition for bioconductor-pickgene |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pics |
shpc-registry automated BioContainers addition for bioconductor-pics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pig.db0 |
shpc-registry automated BioContainers addition for bioconductor-pig.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pigengene |
shpc-registry automated BioContainers addition for bioconductor-pigengene |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ping |
shpc-registry automated BioContainers addition for bioconductor-ping |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pint |
shpc-registry automated BioContainers addition for bioconductor-pint |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pipecomp |
shpc-registry automated BioContainers addition for bioconductor-pipecomp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pipeframe |
shpc-registry automated BioContainers addition for bioconductor-pipeframe |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pipets |
singularity registry hpc automated addition for bioconductor-pipets |
x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-piuma |
singularity registry hpc automated addition for bioconductor-piuma |
pandoc-lua, x86_64-conda-linux-gnu.cfg, pandoc-server, idle3.13, pydoc3.13, python3.13, python3.13-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pkgdeptools |
shpc-registry automated BioContainers addition for bioconductor-pkgdeptools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-planet |
shpc-registry automated BioContainers addition for bioconductor-planet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-planttfhunter |
singularity registry hpc automated addition for bioconductor-planttfhunter |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-plasfia |
shpc-registry automated BioContainers addition for bioconductor-plasfia |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-plasmodiumanophelescdf |
shpc-registry automated BioContainers addition for bioconductor-plasmodiumanophelescdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-plasmodiumanophelesprobe |
shpc-registry automated BioContainers addition for bioconductor-plasmodiumanophelesprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-plasmut |
singularity registry hpc automated addition for bioconductor-plasmut |
pcre2posix_test, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-platecore |
shpc-registry automated BioContainers addition for bioconductor-platecore |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-plethy |
shpc-registry automated BioContainers addition for bioconductor-plethy |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-plgem |
shpc-registry automated BioContainers addition for bioconductor-plgem |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-plier |
shpc-registry automated BioContainers addition for bioconductor-plier |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-plogo2 |
shpc-registry automated BioContainers addition for bioconductor-plogo2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-plotgardener |
shpc-registry automated BioContainers addition for bioconductor-plotgardener |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-plotgardenerdata |
shpc-registry automated BioContainers addition for bioconductor-plotgardenerdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-plotgrouper |
shpc-registry automated BioContainers addition for bioconductor-plotgrouper |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-plpe |
shpc-registry automated BioContainers addition for bioconductor-plpe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-plrs |
shpc-registry automated BioContainers addition for bioconductor-plrs |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-plw |
shpc-registry automated BioContainers addition for bioconductor-plw |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-plyinteractions |
singularity registry hpc automated addition for bioconductor-plyinteractions |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-plyranges |
shpc-registry automated BioContainers addition for bioconductor-plyranges |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pmm |
shpc-registry automated BioContainers addition for bioconductor-pmm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pmp |
shpc-registry automated BioContainers addition for bioconductor-pmp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pocrcannotation.db |
shpc-registry automated BioContainers addition for bioconductor-pocrcannotation.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-podcall |
shpc-registry automated BioContainers addition for bioconductor-podcall |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-podkat |
shpc-registry automated BioContainers addition for bioconductor-podkat |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pogos |
shpc-registry automated BioContainers addition for bioconductor-pogos |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-polyester |
shpc-registry automated BioContainers addition for bioconductor-polyester |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-polyfit |
shpc-registry automated BioContainers addition for bioconductor-polyfit |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-polyphen.hsapiens.dbsnp131 |
shpc-registry automated BioContainers addition for bioconductor-polyphen.hsapiens.dbsnp131 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-poma |
shpc-registry automated BioContainers addition for bioconductor-poma |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-poplarcdf |
shpc-registry automated BioContainers addition for bioconductor-poplarcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-poplarprobe |
shpc-registry automated BioContainers addition for bioconductor-poplarprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-porcine.db |
shpc-registry automated BioContainers addition for bioconductor-porcine.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-porcinecdf |
shpc-registry automated BioContainers addition for bioconductor-porcinecdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-porcineprobe |
shpc-registry automated BioContainers addition for bioconductor-porcineprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-post |
shpc-registry automated BioContainers addition for bioconductor-post |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-potra |
shpc-registry automated BioContainers addition for bioconductor-potra |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-powerexplorer |
shpc-registry automated BioContainers addition for bioconductor-powerexplorer |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-powertcr |
shpc-registry automated BioContainers addition for bioconductor-powertcr |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-powsc |
shpc-registry automated BioContainers addition for bioconductor-powsc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ppcseq |
shpc-registry automated BioContainers addition for bioconductor-ppcseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ppidata |
shpc-registry automated BioContainers addition for bioconductor-ppidata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ppinfer |
shpc-registry automated BioContainers addition for bioconductor-ppinfer |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ppistats |
shpc-registry automated BioContainers addition for bioconductor-ppistats |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pqsfinder |
shpc-registry automated BioContainers addition for bioconductor-pqsfinder |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-prada |
shpc-registry automated BioContainers addition for bioconductor-prada |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pram |
shpc-registry automated BioContainers addition for bioconductor-pram |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-prebs |
shpc-registry automated BioContainers addition for bioconductor-prebs |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-prebsdata |
shpc-registry automated BioContainers addition for bioconductor-prebsdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-precisetad |
shpc-registry automated BioContainers addition for bioconductor-precisetad |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-precisetadhub |
shpc-registry automated BioContainers addition for bioconductor-precisetadhub |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-precisiontrialdrawer |
shpc-registry automated BioContainers addition for bioconductor-precisiontrialdrawer |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-preda |
shpc-registry automated BioContainers addition for bioconductor-preda |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-predasampledata |
shpc-registry automated BioContainers addition for bioconductor-predasampledata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-predictionet |
shpc-registry automated BioContainers addition for bioconductor-predictionet |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-preprocesscore |
shpc-registry automated BioContainers addition for bioconductor-preprocesscore |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-primeviewcdf |
shpc-registry automated BioContainers addition for bioconductor-primeviewcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-primeviewprobe |
shpc-registry automated BioContainers addition for bioconductor-primeviewprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-primirtss |
shpc-registry automated BioContainers addition for bioconductor-primirtss |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-prince |
shpc-registry automated BioContainers addition for bioconductor-prince |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-prize |
shpc-registry automated BioContainers addition for bioconductor-prize |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-proactiv |
shpc-registry automated BioContainers addition for bioconductor-proactiv |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-probamr |
shpc-registry automated BioContainers addition for bioconductor-probamr |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-probatch |
shpc-registry automated BioContainers addition for bioconductor-probatch |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-process |
shpc-registry automated BioContainers addition for bioconductor-process |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-procoil |
shpc-registry automated BioContainers addition for bioconductor-procoil |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-proda |
shpc-registry automated BioContainers addition for bioconductor-proda |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-prodata |
shpc-registry automated BioContainers addition for bioconductor-prodata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-profia |
shpc-registry automated BioContainers addition for bioconductor-profia |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-profileplyr |
shpc-registry automated BioContainers addition for bioconductor-profileplyr |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-profilescoredist |
shpc-registry automated BioContainers addition for bioconductor-profilescoredist |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-progeny |
shpc-registry automated BioContainers addition for bioconductor-progeny |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-projectr |
shpc-registry automated BioContainers addition for bioconductor-projectr |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-proloc |
shpc-registry automated BioContainers addition for bioconductor-proloc |
zipcmp, zipmerge, ziptool, gif2hdf, glpsol, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-prolocdata |
shpc-registry automated BioContainers addition for bioconductor-prolocdata |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-prolocgui |
shpc-registry automated BioContainers addition for bioconductor-prolocgui |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-promise |
shpc-registry automated BioContainers addition for bioconductor-promise |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-proper |
shpc-registry automated BioContainers addition for bioconductor-proper |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-props |
shpc-registry automated BioContainers addition for bioconductor-props |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-prostar |
shpc-registry automated BioContainers addition for bioconductor-prostar |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-prostatecancercamcap |
shpc-registry automated BioContainers addition for bioconductor-prostatecancercamcap |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-prostatecancergrasso |
shpc-registry automated BioContainers addition for bioconductor-prostatecancergrasso |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-prostatecancerstockholm |
shpc-registry automated BioContainers addition for bioconductor-prostatecancerstockholm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-prostatecancertaylor |
shpc-registry automated BioContainers addition for bioconductor-prostatecancertaylor |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-prostatecancervarambally |
shpc-registry automated BioContainers addition for bioconductor-prostatecancervarambally |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-prot2d |
shpc-registry automated BioContainers addition for bioconductor-prot2d |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-proteasy |
singularity registry hpc automated addition for bioconductor-proteasy |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, jpackage, cups-config, ippeveprinter, ipptool, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner |
|
GITHUB
|
quay.io/biocontainers/bioconductor-proteinprofiles |
shpc-registry automated BioContainers addition for bioconductor-proteinprofiles |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-proteodisco |
shpc-registry automated BioContainers addition for bioconductor-proteodisco |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-proteomicsannotationhubdata |
shpc-registry automated BioContainers addition for bioconductor-proteomicsannotationhubdata |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-proteomm |
shpc-registry automated BioContainers addition for bioconductor-proteomm |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-proteoqc |
shpc-registry automated BioContainers addition for bioconductor-proteoqc |
pandoc-citeproc, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-protgear |
singularity registry hpc automated addition for bioconductor-protgear |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, pandoc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-protgenerics |
shpc-registry automated BioContainers addition for bioconductor-protgenerics |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-psea |
shpc-registry automated BioContainers addition for bioconductor-psea |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-psichomics |
shpc-registry automated BioContainers addition for bioconductor-psichomics |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-psicquic |
shpc-registry automated BioContainers addition for bioconductor-psicquic |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-psmatch |
singularity registry hpc automated addition for bioconductor-psmatch |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-psygenet2r |
shpc-registry automated BioContainers addition for bioconductor-psygenet2r |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ptairdata |
shpc-registry automated BioContainers addition for bioconductor-ptairdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ptairms |
shpc-registry automated BioContainers addition for bioconductor-ptairms |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pth2o2lipids |
shpc-registry automated BioContainers addition for bioconductor-pth2o2lipids |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pubscore |
shpc-registry automated BioContainers addition for bioconductor-pubscore |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pulsedsilac |
shpc-registry automated BioContainers addition for bioconductor-pulsedsilac |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-puma |
shpc-registry automated BioContainers addition for bioconductor-puma |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pumadata |
shpc-registry automated BioContainers addition for bioconductor-pumadata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-purecn |
shpc-registry automated BioContainers addition for bioconductor-purecn |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pvac |
shpc-registry automated BioContainers addition for bioconductor-pvac |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pvca |
shpc-registry automated BioContainers addition for bioconductor-pvca |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pviz |
shpc-registry automated BioContainers addition for bioconductor-pviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pwmenrich.hsapiens.background |
shpc-registry automated BioContainers addition for bioconductor-pwmenrich.hsapiens.background |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pwmenrich |
shpc-registry automated BioContainers addition for bioconductor-pwmenrich |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pwmenrich.mmusculus.background |
shpc-registry automated BioContainers addition for bioconductor-pwmenrich.mmusculus.background |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pwomics |
shpc-registry automated BioContainers addition for bioconductor-pwomics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pwrewas.data |
shpc-registry automated BioContainers addition for bioconductor-pwrewas.data |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pwrewas |
shpc-registry automated BioContainers addition for bioconductor-pwrewas |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-qckitfastq |
shpc-registry automated BioContainers addition for bioconductor-qckitfastq |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qcmetrics |
shpc-registry automated BioContainers addition for bioconductor-qcmetrics |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qdnaseq.hg19 |
shpc-registry automated BioContainers addition for bioconductor-qdnaseq.hg19 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-qdnaseq |
shpc-registry automated BioContainers addition for bioconductor-qdnaseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-qdnaseq.mm10 |
shpc-registry automated BioContainers addition for bioconductor-qdnaseq.mm10 |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qfeatures |
shpc-registry automated BioContainers addition for bioconductor-qfeatures |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-qmtools |
singularity registry hpc automated addition for bioconductor-qmtools |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qpcrnorm |
shpc-registry automated BioContainers addition for bioconductor-qpcrnorm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-qpgraph |
shpc-registry automated BioContainers addition for bioconductor-qpgraph |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-qplexanalyzer |
shpc-registry automated BioContainers addition for bioconductor-qplexanalyzer |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qplexdata |
shpc-registry automated BioContainers addition for bioconductor-qplexdata |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qrqc |
shpc-registry automated BioContainers addition for bioconductor-qrqc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-qsea |
shpc-registry automated BioContainers addition for bioconductor-qsea |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qsmooth |
shpc-registry automated BioContainers addition for bioconductor-qsmooth |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qsutils |
shpc-registry automated BioContainers addition for bioconductor-qsutils |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qsvar |
singularity registry hpc automated addition for bioconductor-qsvar |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qtlexperiment |
singularity registry hpc automated addition for bioconductor-qtlexperiment |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qtlizer |
shpc-registry automated BioContainers addition for bioconductor-qtlizer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-qualifier |
shpc-registry automated BioContainers addition for bioconductor-qualifier |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-quantiseqr |
shpc-registry automated BioContainers addition for bioconductor-quantiseqr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-quantro |
shpc-registry automated BioContainers addition for bioconductor-quantro |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-quantsmooth |
shpc-registry automated BioContainers addition for bioconductor-quantsmooth |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-quartpac |
shpc-registry automated BioContainers addition for bioconductor-quartpac |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-quasr |
shpc-registry automated BioContainers addition for bioconductor-quasr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-quaternaryprod |
shpc-registry automated BioContainers addition for bioconductor-quaternaryprod |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qubic |
shpc-registry automated BioContainers addition for bioconductor-qubic |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-qubicdata |
shpc-registry automated BioContainers addition for bioconductor-qubicdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-qusage |
shpc-registry automated BioContainers addition for bioconductor-qusage |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qvalue |
shpc-registry automated BioContainers addition for bioconductor-qvalue |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-r10kcod.db |
shpc-registry automated BioContainers addition for bioconductor-r10kcod.db |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-r3cpet |
shpc-registry automated BioContainers addition for bioconductor-r3cpet |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-r3cseq |
shpc-registry automated BioContainers addition for bioconductor-r3cseq |
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GITHUB
|
quay.io/biocontainers/bioconductor-r453plus1toolbox |
shpc-registry automated BioContainers addition for bioconductor-r453plus1toolbox |
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GITHUB
|
quay.io/biocontainers/bioconductor-r4rna |
shpc-registry automated BioContainers addition for bioconductor-r4rna |
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GITHUB
|
quay.io/biocontainers/bioconductor-radiogx |
shpc-registry automated BioContainers addition for bioconductor-radiogx |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rae230a.db |
shpc-registry automated BioContainers addition for bioconductor-rae230a.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rae230acdf |
shpc-registry automated BioContainers addition for bioconductor-rae230acdf |
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GITHUB
|
quay.io/biocontainers/bioconductor-rae230aprobe |
shpc-registry automated BioContainers addition for bioconductor-rae230aprobe |
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GITHUB
|
quay.io/biocontainers/bioconductor-rae230b.db |
shpc-registry automated BioContainers addition for bioconductor-rae230b.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rae230bcdf |
shpc-registry automated BioContainers addition for bioconductor-rae230bcdf |
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GITHUB
|
quay.io/biocontainers/bioconductor-rae230bprobe |
shpc-registry automated BioContainers addition for bioconductor-rae230bprobe |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-raerdata |
singularity registry hpc automated addition for bioconductor-raerdata |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-raex10stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-raex10stprobeset.db |
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GITHUB
|
quay.io/biocontainers/bioconductor-raex10sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-raex10sttranscriptcluster.db |
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GITHUB
|
quay.io/biocontainers/bioconductor-raexexonprobesetlocation |
shpc-registry automated BioContainers addition for bioconductor-raexexonprobesetlocation |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-ragene10stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-ragene10stprobeset.db |
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GITHUB
|
quay.io/biocontainers/bioconductor-ragene10sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-ragene10sttranscriptcluster.db |
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GITHUB
|
quay.io/biocontainers/bioconductor-ragene10stv1cdf |
shpc-registry automated BioContainers addition for bioconductor-ragene10stv1cdf |
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GITHUB
|
quay.io/biocontainers/bioconductor-ragene10stv1probe |
shpc-registry automated BioContainers addition for bioconductor-ragene10stv1probe |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-ragene11stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-ragene11stprobeset.db |
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GITHUB
|
quay.io/biocontainers/bioconductor-ragene11sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-ragene11sttranscriptcluster.db |
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GITHUB
|
quay.io/biocontainers/bioconductor-ragene20stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-ragene20stprobeset.db |
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GITHUB
|
quay.io/biocontainers/bioconductor-ragene20sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-ragene20sttranscriptcluster.db |
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GITHUB
|
quay.io/biocontainers/bioconductor-ragene21stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-ragene21stprobeset.db |
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GITHUB
|
quay.io/biocontainers/bioconductor-ragene21sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-ragene21sttranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-raggedexperiment |
shpc-registry automated BioContainers addition for bioconductor-raggedexperiment |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-raids |
singularity registry hpc automated addition for bioconductor-raids |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rain |
shpc-registry automated BioContainers addition for bioconductor-rain |
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GITHUB
|
quay.io/biocontainers/bioconductor-rama |
shpc-registry automated BioContainers addition for bioconductor-rama |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ramigo |
shpc-registry automated BioContainers addition for bioconductor-ramigo |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ramr |
shpc-registry automated BioContainers addition for bioconductor-ramr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ramwas |
shpc-registry automated BioContainers addition for bioconductor-ramwas |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-randomwalkrestartmh |
shpc-registry automated BioContainers addition for bioconductor-randomwalkrestartmh |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-randpack |
shpc-registry automated BioContainers addition for bioconductor-randpack |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-randrotation |
shpc-registry automated BioContainers addition for bioconductor-randrotation |
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GITHUB
|
quay.io/biocontainers/bioconductor-rankprod |
shpc-registry automated BioContainers addition for bioconductor-rankprod |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-raresim |
singularity registry hpc automated addition for bioconductor-raresim |
2to3-3.11, f2py3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rarevariantvis |
shpc-registry automated BioContainers addition for bioconductor-rarevariantvis |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rariant |
shpc-registry automated BioContainers addition for bioconductor-rariant |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rarr |
singularity registry hpc automated addition for bioconductor-rarr |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rat.db0 |
shpc-registry automated BioContainers addition for bioconductor-rat.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rat2302.db |
shpc-registry automated BioContainers addition for bioconductor-rat2302.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rat2302cdf |
shpc-registry automated BioContainers addition for bioconductor-rat2302cdf |
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GITHUB
|
quay.io/biocontainers/bioconductor-rat2302frmavecs |
shpc-registry automated BioContainers addition for bioconductor-rat2302frmavecs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rat2302probe |
shpc-registry automated BioContainers addition for bioconductor-rat2302probe |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-ratchrloc |
shpc-registry automated BioContainers addition for bioconductor-ratchrloc |
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GITHUB
|
quay.io/biocontainers/bioconductor-rattoxfxcdf |
shpc-registry automated BioContainers addition for bioconductor-rattoxfxcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rattoxfxprobe |
shpc-registry automated BioContainers addition for bioconductor-rattoxfxprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rattus.norvegicus |
shpc-registry automated BioContainers addition for bioconductor-rattus.norvegicus |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rawrr |
shpc-registry automated BioContainers addition for bioconductor-rawrr |
aprofutil, csc, csi, illinkanalyzer, mono-hang-watchdog, vbc, mono-package-runtime, sgen-grep-binprot, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rbcbook1 |
shpc-registry automated BioContainers addition for bioconductor-rbcbook1 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rbec |
shpc-registry automated BioContainers addition for bioconductor-rbec |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rbgl |
shpc-registry automated BioContainers addition for bioconductor-rbgl |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rbioformats |
singularity registry hpc automated addition for bioconductor-rbioformats |
jwebserver, hb-info, jpackage, tjbench, cups-config, ippeveprinter, ipptool, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, pandoc, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rbioinf |
shpc-registry automated BioContainers addition for bioconductor-rbioinf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rbiopaxparser |
shpc-registry automated BioContainers addition for bioconductor-rbiopaxparser |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rblast |
singularity registry hpc automated addition for bioconductor-rblast |
x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rbm |
shpc-registry automated BioContainers addition for bioconductor-rbm |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rbowtie |
shpc-registry automated BioContainers addition for bioconductor-rbowtie |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rbowtie2 |
shpc-registry automated BioContainers addition for bioconductor-rbowtie2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rbsurv |
shpc-registry automated BioContainers addition for bioconductor-rbsurv |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rbwa |
singularity registry hpc automated addition for bioconductor-rbwa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcade |
shpc-registry automated BioContainers addition for bioconductor-rcade |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcas |
shpc-registry automated BioContainers addition for bioconductor-rcas |
pandoc-citeproc, pandoc, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcaspar |
shpc-registry automated BioContainers addition for bioconductor-rcaspar |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcellminer |
shpc-registry automated BioContainers addition for bioconductor-rcellminer |
extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcellminerdata |
shpc-registry automated BioContainers addition for bioconductor-rcellminerdata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcgh |
shpc-registry automated BioContainers addition for bioconductor-rcgh |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rchemcpp |
shpc-registry automated BioContainers addition for bioconductor-rchemcpp |
croco-0.6-config, csslint-0.6, g-ir-doc-tool, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rchyoptimyx |
shpc-registry automated BioContainers addition for bioconductor-rchyoptimyx |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcistarget |
shpc-registry automated BioContainers addition for bioconductor-rcistarget |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcm |
shpc-registry automated BioContainers addition for bioconductor-rcm |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcollectl |
singularity registry hpc automated addition for bioconductor-rcollectl |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcpi |
shpc-registry automated BioContainers addition for bioconductor-rcpi |
rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, jfr, jaotc, aserver, jdeprscan, jhsdb |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcsl |
shpc-registry automated BioContainers addition for bioconductor-rcsl |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcwl |
shpc-registry automated BioContainers addition for bioconductor-rcwl |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcwlpipelines |
shpc-registry automated BioContainers addition for bioconductor-rcwlpipelines |
node, npm, npx, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcx |
singularity registry hpc automated addition for bioconductor-rcx |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcy3 |
shpc-registry automated BioContainers addition for bioconductor-rcy3 |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcyjs |
shpc-registry automated BioContainers addition for bioconductor-rcyjs |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcytoscape |
shpc-registry automated BioContainers addition for bioconductor-rcytoscape |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rdavidwebservice |
shpc-registry automated BioContainers addition for bioconductor-rdavidwebservice |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rdgidb |
shpc-registry automated BioContainers addition for bioconductor-rdgidb |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rdisop |
shpc-registry automated BioContainers addition for bioconductor-rdisop |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rdrtoolbox |
shpc-registry automated BioContainers addition for bioconductor-rdrtoolbox |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-reactome.db |
shpc-registry automated BioContainers addition for bioconductor-reactome.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-reactomecontentservice4r |
shpc-registry automated BioContainers addition for bioconductor-reactomecontentservice4r |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-reactomegraph4r |
shpc-registry automated BioContainers addition for bioconductor-reactomegraph4r |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-reactomegsa.data |
shpc-registry automated BioContainers addition for bioconductor-reactomegsa.data |
geosop, geos-config, glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-reactomegsa |
shpc-registry automated BioContainers addition for bioconductor-reactomegsa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-reactomepa |
shpc-registry automated BioContainers addition for bioconductor-reactomepa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-readat |
shpc-registry automated BioContainers addition for bioconductor-readat |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-readqpcr |
shpc-registry automated BioContainers addition for bioconductor-readqpcr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-reb |
shpc-registry automated BioContainers addition for bioconductor-reb |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rebet |
shpc-registry automated BioContainers addition for bioconductor-rebet |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rebook |
shpc-registry automated BioContainers addition for bioconductor-rebook |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-receptloss |
shpc-registry automated BioContainers addition for bioconductor-receptloss |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-reconsi |
shpc-registry automated BioContainers addition for bioconductor-reconsi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-recount |
shpc-registry automated BioContainers addition for bioconductor-recount |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-recount3 |
shpc-registry automated BioContainers addition for bioconductor-recount3 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-recountmethylation |
shpc-registry automated BioContainers addition for bioconductor-recountmethylation |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-recoup |
shpc-registry automated BioContainers addition for bioconductor-recoup |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-reder |
shpc-registry automated BioContainers addition for bioconductor-reder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-redisparam |
singularity registry hpc automated addition for bioconductor-redisparam |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-redseq |
shpc-registry automated BioContainers addition for bioconductor-redseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-refnet |
shpc-registry automated BioContainers addition for bioconductor-refnet |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-refplus |
shpc-registry automated BioContainers addition for bioconductor-refplus |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-regenrich |
shpc-registry automated BioContainers addition for bioconductor-regenrich |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-regionalpcs |
singularity registry hpc automated addition for bioconductor-regionalpcs |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-regionalst |
singularity registry hpc automated addition for bioconductor-regionalst |
xgboost, pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-regioner |
shpc-registry automated BioContainers addition for bioconductor-regioner |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-regionereloaded |
singularity registry hpc automated addition for bioconductor-regionereloaded |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-regionreport |
shpc-registry automated BioContainers addition for bioconductor-regionreport |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-regparallel |
shpc-registry automated BioContainers addition for bioconductor-regparallel |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-regsplice |
shpc-registry automated BioContainers addition for bioconductor-regsplice |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-regutools |
shpc-registry automated BioContainers addition for bioconductor-regutools |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jaotc, jdeprscan, jhsdb, jimage, jlink, jmod |
|
GITHUB
|
quay.io/biocontainers/bioconductor-remp |
shpc-registry automated BioContainers addition for bioconductor-remp |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-repitools |
shpc-registry automated BioContainers addition for bioconductor-repitools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-reportingtools |
shpc-registry automated BioContainers addition for bioconductor-reportingtools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-repviz |
shpc-registry automated BioContainers addition for bioconductor-repviz |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-reqon |
shpc-registry automated BioContainers addition for bioconductor-reqon |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-residualmatrix |
shpc-registry automated BioContainers addition for bioconductor-residualmatrix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-resolve |
singularity registry hpc automated addition for bioconductor-resolve |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-restfulse |
shpc-registry automated BioContainers addition for bioconductor-restfulse |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-restfulsedata |
shpc-registry automated BioContainers addition for bioconductor-restfulsedata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-retrofit |
singularity registry hpc automated addition for bioconductor-retrofit |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-reusedata |
singularity registry hpc automated addition for bioconductor-reusedata |
corepack, git2, npx, node, npm, hb-info, tjbench, glpsol, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rexposome |
shpc-registry automated BioContainers addition for bioconductor-rexposome |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rfarm |
shpc-registry automated BioContainers addition for bioconductor-rfarm |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rfastp |
shpc-registry automated BioContainers addition for bioconductor-rfastp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rforproteomics |
shpc-registry automated BioContainers addition for bioconductor-rforproteomics |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rfpred |
shpc-registry automated BioContainers addition for bioconductor-rfpred |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgadem |
shpc-registry automated BioContainers addition for bioconductor-rgadem |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgalaxy |
shpc-registry automated BioContainers addition for bioconductor-rgalaxy |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgenometracks |
shpc-registry automated BioContainers addition for bioconductor-rgenometracks |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgenometracksdata |
shpc-registry automated BioContainers addition for bioconductor-rgenometracksdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgin |
shpc-registry automated BioContainers addition for bioconductor-rgin |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgmql |
shpc-registry automated BioContainers addition for bioconductor-rgmql |
extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgmqllib |
shpc-registry automated BioContainers addition for bioconductor-rgmqllib |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgntx |
singularity registry hpc automated addition for bioconductor-rgntx |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgoslin |
singularity registry hpc automated addition for bioconductor-rgoslin |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgraph2js |
shpc-registry automated BioContainers addition for bioconductor-rgraph2js |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgraphviz |
shpc-registry automated BioContainers addition for bioconductor-rgraphviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgreat |
shpc-registry automated BioContainers addition for bioconductor-rgreat |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgsea |
shpc-registry automated BioContainers addition for bioconductor-rgsea |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgsepd |
shpc-registry automated BioContainers addition for bioconductor-rgsepd |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgu34a.db |
shpc-registry automated BioContainers addition for bioconductor-rgu34a.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgu34acdf |
shpc-registry automated BioContainers addition for bioconductor-rgu34acdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgu34aprobe |
shpc-registry automated BioContainers addition for bioconductor-rgu34aprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgu34b.db |
shpc-registry automated BioContainers addition for bioconductor-rgu34b.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgu34bcdf |
shpc-registry automated BioContainers addition for bioconductor-rgu34bcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgu34bprobe |
shpc-registry automated BioContainers addition for bioconductor-rgu34bprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgu34c.db |
shpc-registry automated BioContainers addition for bioconductor-rgu34c.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgu34ccdf |
shpc-registry automated BioContainers addition for bioconductor-rgu34ccdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgu34cprobe |
shpc-registry automated BioContainers addition for bioconductor-rgu34cprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rguatlas4k.db |
shpc-registry automated BioContainers addition for bioconductor-rguatlas4k.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgug4105a.db |
shpc-registry automated BioContainers addition for bioconductor-rgug4105a.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgug4130a.db |
shpc-registry automated BioContainers addition for bioconductor-rgug4130a.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgug4131a.db |
shpc-registry automated BioContainers addition for bioconductor-rgug4131a.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rhdf5 |
shpc-registry automated BioContainers addition for bioconductor-rhdf5 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rhdf5client |
shpc-registry automated BioContainers addition for bioconductor-rhdf5client |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rhdf5filters |
shpc-registry automated BioContainers addition for bioconductor-rhdf5filters |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rhdf5lib |
shpc-registry automated BioContainers addition for bioconductor-rhdf5lib |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rhesus.db0 |
shpc-registry automated BioContainers addition for bioconductor-rhesus.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rhesuscdf |
shpc-registry automated BioContainers addition for bioconductor-rhesuscdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rhesusprobe |
shpc-registry automated BioContainers addition for bioconductor-rhesusprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rheumaticconditionwollbold |
shpc-registry automated BioContainers addition for bioconductor-rheumaticconditionwollbold |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rhinotyper |
singularity registry hpc automated addition for bioconductor-rhinotyper |
x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rhisat2 |
shpc-registry automated BioContainers addition for bioconductor-rhisat2 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rhtslib |
shpc-registry automated BioContainers addition for bioconductor-rhtslib |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rhvdm |
shpc-registry automated BioContainers addition for bioconductor-rhvdm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ri16cod.db |
shpc-registry automated BioContainers addition for bioconductor-ri16cod.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ribocrypt |
shpc-registry automated BioContainers addition for bioconductor-ribocrypt |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ribodipa |
shpc-registry automated BioContainers addition for bioconductor-ribodipa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-riboprofiling |
shpc-registry automated BioContainers addition for bioconductor-riboprofiling |
my_print_defaults, mysql_config, perror, wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ribor |
shpc-registry automated BioContainers addition for bioconductor-ribor |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-riboseqr |
shpc-registry automated BioContainers addition for bioconductor-riboseqr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ribosomaldatabaseproject11.5mgdb |
shpc-registry automated BioContainers addition for bioconductor-ribosomaldatabaseproject11.5mgdb |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ribosomeprofilingqc |
shpc-registry automated BioContainers addition for bioconductor-ribosomeprofilingqc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ricecdf |
shpc-registry automated BioContainers addition for bioconductor-ricecdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-riceprobe |
shpc-registry automated BioContainers addition for bioconductor-riceprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rifi |
singularity registry hpc automated addition for bioconductor-rifi |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rificomparative |
singularity registry hpc automated addition for bioconductor-rificomparative |
git2, hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rimmport |
shpc-registry automated BioContainers addition for bioconductor-rimmport |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ringo |
shpc-registry automated BioContainers addition for bioconductor-ringo |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ripat |
shpc-registry automated BioContainers addition for bioconductor-ripat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ripseeker |
shpc-registry automated BioContainers addition for bioconductor-ripseeker |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ripseekerdata |
shpc-registry automated BioContainers addition for bioconductor-ripseekerdata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-risa |
shpc-registry automated BioContainers addition for bioconductor-risa |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ritan |
shpc-registry automated BioContainers addition for bioconductor-ritan |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ritandata |
shpc-registry automated BioContainers addition for bioconductor-ritandata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-river |
shpc-registry automated BioContainers addition for bioconductor-river |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rjmcmcnucleosomes |
shpc-registry automated BioContainers addition for bioconductor-rjmcmcnucleosomes |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rlassocox |
shpc-registry automated BioContainers addition for bioconductor-rlassocox |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rlhub |
shpc-registry automated BioContainers addition for bioconductor-rlhub |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rlmm |
shpc-registry automated BioContainers addition for bioconductor-rlmm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rlseq |
shpc-registry automated BioContainers addition for bioconductor-rlseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rmagpie |
shpc-registry automated BioContainers addition for bioconductor-rmagpie |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rmassbank |
shpc-registry automated BioContainers addition for bioconductor-rmassbank |
obfitall, obmm, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rmassbankdata |
shpc-registry automated BioContainers addition for bioconductor-rmassbankdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rmat |
shpc-registry automated BioContainers addition for bioconductor-rmat |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rmelting |
shpc-registry automated BioContainers addition for bioconductor-rmelting |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rmir.hs.mirna |
shpc-registry automated BioContainers addition for bioconductor-rmir.hs.mirna |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rmir.hsa |
shpc-registry automated BioContainers addition for bioconductor-rmir.hsa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rmir |
shpc-registry automated BioContainers addition for bioconductor-rmir |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rmmquant |
shpc-registry automated BioContainers addition for bioconductor-rmmquant |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rmspc |
shpc-registry automated BioContainers addition for bioconductor-rmspc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaagecalc |
shpc-registry automated BioContainers addition for bioconductor-rnaagecalc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnadecay |
shpc-registry automated BioContainers addition for bioconductor-rnadecay |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaeditr |
shpc-registry automated BioContainers addition for bioconductor-rnaeditr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnagilentdesign028282.db |
shpc-registry automated BioContainers addition for bioconductor-rnagilentdesign028282.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnainteract |
shpc-registry automated BioContainers addition for bioconductor-rnainteract |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnainteractmapk |
shpc-registry automated BioContainers addition for bioconductor-rnainteractmapk |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaither |
shpc-registry automated BioContainers addition for bioconductor-rnaither |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnamodr.alkanilineseq |
shpc-registry automated BioContainers addition for bioconductor-rnamodr.alkanilineseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnamodr.data |
shpc-registry automated BioContainers addition for bioconductor-rnamodr.data |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnamodr |
shpc-registry automated BioContainers addition for bioconductor-rnamodr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnamodr.ml |
shpc-registry automated BioContainers addition for bioconductor-rnamodr.ml |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnamodr.ribomethseq |
shpc-registry automated BioContainers addition for bioconductor-rnamodr.ribomethseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaprobr |
shpc-registry automated BioContainers addition for bioconductor-rnaprobr |
my_print_defaults, mysql_config, perror, wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnasense |
shpc-registry automated BioContainers addition for bioconductor-rnasense |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaseqcomp |
shpc-registry automated BioContainers addition for bioconductor-rnaseqcomp |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaseqcovarimpute |
singularity registry hpc automated addition for bioconductor-rnaseqcovarimpute |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaseqdata.hnrnpc.bam.chr14 |
shpc-registry automated BioContainers addition for bioconductor-rnaseqdata.hnrnpc.bam.chr14 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaseqmap |
shpc-registry automated BioContainers addition for bioconductor-rnaseqmap |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaseqpower |
shpc-registry automated BioContainers addition for bioconductor-rnaseqpower |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaseqr |
shpc-registry automated BioContainers addition for bioconductor-rnaseqr |
rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaseqrdata |
shpc-registry automated BioContainers addition for bioconductor-rnaseqrdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaseqsamplesize |
shpc-registry automated BioContainers addition for bioconductor-rnaseqsamplesize |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaseqsamplesizedata |
shpc-registry automated BioContainers addition for bioconductor-rnaseqsamplesizedata |
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GITHUB
|
quay.io/biocontainers/bioconductor-rnbeads.hg19 |
shpc-registry automated BioContainers addition for bioconductor-rnbeads.hg19 |
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GITHUB
|
quay.io/biocontainers/bioconductor-rnbeads.hg38 |
shpc-registry automated BioContainers addition for bioconductor-rnbeads.hg38 |
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GITHUB
|
quay.io/biocontainers/bioconductor-rnbeads |
shpc-registry automated BioContainers addition for bioconductor-rnbeads |
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GITHUB
|
quay.io/biocontainers/bioconductor-rnbeads.mm10 |
shpc-registry automated BioContainers addition for bioconductor-rnbeads.mm10 |
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GITHUB
|
quay.io/biocontainers/bioconductor-rnbeads.mm9 |
shpc-registry automated BioContainers addition for bioconductor-rnbeads.mm9 |
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GITHUB
|
quay.io/biocontainers/bioconductor-rnbeads.rn5 |
shpc-registry automated BioContainers addition for bioconductor-rnbeads.rn5 |
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GITHUB
|
quay.io/biocontainers/bioconductor-rnits |
shpc-registry automated BioContainers addition for bioconductor-rnits |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rnu34.db |
shpc-registry automated BioContainers addition for bioconductor-rnu34.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnu34cdf |
shpc-registry automated BioContainers addition for bioconductor-rnu34cdf |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rnu34probe |
shpc-registry automated BioContainers addition for bioconductor-rnu34probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-roar |
shpc-registry automated BioContainers addition for bioconductor-roar |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-roastgsa |
singularity registry hpc automated addition for bioconductor-roastgsa |
pcre2posix_test, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-roberts2005annotation.db |
shpc-registry automated BioContainers addition for bioconductor-roberts2005annotation.db |
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GITHUB
|
quay.io/biocontainers/bioconductor-roc |
shpc-registry automated BioContainers addition for bioconductor-roc |
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GITHUB
|
quay.io/biocontainers/bioconductor-rocpai |
shpc-registry automated BioContainers addition for bioconductor-rocpai |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rolde |
singularity registry hpc automated addition for bioconductor-rolde |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-roleswitch |
shpc-registry automated BioContainers addition for bioconductor-roleswitch |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rols |
shpc-registry automated BioContainers addition for bioconductor-rols |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rontotools |
shpc-registry automated BioContainers addition for bioconductor-rontotools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ropls |
shpc-registry automated BioContainers addition for bioconductor-ropls |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-roseq |
shpc-registry automated BioContainers addition for bioconductor-roseq |
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GITHUB
|
quay.io/biocontainers/bioconductor-rots |
shpc-registry automated BioContainers addition for bioconductor-rots |
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GITHUB
|
quay.io/biocontainers/bioconductor-rpa |
shpc-registry automated BioContainers addition for bioconductor-rpa |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rprimer |
singularity registry hpc automated addition for bioconductor-rprimer |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rprotobuflib |
shpc-registry automated BioContainers addition for bioconductor-rprotobuflib |
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GITHUB
|
quay.io/biocontainers/bioconductor-rpsixml |
shpc-registry automated BioContainers addition for bioconductor-rpsixml |
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GITHUB
|
quay.io/biocontainers/bioconductor-rpx |
shpc-registry automated BioContainers addition for bioconductor-rpx |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rqc |
shpc-registry automated BioContainers addition for bioconductor-rqc |
pandoc-server, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rqt |
shpc-registry automated BioContainers addition for bioconductor-rqt |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rqubic |
shpc-registry automated BioContainers addition for bioconductor-rqubic |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rrbsdata |
shpc-registry automated BioContainers addition for bioconductor-rrbsdata |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rrdp |
shpc-registry automated BioContainers addition for bioconductor-rrdp |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rrdpdata |
shpc-registry automated BioContainers addition for bioconductor-rrdpdata |
jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs, pack200 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rrho |
shpc-registry automated BioContainers addition for bioconductor-rrho |
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GITHUB
|
quay.io/biocontainers/bioconductor-rrvgo |
shpc-registry automated BioContainers addition for bioconductor-rrvgo |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rsamtools |
shpc-registry automated BioContainers addition for bioconductor-rsamtools |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rsbml |
shpc-registry automated BioContainers addition for bioconductor-rsbml |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rscudo |
shpc-registry automated BioContainers addition for bioconductor-rscudo |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rsemmed |
shpc-registry automated BioContainers addition for bioconductor-rsemmed |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rseqan |
shpc-registry automated BioContainers addition for bioconductor-rseqan |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rsffreader |
shpc-registry automated BioContainers addition for bioconductor-rsffreader |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rsubread |
shpc-registry automated BioContainers addition for bioconductor-rsubread |
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GITHUB
|
quay.io/biocontainers/bioconductor-rsvsim |
shpc-registry automated BioContainers addition for bioconductor-rsvsim |
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GITHUB
|
quay.io/biocontainers/bioconductor-rsweep |
shpc-registry automated BioContainers addition for bioconductor-rsweep |
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GITHUB
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quay.io/biocontainers/bioconductor-rta10probeset.db |
shpc-registry automated BioContainers addition for bioconductor-rta10probeset.db |
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GITHUB
|
quay.io/biocontainers/bioconductor-rta10transcriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-rta10transcriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtandem |
shpc-registry automated BioContainers addition for bioconductor-rtandem |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtca |
shpc-registry automated BioContainers addition for bioconductor-rtca |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtcga.clinical |
shpc-registry automated BioContainers addition for bioconductor-rtcga.clinical |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtcga.cnv |
shpc-registry automated BioContainers addition for bioconductor-rtcga.cnv |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtcga |
shpc-registry automated BioContainers addition for bioconductor-rtcga |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtcga.methylation |
shpc-registry automated BioContainers addition for bioconductor-rtcga.methylation |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtcga.mirnaseq |
shpc-registry automated BioContainers addition for bioconductor-rtcga.mirnaseq |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtcga.mrna |
shpc-registry automated BioContainers addition for bioconductor-rtcga.mrna |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtcga.mutations |
shpc-registry automated BioContainers addition for bioconductor-rtcga.mutations |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtcga.pancan12 |
shpc-registry automated BioContainers addition for bioconductor-rtcga.pancan12 |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtcga.rnaseq |
shpc-registry automated BioContainers addition for bioconductor-rtcga.rnaseq |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtcga.rppa |
shpc-registry automated BioContainers addition for bioconductor-rtcga.rppa |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtcgatoolbox |
shpc-registry automated BioContainers addition for bioconductor-rtcgatoolbox |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtn |
shpc-registry automated BioContainers addition for bioconductor-rtn |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtnduals |
shpc-registry automated BioContainers addition for bioconductor-rtnduals |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtnsurvival |
shpc-registry automated BioContainers addition for bioconductor-rtnsurvival |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtopper |
shpc-registry automated BioContainers addition for bioconductor-rtopper |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rtpca |
shpc-registry automated BioContainers addition for bioconductor-rtpca |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtracklayer |
shpc-registry automated BioContainers addition for bioconductor-rtracklayer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtreemix |
shpc-registry automated BioContainers addition for bioconductor-rtreemix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtrm |
shpc-registry automated BioContainers addition for bioconductor-rtrm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtrmui |
shpc-registry automated BioContainers addition for bioconductor-rtrmui |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtu34.db |
shpc-registry automated BioContainers addition for bioconductor-rtu34.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtu34cdf |
shpc-registry automated BioContainers addition for bioconductor-rtu34cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtu34probe |
shpc-registry automated BioContainers addition for bioconductor-rtu34probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-runibic |
shpc-registry automated BioContainers addition for bioconductor-runibic |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ruvcorr |
shpc-registry automated BioContainers addition for bioconductor-ruvcorr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ruvnormalize |
shpc-registry automated BioContainers addition for bioconductor-ruvnormalize |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ruvnormalizedata |
shpc-registry automated BioContainers addition for bioconductor-ruvnormalizedata |
x86_64-conda-linux-gnu-gfortran.bin, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ruvseq |
shpc-registry automated BioContainers addition for bioconductor-ruvseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rvisdiff |
singularity registry hpc automated addition for bioconductor-rvisdiff |
pcre2posix_test, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rvs |
shpc-registry automated BioContainers addition for bioconductor-rvs |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rwgcod.db |
shpc-registry automated BioContainers addition for bioconductor-rwgcod.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rwikipathways |
shpc-registry automated BioContainers addition for bioconductor-rwikipathways |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-s4arrays |
singularity registry hpc automated addition for bioconductor-s4arrays |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-s4vectors |
shpc-registry automated BioContainers addition for bioconductor-s4vectors |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-safe |
shpc-registry automated BioContainers addition for bioconductor-safe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sagenhaft |
shpc-registry automated BioContainers addition for bioconductor-sagenhaft |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sagx |
shpc-registry automated BioContainers addition for bioconductor-sagx |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-saigegds |
shpc-registry automated BioContainers addition for bioconductor-saigegds |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-samexplorer |
shpc-registry automated BioContainers addition for bioconductor-samexplorer |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sampleclassifier |
shpc-registry automated BioContainers addition for bioconductor-sampleclassifier |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sampleclassifierdata |
shpc-registry automated BioContainers addition for bioconductor-sampleclassifierdata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-samspectral |
shpc-registry automated BioContainers addition for bioconductor-samspectral |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sangeranalyser |
shpc-registry automated BioContainers addition for bioconductor-sangeranalyser |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sangerseqr |
shpc-registry automated BioContainers addition for bioconductor-sangerseqr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-santa |
shpc-registry automated BioContainers addition for bioconductor-santa |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sapfinder |
shpc-registry automated BioContainers addition for bioconductor-sapfinder |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sarc |
singularity registry hpc automated addition for bioconductor-sarc |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sarks |
shpc-registry automated BioContainers addition for bioconductor-sarks |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-saturn |
shpc-registry automated BioContainers addition for bioconductor-saturn |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-saureuscdf |
shpc-registry automated BioContainers addition for bioconductor-saureuscdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-saureusprobe |
shpc-registry automated BioContainers addition for bioconductor-saureusprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-savr |
shpc-registry automated BioContainers addition for bioconductor-savr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sbgnview.data |
shpc-registry automated BioContainers addition for bioconductor-sbgnview.data |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sbgnview |
shpc-registry automated BioContainers addition for bioconductor-sbgnview |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sbmlr |
shpc-registry automated BioContainers addition for bioconductor-sbmlr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sc3-scripts |
shpc-registry automated BioContainers addition for bioconductor-sc3-scripts |
bioconductor-sc3-scripts-post-install-tests.bats, bioconductor-sc3-scripts-post-install-tests.sh, bioconductor-scater-scripts-post-install-tests.bats, bioconductor-scater-scripts-post-install-tests.sh, bioconductor-singlecellexperiment-scripts-post-install-tests.sh, sc3-sc3-calc-biology.R, sc3-sc3-calc-consens.R, sc3-sc3-calc-dists.R, sc3-sc3-calc-transfs.R, sc3-sc3-estimate-k.R, sc3-sc3-kmeans.R, sc3-sc3-prepare.R, scater-calculate-cpm.R, scater-calculate-qc-metrics.R, scater-extract-qc-metric.R, scater-filter.R, scater-is-outlier.R, scater-normalize.R, scater-plot-reduced-dim.R, scater-run-pca.R, scater-run-tsne.R, singlecellexperiment-create-single-cell-experiment.R, singlecellexperiment-get-random-cells.R, singlecellexperiment-get-random-genes.R, conda_build.sh, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sc3 |
shpc-registry automated BioContainers addition for bioconductor-sc3 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scale4c |
shpc-registry automated BioContainers addition for bioconductor-scale4c |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scaledmatrix |
shpc-registry automated BioContainers addition for bioconductor-scaledmatrix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scalign |
shpc-registry automated BioContainers addition for bioconductor-scalign |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scan.upc |
shpc-registry automated BioContainers addition for bioconductor-scan.upc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scanmir |
shpc-registry automated BioContainers addition for bioconductor-scanmir |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-scanmirapp |
shpc-registry automated BioContainers addition for bioconductor-scanmirapp |
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GITHUB
|
quay.io/biocontainers/bioconductor-scanmirdata |
shpc-registry automated BioContainers addition for bioconductor-scanmirdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scannotatr |
shpc-registry automated BioContainers addition for bioconductor-scannotatr |
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GITHUB
|
quay.io/biocontainers/bioconductor-scannotatr.models |
shpc-registry automated BioContainers addition for bioconductor-scannotatr.models |
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GITHUB
|
quay.io/biocontainers/bioconductor-scanvis |
shpc-registry automated BioContainers addition for bioconductor-scanvis |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-scarray |
shpc-registry automated BioContainers addition for bioconductor-scarray |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scarray.sat |
singularity registry hpc automated addition for bioconductor-scarray.sat |
geosop, geos-config, hb-info, tjbench, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scatac.explorer |
shpc-registry automated BioContainers addition for bioconductor-scatac.explorer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scate |
shpc-registry automated BioContainers addition for bioconductor-scate |
xgboost |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scatedata |
shpc-registry automated BioContainers addition for bioconductor-scatedata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scater-scripts |
shpc-registry automated BioContainers addition for bioconductor-scater-scripts |
bioconductor-scater-scripts-post-install-tests.bats, bioconductor-scater-scripts-post-install-tests.sh, bioconductor-singlecellexperiment-scripts-post-install-tests.sh, scater-calculate-cpm.R, scater-calculate-qc-metrics.R, scater-extract-qc-metric.R, scater-filter.R, scater-is-outlier.R, scater-normalize.R, scater-plot-reduced-dim.R, scater-run-pca.R, scater-run-tsne.R, singlecellexperiment-create-single-cell-experiment.R, singlecellexperiment-get-random-cells.R, singlecellexperiment-get-random-genes.R, conda_build.sh, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scater |
shpc-registry automated BioContainers addition for bioconductor-scater |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scatterhatch |
shpc-registry automated BioContainers addition for bioconductor-scatterhatch |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scbfa |
shpc-registry automated BioContainers addition for bioconductor-scbfa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scbn |
shpc-registry automated BioContainers addition for bioconductor-scbn |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scbubbletree |
singularity registry hpc automated addition for bioconductor-scbubbletree |
geosop, geos-config, glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sccb2 |
shpc-registry automated BioContainers addition for bioconductor-sccb2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scclassifr |
shpc-registry automated BioContainers addition for bioconductor-scclassifr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scclassify |
shpc-registry automated BioContainers addition for bioconductor-scclassify |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sccomp |
singularity registry hpc automated addition for bioconductor-sccomp |
geosop, geos-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/bioconductor-scdataviz |
shpc-registry automated BioContainers addition for bioconductor-scdataviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scdblfinder |
shpc-registry automated BioContainers addition for bioconductor-scdblfinder |
xgboost |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scdd |
shpc-registry automated BioContainers addition for bioconductor-scdd |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scddboost |
singularity registry hpc automated addition for bioconductor-scddboost |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scde |
shpc-registry automated BioContainers addition for bioconductor-scde |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scdesign3 |
singularity registry hpc automated addition for bioconductor-scdesign3 |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scdotplot |
singularity registry hpc automated addition for bioconductor-scdotplot |
pandoc-lua, x86_64-conda-linux-gnu.cfg, pandoc-server, idle3.13, pydoc3.13, python3.13, python3.13-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scds |
shpc-registry automated BioContainers addition for bioconductor-scds |
xgboost, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scfa |
shpc-registry automated BioContainers addition for bioconductor-scfa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scfeaturefilter |
shpc-registry automated BioContainers addition for bioconductor-scfeaturefilter |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scfeatures |
singularity registry hpc automated addition for bioconductor-scfeatures |
geosop, x86_64-conda-linux-gnu-pkg-config, geos-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, hb-info, dvipdf, eps2eps, gs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scfind |
shpc-registry automated BioContainers addition for bioconductor-scfind |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scgps |
shpc-registry automated BioContainers addition for bioconductor-scgps |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-schex |
shpc-registry automated BioContainers addition for bioconductor-schex |
testepsg, gdal_create, pdfsig, pg_standby, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach |
|
GITHUB
|
quay.io/biocontainers/bioconductor-schot |
shpc-registry automated BioContainers addition for bioconductor-schot |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scider |
singularity registry hpc automated addition for bioconductor-scider |
bsdunzip, gdal_footprint, minigzip, minizip, protoc-24.4.0, sozip, h5fuse.sh, pg_amcheck, pcre2posix_test, gdal_create, pdfsig, bsdcat, bsdcpio, bsdtar, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pdfattach, pg_verifybackup, projsync, gdal-config, gdal_contour, gdal_grid, gdal_rasterize |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scifer |
singularity registry hpc automated addition for bioconductor-scifer |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, pandoc, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scisi |
shpc-registry automated BioContainers addition for bioconductor-scisi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sclcbam |
shpc-registry automated BioContainers addition for bioconductor-sclcbam |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scmageck |
shpc-registry automated BioContainers addition for bioconductor-scmageck |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scmap |
shpc-registry automated BioContainers addition for bioconductor-scmap |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scmerge |
shpc-registry automated BioContainers addition for bioconductor-scmerge |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scmeth |
shpc-registry automated BioContainers addition for bioconductor-scmeth |
pandoc-citeproc, pandoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scmitomut |
singularity registry hpc automated addition for bioconductor-scmitomut |
x86_64-conda-linux-gnu.cfg, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scmultiome |
singularity registry hpc automated addition for bioconductor-scmultiome |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scmultisim |
singularity registry hpc automated addition for bioconductor-scmultisim |
x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scnorm |
shpc-registry automated BioContainers addition for bioconductor-scnorm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scone |
shpc-registry automated BioContainers addition for bioconductor-scone |
f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, gio-launch-desktop |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sconify |
shpc-registry automated BioContainers addition for bioconductor-sconify |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scope |
shpc-registry automated BioContainers addition for bioconductor-scope |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scoreinvhap |
shpc-registry automated BioContainers addition for bioconductor-scoreinvhap |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scoup |
singularity registry hpc automated addition for bioconductor-scoup |
x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scp |
shpc-registry automated BioContainers addition for bioconductor-scp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scpca |
shpc-registry automated BioContainers addition for bioconductor-scpca |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scpdata |
shpc-registry automated BioContainers addition for bioconductor-scpdata |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scpipe |
shpc-registry automated BioContainers addition for bioconductor-scpipe |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scran |
shpc-registry automated BioContainers addition for bioconductor-scran |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-screclassify |
shpc-registry automated BioContainers addition for bioconductor-screclassify |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-screcover |
shpc-registry automated BioContainers addition for bioconductor-screcover |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-screencounter |
singularity registry hpc automated addition for bioconductor-screencounter |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-screenr |
singularity registry hpc automated addition for bioconductor-screenr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-screpertoire |
shpc-registry automated BioContainers addition for bioconductor-screpertoire |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scrnaseq |
shpc-registry automated BioContainers addition for bioconductor-scrnaseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scrnaseqapp |
singularity registry hpc automated addition for bioconductor-scrnaseqapp |
h5delete, geosop, aec, geos-config, hb-info, tjbench, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, h5clear, h5format_convert, h5watch |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scruff |
shpc-registry automated BioContainers addition for bioconductor-scruff |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scry |
shpc-registry automated BioContainers addition for bioconductor-scry |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scshapes |
shpc-registry automated BioContainers addition for bioconductor-scshapes |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scsr |
shpc-registry automated BioContainers addition for bioconductor-scsr |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sctensor |
shpc-registry automated BioContainers addition for bioconductor-sctensor |
testepsg, gdal_create, pdfsig, pg_standby, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sctgif |
shpc-registry automated BioContainers addition for bioconductor-sctgif |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach, applygeo |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scthi.data |
shpc-registry automated BioContainers addition for bioconductor-scthi.data |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scthi |
shpc-registry automated BioContainers addition for bioconductor-scthi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sctreeviz |
shpc-registry automated BioContainers addition for bioconductor-sctreeviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scuttle |
shpc-registry automated BioContainers addition for bioconductor-scuttle |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scvir |
singularity registry hpc automated addition for bioconductor-scvir |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sdams |
shpc-registry automated BioContainers addition for bioconductor-sdams |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seahtrue |
singularity registry hpc automated addition for bioconductor-seahtrue |
x86_64-conda-linux-gnu.cfg, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sechm |
shpc-registry automated BioContainers addition for bioconductor-sechm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-segmenter |
shpc-registry automated BioContainers addition for bioconductor-segmenter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-segmentseq |
shpc-registry automated BioContainers addition for bioconductor-segmentseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-selectksigs |
shpc-registry automated BioContainers addition for bioconductor-selectksigs |
jags |
|
GITHUB
|
quay.io/biocontainers/bioconductor-selex |
shpc-registry automated BioContainers addition for bioconductor-selex |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-semdist |
shpc-registry automated BioContainers addition for bioconductor-semdist |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-semisup |
shpc-registry automated BioContainers addition for bioconductor-semisup |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sepa |
shpc-registry automated BioContainers addition for bioconductor-sepa |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sepira |
shpc-registry automated BioContainers addition for bioconductor-sepira |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seq.hotspot |
singularity registry hpc automated addition for bioconductor-seq.hotspot |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seq2pathway.data |
shpc-registry automated BioContainers addition for bioconductor-seq2pathway.data |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-seq2pathway |
shpc-registry automated BioContainers addition for bioconductor-seq2pathway |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqarchr |
singularity registry hpc automated addition for bioconductor-seqarchr |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqarchrplus |
singularity registry hpc automated addition for bioconductor-seqarchrplus |
f2py3.11, hb-info, tjbench, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqarray |
shpc-registry automated BioContainers addition for bioconductor-seqarray |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqbias |
shpc-registry automated BioContainers addition for bioconductor-seqbias |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqc |
shpc-registry automated BioContainers addition for bioconductor-seqc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqcat |
shpc-registry automated BioContainers addition for bioconductor-seqcat |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqcna.annot |
shpc-registry automated BioContainers addition for bioconductor-seqcna.annot |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqcna |
shpc-registry automated BioContainers addition for bioconductor-seqcna |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqcombo |
shpc-registry automated BioContainers addition for bioconductor-seqcombo |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqgate |
shpc-registry automated BioContainers addition for bioconductor-seqgate |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqgsea |
shpc-registry automated BioContainers addition for bioconductor-seqgsea |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqlogo |
shpc-registry automated BioContainers addition for bioconductor-seqlogo |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqpattern |
shpc-registry automated BioContainers addition for bioconductor-seqpattern |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqplots |
shpc-registry automated BioContainers addition for bioconductor-seqplots |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqsetvis |
shpc-registry automated BioContainers addition for bioconductor-seqsetvis |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqsqc |
shpc-registry automated BioContainers addition for bioconductor-seqsqc |
pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqtools |
shpc-registry automated BioContainers addition for bioconductor-seqtools |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-seqvartools |
shpc-registry automated BioContainers addition for bioconductor-seqvartools |
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GITHUB
|
quay.io/biocontainers/bioconductor-serumstimulation |
shpc-registry automated BioContainers addition for bioconductor-serumstimulation |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sesame |
shpc-registry automated BioContainers addition for bioconductor-sesame |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sesamedata |
shpc-registry automated BioContainers addition for bioconductor-sesamedata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-setools |
shpc-registry automated BioContainers addition for bioconductor-setools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sevenbridges |
shpc-registry automated BioContainers addition for bioconductor-sevenbridges |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sevenc |
shpc-registry automated BioContainers addition for bioconductor-sevenc |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seventygenedata |
shpc-registry automated BioContainers addition for bioconductor-seventygenedata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sfedata |
singularity registry hpc automated addition for bioconductor-sfedata |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sgcp |
singularity registry hpc automated addition for bioconductor-sgcp |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sgseq |
shpc-registry automated BioContainers addition for bioconductor-sgseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sharedobject |
shpc-registry automated BioContainers addition for bioconductor-sharedobject |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-shdz.db |
shpc-registry automated BioContainers addition for bioconductor-shdz.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-shinyepico |
shpc-registry automated BioContainers addition for bioconductor-shinyepico |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-shinymethyl |
shpc-registry automated BioContainers addition for bioconductor-shinymethyl |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-shinymethyldata |
shpc-registry automated BioContainers addition for bioconductor-shinymethyldata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-shinytandem |
shpc-registry automated BioContainers addition for bioconductor-shinytandem |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-shortread |
shpc-registry automated BioContainers addition for bioconductor-shortread |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-siamcat |
shpc-registry automated BioContainers addition for bioconductor-siamcat |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sictools |
shpc-registry automated BioContainers addition for bioconductor-sictools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sift.hsapiens.dbsnp132 |
shpc-registry automated BioContainers addition for bioconductor-sift.hsapiens.dbsnp132 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sift.hsapiens.dbsnp137 |
shpc-registry automated BioContainers addition for bioconductor-sift.hsapiens.dbsnp137 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sigar |
shpc-registry automated BioContainers addition for bioconductor-sigar |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sigcheck |
shpc-registry automated BioContainers addition for bioconductor-sigcheck |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sigfeature |
shpc-registry automated BioContainers addition for bioconductor-sigfeature |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sigfuge |
shpc-registry automated BioContainers addition for bioconductor-sigfuge |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-siggenes |
shpc-registry automated BioContainers addition for bioconductor-siggenes |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sights |
shpc-registry automated BioContainers addition for bioconductor-sights |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-signaturesearch |
shpc-registry automated BioContainers addition for bioconductor-signaturesearch |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-signaturesearchdata |
shpc-registry automated BioContainers addition for bioconductor-signaturesearchdata |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-signer |
shpc-registry automated BioContainers addition for bioconductor-signer |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-signet |
shpc-registry automated BioContainers addition for bioconductor-signet |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-signifinder |
singularity registry hpc automated addition for bioconductor-signifinder |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sigpathway |
shpc-registry automated BioContainers addition for bioconductor-sigpathway |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-sigspack |
shpc-registry automated BioContainers addition for bioconductor-sigspack |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-sigsquared |
shpc-registry automated BioContainers addition for bioconductor-sigsquared |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-silva128.1mgdb |
shpc-registry automated BioContainers addition for bioconductor-silva128.1mgdb |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sim |
shpc-registry automated BioContainers addition for bioconductor-sim |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-simat |
shpc-registry automated BioContainers addition for bioconductor-simat |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-simbenchdata |
shpc-registry automated BioContainers addition for bioconductor-simbenchdata |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-simbindprofiles |
shpc-registry automated BioContainers addition for bioconductor-simbindprofiles |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-simbu |
singularity registry hpc automated addition for bioconductor-simbu |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-simd |
shpc-registry automated BioContainers addition for bioconductor-simd |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-simffpe |
shpc-registry automated BioContainers addition for bioconductor-simffpe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-similarpeak |
shpc-registry automated BioContainers addition for bioconductor-similarpeak |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-simlr |
shpc-registry automated BioContainers addition for bioconductor-simlr |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv, c89 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-simona |
singularity registry hpc automated addition for bioconductor-simona |
pcre2posix_test, hb-info, glpsol, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-simpintlists |
shpc-registry automated BioContainers addition for bioconductor-simpintlists |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-simpleaffy |
shpc-registry automated BioContainers addition for bioconductor-simpleaffy |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-simpleseg |
singularity registry hpc automated addition for bioconductor-simpleseg |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, dap-config, dap-config-pkgconfig, gdal-config, gdal_contour, gdal_grid, gdal_rasterize, gdal_translate, gdaladdo |
|
GITHUB
|
quay.io/biocontainers/bioconductor-simplifyenrichment |
shpc-registry automated BioContainers addition for bioconductor-simplifyenrichment |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-simulatorz |
shpc-registry automated BioContainers addition for bioconductor-simulatorz |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sincell |
shpc-registry automated BioContainers addition for bioconductor-sincell |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-single.mtec.transcriptomes |
shpc-registry automated BioContainers addition for bioconductor-single.mtec.transcriptomes |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-singlecellexperiment-scripts |
shpc-registry automated BioContainers addition for bioconductor-singlecellexperiment-scripts |
bioconductor-singlecellexperiment-scripts-post-install-tests.sh, singlecellexperiment-create-single-cell-experiment.R, singlecellexperiment-get-random-cells.R, singlecellexperiment-get-random-genes.R, build_env_setup.sh, conda_build.sh, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-singlecellexperiment |
shpc-registry automated BioContainers addition for bioconductor-singlecellexperiment |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-singlecellmultimodal |
shpc-registry automated BioContainers addition for bioconductor-singlecellmultimodal |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-singlecellsignalr |
shpc-registry automated BioContainers addition for bioconductor-singlecellsignalr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-singlecelltk |
shpc-registry automated BioContainers addition for bioconductor-singlecelltk |
xgboost, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display |
|
GITHUB
|
quay.io/biocontainers/bioconductor-singlemoleculefootprinting |
shpc-registry automated BioContainers addition for bioconductor-singlemoleculefootprinting |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-singlemoleculefootprintingdata |
shpc-registry automated BioContainers addition for bioconductor-singlemoleculefootprintingdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-singler |
shpc-registry automated BioContainers addition for bioconductor-singler |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-singscore |
shpc-registry automated BioContainers addition for bioconductor-singscore |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sipsic |
singularity registry hpc automated addition for bioconductor-sipsic |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sispa |
shpc-registry automated BioContainers addition for bioconductor-sispa |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sitadela |
shpc-registry automated BioContainers addition for bioconductor-sitadela |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sitepath |
shpc-registry automated BioContainers addition for bioconductor-sitepath |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sizepower |
shpc-registry automated BioContainers addition for bioconductor-sizepower |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sketchr |
singularity registry hpc automated addition for bioconductor-sketchr |
x86_64-conda-linux-gnu.cfg, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-skewr |
shpc-registry automated BioContainers addition for bioconductor-skewr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-slalom |
shpc-registry automated BioContainers addition for bioconductor-slalom |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-slgi |
shpc-registry automated BioContainers addition for bioconductor-slgi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-slingshot |
shpc-registry automated BioContainers addition for bioconductor-slingshot |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-slinky |
shpc-registry automated BioContainers addition for bioconductor-slinky |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-slqpcr |
shpc-registry automated BioContainers addition for bioconductor-slqpcr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-smad |
shpc-registry automated BioContainers addition for bioconductor-smad |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-smap |
shpc-registry automated BioContainers addition for bioconductor-smap |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-smite |
shpc-registry automated BioContainers addition for bioconductor-smite |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-smokingmouse |
singularity registry hpc automated addition for bioconductor-smokingmouse |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-snadata |
shpc-registry automated BioContainers addition for bioconductor-snadata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snagee |
shpc-registry automated BioContainers addition for bioconductor-snagee |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snageedata |
shpc-registry automated BioContainers addition for bioconductor-snageedata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snapcgh |
shpc-registry automated BioContainers addition for bioconductor-snapcgh |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snapcount |
shpc-registry automated BioContainers addition for bioconductor-snapcount |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snifter |
shpc-registry automated BioContainers addition for bioconductor-snifter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snm |
shpc-registry automated BioContainers addition for bioconductor-snm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snpchip |
shpc-registry automated BioContainers addition for bioconductor-snpchip |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-snpediar |
shpc-registry automated BioContainers addition for bioconductor-snpediar |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-snphood |
shpc-registry automated BioContainers addition for bioconductor-snphood |
my_print_defaults, mysql_config, perror, wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-snphooddata |
shpc-registry automated BioContainers addition for bioconductor-snphooddata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp.20101109 |
shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp.20101109 |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp.20120608 |
shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp.20120608 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp141.grch38 |
shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp141.grch38 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp142.grch37 |
shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp142.grch37 |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp144.grch37 |
shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp144.grch37 |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp144.grch38 |
shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp144.grch38 |
x86_64-conda-linux-gnu-gfortran.bin, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp149.grch38 |
shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp149.grch38 |
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GITHUB
|
quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp150.grch38 |
shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp150.grch38 |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp151.grch38 |
shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp151.grch38 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-snprelate |
shpc-registry automated BioContainers addition for bioconductor-snprelate |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snpstats |
shpc-registry automated BioContainers addition for bioconductor-snpstats |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-soggi |
shpc-registry automated BioContainers addition for bioconductor-soggi |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sojourner |
shpc-registry automated BioContainers addition for bioconductor-sojourner |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach, applygeo |
|
GITHUB
|
quay.io/biocontainers/bioconductor-somascan.db |
singularity registry hpc automated addition for bioconductor-somascan.db |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-somaticadata |
shpc-registry automated BioContainers addition for bioconductor-somaticadata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-somaticcanceralterations |
shpc-registry automated BioContainers addition for bioconductor-somaticcanceralterations |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-somaticsignatures |
shpc-registry automated BioContainers addition for bioconductor-somaticsignatures |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-somnibus |
shpc-registry automated BioContainers addition for bioconductor-somnibus |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-soybeancdf |
shpc-registry automated BioContainers addition for bioconductor-soybeancdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-soybeanprobe |
shpc-registry automated BioContainers addition for bioconductor-soybeanprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spacepac |
shpc-registry automated BioContainers addition for bioconductor-spacepac |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spaniel |
shpc-registry automated BioContainers addition for bioconductor-spaniel |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sparrow |
shpc-registry automated BioContainers addition for bioconductor-sparrow |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sparsearray |
singularity registry hpc automated addition for bioconductor-sparsearray |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sparsedossa |
shpc-registry automated BioContainers addition for bioconductor-sparsedossa |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sparsematrixstats |
shpc-registry automated BioContainers addition for bioconductor-sparsematrixstats |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sparsenetgls |
shpc-registry automated BioContainers addition for bioconductor-sparsenetgls |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sparsesignatures |
shpc-registry automated BioContainers addition for bioconductor-sparsesignatures |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spasim |
singularity registry hpc automated addition for bioconductor-spasim |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spatialcpie |
shpc-registry automated BioContainers addition for bioconductor-spatialcpie |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spatialdatasets |
singularity registry hpc automated addition for bioconductor-spatialdatasets |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, display, identify, import, magick, magick-script, mogrify, montage, convert, pkg-config, pkg-config.bin, stream, compare |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spatialde |
shpc-registry automated BioContainers addition for bioconductor-spatialde |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spatialdecon |
shpc-registry automated BioContainers addition for bioconductor-spatialdecon |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spatialdmelxsim |
shpc-registry automated BioContainers addition for bioconductor-spatialdmelxsim |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spatialexperiment |
shpc-registry automated BioContainers addition for bioconductor-spatialexperiment |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spatialfeatureexperiment |
singularity registry hpc automated addition for bioconductor-spatialfeatureexperiment |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, udunits2, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, dap-config, dap-config-pkgconfig, gdal-config, gdal_contour, gdal_grid, gdal_rasterize, gdal_translate |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spatialheatmap |
shpc-registry automated BioContainers addition for bioconductor-spatialheatmap |
aomdec, aomenc, ffmpeg, ffprobe, h264dec, h264enc, lame, vpxdec, vpxenc, x264, x265, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv, psktool |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spatiallibd |
shpc-registry automated BioContainers addition for bioconductor-spatiallibd |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spatialomicsoverlay |
singularity registry hpc automated addition for bioconductor-spatialomicsoverlay |
jwebserver, geosop, x86_64-conda-linux-gnu-pkg-config, geos-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, jpackage, hb-info, f2py3.11, dvipdf |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spatzie |
shpc-registry automated BioContainers addition for bioconductor-spatzie |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-speckle |
singularity registry hpc automated addition for bioconductor-speckle |
geosop, geos-config, hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-specl |
shpc-registry automated BioContainers addition for bioconductor-specl |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-specond |
shpc-registry automated BioContainers addition for bioconductor-specond |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spectra |
shpc-registry automated BioContainers addition for bioconductor-spectra |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spectraltad |
shpc-registry automated BioContainers addition for bioconductor-spectraltad |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spectraql |
singularity registry hpc automated addition for bioconductor-spectraql |
x86_64-conda-linux-gnu.cfg, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spem |
shpc-registry automated BioContainers addition for bioconductor-spem |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spia |
shpc-registry automated BioContainers addition for bioconductor-spia |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spiat |
singularity registry hpc automated addition for bioconductor-spiat |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, dap-config, dap-config-pkgconfig, gdal-config, gdal_contour, gdal_grid, gdal_rasterize, gdal_translate, gdaladdo |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spicyr |
shpc-registry automated BioContainers addition for bioconductor-spicyr |
testepsg, gdal_create, pdfsig, pg_standby, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spidermir |
shpc-registry automated BioContainers addition for bioconductor-spidermir |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spikein |
shpc-registry automated BioContainers addition for bioconductor-spikein |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spikeinsubset |
shpc-registry automated BioContainers addition for bioconductor-spikeinsubset |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spikeli |
shpc-registry automated BioContainers addition for bioconductor-spikeli |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spiky |
shpc-registry automated BioContainers addition for bioconductor-spiky |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spillr |
singularity registry hpc automated addition for bioconductor-spillr |
x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, numpy-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spktools |
shpc-registry automated BioContainers addition for bioconductor-spktools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-splatter |
shpc-registry automated BioContainers addition for bioconductor-splatter |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-splicegear |
shpc-registry automated BioContainers addition for bioconductor-splicegear |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-splicer |
shpc-registry automated BioContainers addition for bioconductor-splicer |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-splicesites |
shpc-registry automated BioContainers addition for bioconductor-splicesites |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-splicewiz |
singularity registry hpc automated addition for bioconductor-splicewiz |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-splicingfactory |
shpc-registry automated BioContainers addition for bioconductor-splicingfactory |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-splicinggraphs |
shpc-registry automated BioContainers addition for bioconductor-splicinggraphs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-splinetimer |
shpc-registry automated BioContainers addition for bioconductor-splinetimer |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-splinter |
shpc-registry automated BioContainers addition for bioconductor-splinter |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-splots |
shpc-registry automated BioContainers addition for bioconductor-splots |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sponge |
shpc-registry automated BioContainers addition for bioconductor-sponge |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spotclean |
singularity registry hpc automated addition for bioconductor-spotclean |
geosop, geos-config, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spotlight |
singularity registry hpc automated addition for bioconductor-spotlight |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spotsegmentation |
shpc-registry automated BioContainers addition for bioconductor-spotsegmentation |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spqn |
shpc-registry automated BioContainers addition for bioconductor-spqn |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spqndata |
shpc-registry automated BioContainers addition for bioconductor-spqndata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spsimseq |
shpc-registry automated BioContainers addition for bioconductor-spsimseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sqldataframe |
shpc-registry automated BioContainers addition for bioconductor-sqldataframe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-squadd |
shpc-registry automated BioContainers addition for bioconductor-squadd |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sracipe |
shpc-registry automated BioContainers addition for bioconductor-sracipe |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sradb |
shpc-registry automated BioContainers addition for bioconductor-sradb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-srap |
shpc-registry automated BioContainers addition for bioconductor-srap |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-srgnet |
shpc-registry automated BioContainers addition for bioconductor-srgnet |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-srnadiff |
shpc-registry automated BioContainers addition for bioconductor-srnadiff |
pandoc-citeproc, pandoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sscore |
shpc-registry automated BioContainers addition for bioconductor-sscore |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sscu |
shpc-registry automated BioContainers addition for bioconductor-sscu |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sseq |
shpc-registry automated BioContainers addition for bioconductor-sseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ssize |
shpc-registry automated BioContainers addition for bioconductor-ssize |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ssnappy |
singularity registry hpc automated addition for bioconductor-ssnappy |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sspa |
shpc-registry automated BioContainers addition for bioconductor-sspa |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sspaths |
shpc-registry automated BioContainers addition for bioconductor-sspaths |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ssrch |
shpc-registry automated BioContainers addition for bioconductor-ssrch |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ssviz |
shpc-registry automated BioContainers addition for bioconductor-ssviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-stabmap |
singularity registry hpc automated addition for bioconductor-stabmap |
x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-stager |
shpc-registry automated BioContainers addition for bioconductor-stager |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-stan |
shpc-registry automated BioContainers addition for bioconductor-stan |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-standr |
singularity registry hpc automated addition for bioconductor-standr |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-starank |
shpc-registry automated BioContainers addition for bioconductor-starank |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-starbiotrek |
shpc-registry automated BioContainers addition for bioconductor-starbiotrek |
idn2, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-starr |
shpc-registry automated BioContainers addition for bioconductor-starr |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-stategra |
shpc-registry automated BioContainers addition for bioconductor-stategra |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-statial |
singularity registry hpc automated addition for bioconductor-statial |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, udunits2, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, dap-config, dap-config-pkgconfig, gdal-config, gdal_contour, gdal_grid, gdal_rasterize, gdal_translate |
|
GITHUB
|
quay.io/biocontainers/bioconductor-stattarget |
shpc-registry automated BioContainers addition for bioconductor-stattarget |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-stdeconvolve |
singularity registry hpc automated addition for bioconductor-stdeconvolve |
jpackage, cups-config, ippeveprinter, ipptool, numba, pycc, tqdm, f2py3.10, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug |
|
GITHUB
|
quay.io/biocontainers/bioconductor-stemhypoxia |
shpc-registry automated BioContainers addition for bioconductor-stemhypoxia |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-stepnorm |
shpc-registry automated BioContainers addition for bioconductor-stepnorm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-stexampledata |
shpc-registry automated BioContainers addition for bioconductor-stexampledata |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-stjoincount |
singularity registry hpc automated addition for bioconductor-stjoincount |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, udunits2, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, dap-config, dap-config-pkgconfig, gdal-config, gdal_contour, gdal_grid, gdal_rasterize, gdal_translate |
|
GITHUB
|
quay.io/biocontainers/bioconductor-stjudem |
shpc-registry automated BioContainers addition for bioconductor-stjudem |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-strandcheckr |
shpc-registry automated BioContainers addition for bioconductor-strandcheckr |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-streamer |
shpc-registry automated BioContainers addition for bioconductor-streamer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-stringdb |
shpc-registry automated BioContainers addition for bioconductor-stringdb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-stroma4 |
shpc-registry automated BioContainers addition for bioconductor-stroma4 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-struct |
shpc-registry automated BioContainers addition for bioconductor-struct |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-structstrings |
shpc-registry automated BioContainers addition for bioconductor-structstrings |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-structtoolbox |
shpc-registry automated BioContainers addition for bioconductor-structtoolbox |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach, applygeo |
|
GITHUB
|
quay.io/biocontainers/bioconductor-structuralvariantannotation |
shpc-registry automated BioContainers addition for bioconductor-structuralvariantannotation |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-subcellbarcode |
shpc-registry automated BioContainers addition for bioconductor-subcellbarcode |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-subseq |
shpc-registry automated BioContainers addition for bioconductor-subseq |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sugarcanecdf |
shpc-registry automated BioContainers addition for bioconductor-sugarcanecdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sugarcaneprobe |
shpc-registry automated BioContainers addition for bioconductor-sugarcaneprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-suitor |
singularity registry hpc automated addition for bioconductor-suitor |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-summarizedbenchmark |
shpc-registry automated BioContainers addition for bioconductor-summarizedbenchmark |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-summarizedexperiment |
shpc-registry automated BioContainers addition for bioconductor-summarizedexperiment |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-summix |
shpc-registry automated BioContainers addition for bioconductor-summix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-supersigs |
shpc-registry automated BioContainers addition for bioconductor-supersigs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-suprahex |
shpc-registry automated BioContainers addition for bioconductor-suprahex |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-surfaltr |
shpc-registry automated BioContainers addition for bioconductor-surfaltr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-survcomp |
shpc-registry automated BioContainers addition for bioconductor-survcomp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-survtype |
shpc-registry automated BioContainers addition for bioconductor-survtype |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sushi |
shpc-registry automated BioContainers addition for bioconductor-sushi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sva |
shpc-registry automated BioContainers addition for bioconductor-sva |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-svanumt |
shpc-registry automated BioContainers addition for bioconductor-svanumt |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-svaplsseq |
shpc-registry automated BioContainers addition for bioconductor-svaplsseq |
idn2, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-svaretro |
shpc-registry automated BioContainers addition for bioconductor-svaretro |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-svm2crm |
shpc-registry automated BioContainers addition for bioconductor-svm2crm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-svm2crmdata |
shpc-registry automated BioContainers addition for bioconductor-svm2crmdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-svmdo |
singularity registry hpc automated addition for bioconductor-svmdo |
git2, hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-swath2stats |
shpc-registry automated BioContainers addition for bioconductor-swath2stats |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-swathxtend |
shpc-registry automated BioContainers addition for bioconductor-swathxtend |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-swfdr |
shpc-registry automated BioContainers addition for bioconductor-swfdr |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-swimr |
shpc-registry automated BioContainers addition for bioconductor-swimr |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-switchbox |
shpc-registry automated BioContainers addition for bioconductor-switchbox |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-switchde |
shpc-registry automated BioContainers addition for bioconductor-switchde |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-synapsis |
shpc-registry automated BioContainers addition for bioconductor-synapsis |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-synapter |
shpc-registry automated BioContainers addition for bioconductor-synapter |
pandoc-citeproc, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-synapterdata |
shpc-registry automated BioContainers addition for bioconductor-synapterdata |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-synaptome.data |
shpc-registry automated BioContainers addition for bioconductor-synaptome.data |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-synaptome.db |
shpc-registry automated BioContainers addition for bioconductor-synaptome.db |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-synergyfinder |
shpc-registry automated BioContainers addition for bioconductor-synergyfinder |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-synextend |
shpc-registry automated BioContainers addition for bioconductor-synextend |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-synlet |
shpc-registry automated BioContainers addition for bioconductor-synlet |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-synmut |
shpc-registry automated BioContainers addition for bioconductor-synmut |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-syntenet |
singularity registry hpc automated addition for bioconductor-syntenet |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-systempiper |
shpc-registry automated BioContainers addition for bioconductor-systempiper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-systempiperdata |
shpc-registry automated BioContainers addition for bioconductor-systempiperdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-systempipeshiny |
shpc-registry automated BioContainers addition for bioconductor-systempipeshiny |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-systempipetools |
shpc-registry automated BioContainers addition for bioconductor-systempipetools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tabulamurisdata |
shpc-registry automated BioContainers addition for bioconductor-tabulamurisdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tabulamurissenisdata |
shpc-registry automated BioContainers addition for bioconductor-tabulamurissenisdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tadar |
singularity registry hpc automated addition for bioconductor-tadar |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tadcompare |
shpc-registry automated BioContainers addition for bioconductor-tadcompare |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tanggle |
shpc-registry automated BioContainers addition for bioconductor-tanggle |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tapseq |
shpc-registry automated BioContainers addition for bioconductor-tapseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-target |
shpc-registry automated BioContainers addition for bioconductor-target |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-targetdecoy |
shpc-registry automated BioContainers addition for bioconductor-targetdecoy |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-targetscan.hs.eg.db |
shpc-registry automated BioContainers addition for bioconductor-targetscan.hs.eg.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-targetscan.mm.eg.db |
shpc-registry automated BioContainers addition for bioconductor-targetscan.mm.eg.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-targetscore |
shpc-registry automated BioContainers addition for bioconductor-targetscore |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-targetscoredata |
shpc-registry automated BioContainers addition for bioconductor-targetscoredata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-targetsearch |
shpc-registry automated BioContainers addition for bioconductor-targetsearch |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-targetsearchdata |
shpc-registry automated BioContainers addition for bioconductor-targetsearchdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tarseqqc |
shpc-registry automated BioContainers addition for bioconductor-tarseqqc |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tartare |
shpc-registry automated BioContainers addition for bioconductor-tartare |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tbsignatureprofiler |
shpc-registry automated BioContainers addition for bioconductor-tbsignatureprofiler |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tbx20bamsubset |
shpc-registry automated BioContainers addition for bioconductor-tbx20bamsubset |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tcc |
shpc-registry automated BioContainers addition for bioconductor-tcc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tcgabiolinks |
shpc-registry automated BioContainers addition for bioconductor-tcgabiolinks |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tcgabiolinksgui.data |
shpc-registry automated BioContainers addition for bioconductor-tcgabiolinksgui.data |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tcgabiolinksgui |
shpc-registry automated BioContainers addition for bioconductor-tcgabiolinksgui |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tcgacrcmirna |
shpc-registry automated BioContainers addition for bioconductor-tcgacrcmirna |
x86_64-conda-linux-gnu-gfortran.bin, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tcgacrcmrna |
shpc-registry automated BioContainers addition for bioconductor-tcgacrcmrna |
x86_64-conda-linux-gnu-gfortran.bin, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tcgamethylation450k |
shpc-registry automated BioContainers addition for bioconductor-tcgamethylation450k |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tcgautils |
shpc-registry automated BioContainers addition for bioconductor-tcgautils |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tcgawgbsdata.hg19 |
shpc-registry automated BioContainers addition for bioconductor-tcgawgbsdata.hg19 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tcgaworkflowdata |
shpc-registry automated BioContainers addition for bioconductor-tcgaworkflowdata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tcseq |
shpc-registry automated BioContainers addition for bioconductor-tcseq |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tdaracne |
shpc-registry automated BioContainers addition for bioconductor-tdaracne |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tdbasedufe |
singularity registry hpc automated addition for bioconductor-tdbasedufe |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tdbasedufeadv |
singularity registry hpc automated addition for bioconductor-tdbasedufeadv |
hb-info, f2py3.11, tjbench, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tekrabber |
singularity registry hpc automated addition for bioconductor-tekrabber |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tenxbraindata |
shpc-registry automated BioContainers addition for bioconductor-tenxbraindata |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tenxbusdata |
shpc-registry automated BioContainers addition for bioconductor-tenxbusdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tenxio |
singularity registry hpc automated addition for bioconductor-tenxio |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tenxpbmcdata |
shpc-registry automated BioContainers addition for bioconductor-tenxpbmcdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tenxplore |
shpc-registry automated BioContainers addition for bioconductor-tenxplore |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tenxvisiumdata |
shpc-registry automated BioContainers addition for bioconductor-tenxvisiumdata |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-teqc |
shpc-registry automated BioContainers addition for bioconductor-teqc |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ternarynet |
shpc-registry automated BioContainers addition for bioconductor-ternarynet |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-terratcgadata |
singularity registry hpc automated addition for bioconductor-terratcgadata |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-test1cdf |
shpc-registry automated BioContainers addition for bioconductor-test1cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-test2cdf |
shpc-registry automated BioContainers addition for bioconductor-test2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-test3cdf |
shpc-registry automated BioContainers addition for bioconductor-test3cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-test3probe |
shpc-registry automated BioContainers addition for bioconductor-test3probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tfarm |
shpc-registry automated BioContainers addition for bioconductor-tfarm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tfbstools |
shpc-registry automated BioContainers addition for bioconductor-tfbstools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tfea.chip |
shpc-registry automated BioContainers addition for bioconductor-tfea.chip |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tfhaz |
shpc-registry automated BioContainers addition for bioconductor-tfhaz |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tfutils |
shpc-registry automated BioContainers addition for bioconductor-tfutils |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tidybulk |
shpc-registry automated BioContainers addition for bioconductor-tidybulk |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tidycoverage |
singularity registry hpc automated addition for bioconductor-tidycoverage |
x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tidyomics |
singularity registry hpc automated addition for bioconductor-tidyomics |
pandoc-lua, x86_64-conda-linux-gnu.cfg, pandoc-server, idle3.13, pydoc3.13, python3.13, python3.13-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tidysbml |
singularity registry hpc automated addition for bioconductor-tidysbml |
x86_64-conda-linux-gnu.cfg, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tidysinglecellexperiment |
shpc-registry automated BioContainers addition for bioconductor-tidysinglecellexperiment |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tidyspatialexperiment |
singularity registry hpc automated addition for bioconductor-tidyspatialexperiment |
dec265, x265, rav1e, SvtAv1EncApp, dav1d, aomdec, aomenc, pandoc-lua, x86_64-conda-linux-gnu.cfg, pandoc-server, idle3.13, pydoc3.13, python3.13, python3.13-config, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, display, identify, import, magick, magick-script |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tidysummarizedexperiment |
shpc-registry automated BioContainers addition for bioconductor-tidysummarizedexperiment |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tidytof |
singularity registry hpc automated addition for bioconductor-tidytof |
x86_64-conda-linux-gnu.cfg, glpsol, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tigre |
shpc-registry automated BioContainers addition for bioconductor-tigre |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tiledbarray |
shpc-registry automated BioContainers addition for bioconductor-tiledbarray |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tilingarray |
shpc-registry automated BioContainers addition for bioconductor-tilingarray |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-timecourse |
shpc-registry automated BioContainers addition for bioconductor-timecourse |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-timecoursedata |
shpc-registry automated BioContainers addition for bioconductor-timecoursedata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-timeomics |
shpc-registry automated BioContainers addition for bioconductor-timeomics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-timerquant |
shpc-registry automated BioContainers addition for bioconductor-timerquant |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-timescape |
shpc-registry automated BioContainers addition for bioconductor-timescape |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-timeseriesexperiment |
shpc-registry automated BioContainers addition for bioconductor-timeseriesexperiment |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-timirgen |
shpc-registry automated BioContainers addition for bioconductor-timirgen |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tin |
shpc-registry automated BioContainers addition for bioconductor-tin |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tinesath1cdf |
shpc-registry automated BioContainers addition for bioconductor-tinesath1cdf |
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GITHUB
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quay.io/biocontainers/bioconductor-tinesath1probe |
shpc-registry automated BioContainers addition for bioconductor-tinesath1probe |
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GITHUB
|
quay.io/biocontainers/bioconductor-tissueenrich |
shpc-registry automated BioContainers addition for bioconductor-tissueenrich |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tissuetreg |
shpc-registry automated BioContainers addition for bioconductor-tissuetreg |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-titancna |
shpc-registry automated BioContainers addition for bioconductor-titancna |
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GITHUB
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quay.io/biocontainers/bioconductor-tkwidgets |
shpc-registry automated BioContainers addition for bioconductor-tkwidgets |
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GITHUB
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quay.io/biocontainers/bioconductor-tloh |
shpc-registry automated BioContainers addition for bioconductor-tloh |
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GITHUB
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quay.io/biocontainers/bioconductor-tmexplorer |
shpc-registry automated BioContainers addition for bioconductor-tmexplorer |
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GITHUB
|
quay.io/biocontainers/bioconductor-tmixclust |
shpc-registry automated BioContainers addition for bioconductor-tmixclust |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tnbc.cms |
shpc-registry automated BioContainers addition for bioconductor-tnbc.cms |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tnt |
shpc-registry automated BioContainers addition for bioconductor-tnt |
gio-launch-desktop, c89, c99 |
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GITHUB
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quay.io/biocontainers/bioconductor-toast |
shpc-registry automated BioContainers addition for bioconductor-toast |
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GITHUB
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quay.io/biocontainers/bioconductor-tofsims |
shpc-registry automated BioContainers addition for bioconductor-tofsims |
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GITHUB
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quay.io/biocontainers/bioconductor-tofsimsdata |
shpc-registry automated BioContainers addition for bioconductor-tofsimsdata |
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GITHUB
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quay.io/biocontainers/bioconductor-tomatocdf |
shpc-registry automated BioContainers addition for bioconductor-tomatocdf |
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GITHUB
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quay.io/biocontainers/bioconductor-tomatoprobe |
shpc-registry automated BioContainers addition for bioconductor-tomatoprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-tomoda |
shpc-registry automated BioContainers addition for bioconductor-tomoda |
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GITHUB
|
quay.io/biocontainers/bioconductor-tomoseqr |
singularity registry hpc automated addition for bioconductor-tomoseqr |
SvtAv1DecApp, SvtAv1EncApp, aomdec, aomenc, asn1Coding, asn1Decoding, asn1Parser, ffmpeg, ffprobe, h264dec, h264enc, lame, p11-kit, p11tool, trust, vpxdec, vpxenc, x264, x265, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv, psktool, sexp-conv, srptool, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script |
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GITHUB
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quay.io/biocontainers/bioconductor-topaseq |
shpc-registry automated BioContainers addition for bioconductor-topaseq |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-topconfects |
shpc-registry automated BioContainers addition for bioconductor-topconfects |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-topdownr |
shpc-registry automated BioContainers addition for bioconductor-topdownr |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-topdownrdata |
shpc-registry automated BioContainers addition for bioconductor-topdownrdata |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
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GITHUB
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quay.io/biocontainers/bioconductor-topgo |
shpc-registry automated BioContainers addition for bioconductor-topgo |
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GITHUB
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quay.io/biocontainers/bioconductor-toxicogx |
shpc-registry automated BioContainers addition for bioconductor-toxicogx |
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GITHUB
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quay.io/biocontainers/bioconductor-tpp |
shpc-registry automated BioContainers addition for bioconductor-tpp |
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GITHUB
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quay.io/biocontainers/bioconductor-tpp2d |
shpc-registry automated BioContainers addition for bioconductor-tpp2d |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-tracktables |
shpc-registry automated BioContainers addition for bioconductor-tracktables |
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GITHUB
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quay.io/biocontainers/bioconductor-trackviewer |
shpc-registry automated BioContainers addition for bioconductor-trackviewer |
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GITHUB
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quay.io/biocontainers/bioconductor-tradeseq |
shpc-registry automated BioContainers addition for bioconductor-tradeseq |
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GITHUB
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quay.io/biocontainers/bioconductor-trajectorygeometry |
shpc-registry automated BioContainers addition for bioconductor-trajectorygeometry |
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GITHUB
|
quay.io/biocontainers/bioconductor-trajectoryutils |
shpc-registry automated BioContainers addition for bioconductor-trajectoryutils |
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GITHUB
|
quay.io/biocontainers/bioconductor-transcriptogramer |
shpc-registry automated BioContainers addition for bioconductor-transcriptogramer |
giffilter, gifsponge, gifecho, gifinto, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
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quay.io/biocontainers/bioconductor-transcriptr |
shpc-registry automated BioContainers addition for bioconductor-transcriptr |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
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quay.io/biocontainers/bioconductor-transformgampoi |
shpc-registry automated BioContainers addition for bioconductor-transformgampoi |
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GITHUB
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quay.io/biocontainers/bioconductor-transite |
shpc-registry automated BioContainers addition for bioconductor-transite |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
|
quay.io/biocontainers/bioconductor-translatome |
shpc-registry automated BioContainers addition for bioconductor-translatome |
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GITHUB
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quay.io/biocontainers/bioconductor-transomics2cytoscape |
shpc-registry automated BioContainers addition for bioconductor-transomics2cytoscape |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage |
|
GITHUB
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quay.io/biocontainers/bioconductor-transview |
shpc-registry automated BioContainers addition for bioconductor-transview |
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GITHUB
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quay.io/biocontainers/bioconductor-trare |
shpc-registry automated BioContainers addition for bioconductor-trare |
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GITHUB
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quay.io/biocontainers/bioconductor-traser |
shpc-registry automated BioContainers addition for bioconductor-traser |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-traviz |
shpc-registry automated BioContainers addition for bioconductor-traviz |
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GITHUB
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quay.io/biocontainers/bioconductor-treeandleaf |
shpc-registry automated BioContainers addition for bioconductor-treeandleaf |
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GITHUB
|
quay.io/biocontainers/bioconductor-treeclimbr |
singularity registry hpc automated addition for bioconductor-treeclimbr |
x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, numpy-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
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quay.io/biocontainers/bioconductor-treeio |
shpc-registry automated BioContainers addition for bioconductor-treeio |
gio-launch-desktop, c89, c99 |
|
GITHUB
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quay.io/biocontainers/bioconductor-treekor |
shpc-registry automated BioContainers addition for bioconductor-treekor |
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GITHUB
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quay.io/biocontainers/bioconductor-treesummarizedexperiment |
shpc-registry automated BioContainers addition for bioconductor-treesummarizedexperiment |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-treg |
singularity registry hpc automated addition for bioconductor-treg |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
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quay.io/biocontainers/bioconductor-trena |
shpc-registry automated BioContainers addition for bioconductor-trena |
xgboost, my_print_defaults, mysql_config, perror, pg_config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-trendy |
shpc-registry automated BioContainers addition for bioconductor-trendy |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tress |
shpc-registry automated BioContainers addition for bioconductor-tress |
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GITHUB
|
quay.io/biocontainers/bioconductor-tricycle |
shpc-registry automated BioContainers addition for bioconductor-tricycle |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-triform |
shpc-registry automated BioContainers addition for bioconductor-triform |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-trigger |
shpc-registry automated BioContainers addition for bioconductor-trigger |
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GITHUB
|
quay.io/biocontainers/bioconductor-trio |
shpc-registry automated BioContainers addition for bioconductor-trio |
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GITHUB
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quay.io/biocontainers/bioconductor-triplex |
shpc-registry automated BioContainers addition for bioconductor-triplex |
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GITHUB
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quay.io/biocontainers/bioconductor-tripr |
shpc-registry automated BioContainers addition for bioconductor-tripr |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-trna |
shpc-registry automated BioContainers addition for bioconductor-trna |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-trnadbimport |
shpc-registry automated BioContainers addition for bioconductor-trnadbimport |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-trnascanimport |
shpc-registry automated BioContainers addition for bioconductor-trnascanimport |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tronco |
shpc-registry automated BioContainers addition for bioconductor-tronco |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tsar |
singularity registry hpc automated addition for bioconductor-tsar |
protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin |
|
GITHUB
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quay.io/biocontainers/bioconductor-tscan |
shpc-registry automated BioContainers addition for bioconductor-tscan |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tscr |
shpc-registry automated BioContainers addition for bioconductor-tscr |
pandoc-server, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tspair |
shpc-registry automated BioContainers addition for bioconductor-tspair |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tsrchitect |
shpc-registry automated BioContainers addition for bioconductor-tsrchitect |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tssi |
shpc-registry automated BioContainers addition for bioconductor-tssi |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ttgsea |
shpc-registry automated BioContainers addition for bioconductor-ttgsea |
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GITHUB
|
quay.io/biocontainers/bioconductor-ttmap |
shpc-registry automated BioContainers addition for bioconductor-ttmap |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-tuberculosis |
shpc-registry automated BioContainers addition for bioconductor-tuberculosis |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tumourmethdata |
singularity registry hpc automated addition for bioconductor-tumourmethdata |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-turbonorm |
shpc-registry automated BioContainers addition for bioconductor-turbonorm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tvtb |
shpc-registry automated BioContainers addition for bioconductor-tvtb |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tweedeseq |
shpc-registry automated BioContainers addition for bioconductor-tweedeseq |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-tweedeseqcountdata |
shpc-registry automated BioContainers addition for bioconductor-tweedeseqcountdata |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-twilight |
shpc-registry automated BioContainers addition for bioconductor-twilight |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-twoddpcr |
shpc-registry automated BioContainers addition for bioconductor-twoddpcr |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txcutr |
shpc-registry automated BioContainers addition for bioconductor-txcutr |
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GITHUB
|
quay.io/biocontainers/bioconductor-txdb.btaurus.ucsc.bostau8.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.btaurus.ucsc.bostau8.refgene |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.btaurus.ucsc.bostau9.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.btaurus.ucsc.bostau9.refgene |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.celegans.ucsc.ce11.ensgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.celegans.ucsc.ce11.ensgene |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.celegans.ucsc.ce11.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.celegans.ucsc.ce11.refgene |
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GITHUB
|
quay.io/biocontainers/bioconductor-txdb.celegans.ucsc.ce6.ensgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.celegans.ucsc.ce6.ensgene |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.drerio.ucsc.danrer10.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.drerio.ucsc.danrer10.refgene |
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GITHUB
|
quay.io/biocontainers/bioconductor-txdb.drerio.ucsc.danrer11.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.drerio.ucsc.danrer11.refgene |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.ggallus.ucsc.galgal4.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.ggallus.ucsc.galgal4.refgene |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.ggallus.ucsc.galgal5.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.ggallus.ucsc.galgal5.refgene |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.ggallus.ucsc.galgal6.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.ggallus.ucsc.galgal6.refgene |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.hsapiens.biomart.igis |
shpc-registry automated BioContainers addition for bioconductor-txdb.hsapiens.biomart.igis |
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GITHUB
|
quay.io/biocontainers/bioconductor-txdb.hsapiens.ucsc.hg18.knowngene |
shpc-registry automated BioContainers addition for bioconductor-txdb.hsapiens.ucsc.hg18.knowngene |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.hsapiens.ucsc.hg19.knowngene |
shpc-registry automated BioContainers addition for bioconductor-txdb.hsapiens.ucsc.hg19.knowngene |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene |
shpc-registry automated BioContainers addition for bioconductor-txdb.hsapiens.ucsc.hg38.knowngene |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.hsapiens.ucsc.hg38.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.hsapiens.ucsc.hg38.refgene |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.mmusculus.ucsc.mm10.ensgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.mmusculus.ucsc.mm10.ensgene |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
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quay.io/biocontainers/bioconductor-txdb.mmusculus.ucsc.mm39.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.mmusculus.ucsc.mm39.refgene |
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GITHUB
|
quay.io/biocontainers/bioconductor-txdb.mmusculus.ucsc.mm9.knowngene |
shpc-registry automated BioContainers addition for bioconductor-txdb.mmusculus.ucsc.mm9.knowngene |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.rnorvegicus.biomart.igis |
shpc-registry automated BioContainers addition for bioconductor-txdb.rnorvegicus.biomart.igis |
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GITHUB
|
quay.io/biocontainers/bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene |
gio-launch-desktop, c89, c99 |
|
GITHUB
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quay.io/biocontainers/bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene |
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GITHUB
|
quay.io/biocontainers/bioconductor-txdb.rnorvegicus.ucsc.rn7.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.rnorvegicus.ucsc.rn7.refgene |
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GITHUB
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quay.io/biocontainers/bioconductor-txdb.sscrofa.ucsc.susscr3.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.sscrofa.ucsc.susscr3.refgene |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tximeta |
shpc-registry automated BioContainers addition for bioconductor-tximeta |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tximport |
shpc-registry automated BioContainers addition for bioconductor-tximport |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tximportdata |
shpc-registry automated BioContainers addition for bioconductor-tximportdata |
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GITHUB
|
quay.io/biocontainers/bioconductor-txreginfra |
shpc-registry automated BioContainers addition for bioconductor-txreginfra |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-typeinfo |
shpc-registry automated BioContainers addition for bioconductor-typeinfo |
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GITHUB
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quay.io/biocontainers/bioconductor-u133aaofav2cdf |
shpc-registry automated BioContainers addition for bioconductor-u133aaofav2cdf |
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GITHUB
|
quay.io/biocontainers/bioconductor-u133x3p.db |
shpc-registry automated BioContainers addition for bioconductor-u133x3p.db |
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GITHUB
|
quay.io/biocontainers/bioconductor-u133x3pcdf |
shpc-registry automated BioContainers addition for bioconductor-u133x3pcdf |
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GITHUB
|
quay.io/biocontainers/bioconductor-u133x3pprobe |
shpc-registry automated BioContainers addition for bioconductor-u133x3pprobe |
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GITHUB
|
quay.io/biocontainers/bioconductor-ucell |
singularity registry hpc automated addition for bioconductor-ucell |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ucscrepeatmasker |
singularity registry hpc automated addition for bioconductor-ucscrepeatmasker |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ularcirc |
shpc-registry automated BioContainers addition for bioconductor-ularcirc |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-umi4cats |
shpc-registry automated BioContainers addition for bioconductor-umi4cats |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-uncoverapplib |
shpc-registry automated BioContainers addition for bioconductor-uncoverapplib |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-undo |
shpc-registry automated BioContainers addition for bioconductor-undo |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-unifiedwmwqpcr |
shpc-registry automated BioContainers addition for bioconductor-unifiedwmwqpcr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-uniprot.ws |
shpc-registry automated BioContainers addition for bioconductor-uniprot.ws |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-uniprotkeywords |
singularity registry hpc automated addition for bioconductor-uniprotkeywords |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-uniquorn |
shpc-registry automated BioContainers addition for bioconductor-uniquorn |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-universalmotif |
shpc-registry automated BioContainers addition for bioconductor-universalmotif |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-updateobject |
singularity registry hpc automated addition for bioconductor-updateobject |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-usort |
shpc-registry automated BioContainers addition for bioconductor-usort |
wget, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/bioconductor-vaexprs |
shpc-registry automated BioContainers addition for bioconductor-vaexprs |
jaotc, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs, pack200, rmic |
|
GITHUB
|
quay.io/biocontainers/bioconductor-vanillaice |
shpc-registry automated BioContainers addition for bioconductor-vanillaice |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-varcon |
shpc-registry automated BioContainers addition for bioconductor-varcon |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-variancepartition |
shpc-registry automated BioContainers addition for bioconductor-variancepartition |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-variantannotation |
shpc-registry automated BioContainers addition for bioconductor-variantannotation |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-variantexperiment |
shpc-registry automated BioContainers addition for bioconductor-variantexperiment |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-variantfiltering |
shpc-registry automated BioContainers addition for bioconductor-variantfiltering |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-varianttools |
shpc-registry automated BioContainers addition for bioconductor-varianttools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-varianttoolsdata |
shpc-registry automated BioContainers addition for bioconductor-varianttoolsdata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-vasp |
shpc-registry automated BioContainers addition for bioconductor-vasp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-vbmp |
shpc-registry automated BioContainers addition for bioconductor-vbmp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-vcfarray |
shpc-registry automated BioContainers addition for bioconductor-vcfarray |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-vdjdive |
singularity registry hpc automated addition for bioconductor-vdjdive |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-vectrapolarisdata |
singularity registry hpc automated addition for bioconductor-vectrapolarisdata |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-vega |
shpc-registry automated BioContainers addition for bioconductor-vega |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-vegamc |
shpc-registry automated BioContainers addition for bioconductor-vegamc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-velociraptor |
shpc-registry automated BioContainers addition for bioconductor-velociraptor |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-veloviz |
shpc-registry automated BioContainers addition for bioconductor-veloviz |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-venndetail |
shpc-registry automated BioContainers addition for bioconductor-venndetail |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-verso |
shpc-registry automated BioContainers addition for bioconductor-verso |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-vidger |
shpc-registry automated BioContainers addition for bioconductor-vidger |
pandoc-citeproc, pandoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-viper |
shpc-registry automated BioContainers addition for bioconductor-viper |
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GITHUB
|
quay.io/biocontainers/bioconductor-viseago |
shpc-registry automated BioContainers addition for bioconductor-viseago |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-visiumio |
singularity registry hpc automated addition for bioconductor-visiumio |
dec265, x265, rav1e, SvtAv1EncApp, dav1d, aomdec, aomenc, x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, display, identify, import, magick, magick-script, mogrify, montage |
|
GITHUB
|
quay.io/biocontainers/bioconductor-visse |
shpc-registry automated BioContainers addition for bioconductor-visse |
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GITHUB
|
quay.io/biocontainers/bioconductor-vitisviniferacdf |
shpc-registry automated BioContainers addition for bioconductor-vitisviniferacdf |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-vitisviniferaprobe |
shpc-registry automated BioContainers addition for bioconductor-vitisviniferaprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-voyager |
singularity registry hpc automated addition for bioconductor-voyager |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, udunits2, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, dap-config, dap-config-pkgconfig, gdal-config, gdal_contour, gdal_grid, gdal_rasterize, gdal_translate |
|
GITHUB
|
quay.io/biocontainers/bioconductor-vplotr |
shpc-registry automated BioContainers addition for bioconductor-vplotr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-vsclust |
singularity registry hpc automated addition for bioconductor-vsclust |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-vsn |
shpc-registry automated BioContainers addition for bioconductor-vsn |
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GITHUB
|
quay.io/biocontainers/bioconductor-vtpnet |
shpc-registry automated BioContainers addition for bioconductor-vtpnet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-vulcan |
shpc-registry automated BioContainers addition for bioconductor-vulcan |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-vulcandata |
shpc-registry automated BioContainers addition for bioconductor-vulcandata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-waddr |
shpc-registry automated BioContainers addition for bioconductor-waddr |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-watermelon |
shpc-registry automated BioContainers addition for bioconductor-watermelon |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-wavcluster |
shpc-registry automated BioContainers addition for bioconductor-wavcluster |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-wavetiling |
shpc-registry automated BioContainers addition for bioconductor-wavetiling |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-wavetilingdata |
shpc-registry automated BioContainers addition for bioconductor-wavetilingdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-weaver |
shpc-registry automated BioContainers addition for bioconductor-weaver |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-webbioc |
shpc-registry automated BioContainers addition for bioconductor-webbioc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-weberdivechalcdata |
singularity registry hpc automated addition for bioconductor-weberdivechalcdata |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-weitrix |
shpc-registry automated BioContainers addition for bioconductor-weitrix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-wes.1kg.wugsc |
shpc-registry automated BioContainers addition for bioconductor-wes.1kg.wugsc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-wgsmapp |
shpc-registry automated BioContainers addition for bioconductor-wgsmapp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-wheatcdf |
shpc-registry automated BioContainers addition for bioconductor-wheatcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-wheatprobe |
shpc-registry automated BioContainers addition for bioconductor-wheatprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-widgettools |
shpc-registry automated BioContainers addition for bioconductor-widgettools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-wiggleplotr |
shpc-registry automated BioContainers addition for bioconductor-wiggleplotr |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-worm.db0 |
shpc-registry automated BioContainers addition for bioconductor-worm.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-wpm |
shpc-registry automated BioContainers addition for bioconductor-wpm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-wppi |
shpc-registry automated BioContainers addition for bioconductor-wppi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-wrench |
shpc-registry automated BioContainers addition for bioconductor-wrench |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-xbseq |
shpc-registry automated BioContainers addition for bioconductor-xbseq |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-xcir |
shpc-registry automated BioContainers addition for bioconductor-xcir |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-xcms |
shpc-registry automated BioContainers addition for bioconductor-xcms |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-xcore |
singularity registry hpc automated addition for bioconductor-xcore |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-xcoredata |
singularity registry hpc automated addition for bioconductor-xcoredata |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-xde |
shpc-registry automated BioContainers addition for bioconductor-xde |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-xenopus.db0 |
shpc-registry automated BioContainers addition for bioconductor-xenopus.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-xenopuslaeviscdf |
shpc-registry automated BioContainers addition for bioconductor-xenopuslaeviscdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-xenopuslaevisprobe |
shpc-registry automated BioContainers addition for bioconductor-xenopuslaevisprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-xeva |
shpc-registry automated BioContainers addition for bioconductor-xeva |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-xhybcasneuf |
shpc-registry automated BioContainers addition for bioconductor-xhybcasneuf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-xina |
shpc-registry automated BioContainers addition for bioconductor-xina |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-xlaevis.db |
shpc-registry automated BioContainers addition for bioconductor-xlaevis.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-xlaevis2cdf |
shpc-registry automated BioContainers addition for bioconductor-xlaevis2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-xlaevis2probe |
shpc-registry automated BioContainers addition for bioconductor-xlaevis2probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-xmapbridge |
shpc-registry automated BioContainers addition for bioconductor-xmapbridge |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-xnastring |
shpc-registry automated BioContainers addition for bioconductor-xnastring |
pandoc-server, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-xtropicaliscdf |
shpc-registry automated BioContainers addition for bioconductor-xtropicaliscdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-xtropicalisprobe |
shpc-registry automated BioContainers addition for bioconductor-xtropicalisprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-xvector |
shpc-registry automated BioContainers addition for bioconductor-xvector |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-yamss |
shpc-registry automated BioContainers addition for bioconductor-yamss |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-yapsa |
shpc-registry automated BioContainers addition for bioconductor-yapsa |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-yaqcaffy |
shpc-registry automated BioContainers addition for bioconductor-yaqcaffy |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-yarn |
shpc-registry automated BioContainers addition for bioconductor-yarn |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ye6100subacdf |
shpc-registry automated BioContainers addition for bioconductor-ye6100subacdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ye6100subbcdf |
shpc-registry automated BioContainers addition for bioconductor-ye6100subbcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ye6100subccdf |
shpc-registry automated BioContainers addition for bioconductor-ye6100subccdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ye6100subdcdf |
shpc-registry automated BioContainers addition for bioconductor-ye6100subdcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-yeast.db0 |
shpc-registry automated BioContainers addition for bioconductor-yeast.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-yeast2.db |
shpc-registry automated BioContainers addition for bioconductor-yeast2.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-yeast2cdf |
shpc-registry automated BioContainers addition for bioconductor-yeast2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-yeast2probe |
shpc-registry automated BioContainers addition for bioconductor-yeast2probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-yeastcc |
shpc-registry automated BioContainers addition for bioconductor-yeastcc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-yeastexpdata |
shpc-registry automated BioContainers addition for bioconductor-yeastexpdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-yeastgsdata |
shpc-registry automated BioContainers addition for bioconductor-yeastgsdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-yeastnagalakshmi |
shpc-registry automated BioContainers addition for bioconductor-yeastnagalakshmi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-yeastrnaseq |
shpc-registry automated BioContainers addition for bioconductor-yeastrnaseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ygs98.db |
shpc-registry automated BioContainers addition for bioconductor-ygs98.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ygs98cdf |
shpc-registry automated BioContainers addition for bioconductor-ygs98cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ygs98frmavecs |
shpc-registry automated BioContainers addition for bioconductor-ygs98frmavecs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ygs98probe |
shpc-registry automated BioContainers addition for bioconductor-ygs98probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-yri1kgv |
shpc-registry automated BioContainers addition for bioconductor-yri1kgv |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-yrimulti |
shpc-registry automated BioContainers addition for bioconductor-yrimulti |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-zebrafish.db |
shpc-registry automated BioContainers addition for bioconductor-zebrafish.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-zebrafish.db0 |
shpc-registry automated BioContainers addition for bioconductor-zebrafish.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-zebrafishcdf |
shpc-registry automated BioContainers addition for bioconductor-zebrafishcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-zebrafishprobe |
shpc-registry automated BioContainers addition for bioconductor-zebrafishprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-zebrafishrnaseq |
shpc-registry automated BioContainers addition for bioconductor-zebrafishrnaseq |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-zellkonverter |
shpc-registry automated BioContainers addition for bioconductor-zellkonverter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-zenith |
singularity registry hpc automated addition for bioconductor-zenith |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/bioconductor-zfpkm |
shpc-registry automated BioContainers addition for bioconductor-zfpkm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-zinbwave |
shpc-registry automated BioContainers addition for bioconductor-zinbwave |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-zlibbioc |
shpc-registry automated BioContainers addition for bioconductor-zlibbioc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-zygositypredictor |
singularity registry hpc automated addition for bioconductor-zygositypredictor |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
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quay.io/biocontainers/bioconvert |
shpc-registry automated BioContainers addition for bioconvert |
abi-dump.2.11.0, abi-load, abi-load.2, abi-load.2.11.0, align-cache.2.11.0, align-info.2.11.0, alignmentSieve, bam-load.2.11.0, bamCompare, bamCoverage, bamPEFragmentSize, bigWigToBedGraph, bigwigCompare, bioconvert, bioconvert_init, bioconvert_stats, biosniff, cache-mgr.2.11.0, ccextract, ccextract.2, ccextract.2.11.0, cg-load.2.11.0, computeGCBias, computeMatrix, computeMatrixOperations, correctGCBias, deeptools, dsrc, estimateReadFiltering, estimateScaleFactor, fasterq-dump-orig.2.11.0, fasterq-dump.2.11.0, fastq-dump-orig.2.11.0, fastq-dump.2.11.0, fastq-load, fastq-load.2, fastq-load.2.11.0, go, gofmt, helicos-load, helicos-load.2, helicos-load.2.11.0, illumina-dump.2.11.0, illumina-load, illumina-load.2, illumina-load.2.11.0, kar.2.11.0, kdbmeta.2.11.0, kget.2.11.0, latf-load.2.11.0, ldc-build-runtime, ldc-profdata, ldc-prune-cache, ldc2, ldmd2, mawk, md5cp.2.11.0, mosdepth, multiBamSummary, multiBigwigSummary, pacbio-load, pacbio-load.2, pacbio-load.2.11.0, pacbio-loadxml, pacbio-loadxml.2, pacbio-loadxml.2.11.0, plink, plotCorrelation, plotCoverage, plotEnrichment, plotFingerprint, plotHeatmap, plotPCA, plotProfile, prefetch-orig.2.11.0, prefetch.2.11.0, rcexplain.2.11.0, read-filter-redact.2.11.0, sam-dump-orig.2.11.0, sam-dump.2.11.0, sff-dump.2.11.0, sff-load, sff-load.2, sff-load.2.11.0, squizz, sra-pileup-orig.2.11.0, sra-pileup.2.11.0, sra-sort-cg.2.11.0, sra-sort.2.11.0, sra-stat.2.11.0, srapath-orig.2.11.0, srapath.2.11.0, sratools.2.11.0, srf-load, srf-load.2, srf-load.2.11.0, test-sra.2.11.0, vdb-config.2.11.0, vdb-copy.2.11.0, vdb-decrypt.2.11.0, vdb-diff.2.11.0, vdb-dump-orig.2.11.0, vdb-dump.2.11.0, vdb-encrypt.2.11.0, vdb-lock.2.11.0, vdb-passwd.2.11.0, vdb-unlock.2.11.0, vdb-validate.2.11.0, wiggletools, sambamba, align-cache.2, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical |
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GITHUB
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quay.io/biocontainers/biodiff |
shpc-registry automated BioContainers addition for biodiff |
biodiff, udiff2vcf, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/biodigest |
singularity registry hpc automated addition for biodigest |
bioservices, gseapy, gtk-builder-tool, gtk-encode-symbolic-svg, gtk-launch, gtk-query-immodules-3.0, gtk-query-settings, wayland-scanner, browse, xkbcli, pcre2posix_test, rsvg-convert, cups-config, ippeveprinter, ipptool, gtk-update-icon-cache, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, hb-info, dbus-cleanup-sockets, dbus-daemon, dbus-launch, dbus-monitor, dbus-run-session, dbus-send, dbus-test-tool, dbus-update-activation-environment, dbus-uuidgen, xslt-config, xsltproc, tqdm |
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GITHUB
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quay.io/biocontainers/bioepic |
shpc-registry automated BioContainers addition for bioepic |
epic, epic-effective, easy_install-3.5, natsort, faidx, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config |
|
GITHUB
|
quay.io/biocontainers/bioexcel_seqqc |
shpc-registry automated BioContainers addition for bioexcel_seqqc |
bxcl_seqqc, cutadapt, fastqc, pigz, unpigz, jaotc, jdeprscan, jhsdb, jimage, jlink, jmod |
|
GITHUB
|
quay.io/biocontainers/biofluff |
shpc-registry automated BioContainers addition for biofluff |
fluff, htseq-count-barcodes, htseq-count, htseq-qa, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py |
|
GITHUB
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quay.io/biocontainers/bioformats |
shpc-registry automated BioContainers addition for bioformats |
bioformats, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, futurize, pasteurize, 2to3-3.8, idle3.8, pydoc3.8, python3.8 |
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GITHUB
|
quay.io/biocontainers/bioframe |
shpc-registry automated BioContainers addition for bioframe |
bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix, pairs_merger |
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GITHUB
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quay.io/biocontainers/biogridpy |
shpc-registry automated BioContainers addition for biogridpy |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/bioinfokit |
shpc-registry automated BioContainers addition for bioinfokit |
tabulate, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump |
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GITHUB
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quay.io/biocontainers/biokit |
shpc-registry automated BioContainers addition for biokit |
easydev_buildPackage, ibrowse, multigit, browse, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, rst2html4.py |
|
GITHUB
|
quay.io/biocontainers/biolib |
shpc-registry automated BioContainers addition for biolib |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc |
|
GITHUB
|
quay.io/biocontainers/biolite-tools |
shpc-registry automated BioContainers addition for biolite-tools |
bl-coverage, bl-exclude, bl-fasta2fastq, bl-fastq2fasta, bl-filter-illumina, bl-insert-stats, bl-interleave, bl-pair-reads, bl-pileup-stats, bl-randomize, bl-threshold |
|
GITHUB
|
quay.io/biocontainers/biolite |
shpc-registry automated BioContainers addition for biolite |
|
|
GITHUB
|
quay.io/biocontainers/biom-format |
shpc-registry automated BioContainers addition for biom-format |
pyqi, unit2, conv-template, from-template, biom, futurize, pasteurize, python2-config, python2.7-config, python2, python2.7 |
|
GITHUB
|
quay.io/biocontainers/biomaj |
shpc-registry automated BioContainers addition for biomaj |
biomaj-cli.py, tabulate, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5 |
|
GITHUB
|
quay.io/biocontainers/bionetcomp |
shpc-registry automated BioContainers addition for bionetcomp |
bionetcomp, gseapy, easydev_buildPackage, ibrowse, multigit, browse, xslt-config, xsltproc, chardetect, f2py3.9, opj_compress, opj_decompress |
|
GITHUB
|
quay.io/biocontainers/bionumpy |
singularity registry hpc automated addition for bionumpy |
bionumpy, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/biopet-bamstats |
shpc-registry automated BioContainers addition for biopet-bamstats |
biopet-bamstats, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-basecounter |
shpc-registry automated BioContainers addition for biopet-basecounter |
biopet-basecounter, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-extractadaptersfastqc |
shpc-registry automated BioContainers addition for biopet-extractadaptersfastqc |
biopet-extractadaptersfastqc, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-fastqsplitter |
shpc-registry automated BioContainers addition for biopet-fastqsplitter |
biopet-fastqsplitter, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-sampleconfig |
shpc-registry automated BioContainers addition for biopet-sampleconfig |
biopet-sampleconfig, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-scatterregions |
shpc-registry automated BioContainers addition for biopet-scatterregions |
biopet-scatterregions, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-seattleseqkit |
shpc-registry automated BioContainers addition for biopet-seattleseqkit |
biopet-seattleseqkit, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-seqstat |
shpc-registry automated BioContainers addition for biopet-seqstat |
biopet-seqstat, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-validateannotation |
shpc-registry automated BioContainers addition for biopet-validateannotation |
biopet-validateannotation, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-validatefastq |
shpc-registry automated BioContainers addition for biopet-validatefastq |
biopet-validatefastq, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-validatevcf |
shpc-registry automated BioContainers addition for biopet-validatevcf |
biopet-validatevcf, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-vcffilter |
shpc-registry automated BioContainers addition for biopet-vcffilter |
biopet-vcffilter, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-vcfstats |
shpc-registry automated BioContainers addition for biopet-vcfstats |
biopet-vcfstats, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet |
shpc-registry automated BioContainers addition for biopet |
|
|
GITHUB
|
quay.io/biocontainers/biophi |
shpc-registry automated BioContainers addition for biophi |
ANARCI, biophi, celery, fairseq-eval-lm, fairseq-generate, fairseq-interactive, fairseq-preprocess, fairseq-score, fairseq-train, fairseq-validate, sacrebleu, sapiens, torchrun, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, vba_extract.py, flask, tabulate, cygdb, cython, cythonize, hmmpgmd_shard |
|
GITHUB
|
quay.io/biocontainers/bioprov |
shpc-registry automated BioContainers addition for bioprov |
bioprov, coveralls, prov-compare, prov-convert, coverage, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, py.test, pytest, prodigal, diffimg |
|
GITHUB
|
quay.io/biocontainers/biopython.convert |
shpc-registry automated BioContainers addition for biopython.convert |
biopython.convert, pbr, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, jp.py, faidx, f2py3.10, 2to3-3.10 |
|
GITHUB
|
quay.io/biocontainers/biopython |
shpc-registry automated BioContainers addition for biopython |
|
|
GITHUB
|
quay.io/biocontainers/bioservices |
shpc-registry automated BioContainers addition for bioservices |
easydev_buildPackage, ibrowse, multigit, browse, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, rst2html4.py |
|
GITHUB
|
quay.io/biocontainers/biosniff |
singularity registry hpc automated addition for biosniff |
biosniff, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/biotdg |
shpc-registry automated BioContainers addition for biotdg |
biotdg, dwgsim, dwgsim_eval, cyvcf2, coloredlogs, humanfriendly, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
|
GITHUB
|
quay.io/biocontainers/biothings_client |
shpc-registry automated BioContainers addition for biothings_client |
normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/biotradis |
shpc-registry automated BioContainers addition for biotradis |
add_tradis_tags, bacteria_tradis, basqcol, check_tradis_tags, combine_tradis_plots, fetchseq, filter_tradis_tags, mixreads, readstats, remove_tradis_tags, simqual, simread, smalt, splitmates, splitreads, tradis_comparison.R, tradis_essentiality.R, tradis_gene_insert_sites, tradis_merge_plots, tradis_plot, trunkreads, config_data, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml, basemlg, chi2, codeml, evolver |
|
GITHUB
|
quay.io/biocontainers/biotransformer |
shpc-registry automated BioContainers addition for biotransformer |
biotransformer, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, 2to3-3.10 |
|
GITHUB
|
quay.io/biocontainers/bioutils |
shpc-registry automated BioContainers addition for bioutils |
normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/biowdl-input-converter |
shpc-registry automated BioContainers addition for biowdl-input-converter |
biowdl-input-converter, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/biox |
singularity registry hpc automated addition for biox |
biox, get_gprof, idle3.13, pydoc3.13, python3.13, python3.13-config, get_objgraph, undill, numpy-config, tqdm |
|
GITHUB
|
quay.io/biocontainers/bird_tool_utils_python |
shpc-registry automated BioContainers addition for bird_tool_utils_python |
x86_64-conda_cos7-linux-gnu-ld, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bis-snp-utils |
shpc-registry automated BioContainers addition for bis-snp-utils |
annotateBed_2way.pl, mergeBamWithSameSM.pl, sep_line_by_name.pl, sortByRefAndCor.pl, uniqLine.pl, vcf2bed.NOME.pl, vcf2bed.pl, vcf2bed6plus2.pl, vcf2bed6plus2.strand.pl, vcf2bedGraph.pl, vcf2coverage.pl, vcf2wig.pl, vcf2wig_ct_coverage.pl, vcf4ToRod_in_specific_pos.pl, gtf2bed.pl, perl5.32.0, streamzip |
|
GITHUB
|
quay.io/biocontainers/bis-snp |
shpc-registry automated BioContainers addition for bis-snp |
|
|
GITHUB
|
quay.io/biocontainers/biscot |
singularity registry hpc automated addition for biscot |
biscot, coloredlogs, humanfriendly, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/biscuit |
shpc-registry automated BioContainers addition for biscuit |
QC.sh, biscuit, build_biscuit_QC_assets.pl, build_biscuit_QC_assets.pl.bak, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/biskit |
shpc-registry automated BioContainers addition for biskit |
bis.py, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/bismark |
shpc-registry automated BioContainers addition for bismark |
Bismark_alignment_modes.pdf, NOMe_filtering, _config.yml, bam2nuc, bismark, bismark2bedGraph, bismark2report, bismark2summary, bismark_genome_preparation, bismark_methylation_extractor, copy_bismark_files_for_release.pl, coverage2cytosine, deduplicate_bismark, extract_exons.py, extract_splice_sites.py, filter_non_conversion, hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, license.txt, methylation_consistency, test_data.fastq, metadata_conda_debug.yaml, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s |
|
GITHUB
|
quay.io/biocontainers/bitmapperbs |
shpc-registry automated BioContainers addition for bitmapperbs |
bitmapperBS, psascan |
|
GITHUB
|
quay.io/biocontainers/bitstring |
shpc-registry automated BioContainers addition for bitstring |
2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/blacksheep-outliers |
shpc-registry automated BioContainers addition for blacksheep-outliers |
deva, qhelpconverter, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner, repc, pylupdate5, pyrcc5 |
|
GITHUB
|
quay.io/biocontainers/blasr |
shpc-registry automated BioContainers addition for blasr |
bam2sam, blasr, loadPulses, pbindex, pbindexdump, pbmerge, pls2fasta, samFilter, samtoh5, samtom4, sawriter, sdpMatcher, easy_install-3.6, uconv, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
|
GITHUB
|
quay.io/biocontainers/blast-legacy |
shpc-registry automated BioContainers addition for blast-legacy |
bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb, impala, makemat |
|
GITHUB
|
quay.io/biocontainers/blast |
shpc-registry automated BioContainers addition for blast |
blast_formatter, blastdb_aliastool, blastdbcheck, blastdbcmd, blastn, blastp, blastx, cleanup-blastdb-volumes.py, convert2blastmask, deltablast, eblast, makeblastdb, psiblast, rpsblast, rpstblastn, tblastn, tblastx, update_blastdb.pl |
|
GITHUB
|
quay.io/biocontainers/blast2galaxy |
singularity registry hpc automated addition for blast2galaxy |
bioblend-galaxy-tests, blast2galaxy, markdown-it, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, pygmentize, normalizer |
|
GITHUB
|
quay.io/biocontainers/blastalign |
shpc-registry automated BioContainers addition for blastalign |
BlastAlign, BlastAlign.py, BlastAlignP, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb, impala, makemat |
|
GITHUB
|
quay.io/biocontainers/blastbesties |
shpc-registry automated BioContainers addition for blastbesties |
blastbesties, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/blastmining |
singularity registry hpc automated addition for blastmining |
blastMining, blastMining_lca.sh, blastMining_lca2.sh, csvtk, f2py3.11, ktClassifyHits, ktImportHits, run_besthit.py, run_lca.py, run_vote.py, run_voteSpecies.py, tab2krona.py, taxonkit, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, ktClassifyBLAST, ktGetContigMagnitudes, ktGetLCA, ktGetLibPath, ktGetTaxIDFromAcc, ktGetTaxInfo, ktImportBLAST, ktImportDiskUsage, ktImportEC, ktImportFCP, ktImportGalaxy, ktImportKrona, ktImportMETAREP-BLAST, ktImportMETAREP-EC, ktImportMGRAST, ktImportPhymmBL, ktImportRDP, ktImportRDPComparison, ktImportTaxonomy, ktImportText |
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GITHUB
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quay.io/biocontainers/blaze2 |
singularity registry hpc automated addition for blaze2 |
blaze, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tqdm, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/bleach |
shpc-registry automated BioContainers addition for bleach |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/blend-bio |
singularity registry hpc automated addition for blend-bio |
blend, sdust |
|
GITHUB
|
quay.io/biocontainers/bleties |
shpc-registry automated BioContainers addition for bleties |
NCRF, bleties, milcor_plot.py, milraa_plot.py, ncrf_cat, ncrf_cat.py, ncrf_consensus_filter, ncrf_consensus_filter.py, ncrf_parse.py, ncrf_resolve_overlaps, ncrf_resolve_overlaps.py, ncrf_sort, ncrf_sort.py, ncrf_summary, ncrf_summary.py, ncrf_to_bed, ncrf_to_bed.py, spoa, muscle, f2py3.7, opj_compress, opj_decompress, opj_dump, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config |
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GITHUB
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quay.io/biocontainers/blinker |
shpc-registry automated BioContainers addition for blinker |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/blksheep |
shpc-registry automated BioContainers addition for blksheep |
blacksheep, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc |
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GITHUB
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quay.io/biocontainers/blobtools |
shpc-registry automated BioContainers addition for blobtools |
blobtools, blobtools-build_nodesdb, compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, qwebengine_convert_dict |
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GITHUB
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quay.io/biocontainers/blockbuster |
shpc-registry automated BioContainers addition for blockbuster |
blockbuster.x |
|
GITHUB
|
quay.io/biocontainers/blockclust |
shpc-registry automated BioContainers addition for blockclust |
EDeN, blockclust, blockclust.py, blockclust_plot.r, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray, mcxassemble |
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GITHUB
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quay.io/biocontainers/bloocoo |
shpc-registry automated BioContainers addition for bloocoo |
Bloocoo |
|
GITHUB
|
quay.io/biocontainers/bloomfiltertrie |
shpc-registry automated BioContainers addition for bloomfiltertrie |
bft, jemalloc-config, jeprof, jemalloc.sh |
|
GITHUB
|
quay.io/biocontainers/blosum |
singularity registry hpc automated addition for blosum |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
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quay.io/biocontainers/bmfilter |
shpc-registry automated BioContainers addition for bmfilter |
bmfilter |
|
GITHUB
|
quay.io/biocontainers/bmge |
shpc-registry automated BioContainers addition for bmge |
bmge, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
|
quay.io/biocontainers/bmtagger |
shpc-registry automated BioContainers addition for bmtagger |
bmfilter, bmtagger.sh, bmtool, extract_fullseq, srprism, test_pcre, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, seedtop, run_with_lock, blast_formatter, blastdb_aliastool, blastdbcheck |
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GITHUB
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quay.io/biocontainers/bmtool |
shpc-registry automated BioContainers addition for bmtool |
bmtool |
|
GITHUB
|
quay.io/biocontainers/bohra |
shpc-registry automated BioContainers addition for bohra |
abricate, abricate-get_db, abritamr, amr_report, amrfinder, amrfinder_update, bohra, create_pan_genome, create_pan_genome_plots.R, croco-0.6-config, csslint-0.6, dna_mutation, extract_proteome_from_gff, fasta2parts, fasta_check, gff_check, iterative_cdhit, kraken2, kraken2-build, kraken2-inspect, lighter, mlst, pan_genome_assembly_statistics, pan_genome_core_alignment, pan_genome_post_analysis, pan_genome_reorder_spreadsheet, parallel_all_against_all_blastp, protein_alignment_from_nucleotides, query_pan_genome, roary, roary-create_pan_genome_plots.R, roary-pan_genome_reorder_spreadsheet, roary-query_pan_genome, roary-unique_genes_per_sample, shovill, skesa, snippy, snippy-clean_full_aln, snippy-core, snippy-multi, snippy-vcf_extract_subs, snippy-vcf_report, snippy-vcf_to_tab, snp-dists, transfer_annotation_to_groups, vcfnormalizesvs, vcfnull2ref, vcfunphase, x86_64-conda_cos6-linux-gnu-pkg-config, yapp, snp-sites, fix-sqn-date, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, mpichversion, mpivars, parkill, prank, vt |
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GITHUB
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quay.io/biocontainers/bold-identification |
shpc-registry automated BioContainers addition for bold-identification |
bold_identification, chardetect, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/bolt-lmm |
shpc-registry automated BioContainers addition for bolt-lmm |
bolt, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/bolt |
shpc-registry automated BioContainers addition for bolt |
|
|
GITHUB
|
quay.io/biocontainers/boltons |
shpc-registry automated BioContainers addition for boltons |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/boms |
singularity registry hpc automated addition for boms |
hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10 |
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GITHUB
|
quay.io/biocontainers/booster |
shpc-registry automated BioContainers addition for booster |
booster |
|
GITHUB
|
quay.io/biocontainers/boquila |
singularity registry hpc automated addition for boquila |
boquila |
|
GITHUB
|
quay.io/biocontainers/borf |
shpc-registry automated BioContainers addition for borf |
borf, doesitcache, compile-et.pl, iptest3, prerr.properties, iptest, ipython3, ipython, cygdb, cython, cythonize |
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GITHUB
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quay.io/biocontainers/botocore |
shpc-registry automated BioContainers addition for botocore |
jp.py, easy_install-3.6, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py |
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GITHUB
|
quay.io/biocontainers/bottle |
shpc-registry automated BioContainers addition for bottle |
bottle.py, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/boutroslabplottinggeneral |
shpc-registry automated BioContainers addition for boutroslabplottinggeneral |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bowtie |
shpc-registry automated BioContainers addition for bowtie |
bowtie, bowtie-align-l, bowtie-align-s, bowtie-build, bowtie-build-l, bowtie-build-s, bowtie-inspect, bowtie-inspect-l, bowtie-inspect-s, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv, perl5.32.1 |
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GITHUB
|
quay.io/biocontainers/bowtie2 |
shpc-registry automated BioContainers addition for bowtie2 |
bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, perl5.26.2, podselect |
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GITHUB
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quay.io/biocontainers/bpipe |
shpc-registry automated BioContainers addition for bpipe |
bg-bpipe, bpipe, bpipe-pbspro.sh, bpipe-slurm.sh, bpipe-torque.sh, bpipe-utils.sh, groovy_script, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
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GITHUB
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quay.io/biocontainers/bpp-core |
shpc-registry automated BioContainers addition for bpp-core |
|
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GITHUB
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quay.io/biocontainers/bpp-phyl |
shpc-registry automated BioContainers addition for bpp-phyl |
|
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GITHUB
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quay.io/biocontainers/bpp-popgen |
shpc-registry automated BioContainers addition for bpp-popgen |
|
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GITHUB
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quay.io/biocontainers/bpp-seq |
shpc-registry automated BioContainers addition for bpp-seq |
|
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GITHUB
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quay.io/biocontainers/bracken |
shpc-registry automated BioContainers addition for bracken |
bracken, bracken-build, combine_bracken_outputs.py, est_abundance.py, generate_kmer_distribution.py, kmer2read_distr, kraken2, kraken2-build, kraken2-inspect, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, tar, edirect.py, filter-columns, fuse-segments |
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GITHUB
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quay.io/biocontainers/braid-mrf |
singularity registry hpc automated addition for braid-mrf |
numba, pycc, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, gif2rgb, gifbuild, gifclrmp, giffix |
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GITHUB
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quay.io/biocontainers/braker |
shpc-registry automated BioContainers addition for braker |
|
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GITHUB
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quay.io/biocontainers/braker2 |
shpc-registry automated BioContainers addition for braker2 |
GeMoMa, PF00225_full.blocks.txt, PF00225_seed.blocks.txt, SplicedAlignment.pm, aa2nonred.pl, add_name_to_gff3.pl, align2hints.pl, aln2wig, augustify.py, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, bam2wig, bamToWig.py, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, braker.pl, braker_cleanup.pl, catchr.pl, cdbfasta, cdbyank, cegma2gff.pl, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, compare_intervals_exact.pl, compare_masking.pl, compileSpliceCands, computeFlankingRegion.pl, createAugustusJoblist.pl, del_from_prfl.pl, downsample_traingenes.pl, ensure_n_training_genes.py, esd2esi, evalCGP.pl, eval_dualdecomp.pl, eval_multi_gtf.pl, executeTestCGP.py, exonerate, exonerate-server, exonerate2hints.pl, exoniphyDb2hints.pl, extractAnno.py, extractTranscriptEnds.pl, fasta2esd, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds, filter-ppx.pl, filterGenemark.pl, filterGenes.pl, filterGenesIn.pl, filterGenesIn_mRNAname.pl, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterIntronsFindStrand.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, filter_augustus_gff.pl, findGenesInIntrons.pl, findGffNamesInFasta.pl, fix_gtf_ids.py, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, gatech_pmp2hints.pl, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, genePredCheck, genePredToBed, genePredToBigGenePred, getAnnoFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, getSeq, get_loci_from_gb.pl, gff2gbSmallDNA.pl, gff2ps_mycustom, gffGetmRNA.pl, gp2othergp.pl, gtf2aa.pl, gtf2gff.pl, gtfToGenePred, gth, gth2gtf.pl, gthclean.sh, gthcleanrec.sh, gthconsensus, gthfilestat, gthgetseq, gthsplit, gthsplit2dim.sh, gushr.py, hal2maf_split.pl, helpMod.pm, hgGcPercent, ipcress, ixIxx, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, load2sqlitedb, log_reg_prothints.pl, lp_solve, maf2conswig.pl, makblk.pl, makdbs, makeMatchLists.pl, makeUtrTrainingSet.pl, make_hub.py, makeidx.pl, makmdm, maskNregions.pl, merge_masking.pl, merge_transcript_sets.pl, moveParameters.pl, msa2prfl.pl, new_species.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, peptides2alternatives.pl, peptides2hints.pl, phastconsDB2hints.pl, polyA2hints.pl, pp_simScore, prints2prfl.pl, pslMap.pl, randomSplit.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, samMap.pl, scipiogff2gff.pl, setStopCodonFreqs.pl, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, sortGeneMark.py, sortgrcd, spaln, splitMfasta.pl, split_wiggle.pl, spspaln.pl, startAlign.pl, summarizeACGTcontent.pl, transMap2hints.pl, tsebra.py, uniquePeptides.pl, utrgff2gbrowse.pl, utrrnaseq, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, yaml2gff.1.4.pl, augustus, bam2hints, etraining, fastBlockSearch, filterBam, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign, wigToBigWig |
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GITHUB
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quay.io/biocontainers/braker3 |
singularity registry hpc automated addition for braker3 |
LICENSE.txt, PF00225_full.blocks.txt, PF00225_seed.blocks.txt, add_name_to_gff3.pl, aln2wig, augustify.py, bamToWig.py, braker.pl, braker_cleanup.pl, catchr.pl, compare_intervals_exact.pl, compare_masking.pl, downsample_traingenes.pl, ensure_n_training_genes.py, esd2esi, evidence.py, executeTestCGP.py, exonerate, exonerate-server, extractAnno.py, fasta2esd, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds, features.py, filterGenemark.pl, filterIntronsFindStrand.pl, filter_augustus_gff.pl, findGenesInIntrons.pl, findRepetitiveProtSeqs.py, fix_gtf_ids.py, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, gatech_pmp2hints.pl, genePredCheck, genePredToBigGenePred, genome_anno.py, get_etp_hints.py, get_gc_content.py, get_loci_from_gb.pl, get_longest_isoform.py, gth, gthclean.sh, gthcleanrec.sh, gthconsensus, gthfilestat, gthgetseq, gthsplit, gthsplit2dim.sh, hgGcPercent, ipcress, ixIxx, log_reg_prothints.pl, makblk.pl, makdbs, make_hub.py, makeidx.pl, makmdm, merge_masking.pl, overlap_graph.py, pp_simScore, print_braker3_setup.py, rename_gtf.py, rename_species.pl, sortGeneMark.py, sortgrcd, spaln, spspaln.pl, stringtie2fa.py, tsebra.py, aa2nonred.pl, cdbfasta, cdbyank, compileSpliceCands, computeFlankingRegion.pl, eval_multi_gtf.pl, filterGenesIn.pl, findGffNamesInFasta.pl, genePredToBed, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, gtf2aa.pl, gth2gtf.pl, setStopCodonFreqs.pl, utrrnaseq, gtfToGenePred, SplicedAlignment.pm, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, bam2wig, bedgraph2wig.pl, blat2gbrowse.pl |
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GITHUB
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quay.io/biocontainers/brass |
shpc-registry automated BioContainers addition for brass |
augment-bam, bamToBw.pl, bam_stats.pl, bam_to_sra_sub.pl, bdf2gdfont.PLS, brass-assemble, brass-group, brass.pl, brassI_filter.pl, brassI_np_in.pl, brassI_pre_filter.pl, brassI_prep_bam.pl, brass_bedpe2vcf.pl, brass_foldback_reads.pl, bwa_aln.pl, bwa_mem.pl, cgpAppendIdsToVcf.pl, cgpVCFSplit.pl, collate_rg_regions.pl, combineResults.pl, compute_coverage.pl, corrected_insertsize.pl, cover, coverage_merge.pl, cpancover, cvtbdf.pl, diff_bams.pl, dotty, esd2esi, exonerate, exonerate-server, faToNib, fasta2esd, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds, filter_with_microbes_and_remapping.pl, filterout-bam, findbp, findbp-all, gcov2perl, get_abs_bkpts_from_clipped_reads.pl, gfClient, gfServer, gnos_pull.pl, grass.pl, ipcress, lneato, make-repeat-file, match_rg_patterns_to_library.pl, merge_double_rgs.pl, monitor.pl, nibFrag, pslPretty, pslReps, pslSort, rearr2bedpe, samcat, samcount, samgroupbyname, samhead, samsort, samsplit, xml_to_bas.pl, yapp, pod_cover, twoBitToFa, blat, velvetg, velveth, twoBitInfo, bp_pairwise_kaks.pl, bp_search2BSML.pl, faToTwoBit, gdlib-config |
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GITHUB
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quay.io/biocontainers/brawn |
singularity registry hpc automated addition for brawn |
brawn, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/break-point-inspector |
shpc-registry automated BioContainers addition for break-point-inspector |
break-point-inspector, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/breakdancer |
shpc-registry automated BioContainers addition for breakdancer |
bam2cfg.pl, breakdancer-max, gdlib-config, bdf2gdfont.pl, bdftogd, gd2copypal, gd2togif, gd2topng, gdcmpgif, gdparttopng, gdtopng, giftogd2 |
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GITHUB
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quay.io/biocontainers/breakfast |
singularity registry hpc automated addition for breakfast |
breakfast, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/breakseq2 |
shpc-registry automated BioContainers addition for breakseq2 |
breakseq2_gen_bplib.py, run_breakseq2.py, cygdb, cython, cythonize, qualfa2fq.pl, xa2multi.pl, bwa, f2py2, f2py2.7, bcftools, vcfutils.pl |
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GITHUB
|
quay.io/biocontainers/breseq |
shpc-registry automated BioContainers addition for breseq |
breseq, gdtools, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, 2to3-3.10 |
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GITHUB
|
quay.io/biocontainers/brewer2mpl |
shpc-registry automated BioContainers addition for brewer2mpl |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
|
quay.io/biocontainers/brockman-pipeline |
shpc-registry automated BioContainers addition for brockman-pipeline |
AMUSED, AMUSED-KS, alignKMers, brockman_pipeline, bundle, bundler, racc, racc2y, shuffleCodons.rb, shuffleCodonsAddMotifs.rb, y2racc, gdbm_dump, gdbm_load, gdbmtool, jemalloc-config, jeprof, twoBitToFa, jemalloc.sh, erb, gem, irb |
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GITHUB
|
quay.io/biocontainers/brooklyn_plot |
singularity registry hpc automated addition for brooklyn_plot |
brooklyn_plot, h5delete, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, tjbench, scanpy, aec, numba, pycc, natsort, tqdm, fonttools, pyftmerge, pyftsubset, ttx |
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GITHUB
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quay.io/biocontainers/bs-seeker2 |
shpc-registry automated BioContainers addition for bs-seeker2 |
AUTHORS, Antisense.py, FilterReads.py, RELEASE_NOTES, bs_seeker2-align.py, bs_seeker2-build.py, bs_seeker2-call_methylation.py, metadata_conda_debug.yaml, perl5.32.0, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l |
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GITHUB
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quay.io/biocontainers/bs_call |
shpc-registry automated BioContainers addition for bs_call |
bs_call, dbSNP_idx |
|
GITHUB
|
quay.io/biocontainers/bsmap |
shpc-registry automated BioContainers addition for bsmap |
bsmap, bsp2sam.py, methdiff.py, methratio.py, sam2bam.sh, build_env_setup.sh, conda_build.sh, fasta-sanitize.pl, plot-ampliconstats, python2-config, python2.7-config, python2, python2.7, idle, python-config |
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GITHUB
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quay.io/biocontainers/bte |
singularity registry hpc automated addition for bte |
protoc, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/btllib |
singularity registry hpc automated addition for btllib |
gunzip, gzexe, gzip, indexlr, lrunzip, lrzcat, lrzip, lrztar, lrzuntar, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zmore, znew, zip, tar, pigz, unpigz, idn2, fasta-sanitize.pl, plot-ampliconstats, wget, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl |
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GITHUB
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quay.io/biocontainers/btrim |
shpc-registry automated BioContainers addition for btrim |
btrim |
|
GITHUB
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quay.io/biocontainers/bttcmp |
shpc-registry automated BioContainers addition for bttcmp |
COG.pl, Gblocks, Plot_ANIheatmap.R, Plot_COG.R, Plot_COG_Abundance.R, Plot_MashHeatmap.R, _gdlib-config, abricate, abricate-get_db, abyss-stack-size, alignGFA, bogart, bogus, bttcmp, canu, canu-time, circlator, contig_break_finder, contig_cleaner, contig_overlap_trimmer, coreprocess.pl, correctOverlaps, create_pan_genome, create_pan_genome_plots.R, dumpBlob, edalign, errorEstimate, extract_proteome_from_gff, falconsense, fastme, filterCorrectionLayouts, filterCorrectionOverlaps, findErrors, findErrors-Dump, fmplot.py, gawk-5.0.1, generateCorrectionLayouts, genome_LenFilter_stats.pl, get_ANImatrix.pl, get_Mash_Matrix.pl, get_all_info_nucl.pl, get_all_info_orfs.pl, get_all_info_prot.pl, get_flag_relative_abundances_table.pl, get_genes_table.pl, gubbins, iterative_cdhit, loadCorrectedReads, loadErates, loadTrimmedReads, mergeRanges, meryl-import, meryl-lookup, mhapConvert, miniasm, minidot, mmapConvert, modeltest-ng, orthofinder, ovStoreBucketizer, ovStoreBuild, ovStoreConfig, ovStoreDump, ovStoreIndexer, ovStoreSorter, ovStoreStats, overlapAlign, overlapConvert, overlapImport, overlapInCore, overlapInCorePartition, overlapPair, pacbio_post_process, pal2nal.pl, pan_genome_assembly_statistics, pan_genome_core_alignment, pan_genome_post_analysis, pan_genome_reorder_spreadsheet, parallel_all_against_all_blastp, pgcgap, plot_3Dpie.R, prefixEditDistance-matchLimitGenerate, protein_alignment_from_nucleotides, query_pan_genome, raxml-ng, raxml-ng-mpi, roary, roary-create_pan_genome_plots.R, roary-pan_genome_reorder_spreadsheet, roary-query_pan_genome, roary-unique_genes_per_sample, run_gubbins.py, scoary, scoary_GUI, scriptlive, sequence, sickle, snippy, snippy-clean_full_aln, snippy-core, snippy-multi, snippy-vcf_extract_subs, snippy-vcf_report, snippy-vcf_to_tab, splitHaplotype, splitReads, sqStoreCreate, sqStoreDumpFASTQ, sqStoreDumpMetaData, tgStoreCompress, tgStoreDump, tgStoreFilter, tgStoreLoad, tgTigDisplay, transfer_annotation_to_groups, triangle2list.pl, trimReads, unicycler, unicycler_align, unicycler_check, unicycler_polish, unicycler_scrub, utgcns, vcf2scoary, vcfnormalizesvs, vcfnull2ref, vcfunphase, wtdbgConvert, yapp, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject |
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GITHUB
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quay.io/biocontainers/bttoxin_digger |
shpc-registry automated BioContainers addition for bttoxin_digger |
BtToxin_Digger, abyss-rresolver-short, abyss-stack-size, alignGFA, bogart, bogus, canu, canu-time, coreprocess.pl, correctOverlaps, draw-tig, dumpBlob, edalign, errorEstimate, falconsense, filterCorrectionLayouts, filterCorrectionOverlaps, findErrors, findErrors-Dump, fixErrors, generateCorrectionLayouts, genome_LenFilter_stats.pl, get_all_info_nucl.pl, get_all_info_orfs.pl, get_all_info_prot.pl, get_counts.pl, get_genes_table.pl, get_stats_summary.pl, irqtop, layoutReads, loadCorrectedReads, loadErates, loadTrimmedReads, lsirq, mergeRanges, mhapConvert, miniasm, minidot, mmapConvert, nsenter, ovStoreBucketizer, ovStoreBuild, ovStoreConfig, ovStoreDump, ovStoreIndexer, ovStoreSorter, ovStoreStats, overlapAlign, overlapConvert, overlapImport, overlapInCore, overlapInCorePartition, overlapPair, pgcgap, prefixEditDistance-matchLimitGenerate, prlimit, sam_add_rg.pl, scriptlive, splitHaplotype, splitReads, sqStoreCreate, sqStoreDumpFASTQ, sqStoreDumpMetaData, tgStoreCompress, tgStoreDump, tgStoreLoad, tgTigDisplay, trimReads, unicycler, unicycler_align, unicycler_check, unicycler_polish, unicycler_scrub, update_version.sh, utgcns, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject |
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GITHUB
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quay.io/biocontainers/bttoxin_scanner |
shpc-registry automated BioContainers addition for bttoxin_scanner |
BtToxin_scanner, COG.pl, Gblocks, Plot_ANIheatmap.R, Plot_COG.R, Plot_COG_Abundance.R, Plot_MashHeatmap.R, _gdlib-config, abricate, abricate-get_db, abyss-stack-size, alignGFA, bogart, bogus, canu, canu-time, circlator, contig_break_finder, contig_cleaner, contig_overlap_trimmer, coreprocess.pl, correctOverlaps, create_pan_genome, create_pan_genome_plots.R, dumpBlob, edalign, errorEstimate, extract_proteome_from_gff, falconsense, fastme, filterCorrectionLayouts, filterCorrectionOverlaps, findErrors, findErrors-Dump, fmplot.py, gawk-5.0.1, generateCorrectionLayouts, genome_LenFilter_stats.pl, get_ANImatrix.pl, get_Mash_Matrix.pl, get_all_info_nucl.pl, get_all_info_orfs.pl, get_all_info_prot.pl, get_flag_relative_abundances_table.pl, get_genes_table.pl, gubbins, iterative_cdhit, loadCorrectedReads, loadErates, loadTrimmedReads, mergeRanges, meryl-import, meryl-lookup, mhapConvert, miniasm, minidot, mmapConvert, modeltest-ng, orthofinder, ovStoreBucketizer, ovStoreBuild, ovStoreConfig, ovStoreDump, ovStoreIndexer, ovStoreSorter, ovStoreStats, overlapAlign, overlapConvert, overlapImport, overlapInCore, overlapInCorePartition, overlapPair, pacbio_post_process, pal2nal.pl, pan_genome_assembly_statistics, pan_genome_core_alignment, pan_genome_post_analysis, pan_genome_reorder_spreadsheet, parallel_all_against_all_blastp, pgcgap, plot_3Dpie.R, prefixEditDistance-matchLimitGenerate, protein_alignment_from_nucleotides, query_pan_genome, raxml-ng, raxml-ng-mpi, roary, roary-create_pan_genome_plots.R, roary-pan_genome_reorder_spreadsheet, roary-query_pan_genome, roary-unique_genes_per_sample, run_gubbins.py, scoary, scoary_GUI, scriptlive, sequence, sickle, snippy, snippy-clean_full_aln, snippy-core, snippy-multi, snippy-vcf_extract_subs, snippy-vcf_report, snippy-vcf_to_tab, splitHaplotype, splitReads, sqStoreCreate, sqStoreDumpFASTQ, sqStoreDumpMetaData, tgStoreCompress, tgStoreDump, tgStoreFilter, tgStoreLoad, tgTigDisplay, transfer_annotation_to_groups, triangle2list.pl, trimReads, unicycler, unicycler_align, unicycler_check, unicycler_polish, unicycler_scrub, utgcns, vcf2scoary, vcfnormalizesvs, vcfnull2ref, vcfunphase, wtdbgConvert, yapp, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject |
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GITHUB
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quay.io/biocontainers/btyper3 |
shpc-registry automated BioContainers addition for btyper3 |
btyper3, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides |
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GITHUB
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quay.io/biocontainers/bubblegun |
singularity registry hpc automated addition for bubblegun |
BubbleGun, idle3.13, pydoc3.13, python3.13, python3.13-config |
|
GITHUB
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quay.io/biocontainers/bucketcache |
shpc-registry automated BioContainers addition for bucketcache |
easy_install-2.7, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5 |
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GITHUB
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quay.io/biocontainers/bufet |
shpc-registry automated BioContainers addition for bufet |
bufet.bin, bufet.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/bugseq-porechop |
shpc-registry automated BioContainers addition for bugseq-porechop |
porechop, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/buildh |
shpc-registry automated BioContainers addition for buildh |
buildH, gsd, nc3tonc4, nc4tonc3, ncinfo, numba, pycc, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy |
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GITHUB
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quay.io/biocontainers/bumbershoot |
shpc-registry automated BioContainers addition for bumbershoot |
adjustScanRankerScoreByGroup, directag, idpAssemble, idpQonvert, idpQuery, myrimatch, pepitome, quameter, tagrecon |
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GITHUB
|
quay.io/biocontainers/burrito-fillings |
shpc-registry automated BioContainers addition for burrito-fillings |
iptest3, iptest, ipython3, ipython, natsort, qhelpconverter, qwebengine_convert_dict, pygmentize, canbusutil, qgltf |
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GITHUB
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quay.io/biocontainers/burrito |
shpc-registry automated BioContainers addition for burrito |
|
|
GITHUB
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quay.io/biocontainers/burst |
shpc-registry automated BioContainers addition for burst |
bcov2-strip, burst_linux_DB12, burst_linux_DB15, lingenome, t2gg |
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GITHUB
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quay.io/biocontainers/busco |
shpc-registry automated BioContainers addition for busco |
busco, busco_configurator.py, find, generate_plot.py, hmmc2, hmmerfm-exactmatch, locate, run-sepp.sh, run_abundance.py, run_sepp.py, run_tipp.py, run_tipp_tool.py, run_upp.py, seppJsonMerger.jar, split_sequences.py, updatedb, xargs, augustus, bam2hints, etraining, fastBlockSearch, filterBam, homGeneMapping, joingenes, prepareAlign, guppy, pplacer |
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GITHUB
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quay.io/biocontainers/buscolite |
singularity registry hpc automated addition for buscolite |
PF00225_full.blocks.txt, PF00225_seed.blocks.txt, add_name_to_gff3.pl, aln2wig, augustify.py, buscolite, executeTestCGP.py, extractAnno.py, findRepetitiveProtSeqs.py, get_loci_from_gb.pl, miniprot, pp_simScore, rename_species.pl, stringtie2fa.py, bamToWig.py, compare_masking.pl, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, merge_masking.pl, aa2nonred.pl, cdbfasta, cdbyank, compileSpliceCands, computeFlankingRegion.pl, eval_multi_gtf.pl, filterGenesIn.pl, findGffNamesInFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, gtf2aa.pl, gth2gtf.pl, setStopCodonFreqs.pl, utrrnaseq, SplicedAlignment.pm, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl |
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GITHUB
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quay.io/biocontainers/bustools |
shpc-registry automated BioContainers addition for bustools |
bustools, mirror_server, mirror_server_stop, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy |
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GITHUB
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quay.io/biocontainers/bwa-aln-interactive |
singularity registry hpc automated addition for bwa-aln-interactive |
bwa-aln-interactive |
|
GITHUB
|
quay.io/biocontainers/bwa-mem2 |
shpc-registry automated BioContainers addition for bwa-mem2 |
bwa-mem2, bwa-mem2.avx, bwa-mem2.avx2, bwa-mem2.avx512bw, bwa-mem2.sse41, bwa-mem2.sse42 |
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GITHUB
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quay.io/biocontainers/bwa-meme |
singularity registry hpc automated addition for bwa-meme |
build_rmis_dna.sh, bwa-meme, bwa-meme-train-prmi, bwa-meme_mode1, bwa-meme_mode1.avx, bwa-meme_mode1.avx2, bwa-meme_mode1.avx512bw, bwa-meme_mode1.sse41, bwa-meme_mode1.sse42, bwa-meme_mode2, bwa-meme_mode2.avx, bwa-meme_mode2.avx2, bwa-meme_mode2.avx512bw, bwa-meme_mode2.sse41, bwa-meme_mode2.sse42, bwa-meme_mode3.avx, bwa-meme_mode3.avx2, bwa-meme_mode3.avx512bw, bwa-meme_mode3.sse41, bwa-meme_mode3.sse42 |
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GITHUB
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quay.io/biocontainers/bwa |
shpc-registry automated BioContainers addition for bwa |
bwa |
|
GITHUB
|
quay.io/biocontainers/bwakit |
shpc-registry automated BioContainers addition for bwakit |
bwa-postalt.js, fermi2, fermi2.pl, htsbox, ropebwt2, run-HLA, run-bwamem, run-gen-ref, samblaster, trimadap, typeHLA-selctg.js, typeHLA.js, typeHLA.sh, seqtk, perl5.32.0, k8, qualfa2fq.pl, xa2multi.pl, bwa, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl |
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GITHUB
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quay.io/biocontainers/bwameth |
shpc-registry automated BioContainers addition for bwameth |
bwameth.py, toolshed, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, bwa |
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GITHUB
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quay.io/biocontainers/bwapy |
shpc-registry automated BioContainers addition for bwapy |
bwamempy, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/bwise |
shpc-registry automated BioContainers addition for bwise |
bcalm, bgreat, btrim, bwise, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config, h5cc |
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GITHUB
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quay.io/biocontainers/bwread |
shpc-registry automated BioContainers addition for bwread |
tabulate, natsort, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config |
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GITHUB
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quay.io/biocontainers/bx-python |
shpc-registry automated BioContainers addition for bx-python |
|
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GITHUB
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quay.io/biocontainers/bxtools |
shpc-registry automated BioContainers addition for bxtools |
bxtools |
|
GITHUB
|
quay.io/biocontainers/byobu |
shpc-registry automated BioContainers addition for byobu |
|
|
GITHUB
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quay.io/biocontainers/bzip2 |
shpc-registry automated BioContainers addition for bzip2 |
bzip2, bzip2recover |
|
GITHUB
|
quay.io/biocontainers/c-ares |
shpc-registry automated BioContainers addition for c-ares |
|
|
GITHUB
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quay.io/biocontainers/c4counter |
singularity registry hpc automated addition for c4counter |
c4counter, sdust, paftools.js, minimap2, k8, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/cactus |
shpc-registry automated BioContainers addition for cactus |
3EdgeTests, _toil_mesos_executor, _toil_worker, bedSort, bigBedToBed, blossom5, blossom_randGraph.py, cPecanAlign, cPecanEm, cPecanLastz, cPecanLastz_D, cPecanLibTests, cPecanModifyHmm, cPecanRealign, cactus, cactus2hal-stitch.sh, cactus2hal.py, cactusAPITests, cactus_addReferenceCoordinates, cactus_analyseAssembly, cactus_bar, cactus_barTests, cactus_batch_mergeChunks, cactus_blast_chunkFlowerSequences, cactus_blast_chunkSequences, cactus_blast_convertCoordinates, cactus_blast_sortAlignments, cactus_caf, cactus_calculateMappingQualities, cactus_check, cactus_convertAlignmentsToInternalNames, cactus_coverage, cactus_covered_intervals, cactus_fastaGenerator, cactus_fasta_fragments.py, cactus_fasta_softmask_intervals.py, cactus_fillAdjacencies, cactus_filterSmallFastaSequences.py, cactus_getReferenceSeq, cactus_halGenerator, cactus_halGeneratorTests, cactus_makeAlphaNumericHeaders.py, cactus_mirrorAndOrientAlignments, cactus_normalisation, cactus_phylogeny, cactus_preprocess, cactus_reference, cactus_secondaryDatabase, cactus_setup, cactus_splitAlignmentOverlaps, cactus_stripUniqueIDs, cactus_workflow_convertAlignmentCoordinates, cactus_workflow_extendFlowers, cactus_workflow_flowerStats, cactus_workflow_getFlowers, cwltest, cwltoil, dbTestScript, docker_test_script, findRegionsExclusivelyInGroup, galaxy-tool-test, hal2assemblyHub.py, hal2chain, hal2fasta, hal2maf, hal2mafMP.py, hal4dExtract, hal4dExtractTest, halAddToBranch, halAlignedExtract, halAlignmentDepth, halApiTests, halAppendCactusSubtree, halAppendSubtree, halBranchMutations, halChainTests, halCoverage, halExtract, halHdf5Tests, halIndels, halLiftover, halLiftoverTests, halLodExtract, halLodInterpolate.py, halMafTests, halMaskExtract, halRandGen, halRemoveGenome, halRenameGenomes, halRenameSequences, halReplaceGenome, halSetMetadata, halSingleCopyRegionsExtract, halSnps, halStats, halSummarizeMutations, halSynteny, halTestGen, halTreeMutations.py, halTreeNIBackground.py, halTreeNIConservation.py, halTreeNITurnover.py, halUpdateBranchLengths, halValidate, halWiggleLiftover, halWriteNucleotides, jobTreeKill, jobTreeRun, jobTreeStats, jobTreeStatus, jobTreeTest_Dependencies.py, kccachetest, kcdirmgr, kcdirtest, kcforestmgr, kcforesttest, kcgrasstest, kchashmgr, kchashtest, kclangctest, kcpolymgr, kcpolytest, kcprototest, kcstashtest, kctreemgr, kctreetest, kcutilmgr, kcutiltest, ktremotemgr, ktremotetest, ktserver, kttimedmgr, kttimedtest, ktutilmgr, ktutilserv, ktutiltest, maf2hal, matchGraph.py, matchingAndOrderingTests, mock-cwl-runner, mulled-build, mulled-build-channel, mulled-build-files, mulled-build-tool, mulled-search, multijob, mwmatching.py, referenceTests, scriptTreeTest_Sort.py, scriptTreeTest_Wrapper.py, scriptTreeTest_Wrapper2.py, sonLibTests, sonLib_cigarTest, sonLib_daemonize.py, sonLib_fastaCTest, sonLib_kvDatabaseTest, stCafTests, stPinchesAndCactiTests, toil, toil-cwl-runner, toil-wdl-runner, wsdump.py, cwltool, pyrsa-decrypt-bigfile, pyrsa-encrypt-bigfile, avro, schema-salad-doc, schema-salad-tool, bedToBigBed, faToTwoBit, asadmin, bundle_image |
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GITHUB
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quay.io/biocontainers/cadd-scripts |
shpc-registry automated BioContainers addition for cadd-scripts |
cadd-install.sh, cadd.sh, stone, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file |
|
GITHUB
|
quay.io/biocontainers/cafe |
shpc-registry automated BioContainers addition for cafe |
cafe5 |
|
GITHUB
|
quay.io/biocontainers/cage |
shpc-registry automated BioContainers addition for cage |
bamdump, cage, cage-classify.py, bamtools, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/cagee |
singularity registry hpc automated addition for cagee |
cagee, diffmat_precalc, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics |
|
GITHUB
|
quay.io/biocontainers/calcs |
shpc-registry automated BioContainers addition for calcs |
calcs, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/calib |
shpc-registry automated BioContainers addition for calib |
calib, calib_cons |
|
GITHUB
|
quay.io/biocontainers/calisp |
singularity registry hpc automated addition for calisp |
calisp, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, f2py3.11, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, 2to3-3.11, idle3.11, pydoc3.11 |
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GITHUB
|
quay.io/biocontainers/calitas |
shpc-registry automated BioContainers addition for calitas |
calitas, appletviewer, idlj, orbd, schemagen, servertool, tnameserv, wsgen, wsimport, xjc, jaotc |
|
GITHUB
|
quay.io/biocontainers/callerpp |
singularity registry hpc automated addition for callerpp |
callerpp, spoa |
|
GITHUB
|
quay.io/biocontainers/callingcardstools |
singularity registry hpc automated addition for callingcardstools |
callingcardstools, dul-receive-pack, dul-upload-pack, dulwich, keyring, pkginfo, poetry, pyproject-build, python-build, virtualenv, doesitcache, jsonschema, dbus-cleanup-sockets, dbus-daemon, dbus-launch, dbus-monitor, dbus-run-session, dbus-send, dbus-test-tool, dbus-update-activation-environment, dbus-uuidgen, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/callstate |
shpc-registry automated BioContainers addition for callstate |
callstate, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/calour |
shpc-registry automated BioContainers addition for calour |
attr, balsam, esdcompat, getfattr, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, jupyter-dejavu, jupyter-execute, lprodump, lrelease-pro, lupdate-pro, meshdebug, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, send2trash, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set |
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GITHUB
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quay.io/biocontainers/cameo |
shpc-registry automated BioContainers addition for cameo |
cameo, grako, httpx, isympy, jupyter-dejavu, jupyter-execute, send2trash, cmark, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run, iptest3 |
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GITHUB
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quay.io/biocontainers/cami-amber |
shpc-registry automated BioContainers addition for cami-amber |
amber.py, setup.py, version.py, bokeh, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.7, opj_compress, opj_decompress, opj_dump |
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GITHUB
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quay.io/biocontainers/cami-opal |
shpc-registry automated BioContainers addition for cami-opal |
opal.py, opal_stats.py, opal_workflow.py, setup.py, version.py, wsdump.py, dendropy-format, doesitcache, iptest3, bokeh, sumlabels.py, sumtrees.py, iptest, ipython3, ipython, cygdb |
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GITHUB
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quay.io/biocontainers/camlhmp |
singularity registry hpc automated addition for camlhmp |
archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, camlhmp, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, executor, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gbf2fsa, gbf2ref, gm2ranges, gm2segs, ini2xml, jsonl2xml, just-first-key, nhance.sh, pma2apa, pma2pme, pmc2bioc, pmc2info, quote-grouped-elements, ref2pmid, refseq-nm-cds, scn2xml, stream-local, test-pmc-index, toml2xml, yaml2xml, rich-click, blastn_vdb, tblastn_vdb, markdown-it, coloredlogs, test_pcre, humanfriendly, pigz, unpigz, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh |
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GITHUB
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quay.io/biocontainers/campyagainst |
singularity registry hpc automated addition for campyagainst |
campyagainst, fastANI, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/campygstyper |
singularity registry hpc automated addition for campygstyper |
campygstyper, fastANI, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/cancerit-allelecount |
shpc-registry automated BioContainers addition for cancerit-allelecount |
alleleCounter, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/cannoli |
shpc-registry automated BioContainers addition for cannoli |
beeline, beeline.cmd, cannoli-shell, cannoli-submit, csv-import, docker-image-tool.sh, elasticurl, elasticurl_cpp, elastipubsub, find-spark-home, find-spark-home.cmd, find_spark_home.py, load-spark-env.cmd, load-spark-env.sh, orc-memory, orc-scan, pyspark, pyspark.cmd, pyspark2.cmd, run-example, run-example.cmd, spark-class, spark-class.cmd, spark-class2.cmd, spark-shell, spark-shell.cmd, spark-shell2.cmd, spark-sql, spark-sql.cmd, spark-sql2.cmd, spark-submit, spark-submit.cmd, spark-submit2.cmd, sparkR, sparkR.cmd, sparkR2.cmd, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin |
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GITHUB
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quay.io/biocontainers/canopy |
singularity registry hpc automated addition for canopy |
cc.bin |
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GITHUB
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quay.io/biocontainers/cansam |
shpc-registry automated BioContainers addition for cansam |
samcat, samcount, samgroupbyname, samhead, samsort, samsplit |
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GITHUB
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quay.io/biocontainers/cansnper |
shpc-registry automated BioContainers addition for cansnper |
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GITHUB
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quay.io/biocontainers/cansnper2 |
shpc-registry automated BioContainers addition for cansnper2 |
CanSNPer2, CanSNPer2-database, CanSNPer2-download, CanSNPer2-test, flextaxd, flextaxd-create, progressiveMauve, ete3, compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util |
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GITHUB
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quay.io/biocontainers/canu |
shpc-registry automated BioContainers addition for canu |
alignGFA, bogart, canu, canu-time, canu.defaults, correctOverlaps, draw-tig, dumpBlob, edalign, errorEstimate, falconsense, filterCorrectionLayouts, filterCorrectionOverlaps, findErrors, findErrors-Dump, fixErrors, generateCorrectionLayouts, layoutReads, loadCorrectedReads, loadErates, loadTrimmedReads, mergeRanges, mhapConvert, mmapConvert, ovStoreBucketizer, ovStoreBuild, ovStoreConfig, ovStoreDump, ovStoreIndexer, ovStoreSorter, ovStoreStats, overlapAlign, overlapCheck, overlapConvert, overlapImport, overlapInCore, overlapInCorePartition, overlapPair, prefixEditDistance-matchLimitGenerate, splitHaplotype, splitReads, sqStoreCreate, sqStoreDumpFASTQ, sqStoreDumpMetaData, tgStoreCompress, tgStoreDump, tgStoreLoad, tgTigDisplay, trimReads, utgcns, meryl, chrpath, gnuplot, xkbcli, pg_config, sdust, qdistancefieldgenerator, qmlpreview, qvkgen, paftools.js |
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GITHUB
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quay.io/biocontainers/canvas |
shpc-registry automated BioContainers addition for canvas |
Canvas, EvaluateCNV |
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GITHUB
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quay.io/biocontainers/cap3 |
shpc-registry automated BioContainers addition for cap3 |
cap3, formcon |
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GITHUB
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quay.io/biocontainers/capc-map |
shpc-registry automated BioContainers addition for capc-map |
capC-MAP, capCdigestfastq, capClocation2fragment, capCmain, capCpair2bg, capCpileup2binned, cutadapt, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect |
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GITHUB
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quay.io/biocontainers/capcruncher |
shpc-registry automated BioContainers addition for capcruncher |
bq, capcruncher, csv-import, docker-credential-gcloud, fetchChromSizes, gcloud, ice, orc-memory, orc-scan, rich-click, time, timezone-dump, trim_galore, gsutil, multiqc, flash, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, cooler |
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GITHUB
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quay.io/biocontainers/caper |
shpc-registry automated BioContainers addition for caper |
autouri, aws, aws.cmd, aws_bash_completer, aws_completer, aws_zsh_completer.sh, caper, create_instance.sh, miniwdl, pygtail, pyhocon, run_mysql_server_docker.sh, run_mysql_server_singularity.sh, wsdump.py, pyrsa-decrypt-bigfile, pyrsa-encrypt-bigfile, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, coloredlogs, humanfriendly, jp.py, py.test |
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GITHUB
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quay.io/biocontainers/captus |
singularity registry hpc automated addition for captus |
Xcalcmem.sh, bloomfilterparser.sh, captus_assembly, clipkit, f2py3.11, falco, 2to3-3.11, idle3.11, kmutate.sh, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, pydoc3.11, python3.11, python3.11-config, runhmm.sh, megahit, megahit_toolkit, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, sketchblacklist2.sh, splitribo.sh, addssu.sh, adjusthomopolymers.sh, analyzeaccession.sh, analyzegenes.sh |
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GITHUB
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quay.io/biocontainers/card_trick |
shpc-registry automated BioContainers addition for card_trick |
card-trick, pronto, f2py3.8, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/carna |
shpc-registry automated BioContainers addition for carna |
LocARNA_RNAz.pm, RNAz.pm, all-interval, aln-seqs.pl, aln2fa.pl, alnsel.pl, alpha, average-dot.pl, bacp, bibd, bin-packing, black-hole, car-sequencing, carna, carna.pl, cartesian-heart, colored-matrix, crew, crossword, crowded-chess, descartes-folium, dominating-queens, domino, donald, dot2pp, efpa, eq20, exparna_p, exploc_p, fzn-gecode, gen-reliab-dot.pl, golf, golomb-ruler, graph-color, grocery, hamming, ind-set, kakuro, knights, langford-number, locarna, locarna-mea.pl, locarna-motif-scan, locarna_deviation, locarna_p, locarna_rnafold_pp, locarnap-predict-and-plot.pl, locarnap-realign-all.pl, locarnap-revcomp.pl, locarnap-revisit-RNAz-hits.pl, locarnap_fit, locarnate, magic-sequence, magic-square, minesweeper, mlocarna, mlocarna_nnames, money, multi-bin-packing, mzn-gecode, nonogram, open-shop, ortho-latin, partition, pentominoes, perfect-square, photo, plot-bmprobs, pp2dot, qcp, queen-armies, queens, radiotherapy, reliability-profile.pl, ribosum2cc, sat, schurs-lemma, sparse, sports-league, steel-mill, steiner, sudoku, tsp, warehouses, word-square, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex |
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GITHUB
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quay.io/biocontainers/carnac-lr |
shpc-registry automated BioContainers addition for carnac-lr |
CARNAC-LR, CARNAC_to_fasta, CARNAC_to_fasta.py, paf_to_CARNAC.py, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/carpedeam |
singularity registry hpc automated addition for carpedeam |
carpedeam, gawk-5.3.0, gawkbug, awk, gawk |
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GITHUB
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quay.io/biocontainers/cartools |
singularity registry hpc automated addition for cartools |
CARTools.py, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim, wgsim_eval.pl, samtools, 2to3-3.10, idle3.10, pydoc3.10 |
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GITHUB
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quay.io/biocontainers/carveme |
singularity registry hpc automated addition for carveme |
acpl, amk_ccc, amk_fft2, amk_grf, amk_hy, amk_m2, amk_p2, atst, benchmark, build_universe, carve, curate_universe, dltest, gapfill, gbase, gcv, gmk_hy, gmk_m2, gmk_m3, gmk_msh, gmk_ub2, gmtst, gord, gotst, gscat, gtst, ipopt, ipopt_sens, isql, iusql, mcv, merge_community, mmk_m2, mmk_m3, mord, mtst, odbc_config, odbcinst, perl5.22.2, scip, slencheck, tableproxy64, gmap, blastn_vdb, tblastn_vdb, isympy, uuid, uuid-config, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis |
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GITHUB
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quay.io/biocontainers/cas-offinder |
shpc-registry automated BioContainers addition for cas-offinder |
bugpoint, c-index-test, cas-offinder, ccmake, clang, clang++, clang-5.0, clang-check, clang-cl, clang-cpp, clang-format, clang-import-test, clang-offload-bundler, clang-rename, cmake, cpack, ctest, ed2k-link, git-clang-format, gost-hash, has160-hash, hwloc-annotate, hwloc-assembler, hwloc-assembler-remote, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distances, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, llc, lli, llvm-ar, llvm-as, llvm-bcanalyzer, llvm-c-test, llvm-cat, llvm-config, llvm-cov, llvm-cvtres, llvm-cxxdump, llvm-cxxfilt, llvm-diff, llvm-dis, llvm-dlltool, llvm-dsymutil, llvm-dwarfdump, llvm-dwp, llvm-extract, llvm-lib, llvm-link, llvm-lto, llvm-lto2, llvm-mc, llvm-mcmarkup, llvm-modextract, llvm-mt, llvm-nm, llvm-objdump, llvm-opt-report, llvm-pdbutil, llvm-profdata, llvm-ranlib, llvm-readelf, llvm-readobj, llvm-rtdyld, llvm-size, llvm-split, llvm-stress, llvm-strings, llvm-symbolizer, llvm-tblgen, llvm-xray, lstopo, lstopo-no-graphics, magnet-link, obj2yaml, opt, poclcc, rhash, sancov, sanstats, scan-build, scan-view, sfv-hash, tiger-hash, tth-hash, verify-uselistorder, whirlpool-hash, yaml2obj, libtoolize, libtool, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/cascade-config |
singularity registry hpc automated addition for cascade-config |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, jsonschema, python3.1 |
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GITHUB
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quay.io/biocontainers/cassiopee |
shpc-registry automated BioContainers addition for cassiopee |
cassiopee, cassiopeeknife, gflags_completions.sh, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/cassiopeia |
singularity registry hpc automated addition for cassiopeia |
cassiopeia-preprocess, ccphylo, itol, itolexport, pandoc-lua, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, shortuuid, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, jupyter-execute, jupyter-dejavu, mpg123, mpg123-id3dump, mpg123-strip, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, mpicalc, yat2m, pandoc-server, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, balsam, lprodump |
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GITHUB
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quay.io/biocontainers/cassis |
shpc-registry automated BioContainers addition for cassis |
cassis, lastz, lastz_32, lastz_D, perl5.32.0, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500, gslj, gslp, gsnd |
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GITHUB
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quay.io/biocontainers/cat |
shpc-registry automated BioContainers addition for cat |
CAT, bzcat, lz4cat, lzcat, xzcat, zstdcat, diamond, prodigal, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/catch |
shpc-registry automated BioContainers addition for catch |
analyze_probe_coverage.py, design.py, design_large.py, design_naively.py, pool.py, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/catch_chimera |
shpc-registry automated BioContainers addition for catch_chimera |
CATCh_v1.run, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/catfasta2phyml |
singularity registry hpc automated addition for catfasta2phyml |
catfasta2phyml |
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GITHUB
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quay.io/biocontainers/cath-tools |
shpc-registry automated BioContainers addition for cath-tools |
cath-assign-domains, cath-cluster, cath-map-clusters, cath-refine-align, cath-resolve-hits, cath-score-align, cath-ssap, cath-superpose |
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GITHUB
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quay.io/biocontainers/cawlign |
singularity registry hpc automated addition for cawlign |
cawlign, shmemrun, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun, shmemcc, shmemfort, aggregate_profile.pl, profile2mat.pl, ompi-clean, ompi-server, orte-clean, orte-info, orte-server, ortecc, orted, orterun, mpiCC, ompi_info |
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GITHUB
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quay.io/biocontainers/cayman |
singularity registry hpc automated addition for cayman |
cayman, numpy-config, qualfa2fq.pl, xa2multi.pl, bwa, minimap2, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/cazy_webscraper |
shpc-registry automated BioContainers addition for cazy_webscraper |
cazy_webscraper, cw_extract_db_seqs, cw_get_genbank_seqs, cw_get_genomics, cw_get_gtdb_taxs, cw_get_ncbi_taxs, cw_get_pdb_structures, cw_get_uniprot_data, cw_query_database, xml2-config.bak, normalizer, tqdm, xslt-config, xsltproc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1 |
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GITHUB
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quay.io/biocontainers/cblaster |
shpc-registry automated BioContainers addition for cblaster |
cblaster, clinker, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, diamond, faidx, normalizer, chardetect, f2py3.9 |
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GITHUB
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quay.io/biocontainers/ccat |
shpc-registry automated BioContainers addition for ccat |
CCAT |
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GITHUB
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quay.io/biocontainers/ccmetagen |
shpc-registry automated BioContainers addition for ccmetagen |
CCMetagen.py, CCMetagen_extract_seqs.py, CCMetagen_merge.py, kma, kma_index, kma_shm, kma_update, ktClassifyBLAST, ktGetContigMagnitudes, ktGetLCA, ktGetLibPath, ktGetTaxIDFromAcc, ktGetTaxInfo, ktImportBLAST, ktImportDiskUsage, ktImportEC, ktImportFCP |
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GITHUB
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quay.io/biocontainers/ccne |
singularity registry hpc automated addition for ccne |
alignmentSieve, bamCompare, bamCoverage, bamPEFragmentSize, bigwigCompare, ccne-acc, ccne-fast, computeGCBias, computeMatrix, computeMatrixOperations, correctGCBias, deeptools, estimateReadFiltering, estimateScaleFactor, hts_AdapterTrimmer, hts_CutTrim, hts_LengthFilter, hts_NTrimmer, hts_Overlapper, hts_PolyATTrim, hts_Primers, hts_QWindowTrim, hts_SeqScreener, hts_Stats, hts_SuperDeduper, multiBamSummary, multiBigwigSummary, plotCorrelation, plotCoverage, plotEnrichment, plotFingerprint, plotHeatmap, plotPCA, plotProfile, faToTwoBit, my_print_defaults, mysql_config, perror, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl, sort-table, spdi2tbl |
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GITHUB
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quay.io/biocontainers/ccphylo |
singularity registry hpc automated addition for ccphylo |
ccphylo |
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GITHUB
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quay.io/biocontainers/ccsmeth |
singularity registry hpc automated addition for ccsmeth |
ccs, ccs-alt, ccsmeth, pbmm2, torchrun, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, tqdm, futurize, pasteurize, fasta-sanitize.pl, shiftBed, plot-ampliconstats, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed |
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GITHUB
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quay.io/biocontainers/cctk |
singularity registry hpc automated addition for cctk |
cctk, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, minced, dendropy-format, jpackage, sumlabels.py, sumtrees.py, cups-config, ippeveprinter, ipptool, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh |
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GITHUB
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quay.io/biocontainers/cd-hit-auxtools |
shpc-registry automated BioContainers addition for cd-hit-auxtools |
cd-hit-dup, cd-hit-lap, read-linker |
|
GITHUB
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quay.io/biocontainers/cd-hit |
shpc-registry automated BioContainers addition for cd-hit |
|
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GITHUB
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quay.io/biocontainers/cdbtools |
shpc-registry automated BioContainers addition for cdbtools |
cdbfasta, cdbyank |
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GITHUB
|
quay.io/biocontainers/cdhit-reader |
singularity registry hpc automated addition for cdhit-reader |
cdhit-compare, cdhit-parser, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div, cd-hit-div.pl, cd-hit-est-2d, cd-hit-para.pl, clstr2tree.pl, clstr2txt.pl, clstr2xml.pl, clstr_cut.pl, clstr_merge.pl, clstr_merge_noorder.pl, clstr_quality_eval.pl, clstr_quality_eval_by_link.pl, clstr_reduce.pl, clstr_renumber.pl, clstr_rep.pl, clstr_reps_faa_rev.pl, clstr_rev.pl |
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GITHUB
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quay.io/biocontainers/cdk-inchi-to-svg |
shpc-registry automated BioContainers addition for cdk-inchi-to-svg |
cdk-inchi-to-svg, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/cdna_cupcake |
shpc-registry automated BioContainers addition for cdna_cupcake |
BED.py, BioReaders.py, MPileUpVariantCaller.py, MummerSNPReader.py, SAMMPileUpReader.py, STAR.py, STARwrapper.py, SeqReaders.py, SeqSplitter.py, UMI_BC_error_correct.py, VariantPhaseCleaner.py, VariantPhaser.py, alignment_stats_from_sam.py, calc_expected_accuracy_from_fastq.py, calc_probe_hit_from_sam.py, chain_fusion_samples.py, chain_samples.py, clip_out_UMI_cellBC.py, collapse_isoforms_by_sam.py, collate_FLNC_gene_info.py, coordinate_mapper.py, create_fake_genome.py, dedup_FLNC_per_cluster.py, demux_by_barcode_for_subsampling.py, demux_by_barcode_groups.py, demux_isoseq2_no_genome.py, demux_isoseq_no_genome.py, demux_isoseq_with_genome.py, err_correct_w_genome.py, fa2fq.py, filter_away_subset.py, filter_by_count.py, filter_lq_isoforms.py, fq2fa.py, fusion_finder.py, get_abundance_post_collapse.py, get_seq_stats.py, get_seqs_from_list.py, group_ORF_sequences.py, ice_pbdagcon2.py, make_file_for_subsampling_from_collapsed.py, match_w_annotation.py, parse_matchAnnot.py, picking_up_ice2.py, randomly_select_sequences.py, revcomp.py, run_IceArrow2.py, run_IceInit2.py, run_IceIterative2.py, run_IcePartial2.py, run_phaser.py, run_preCluster.py, sam_to_bam.py, sam_to_collapsed_gff.py, sam_to_gff3.py, scrub_sample_GFF_junctions.py, simulate.py, simulate_phasing_data_from_fasta.py, snps_to_vcf.py, subsample.py, subsample_with_category.py, summarize_gmap_sam.py, summarize_sample_GFF_junctions.py, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
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GITHUB
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quay.io/biocontainers/cdo |
shpc-registry automated BioContainers addition for cdo |
bufr_compare, bufr_compare_dir, bufr_copy, bufr_count, bufr_dump, bufr_filter, bufr_get, bufr_index_build, bufr_ls, bufr_set, cdo, codes_bufr_filter, codes_count, codes_info, codes_parser, codes_split_file, grib2ppm, grib_compare, grib_copy, grib_count, grib_dump, grib_filter, grib_get, grib_get_data, grib_histogram, grib_index_build, grib_ls, grib_merge, grib_set, grib_to_netcdf, gts_compare, gts_copy, gts_count, gts_dump, gts_filter, gts_get, gts_ls, imgcmp, imginfo, jasper, jiv, metar_compare, metar_copy, metar_dump, metar_filter, metar_get, metar_ls, tigge_check, aec, uuid, uuid-config, projsync, udunits2, invgeod, invproj, projinfo, cct, gie |
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GITHUB
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quay.io/biocontainers/cdskit |
singularity registry hpc automated addition for cdskit |
cdskit, idle3.13, pydoc3.13, python3.13, python3.13-config |
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GITHUB
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quay.io/biocontainers/ceas |
shpc-registry automated BioContainers addition for ceas |
build_genomeBG, ceas, gca, sitepro, my_print_defaults, mysql_config, perror, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/cell-types-analysis |
shpc-registry automated BioContainers addition for cell-types-analysis |
bats, build_cell_ontology_dict.R, cell_types_utils.R, check_labels.R, combine_tool_outputs.R, downsample_cells.R, get_consensus_output.R, get_empirical_dist.R, get_tool_performance_table.R, get_tool_pvals.R, label_analysis_run_post_install_tests.bats, label_analysis_run_post_install_tests.sh, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/cell2cell |
singularity registry hpc automated addition for cell2cell |
gseapy, runxlrd.py, h5tools_test_utils, scanpy, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, h5delete, numba, natsort, f2py3.8, tqdm, fonttools, pyftmerge |
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GITHUB
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quay.io/biocontainers/cellbender |
singularity registry hpc automated addition for cellbender |
cellbender, jupyter-contrib, jupyter-contrib-nbextension, jupyter-nbclassic, jupyter-nbclassic-bundlerextension, jupyter-nbclassic-extension, jupyter-nbclassic-serverextension, jupyter-nbextensions_configurator, jupyter-server, loompy, matplotlib, qtpy, jupyter-console, wsdump, jupyter-qtconsole, jupyter-execute, jupyter-dejavu, send2trash, torchrun, ninja, jupyter-bundlerextension, jupyter-nbextension, jupyter-serverextension, convert-caffe2-to-onnx, convert-onnx-to-caffe2, jupyter-notebook, jupyter-nbconvert, iptest3, jupyter-kernel, jupyter-kernelspec, jupyter-run, iptest, curve_keygen, pt2to3, ptdump, ptrepack, pttree |
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GITHUB
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quay.io/biocontainers/cellpose |
singularity registry hpc automated addition for cellpose |
androiddeployqt6, asn1Coding, asn1Decoding, asn1Parser, assistant6, cellpose, cllayerinfo, designer6, exr2aces, exrenvmap, exrheader, exrinfo, exrmakepreview, exrmaketiled, exrmultipart, exrmultiview, exrstdattr, ffmpeg, ffprobe, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, h264dec, h264enc, imgcmp, imginfo, jasper, jiv, linguist6, opencv_annotation, opencv_interactive-calibration, opencv_model_diagnostics, opencv_version, opencv_visualisation, opencv_waldboost_detector, p11-kit, p11tool, pixeltool6, protoc-25.3.0, qdbus6, qdbusviewer6, qdistancefieldgenerator6, qdoc6, qmake6, qml6, qmleasing6, qmlls6, qmlpreview6, qmlscene6, qt6.conf, qtdiag6, qtplugininfo6, qtpy, rav1e, roifile, setup_vars_opencv4.sh, torch_shm_manager, trust, vpxdec, vpxenc, x264, x265, SvtAv1DecApp, SvtAv1EncApp, dav1d, tiff2fsspec, aomdec, aomenc, dask, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, imageio_download_bin, imageio_remove_bin, skivi, h5tools_test_utils, mpg123, mpg123-id3dump, mpg123-strip |
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GITHUB
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quay.io/biocontainers/cellprofiler-core |
shpc-registry automated BioContainers addition for cellprofiler-core |
aomdec, aomenc, dav1d, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng |
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GITHUB
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quay.io/biocontainers/cellprofiler |
shpc-registry automated BioContainers addition for cellprofiler |
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GITHUB
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quay.io/biocontainers/cellqc |
singularity registry hpc automated addition for cellqc |
cellqc, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, stone, aec, plac_runner.py, yte, scanpy, docutils, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, geosop, cmark, pulptest, cbc, clp, geos-config, snakemake, snakemake-bash-completion, jp.py, tabulate, numba, pycc |
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GITHUB
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quay.io/biocontainers/cellrank-krylov |
shpc-registry automated BioContainers addition for cellrank-krylov |
acpl, amk_ccc, amk_fft2, amk_grf, amk_hy, amk_m2, amk_p2, atst, dggath, dgmap, dgord, dgpart, dgscat, dgtst, dunamai, gbase, gcv, gmk_hy, gmk_m2, gmk_m3, gmk_msh, gmk_ub2, gmtst, gord, gotst, gout, gpart, gscat, gtst, loompy, mcv, mmk_m2, mmk_m3, mord, mtest, mtst, parmetis, pddrive, pddrive_spawn, pometis, ptest, scotch_esmumps, gmap, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, scanpy, oshCC |
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GITHUB
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quay.io/biocontainers/cellrank |
shpc-registry automated BioContainers addition for cellrank |
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GITHUB
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quay.io/biocontainers/cellsnake |
singularity registry hpc automated addition for cellsnake |
ccmake, cellsnake, celltypist, cmake, cpack, ctest, ed2k-link, edonr256-hash, edonr512-hash, gost12-256-hash, gost12-512-hash, has160-hash, kaleido, magnet-link, mathjax-path, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, rhash, sfv-hash, tiger-hash, tth-hash, whirlpool-hash, kraken2, kraken2-build, kraken2-inspect, markdown-it, pg_amcheck, rsync-ssl, rsync, hwloc-gather-cpuid, pdfsig, xxh128sum, xxh32sum, xxh64sum, gdal_create, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo |
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GITHUB
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quay.io/biocontainers/cellsnp-lite |
shpc-registry automated BioContainers addition for cellsnp-lite |
cellsnp-lite, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/celltypist |
shpc-registry automated BioContainers addition for celltypist |
celltypist, scanpy, docutils, igraph, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, cmpfillin, gpmetis |
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GITHUB
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quay.io/biocontainers/cellxgene |
shpc-registry automated BioContainers addition for cellxgene |
cellxgene, gunicorn, flask, jp.py, numba, pycc, natsort, normalizer, f2py3.10, h5clear, h5format_convert, h5watch |
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GITHUB
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quay.io/biocontainers/cenote-taker3 |
singularity registry hpc automated addition for cenote-taker3 |
MitoHighConfidenceFilter, a3m_database_extract, a3m_database_filter, a3m_database_reduce, a3m_extract, a3m_reduce, annot-tsv, archspec, cenote_main.sh, cenotetaker3, cstranslate, dummy_template.sbt, ffindex_apply, ffindex_build, ffindex_from_fasta, ffindex_from_fasta_with_split, ffindex_get, ffindex_modify, ffindex_order, ffindex_reduce, ffindex_unpack, find, gawk-5.3.0, gawkbug, get_ct3_dbs, hhalign, hhalign_omp, hhblits, hhblits_ca3m, hhblits_omp, hhconsensus, hhfilter, hhmake, hhsearch, hhsearch_omp, locate, phanotate.py, pyrodigal, pyrodigal-gv, updatedb, xargs, tbl2asn-test, EukHighConfidenceFilter, aria2c, covels-SE, coves-SE, eufindtRNA, fasta2gsi, sstofa, tRNAscan-SE, tRNAscan-SE.conf, trnascan-1.4, fix-sqn-date, egrep, faketime, fgrep, grep, real-tbl2asn, seqkit, tbl2asn, idn, mmseqs, cmalign, cmbuild, cmcalibrate, cmconvert |
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GITHUB
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quay.io/biocontainers/centreseq |
shpc-registry automated BioContainers addition for centreseq |
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GITHUB
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quay.io/biocontainers/centrifuge-core |
shpc-registry automated BioContainers addition for centrifuge-core |
centrifuge, centrifuge-BuildSharedSequence.pl, centrifuge-RemoveEmptySequence.pl, centrifuge-RemoveN.pl, centrifuge-build, centrifuge-build-bin, centrifuge-class, centrifuge-compress.pl, centrifuge-download, centrifuge-inspect, centrifuge-inspect-bin, centrifuge-kreport, centrifuge-sort-nt.pl, tar, idn2, wget, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/centrifuge |
shpc-registry automated BioContainers addition for centrifuge |
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GITHUB
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quay.io/biocontainers/centrifuger |
singularity registry hpc automated addition for centrifuger |
centrifuger, centrifuger-build, centrifuger-download, centrifuger-inspect, centrifuger-kreport, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tar, idn2, wget |
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GITHUB
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quay.io/biocontainers/centroid_rna_package |
shpc-registry automated BioContainers addition for centroid_rna_package |
centroid_alifold, centroid_fold, centroid_homfold, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold |
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GITHUB
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quay.io/biocontainers/centrosome |
shpc-registry automated BioContainers addition for centrosome |
aomdec, aomenc, dav1d, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng |
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GITHUB
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quay.io/biocontainers/cesar |
singularity registry hpc automated addition for cesar |
cesar |
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GITHUB
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quay.io/biocontainers/cesm |
shpc-registry automated BioContainers addition for cesm |
addr2line, apr-1-config, apu-1-config, ar, as, c++filt, ccmake, cmake, cpack, create_clone, create_newcase, create_test, ctest, dirmngr, dirmngr-client, dumpsexp, dwp, ed2k-link, edonr256-hash, edonr512-hash, elfedit, gold, gost12-256-hash, gost12-512-hash, gpg, gpg-agent, gpg-card, gpg-connect-agent, gpg-error, gpg-error-config, gpg-wks-client, gpg-wks-server, gpgconf, gpgparsemail, gpgrt-config, gpgscm, gpgsm, gpgsplit, gpgtar, gpgv, gprof, h5pcc, h5perf, h5pfc, has160-hash, hmac256, kbxutil, ksba-config, ld, ld.bfd, ld.gold, libassuan-config, libgcrypt-config, magnet-link, mpicalc, nf-config, nm, npth-config, ntbtls-config, objcopy, objdump, ph5diff, query_config, query_testlists, ranlib, readelf, rhash, sfv-hash, size, strings, strip, svn, svnadmin, svnbench, svndumpfilter, svnfsfs, svnlook, svnmucc, svnrdump, svnserve, svnsync, svnversion, tcsh, tiger-hash, tth-hash, watchgnupg, whirlpool-hash, yat2m, mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, db_convert, mpifort, mpic++ |
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GITHUB
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quay.io/biocontainers/cgat-apps |
shpc-registry automated BioContainers addition for cgat-apps |
bq, cgat, docker-credential-gcloud, gcloud, time, gsutil, egrep, fgrep, grep, wigToBigWig, bedGraphToBigWig, bedToBigBed, basenc, b2sum, base32 |
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GITHUB
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quay.io/biocontainers/cgat-core |
shpc-registry automated BioContainers addition for cgat-core |
time, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
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GITHUB
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quay.io/biocontainers/cgat-daisy |
shpc-registry automated BioContainers addition for cgat-daisy |
bq, daisy, docker-credential-gcloud, gcloud, time, gsutil, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod |
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GITHUB
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quay.io/biocontainers/cgat-pipelines-nosetests |
shpc-registry automated BioContainers addition for cgat-pipelines-nosetests |
cgatreport-build, cgatreport-clean, cgatreport-get, cgatreport-profile, cgatreport-quickstart, cgatreport-serve, cgatreport-test, innochecksum, msql2mysql, myisam_ftdump, myisamchk, myisamlog, myisampack, mysql, mysql_client_test, mysql_convert_table_format, mysql_find_rows, mysql_fix_extensions, mysql_plugin, mysql_secure_installation, mysql_setpermission, mysql_tzinfo_to_sql, mysql_upgrade, mysql_waitpid, mysql_zap, mysqlaccess, mysqlaccess.conf, mysqladmin, mysqlbinlog, mysqlbug, mysqlcheck, mysqld, mysqld_multi, mysqld_safe, mysqldump, mysqldumpslow, mysqlhotcopy, mysqlimport, mysqlshow, mysqlslap, mysqltest, pep8, replace, resolve_stack_dump, resolveip, transformseq, weblogo, wigToBigWig, bedGraphToBigWig, bedToBigBed, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot |
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GITHUB
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quay.io/biocontainers/cgat-report |
shpc-registry automated BioContainers addition for cgat-report |
cgatreport-build, cgatreport-clean, cgatreport-get, cgatreport-profile, cgatreport-quickstart, cgatreport-serve, cgatreport-test, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, nosetests, pybabel, bokeh, rst2html4.py, rst2html5.py, rst2html.py |
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GITHUB
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quay.io/biocontainers/cgat-scripts-nosetests |
shpc-registry automated BioContainers addition for cgat-scripts-nosetests |
innochecksum, msql2mysql, myisam_ftdump, myisamchk, myisamlog, myisampack, mysql, mysql_client_test, mysql_convert_table_format, mysql_find_rows, mysql_fix_extensions, mysql_plugin, mysql_secure_installation, mysql_setpermission, mysql_tzinfo_to_sql, mysql_upgrade, mysql_waitpid, mysql_zap, mysqlaccess, mysqlaccess.conf, mysqladmin, mysqlbinlog, mysqlbug, mysqlcheck, mysqld, mysqld_multi, mysqld_safe, mysqldump, mysqldumpslow, mysqlhotcopy, mysqlimport, mysqlshow, mysqlslap, mysqltest, pep8, replace, resolve_stack_dump, resolveip, transformseq, weblogo, wigToBigWig, bedGraphToBigWig, bedToBigBed, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot |
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GITHUB
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quay.io/biocontainers/cgat-scripts |
shpc-registry automated BioContainers addition for cgat-scripts |
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GITHUB
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quay.io/biocontainers/cgatcore |
shpc-registry automated BioContainers addition for cgatcore |
bq, docker-credential-gcloud, gcloud, time, gsutil, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod |
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GITHUB
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quay.io/biocontainers/cgcloud-lib |
shpc-registry automated BioContainers addition for cgcloud-lib |
asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier |
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GITHUB
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quay.io/biocontainers/cgecore |
shpc-registry automated BioContainers addition for cgecore |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/cgelib |
singularity registry hpc automated addition for cgelib |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/cgmlst-dists |
shpc-registry automated BioContainers addition for cgmlst-dists |
cgmlst-dists |
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GITHUB
|
quay.io/biocontainers/cgpbigwig |
shpc-registry automated BioContainers addition for cgpbigwig |
asn1Coding, asn1Decoding, asn1Parser, bam2bw, bam2bwbases, bg2bw, bwcat, bwjoin, detectExtremeDepth, p11-kit, p11tool, trust, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv, psktool |
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GITHUB
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quay.io/biocontainers/cgranges |
singularity registry hpc automated addition for cgranges |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/cgt |
singularity registry hpc automated addition for cgt |
cgt_bacpop |
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GITHUB
|
quay.io/biocontainers/cgview |
shpc-registry automated BioContainers addition for cgview |
cgview, cgview_xml_builder.pl, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml, basemlg, chi2, codeml, evolver, infinitesites |
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GITHUB
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quay.io/biocontainers/chado-tools |
shpc-registry automated BioContainers addition for chado-tools |
chado, pronto, gffutils-cli, activate-global-python-argcomplete, pybabel, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, faidx, pg_config, 2to3-3.6, idle3.6 |
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GITHUB
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quay.io/biocontainers/chain2paf |
singularity registry hpc automated addition for chain2paf |
chain2paf |
|
GITHUB
|
quay.io/biocontainers/chainmap |
shpc-registry automated BioContainers addition for chainmap |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
|
quay.io/biocontainers/changeo |
shpc-registry automated BioContainers addition for changeo |
AlignRecords.py, AlignSets.py, AssemblePairs.py, AssignGenes.py, BuildConsensus.py, BuildTrees.py, ClusterSets.py, CollapseSeq.py, ConvertDb.py, ConvertHeaders.py, CreateGermlines.py, DefineClones.py, EstimateError.py, FilterSeq.py, MakeDb.py, MaskPrimers.py, PairSeq.py, ParseDb.py, ParseHeaders.py, ParseLog.py, SplitSeq.py, UnifyHeaders.py, airr-tools, filter-table, spdi2prod, vsearch, muscle, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh |
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GITHUB
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quay.io/biocontainers/chanjo |
shpc-registry automated BioContainers addition for chanjo |
chanjo, varfilter.py, sambamba, easy_install-2.7, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, python2, python2.7, idle, python-config |
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GITHUB
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quay.io/biocontainers/chap |
shpc-registry automated BioContainers addition for chap |
GMXRC, GMXRC.bash, GMXRC.csh, GMXRC.zsh, GenX_IR, chap, demux.pl, gmx, gmx-completion-gmx.bash, gmx-completion.bash, hwloc-annotate, hwloc-assembler, hwloc-assembler-remote, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distances, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, iga64, llvm-spirv, lstopo, lstopo-no-graphics, ocloc, xplor2gmx.pl, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
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GITHUB
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quay.io/biocontainers/check-sort-order |
shpc-registry automated BioContainers addition for check-sort-order |
check-sort-order |
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GITHUB
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quay.io/biocontainers/checkatlas |
singularity registry hpc automated addition for checkatlas |
checkatlas, checkatlas-workflow, dul-receive-pack, dul-upload-pack, dulwich, h5fuse.sh, keyring, pkginfo, poetry, pyproject-build, python-build, rocm-smi, virtualenv, h5delete, scanpy, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, doesitcache, aec, pycc, hb-info, numba, natsort, tjbench, jsonschema, dbus-cleanup-sockets |
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GITHUB
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quay.io/biocontainers/checkm-genome |
shpc-registry automated BioContainers addition for checkm-genome |
checkm, rppr, guppy, pplacer, dendropy-format, sumlabels.py, sumtrees.py, prodigal, hmmpgmd_shard, easel, esl-mixdchlet |
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GITHUB
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quay.io/biocontainers/checkm2 |
singularity registry hpc automated addition for checkm2 |
checkm2, import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, diamond, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, markdown_py, prodigal, protoc |
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GITHUB
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quay.io/biocontainers/checkqc |
shpc-registry automated BioContainers addition for checkqc |
checkqc, checkqc-ws, interop_aggregate, interop_dumpbin, interop_dumptext, interop_imaging_table, interop_index-summary, interop_plot_by_cycle, interop_plot_by_lane, interop_plot_flowcell, interop_plot_qscore_heatmap, interop_plot_qscore_histogram, interop_plot_sample_qc, interop_summary, sample-sheet, tabulate, normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/checkv |
shpc-registry automated BioContainers addition for checkv |
checkv, prodigal-gv, diamond, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev |
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GITHUB
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quay.io/biocontainers/chembl_structure_pipeline |
shpc-registry automated BioContainers addition for chembl_structure_pipeline |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc, tificc |
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GITHUB
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quay.io/biocontainers/chembl_webresource_client |
shpc-registry automated BioContainers addition for chembl_webresource_client |
chembl_act, chembl_ids, chembl_m2t, chembl_sim, chembl_sub, chembl_t2m, chardetect, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
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quay.io/biocontainers/chemfp |
shpc-registry automated BioContainers addition for chemfp |
fpcat, ob2fps, obfitall, obmm, oe2fps, rdkit2fps, sdf2fps, simsearch, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop |
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GITHUB
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quay.io/biocontainers/chewbbaca |
shpc-registry automated BioContainers addition for chewbbaca |
chewBBACA.py, chewie, clustalw, CA.pm, cacert.pem, clustalw2, index-themes, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi |
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GITHUB
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quay.io/biocontainers/chewiesnake |
shpc-registry automated BioContainers addition for chewiesnake |
Clustering_DistanceMatrix.R, alleleprofile_hasher.py, chewBBACA.py, chewie, chewiesnake, chewiesnake_join, create_alleledbSheet.sh, create_sampleSheet.sh, grapetree, hashID.py, lighter, shovill, skesa, stone, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, fastp, flash, megahit, megahit_toolkit, pilon, unidecode |
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GITHUB
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quay.io/biocontainers/chexalign |
shpc-registry automated BioContainers addition for chexalign |
chexalign, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/chexmix |
shpc-registry automated BioContainers addition for chexmix |
centrimo-plots, chexmix, dtc, fasta-from-bed, fasta-holdout-set, fasta-re-match, index-fasta-file, meme-chip_html_to_tsv, momo, sea, streme, streme_xml_to_html, tgene, xstreme, xstreme_html_to_tsv, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip |
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GITHUB
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quay.io/biocontainers/chia-rep |
shpc-registry automated BioContainers addition for chia-rep |
f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
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quay.io/biocontainers/chicagotools |
shpc-registry automated BioContainers addition for chicagotools |
bam2chicago.sh, fitDistCurve.R, makeDesignFiles.py, makeNBaitsPerBinFile.py, makeNPerBinFile.py, makePeakMatrix.R, makeProxOEFile.py, runChicago.R, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, c89, c99 |
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GITHUB
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quay.io/biocontainers/chip-r |
singularity registry hpc automated addition for chip-r |
ChIP-R, chipr, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/chips |
shpc-registry automated BioContainers addition for chips |
chips, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/chipseq-greylist |
shpc-registry automated BioContainers addition for chipseq-greylist |
chipseq-greylist, ldc-build-runtime, ldc-profdata, ldc-prune-cache, ldc2, ldmd2, sambamba, f2py3.8, htsfile, bgzip, tabix, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/chira |
shpc-registry automated BioContainers addition for chira |
CopomuS.py, IntaRNA, IntaRNA1, IntaRNA2, IntaRNA3, IntaRNA_CSV_p-value.R, IntaRNA_plotRegions.R, IntaRNAduplex, IntaRNAens, IntaRNAexact, IntaRNAhelix, IntaRNAsTar, IntaRNAseed, blockbuster.x, chira_collapse.py, chira_extract.py, chira_map.py, chira_merge.py, chira_quantify.py, chira_utilities.py, clan_annotate, clan_index, clan_output, clan_search, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold |
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GITHUB
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quay.io/biocontainers/chiron |
shpc-registry automated BioContainers addition for chiron |
chiron, unit2, minimap2.py, freeze_graph, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, markdown_py, protoc |
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GITHUB
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quay.io/biocontainers/chisel |
shpc-registry automated BioContainers addition for chisel |
aln2bed.pl, art_454, art_SOLiD, art_illumina, art_profiler_454, art_profiler_illumina, chisel, chisel_bedding, chisel_calling, chisel_cloning, chisel_nonormal, chisel_plotting, chisel_prep, chisel_pseudonormal, chisel_rdr, combinedAvg.pl, empDist.pl, fastqReadAvg.pl, map2bed.pl, summation.pl, gff2gff.py, gawk-5.1.0, awk, gawk, qualfa2fq.pl, xa2multi.pl, bwa, guess-ploidy.py, plot-roh.py, run-roh.pl |
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GITHUB
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quay.io/biocontainers/chiton |
singularity registry hpc automated addition for chiton |
tqdm, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/chopin2 |
singularity registry hpc automated addition for chopin2 |
beeline, beeline.cmd, chopin2, csv-import, docker-image-tool.sh, elasticurl, elasticurl_cpp, elastipubsub, find-spark-home, find-spark-home.cmd, find_spark_home.py, load-spark-env.cmd, load-spark-env.sh, orc-memory, orc-scan, produce_x_platform_fuzz_corpus, pyspark, pyspark.cmd, pyspark2.cmd, run-example, run-example.cmd, run_x_platform_fuzz_corpus, spark-class, spark-class.cmd, spark-class2.cmd, spark-shell, spark-shell.cmd, spark-shell2.cmd, spark-sql, spark-sql.cmd, spark-sql2.cmd, spark-submit, spark-submit.cmd, spark-submit2.cmd, sparkR, sparkR.cmd, sparkR2.cmd, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, numba, pycc, protoc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/chopper |
singularity registry hpc automated addition for chopper |
chopper, clang, clang-15, clang-cl, clang-cpp |
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GITHUB
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quay.io/biocontainers/chorus2 |
shpc-registry automated BioContainers addition for chorus2 |
Chorus2, ChorusDraftPrebuild, ChorusGUI, ChorusHomo, ChorusNGSfilter, ChorusNGSselect, ChorusNoRef, ChorusPBGUI, pyfasta, gff2gff.py, jellyfish, qhelpconverter, bwa, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, qwebengine_convert_dict, plot-vcfstats |
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GITHUB
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quay.io/biocontainers/chromap |
shpc-registry automated BioContainers addition for chromap |
chromap |
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GITHUB
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quay.io/biocontainers/chromatiblock |
shpc-registry automated BioContainers addition for chromatiblock |
C-Sibelia.py, Sibelia, cairosvg, chromatiblock, snpEffAnnotate.py, test_pcre, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, seedtop, run_with_lock, f2py3.8, blast_formatter, blastdb_aliastool |
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GITHUB
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quay.io/biocontainers/chromeister |
shpc-registry automated BioContainers addition for chromeister |
CHROMEISTER, SvtAv1DecApp, SvtAv1EncApp, allVsAll.sh, allVsAll_incremental.sh, aomdec, aomenc, ccmake, cmake, compute_score-nogrid.R, compute_score.R, cpack, ctest, detect_events.py, distro, ed2k-link, edonr256-hash, edonr512-hash, ffmpeg, ffprobe, generate-one-score.sh, gost12-256-hash, gost12-512-hash, h264dec, h264enc, has160-hash, imgcmp, imginfo, index_chromeister.sh, index_chromeister_solo.sh, jasper, jiv, lame, magnet-link, make-cluster.R, make-mean.sh, opencv_annotation, opencv_interactive-calibration, opencv_model_diagnostics, opencv_version, opencv_visualisation, opencv_waldboost_detector, plot.R, plot_diags.R, recompute_scores.sh, rhash, run_and_plot_chromeister.sh, setup_vars_opencv4.sh, sfv-hash, tiger-hash, tth-hash, unfiltered_plot.R, vpxdec, vpxenc, whirlpool-hash, x264, x265, ninja, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv |
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GITHUB
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quay.io/biocontainers/chromhmm |
shpc-registry automated BioContainers addition for chromhmm |
ChromHMM.sh, download_chromhmm_data.sh, funzip, unzipsfx, zipgrep, zipinfo, unzip, jfr, jaotc, aserver, jdeprscan, jhsdb |
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GITHUB
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quay.io/biocontainers/chromimpute |
shpc-registry automated BioContainers addition for chromimpute |
ChromImpute, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/chromograph |
singularity registry hpc automated addition for chromograph |
chromograph, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/chromosight |
shpc-registry automated BioContainers addition for chromosight |
chromosight, cooler, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix |
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GITHUB
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quay.io/biocontainers/chromosomer |
shpc-registry automated BioContainers addition for chromosomer |
bioformats, chromosomer, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, futurize, pasteurize, python2-config, python2.7-config, python2, python2.7 |
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GITHUB
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quay.io/biocontainers/chromsize |
singularity registry hpc automated addition for chromsize |
chromsize, chromsize-benchmark |
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GITHUB
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quay.io/biocontainers/chronumental |
singularity registry hpc automated addition for chronumental |
chronumental, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, protoc, tqdm, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/chunked-scatter |
shpc-registry automated BioContainers addition for chunked-scatter |
chunked-scatter, scatter-regions, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/cialign |
singularity registry hpc automated addition for cialign |
CIAlign, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, gif2rgb, gifbuild, gifclrmp, giffix, giftext, giftool |
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GITHUB
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quay.io/biocontainers/cif2cell |
shpc-registry automated BioContainers addition for cif2cell |
cif2cell, vasp2cif, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/cigar |
shpc-registry automated BioContainers addition for cigar |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/circexplorer |
shpc-registry automated BioContainers addition for circexplorer |
|
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GITHUB
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quay.io/biocontainers/circexplorer2 |
shpc-registry automated BioContainers addition for circexplorer2 |
CIRCexplorer2, bam2fastx, bam_merge, bed_to_juncs, contig_to_chr_coords, cuffcompare, cuffdiff, cufflinks, cuffmerge, cuffnorm, cuffquant, fast_circ.py, fetch_ucsc.py, fix_map_ordering, genePredToGtf, gffread, gtfToGenePred, gtf_juncs, gtf_to_fasta, gtf_to_sam, juncs_db, long_spanning_reads, map2gtf, prep_reads, sam_juncs, samtools_0.1.18, segment_juncs, sra_to_solid, tophat, tophat-fusion-post, tophat2, tophat_reports, bedGraphToBigWig, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect |
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GITHUB
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quay.io/biocontainers/circlator |
shpc-registry automated BioContainers addition for circlator |
AMOScmp, AMOScmp-shortReads, AMOScmp-shortReads-alignmentTrimmed, Bundler, Chainer, FRCurve, FilterEdgesByCluster, Joiner, Linearize, MarkRepeats, Minimo, OrientContigs, OutputMotifs, OutputResults, OutputScaffolds, QtWebPluginProcess, QtWebProcess, RankMotifs, ace2contig, agp2amos, alignGFA, amos2ace, amos2frg, amos2mates, amos2sq, amosvalidate, analyze-read-depth, analyzeSNPs, arachne2ctg, arachne2scaff, arrive, arrive2, asmQC, asmQC2, assembleRNAs, astats, bank-clean, bank-combine, bank-mapping, bank-report, bank-transact, bank-tutorial, bank-unlock, bank2contig, bank2coverage, bank2fasta, bank2lib, bank2sam, bank2scaff, benchmark2arachne, benchmark2ca, benchmark2mates, benchmark2ta, benchmark_qual, benchmark_seq, blasr2coords, blat2nucmer, bogart, bogus, ca2ctg, ca2mates, ca2scaff, ca2singletons, ca2ta, canu, casm-breaks, casm-layout, castats, cavalidate, cestat-cov, cgb2ctg, circlator, clk, clusterSnps, contig-cmp, contig2contig, contig_break_finder, contig_cleaner, contig_overlap_trimmer, coords2cam, correctOverlaps, count-kmers, count-qmers, ctg2fasta, ctg2umdcontig, ctgovl, cvgChop, cvgStat, dbus-daemon-launch-helper, delta2clr, delta2cvg, dumpBlob, dumpContigsAsReads, dumpFeatures, dumpmates, dumpreads, edalign, errorEstimate, excl_seqs, extractContig, extractScaffold, falconsense, fasta_select_len, fasta_to_fastq, fastq64_to_fastq33, fastqAnalyze, fastqSample, fastqSimulate, fastqSimulate-sort, fastq_filter, fastq_rename, fastq_to_fasta_fast, fastqqc, filterCorrectionLayouts, filterCorrectionOverlaps, filter_contig, filter_seq, filterfrg, find-duplicate-reads, find-query-breaks, find-tandem, findChimeras, findErrors, findErrors-Dump, findMissingMates, findTcovSnp, find_ends, fixfastq, fixfrg, fixlib, frg-umd-merge, frg2fasta, frg2fastq, frg2ta, gap-links, gc-content-plot, gccontent, gene_asm, generateCorrectionLayouts, genome-complexity, genome-complexity-fast, getFRCvalues, getN50, getlengths, gnuplot_qt, goBambus2, grow-readbank, gst-completion-helper, gst-plugin-scanner, gst-ptp-helper, hash-overlap, insert-sizes, iterate, kmer-count, kmer-cov, kmer-cov-plot, kmers, ktrimfrg, library-histogram, list-linked-contigs, listGCContent, listReadPlacedStatus, listSingletonMates, listSurrogates, listcontigreads, load-overlaps, loadCorrectedReads, loadErates, loadFeatures, loadTrimmedReads, make-consensus, make-consensus_poly, merge-contigs, message-count, message-extract, message-validate, mhapConvert, minimus, minimus2, minimus2-blat, missing-reads, mmapConvert, normalizeScaffold, nucmer2ovl, nucmerAnnotate, olapsFromContig, ovStoreBucketizer, ovStoreBuild, ovStoreConfig, ovStoreDump, ovStoreIndexer, ovStoreSorter, ovStoreStats, overlap-align, overlapConvert, overlapImport, overlapInCore, overlapInCorePartition, overlapPair, ovl-degr-dist, ovl2OVL, pacbio_post_process, parsecasm, partitionBank, phd2afg, postCAqc, preTA, preassembleFrgs, prefixEditDistance-matchLimitGenerate, printScaff, pullTArchive, pyrosim, qmer-filter, read-cov-plot, readConsensus, readinfo2cam, rearrangeSeqs, recallConsensus, renameReads, rerunMultiTest, resetFragLibrary, revFasta, revScaffold, runAmos, runMultiTest, runTA, runTest, running-cmp, samPileupConsensus, samtoafg, scaff2fasta, scaffoldRange2Ungapped, select-reads, sequence, show-ma-asm, shuffleBank, sidebyside, sim-cover-depth, sim-cover2, sim-shotgun, simple-overlap, simpleContigLoader, simplifyLibraries, singles, sort2, splitHaplotype, splitReads, sqStoreCreate, sqStoreCreatePartition, sqStoreDumpFASTQ, sqStoreDumpMetaData, stats, summarizeMultiTest, suspiciousfeat2region, ta2ace, tab2ovls, tagsum-reduce, tandemCollapse, tarchive2amos, tarchive2ca, tgStoreCompress, tgStoreCoverageStat, tgStoreDump, tgStoreFilter, tgStoreLoad, tgTigDisplay, tigger, tiling2cam, toAmos, toAmos_new, toArachne, trace_comment, trace_comments, trace_convert, trace_scf_dump, trace_seq, translate-fasta, trimByOvl, trimReads, trimends, trimfrg, untangle, updateBankPositions, updateClrRanges, updateDeltaClr, updateLibSizes, utgcns, vecfix, verify-layout, wtdbgConvert, meryl, fastaq, gnuplot, giffilter, gifsponge, spades-bwa, spades-core, spades-corrector-core, spades-gbuilder, spades-gmapper |
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GITHUB
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quay.io/biocontainers/circle-map-cpp |
singularity registry hpc automated addition for circle-map-cpp |
circle_map++, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap, groupBy, intersectBed, linksBed, mapBed, maskFastaFromBed, mergeBed, multiBamCov |
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GITHUB
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quay.io/biocontainers/circle-map |
shpc-registry automated BioContainers addition for circle-map |
Circle-Map, numba, pycc, tqdm, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv |
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GITHUB
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quay.io/biocontainers/circminer |
shpc-registry automated BioContainers addition for circminer |
circminer, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
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GITHUB
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quay.io/biocontainers/circos-tools |
shpc-registry automated BioContainers addition for circos-tools |
binlinks, bundlelinks, calcdatarange, clustal2link, colorinterpolate, convertlinks, filterlinks, make-conf, make-table, orderchr, parse-category, parse-table, randomdata, randomlinks, resample, config_data, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml, basemlg, chi2, codeml, evolver |
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GITHUB
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quay.io/biocontainers/circos |
shpc-registry automated BioContainers addition for circos |
|
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GITHUB
|
quay.io/biocontainers/circrna_finder |
singularity registry hpc automated addition for circrna_finder |
filterCirc.awk, filterSpliceSiteCircles.pl, nrForwardSplicedReads.pl, postProcessStarAlignment.pl, runStar.pl, starCirclesToBed.pl, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd, df, dir, dircolors, dirname, du, echo, env |
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GITHUB
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quay.io/biocontainers/circtools |
singularity registry hpc automated addition for circtools |
DCC, FUCHS, circtools, circtools_circtest_wrapper.R, circtools_detect_write_skip_tracks.pl, circtools_enrich_visualization.R, circtools_exon_wrapper.R, circtools_generate_flanking_introns.py, circtools_generate_intron_gtf.sh, circtools_merge_enrich_results.sh, circtools_primex_formatter.R, circtools_primex_wrapper.R, circtools_quickcheck_wrapper.R, circtools_reconstruct_visualization.R, circtools_sirna_formatter.R, create_igv_script.py, create_igv_script_from_gene_names.py, create_igv_script_from_position_list.py, detect_new_exons_from_fuchs_data.py, get_introns_from_ensembl.pl, guided_denovo_circle_structure_parallel, htseq-count-barcodes, make_coverage_picture.R, summarized_coverage_profiles.R, htseq-count, htseq-qa, fonttools, pyftmerge, pyftsubset, ttx, brotli, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap |
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GITHUB
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quay.io/biocontainers/circularmapper |
shpc-registry automated BioContainers addition for circularmapper |
circulargenerator, realignsamfile, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/circulocov |
singularity registry hpc automated addition for circulocov |
circulocov, sdust, k8, paftools.js, minimap2, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/ciri-full |
singularity registry hpc automated addition for ciri-full |
CIRI, CIRI-AS, CIRI-AS.pl, CIRI-full, CIRI-full.jar, CIRI.pl, jwebserver, jpackage, qualfa2fq.pl, xa2multi.pl, bwa, cups-config, ippeveprinter, ipptool, hb-info, jfr, tjbench, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java, javac, javadoc, javap |
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GITHUB
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quay.io/biocontainers/ciriquant |
singularity registry hpc automated addition for ciriquant |
CIRI_DE, CIRI_DE_replicate, CIRIquant, compare_HLA.py, compare_HLA_Omixon.py, extract_Omixon_HLA.py, extract_exons.py, extract_splice_sites.py, hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, hisatgenotype.py, hisatgenotype_HLA_genotyping_PGs.py, hisatgenotype_build_genome.py, hisatgenotype_convert_codis.py, hisatgenotype_extract_codis_data.py, hisatgenotype_extract_cyp_data.py, hisatgenotype_extract_reads.py, hisatgenotype_extract_vars.py, hisatgenotype_hla_cyp.py, hisatgenotype_locus.py, hisatgenotype_locus_samples.py, prepDE.py, prep_CIRIquant, run_extract_CP.sh, run_extract_ILMN.sh, run_genotype_build.sh, run_hisat2_build.sh, run_type_CP.sh, stringtie, qualfa2fq.pl, xa2multi.pl, bwa, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl |
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GITHUB
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quay.io/biocontainers/cirtap |
shpc-registry automated BioContainers addition for cirtap |
cirtap, ete3, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util |
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GITHUB
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quay.io/biocontainers/ciso8601 |
shpc-registry automated BioContainers addition for ciso8601 |
2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5, wish8.5 |
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GITHUB
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quay.io/biocontainers/cistrome-ceas |
shpc-registry automated BioContainers addition for cistrome-ceas |
ChIPAssoc, build_genomeBG, ceas, ceasBW, gca, sitepro, siteproBW, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
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GITHUB
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quay.io/biocontainers/cistrome_beta |
shpc-registry automated BioContainers addition for cistrome_beta |
BETA, misp, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/cite-seq-count |
shpc-registry automated BioContainers addition for cite-seq-count |
CITE-seq-Count, umi_tools, get_objgraph, undill, xkbcli, py.test, pytest, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil |
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GITHUB
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quay.io/biocontainers/cityhash |
shpc-registry automated BioContainers addition for cityhash |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/civicpy |
singularity registry hpc automated addition for civicpy |
civicpy, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/cladebreaker |
singularity registry hpc automated addition for cladebreaker |
check_samplesheet.py, cladebreaker, list_fixer.py, nextflow, nextflow.bak, conda-env, cph, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd, df, dir, dircolors, dirname, du |
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GITHUB
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quay.io/biocontainers/cladeomatic |
singularity registry hpc automated addition for cladeomatic |
cladeomatic, corepack, gpustat, npx, py-spy, ray, virtualenv, node, npm, snp-sites, mpg123, mpg123-id3dump, mpg123-strip, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, libgcrypt-config, mpicalc, yat2m, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, attr, balsam, getfattr, lprodump |
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GITHUB
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quay.io/biocontainers/clair |
shpc-registry automated BioContainers addition for clair |
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GITHUB
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quay.io/biocontainers/clair3-illumina |
singularity registry hpc automated addition for clair3-illumina |
clair3.py, pypy, pypy3, pypy3.6, run_clair3.sh, whatshap, gdbm_dump, gdbm_load, gdbmtool, estimator_ckpt_converter, google-oauthlib-tool, igzip, tf_upgrade_v2, pbunzip2, pbzcat, pbzip2, tflite_convert, saved_model_cli, toco, toco_from_protos, pt2to3, ptdump, ptrepack, pttree, tensorboard, pigz, unpigz, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh |
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GITHUB
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quay.io/biocontainers/clair3-trio |
singularity registry hpc automated addition for clair3-trio |
clair3.py, pypy, pypy3, pypy3.6, run_clair3_trio.sh, whatshap, gdbm_dump, gdbm_load, gdbmtool, estimator_ckpt_converter, google-oauthlib-tool, igzip, tf_upgrade_v2, pbunzip2, pbzcat, pbzip2, tflite_convert, saved_model_cli, toco, toco_from_protos, vcf_sample_filter.py, pt2to3, ptdump, ptrepack, pttree, tensorboard, vcf_filter.py, vcf_melt, pigz, unpigz, env_parallel |
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GITHUB
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quay.io/biocontainers/clair3 |
shpc-registry automated BioContainers addition for clair3 |
clair3.py, pypy, pypy3, pypy3.6, run_clair3.sh, whatshap, gdbm_dump, gdbm_load, gdbmtool, estimator_ckpt_converter, google-oauthlib-tool, igzip, tf_upgrade_v2, pbunzip2, pbzcat, pbzip2 |
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GITHUB
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quay.io/biocontainers/clairvoyante |
shpc-registry automated BioContainers addition for clairvoyante |
clairvoyante.py, pypy, virtualenv-pypy, freeze_graph, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, markdown_py, protoc, f2py2, f2py2.7 |
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GITHUB
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quay.io/biocontainers/clame |
shpc-registry automated BioContainers addition for clame |
binning, clame, genFm9, mapping |
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GITHUB
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quay.io/biocontainers/clan |
shpc-registry automated BioContainers addition for clan |
clan_annotate, clan_index, clan_output, clan_search |
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GITHUB
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quay.io/biocontainers/clark |
shpc-registry automated BioContainers addition for clark |
CLARK, CLARK-S, CLARK-l, converter, dscriptMaker, exeSeq, extractSeqs, getAbundance, getAccssnTaxID, getConfidenceDensity, getGammaDensity, getTargetSpecificKmersStat, getTargetsDef, getfilesToTaxNodes, makeSummaryTables, tar |
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GITHUB
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quay.io/biocontainers/classpro |
singularity registry hpc automated addition for classpro |
ClassGS, ClassPro, class2acc, class2cns, prof2class |
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GITHUB
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quay.io/biocontainers/cleanifier |
singularity registry hpc automated addition for cleanifier |
cleanifier, idle3.13, pydoc3.13, python3.13, python3.13-config, numpy-config, py.test, pytest, numba, jsonschema, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, normalizer |
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GITHUB
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quay.io/biocontainers/clearcnv |
shpc-registry automated BioContainers addition for clearcnv |
clearCNV, dash-generate-components, renderer, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical, bam2bed_sge, bam2bed_sge-float128 |
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GITHUB
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quay.io/biocontainers/clearcut |
shpc-registry automated BioContainers addition for clearcut |
clearcut |
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GITHUB
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quay.io/biocontainers/clermontyping |
singularity registry hpc automated addition for clermontyping |
clermonTyping.sh, numpy-config, pandoc-lua, pandoc-server, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, seedtop, test_pcre, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, run_with_lock, pandoc, blast_formatter, blastdb_aliastool, blastdbcheck, blastdbcmd, blastn |
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GITHUB
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quay.io/biocontainers/clever-toolkit |
shpc-registry automated BioContainers addition for clever-toolkit |
add-score-tags-to-bam, bam-to-alignment-priors, bam2fastq, clever, clever-core, ctk-version, evaluate-sv-predictions, extract-bad-reads, filter-bam, filter-variations, genotyper, insert-length-histogram, laser, laser-core, laser-recalibrate, mateclever, mateclever-compute-rois, merge-putative-variations, merge-to-vcf, multiline-to-xa, plot-insert-size-distribution, postprocess-predictions, precompute-distributions, read-group-stats, remove-redundant-variations, split-priors-by-chromosome, split-reads, vcf-to-deletionlist, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, qhelpconverter, guess-ploidy.py |
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GITHUB
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quay.io/biocontainers/clinker-py |
shpc-registry automated BioContainers addition for clinker-py |
clinker, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, faidx, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10 |
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GITHUB
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quay.io/biocontainers/clinker |
shpc-registry automated BioContainers addition for clinker |
|
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GITHUB
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quay.io/biocontainers/clinod |
shpc-registry automated BioContainers addition for clinod |
analyze, batchman, bison, clinod, convert2snns, feedback-gennet, ff_bignet, flex, flex++, isnns, linknets, m4, mkhead, mkout, mkpat, netlearn, netperf, pat_sel, pat_sel_simple, snns, snns2c, snnsbat, td_bignet, xgui, yacc, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/clinvar-this |
singularity registry hpc automated addition for clinvar-this |
clinvar-this, tabulate, jsonschema, normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/clinvar-tsv |
shpc-registry automated BioContainers addition for clinvar-tsv |
clinvar_tsv, plac_runner.py, yte, docutils, pulptest, cbc, clp, snakemake, snakemake-bash-completion, tabulate, jupyter-trust |
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GITHUB
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quay.io/biocontainers/clipandmerge |
shpc-registry automated BioContainers addition for clipandmerge |
ClipAndMerge, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/clipcontext |
shpc-registry automated BioContainers addition for clipcontext |
clipcontext, twoBitToFa, twoBitInfo, markdown_py, my_print_defaults, mysql_config, perror, shiftBed, annotateBed, bamToBed, bamToFastq |
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GITHUB
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quay.io/biocontainers/clipkit |
shpc-registry automated BioContainers addition for clipkit |
clipkit, tqdm, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/clippy |
shpc-registry automated BioContainers addition for clippy |
clippy, dash-generate-components, renderer, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, flask, pybabel, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py |
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GITHUB
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quay.io/biocontainers/cliquesnv |
shpc-registry automated BioContainers addition for cliquesnv |
cliquesnv, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, 2to3-3.10 |
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GITHUB
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quay.io/biocontainers/cloci |
singularity registry hpc automated addition for cloci |
acc2fa, acc2gbk, acc2gff, acc2locus, add2gff, annotationStats, assemblyStats, bioreform, bsmp2info, cloci, cloci2enrich, cloci2stats, coords2fa, crap, db2files, db2hgs, db2microsyntree, db2search, extract_mtdb, fa2clus, fa2hmmer2fa, fa2mass, fa2tree, fna2faa, fsa2xml, gbf2info, gff2seq, gff2svg, gtk-builder-tool, gtk-encode-symbolic-svg, gtk-launch, gtk-query-immodules-3.0, gtk-query-settings, hg2hg_net, hlg2biofile, hlg2hlg_net, jgiDwnld, just-top-hits, manage_mtdb, mtdb, ncbiAcc2fa, ncbiDwnld, ome2name, predb2mtdb, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, s2subs, systematic-mutations, update_mtdb, wayland-scanner, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, iqtree2, aria2c, gawk-5.3.0, gawkbug, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank |
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GITHUB
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quay.io/biocontainers/clonalframeml |
shpc-registry automated BioContainers addition for clonalframeml |
ClonalFrameML |
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GITHUB
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quay.io/biocontainers/cloudspades |
singularity registry hpc automated addition for cloudspades |
idle3.13, pydoc3.13, python3.13, python3.13-config, coronaspades.py, metaplasmidspades.py, metaviralspades.py, rnaviralspades.py, spades-convert-bin-to-fasta, spades-gsimplifier, spades-kmer-estimating, spades-read-filter, spades-bwa, spades-core, spades-corrector-core, spades-gbuilder, spades-gmapper, spades-hammer, spades-ionhammer, spades-kmercount, metaspades.py, plasmidspades.py, rnaspades.py, spades.py, spades_init.py |
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GITHUB
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quay.io/biocontainers/clove |
shpc-registry automated BioContainers addition for clove |
clove, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/clsify |
shpc-registry automated BioContainers addition for clsify |
abi-dump.2.10.0, align-info.2.10.0, alignmentSieve, bam-load.2.10.0, bamCompare, bamCoverage, bamPEFragmentSize, bigWigToBedGraph, bigwigCompare, bioawk, bioconvert, bioconvert_init, bioconvert_sniffer, bioconvert_stats, cache-mgr.2.10.0, cg-load.2.10.0, clsify, computeGCBias, computeMatrix, computeMatrixOperations, correctGCBias, dash-generate-components, deeptools, dsrc, estimateReadFiltering, estimateScaleFactor, fasterq-dump-orig.2.10.0, fasterq-dump.2.10.0, fastq-dump-orig.2.10.0, fastq-dump.2.10.0, go, gofmt, illumina-dump.2.10.0, kar.2.10.0, kdbmeta.2.10.0, kget.2.10.0, latf-load.2.10.0, ldc-build-runtime, ldc-profdata, ldc-prune-cache, ldc2, ldmd2, mawk, multiBamSummary, multiBigwigSummary, plink, plotCorrelation, plotCoverage, plotEnrichment, plotFingerprint, plotHeatmap, plotPCA, plotProfile, prefetch-orig.2.10.0, prefetch.2.10.0, rcexplain.2.10.0, renderer, sam-dump-orig.2.10.0, sam-dump.2.10.0, sff-dump.2.10.0, squizz, sra-pileup-orig.2.10.0, sra-pileup.2.10.0, sra-sort.2.10.0, sra-stat.2.10.0, srapath-orig.2.10.0, srapath.2.10.0, sratools.2.10.0, test-sra.2.10.0, vdb-config.2.10.0, vdb-copy.2.10.0, vdb-decrypt.2.10.0, vdb-dump.2.10.0, vdb-encrypt.2.10.0, vdb-lock.2.10.0, vdb-passwd.2.10.0, vdb-unlock.2.10.0, vdb-validate.2.10.0, wiggletools, easydev_buildPackage, ibrowse, multigit, sambamba, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128 |
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GITHUB
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quay.io/biocontainers/clust |
shpc-registry automated BioContainers addition for clust |
clust, conv-template, from-template, qhelpconverter, pylupdate5, pyrcc5, pyuic5, sip, qdoc, gst-device-monitor-1.0, gst-discoverer-1.0 |
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GITHUB
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quay.io/biocontainers/clustalo |
shpc-registry automated BioContainers addition for clustalo |
clustalo |
|
GITHUB
|
quay.io/biocontainers/clustalw |
shpc-registry automated BioContainers addition for clustalw |
clustalw, clustalw2 |
|
GITHUB
|
quay.io/biocontainers/cluster-picker |
shpc-registry automated BioContainers addition for cluster-picker |
cluster-picker, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
|
quay.io/biocontainers/cluster_vcf_records |
shpc-registry automated BioContainers addition for cluster_vcf_records |
vt, tabix++, bc, dc, fastaq, abba-baba, bFst, bed2region, bgziptabix, dumpContigsFromHeader |
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GITHUB
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quay.io/biocontainers/clusterfunk |
singularity registry hpc automated addition for clusterfunk |
clusterfunk, dendropy-format, sumlabels.py, sumtrees.py, chardetect, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/clustergrammer |
shpc-registry automated BioContainers addition for clustergrammer |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/clusterone |
shpc-registry automated BioContainers addition for clusterone |
clusterone, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
|
quay.io/biocontainers/clusterpicker |
shpc-registry automated BioContainers addition for clusterpicker |
ClusterPicker, cluster-picker, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
|
quay.io/biocontainers/clusty |
singularity registry hpc automated addition for clusty |
clusty |
|
GITHUB
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quay.io/biocontainers/cmaple |
singularity registry hpc automated addition for cmaple |
cmaple, cmaple-aa |
|
GITHUB
|
quay.io/biocontainers/cmappy |
shpc-registry automated BioContainers addition for cmappy |
concat, gct2gctx, gctx2gct, subset, f2py3.6, normalizer, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
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quay.io/biocontainers/cmash |
shpc-registry automated BioContainers addition for cmash |
MakeDNADatabase.py, MakeNodeGraph.py, MakeStreamingDNADatabase.py, MakeStreamingPrefilter.py, QueryDNADatabase.py, StreamingQueryDNADatabase.py, StreamingQueryDNADatabase_queue.py, abundance-dist-single.py, abundance-dist.py, annotate-partitions.py, count-median.py, do-partition.py, extract-long-sequences.py, extract-paired-reads.py, extract-partitions.py, fastq-to-fasta.py, filter-abund-single.py, filter-abund.py, filter-stoptags.py, find-knots.py, interleave-reads.py, load-graph.py, load-into-counting.py, make-initial-stoptags.py, merge-partitions.py, normalize-by-median.py, partition-graph.py, readstats.py, sample-reads-randomly.py, split-paired-reads.py, trim-low-abund.py, unique-kmers.py, screed, f2py3.8, opj_compress, opj_decompress, opj_dump, h5clear, h5format_convert, h5watch, h5fc, gif2h5 |
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GITHUB
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quay.io/biocontainers/cmat |
singularity registry hpc automated addition for cmat |
VERSION, cmat, coveralls, jwebserver, nextflow.bak, nextflow, coverage, pcre2posix_test, basenc, b2sum, ls, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd, df |
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GITHUB
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quay.io/biocontainers/cmfinder |
shpc-registry automated BioContainers addition for cmfinder |
COPYRIGHT, RNAPhylo, ScoreMotif.pl, Stockholm.pm, _cmfinder.pl, align, canda, candf, cands, cmfinder, cmfinder.pl, cmfinder04, cmfinder04.pl, comb_motif.pl, compare_motif.pl, count_seq, diff_motif, fasta2col, filter.pl, findphyl, hmmpair, io.pl, merge_motif.pl, mltree, perl5.22.2, rank_cmfinder.pl, rm_dup.pl, select_cmfinder.pl, sreformat, summarize, summary_rank.pl, test_pcre, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, clustalw, c2ph, pstruct, seedtop, cluster |
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GITHUB
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quay.io/biocontainers/cmip |
shpc-registry automated BioContainers addition for cmip |
avgEpsGrid, canal, cmip, getPatch, grd2cube, surfnet2binaryGrid, titration, watden |
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GITHUB
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quay.io/biocontainers/cmph |
shpc-registry automated BioContainers addition for cmph |
cmph |
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GITHUB
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quay.io/biocontainers/cmsearch_tblout_deoverlap |
singularity registry hpc automated addition for cmsearch_tblout_deoverlap |
cmsearch-deoverlap.pl |
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GITHUB
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quay.io/biocontainers/cmseq |
shpc-registry automated BioContainers addition for cmseq |
breadth_depth.py, consensus.py, consensus_aDNA.py, poly.py, polymut.py, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
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GITHUB
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quay.io/biocontainers/cmsip |
shpc-registry automated BioContainers addition for cmsip |
LiBis, bamsort.sh, bbf, bseqc2, bseqc2mbiasplot.R, bsmap, cmsip, fetchChromSizes, mcall, mcomp, moabs, numCI, pefilter, preprocess_novoalign.sh, redepth.pl, routines.pm, template_for_cfg, template_for_qsub, trim_galore, cutadapt, fastqc, gawk-5.1.0, awk, gawk, pigz, unpigz, my_print_defaults, mysql_config, perror |
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GITHUB
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quay.io/biocontainers/cmv |
shpc-registry automated BioContainers addition for cmv |
CMCV, CMCWStoCMCV, CMCtoHMMC, CMV, CMVJson, HMMCV, HMMCtoCMC, HMMV |
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GITHUB
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quay.io/biocontainers/cnasim |
singularity registry hpc automated addition for cnasim |
cnasim, demes, dwgsim, dwgsim_eval, msp, mspms, tskit, annot-tsv, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, jsonschema, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl |
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GITHUB
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quay.io/biocontainers/cnmf |
singularity registry hpc automated addition for cnmf |
cnmf, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, h5tools_test_utils, scanpy, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, h5delete, numba |
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GITHUB
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quay.io/biocontainers/cnv-phenopacket |
singularity registry hpc automated addition for cnv-phenopacket |
cnv-phenopacket, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, jsonschema |
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GITHUB
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quay.io/biocontainers/cnv-vcf2json |
singularity registry hpc automated addition for cnv-vcf2json |
cnv-vcf2json, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, jsonschema |
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GITHUB
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quay.io/biocontainers/cnv_facets |
shpc-registry automated BioContainers addition for cnv_facets |
cnv_facets.R, snp-pileup, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, wget, ace2sam, blast2sam.pl |
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GITHUB
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quay.io/biocontainers/cnvetti |
shpc-registry automated BioContainers addition for cnvetti |
cnvetti |
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GITHUB
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quay.io/biocontainers/cnvkit |
shpc-registry automated BioContainers addition for cnvkit |
cnv_annotate.py, cnv_expression_correlate.py, cnv_updater.py, cnv_ztest.py, cnvkit.py, guess_baits.py, reference2targets.py, skg_convert.py, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, faidx, 2to3-3.5, idle3.5, pydoc3.5, python3.5 |
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GITHUB
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quay.io/biocontainers/cnvnator |
shpc-registry automated BioContainers addition for cnvnator |
afterimage-config, afterimage-libs, cconfig, cmsd, cnvnator, cnvnator2VCF.pl, davix-cp, davix-get, davix-http, davix-ls, davix-mkdir, davix-mv, davix-put, davix-rm, davix-tester, davix-unit-tests, frm_admin, frm_purged, frm_xfragent, frm_xfrd, genreflex, glewinfo, hadd, hist2workspace, mpxstats, plotbaf.py, plotcircular.py, plotrdbaf.py, prepareHistFactory, proofserv, proofserv.exe, pythia8-config, rmkdepend, root, root-config, root.exe, rootbrowse, rootcint, rootcling, rootcp, rootdrawtree, rooteventselector, rootls, rootmkdir, rootmv, rootn.exe, rootnb.exe, rootprint, rootrm, roots, roots.exe, rootslimtree, scitokens-create, scitokens-list-access, scitokens-test, scitokens-test-access, scitokens-verify, setxrd.csh, setxrd.sh, soapcpp2, thisroot.csh, thisroot.fish, thisroot.sh, visualinfo, wait41, wsdl2h, xpdtest, xrdacctest, xrdadler32, xrdcopy, xrdcp, xrdcrc32c, xrdfs, xrdgsiproxy, xrdgsitest, xrdmapc, xrdpfc_print, xrdpinls, xrdpwdadmin, xrdsssadmin, xrootd, xrootd-config, xxh128sum, xxh32sum, xxh64sum, xxhsum, fitscopy, fpack, funpack, imcopy, smem, cxpm |
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GITHUB
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quay.io/biocontainers/cnvpytor |
shpc-registry automated BioContainers addition for cnvpytor |
cnvpytor, vba_extract.py, mirror_server, mirror_server_stop, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, img2webp |
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GITHUB
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quay.io/biocontainers/coast |
shpc-registry automated BioContainers addition for coast |
coast, bokeh, tabulate, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns |
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GITHUB
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quay.io/biocontainers/coatran |
shpc-registry automated BioContainers addition for coatran |
coatran_constant, coatran_expgrowth, coatran_inftime, coatran_transtree |
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GITHUB
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quay.io/biocontainers/cobra-meta |
singularity registry hpc automated addition for cobra-meta |
cobra-meta, blastn_vdb, tblastn_vdb, uuid, uuid-config, test_pcre, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl, sort-table |
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GITHUB
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quay.io/biocontainers/cobra |
shpc-registry automated BioContainers addition for cobra |
glpsol, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, xslt-config |
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GITHUB
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quay.io/biocontainers/cobs |
shpc-registry automated BioContainers addition for cobs |
cobs, xxhsum |
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GITHUB
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quay.io/biocontainers/coconet-binning |
shpc-registry automated BioContainers addition for coconet-binning |
coconet, pybind11-config, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, igraph, doesitcache, iptest3, iptest, ipython3, ipython, cygdb |
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GITHUB
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quay.io/biocontainers/cocoscore |
shpc-registry automated BioContainers addition for cocoscore |
fasttext, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier |
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GITHUB
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quay.io/biocontainers/codan |
shpc-registry automated BioContainers addition for codan |
codan.py, fasta_to_tops, predict, tops-viterbi_decoding, bp_pairwise_kaks.pl, bp_search2BSML.pl, CA.pm, cacert.pem, index-themes, bp_aacomp.pl, bp_biofetch_genbank_proxy.pl, bp_bioflat_index.pl, bp_biogetseq.pl, bp_blast2tree.pl |
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GITHUB
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quay.io/biocontainers/codingorf |
shpc-registry automated BioContainers addition for codingorf |
codingorf, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/codingquarry |
shpc-registry automated BioContainers addition for codingquarry |
CodingQuarry, CufflinksGTF_to_CodingQuarryGFF3.py, run_CQ-PM_mine.sh, run_CQ-PM_stranded.sh, run_CQ-PM_unstranded.sh, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/codoff |
singularity registry hpc automated addition for codoff |
codoff, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/codonw |
shpc-registry automated BioContainers addition for codonw |
aau, base3s, bases, cbi, codonw, cu, cutab, cutot, dinuc, enc, fop, gc3s, raau, reader, rscu, tidy, transl, cai, gc |
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GITHUB
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quay.io/biocontainers/cofold |
shpc-registry automated BioContainers addition for cofold |
CoFold, RNAcofold, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex, RNAsnoop, Kinfold, RNALfold, RNAaliduplex, RNAalifold |
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GITHUB
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quay.io/biocontainers/cogclassifier |
singularity registry hpc automated addition for cogclassifier |
COGclassifier, plot_cog_classifier_barchart, plot_cog_classifier_piechart, jsonschema, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/cogent |
shpc-registry automated BioContainers addition for cogent |
mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, mpifort, mpic++, mpicc |
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GITHUB
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quay.io/biocontainers/cogent3 |
singularity registry hpc automated addition for cogent3 |
numba, pycc, tqdm, chardetect, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/cogtriangles |
singularity registry hpc automated addition for cogtriangles |
COGcognitor, COGlse, COGmakehash, COGreadblast, COGtriangles |
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GITHUB
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quay.io/biocontainers/coidb |
singularity registry hpc automated addition for coidb |
cluster_bold.py, coidb, f2py3.11, format_sintax.py, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, stone, seqkit, plac_runner.py, yte, funzip, unzipsfx, zipgrep, zipinfo, docutils, vsearch, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, unzip, cmark, pulptest |
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GITHUB
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quay.io/biocontainers/coils |
shpc-registry automated BioContainers addition for coils |
coils-svr.pl, coils-wrap.pl, ncoils |
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GITHUB
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quay.io/biocontainers/coinfinder |
shpc-registry automated BioContainers addition for coinfinder |
coinfinder, ffmpeg, ffprobe, h264dec, h264enc, lame, vpxdec, vpxenc, x264, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv, psktool |
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GITHUB
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quay.io/biocontainers/cojac |
shpc-registry automated BioContainers addition for cojac |
cooc-colourmut, cooc-curate, cooc-mutbamscan, cooc-pubmut, cooc-tabmut, phe2cojac, normalizer, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/colabfold |
singularity registry hpc automated addition for colabfold |
a3m_database_extract, a3m_database_filter, a3m_database_reduce, a3m_extract, a3m_reduce, colabfold_batch, colabfold_search, colabfold_split_msas, cstranslate, ffindex_apply, ffindex_build, ffindex_from_fasta, ffindex_from_fasta_with_split, ffindex_get, ffindex_modify, ffindex_order, ffindex_reduce, ffindex_unpack, flatc, gawk-5.2.2, gawkbug, hhalign, hhalign_omp, hhblits, hhblits_ca3m, hhblits_omp, hhconsensus, hhfilter, hhmake, hhsearch, hhsearch_omp, jlpm, jsonpointer, jupyter-events, jupyter-lab, jupyter-labextension, jupyter-labhub, jupyter-server, kalign, pdbfixer, pyjson5, qtpy, wsdump, jupyter-console, jupyter-qtconsole, aria2c, h5fuse.sh, jupyter-execute, jupyter-dejavu, send2trash, import_pb_to_tensorboard, mmseqs, jupyter-notebook, jupyter-nbconvert, pybabel, estimator_ckpt_converter, h5delete, jupyter-kernel, jupyter-kernelspec, jupyter-run, google-oauthlib-tool, tf_upgrade_v2, curve_keygen, tflite_convert, saved_model_cli, toco, toco_from_protos, awk |
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GITHUB
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quay.io/biocontainers/collect-columns |
shpc-registry automated BioContainers addition for collect-columns |
collect-columns, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, faidx, 2to3-3.8, idle3.8, pydoc3.8, python3.8 |
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GITHUB
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quay.io/biocontainers/collect_mgf |
shpc-registry automated BioContainers addition for collect_mgf |
collect_mgf |
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GITHUB
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quay.io/biocontainers/collectl |
shpc-registry automated BioContainers addition for collectl |
collectl, colmux, perl5.22.0, c2ph, pstruct, podselect |
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GITHUB
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quay.io/biocontainers/colombo |
shpc-registry automated BioContainers addition for colombo |
Colombo, SigiCRF, SigiHMM, mSigiHMM, jaotc, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs, pack200, rmic |
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GITHUB
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quay.io/biocontainers/colorbrewer |
shpc-registry automated BioContainers addition for colorbrewer |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/colord |
shpc-registry automated BioContainers addition for colord |
colord |
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GITHUB
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quay.io/biocontainers/colorid_bv |
singularity registry hpc automated addition for colorid_bv |
colorid_bv |
|
GITHUB
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quay.io/biocontainers/colormap |
shpc-registry automated BioContainers addition for colormap |
easydev_buildPackage, ibrowse, multigit, browse, easy_install-3.6, qhelpconverter, pylupdate5, pyrcc5, pyuic5, sip |
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GITHUB
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quay.io/biocontainers/combined-pvalues |
shpc-registry automated BioContainers addition for combined-pvalues |
comb-p, toolshed, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/comebin |
singularity registry hpc automated addition for comebin |
run_comebin.sh, checkm, FragGeneScan, hmmc2, hmmerfm-exactmatch, run_FragGeneScan.pl, rppr, guppy, pplacer, torchrun, ninja, igraph, scanpy, convert-caffe2-to-onnx, convert-onnx-to-caffe2, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch |
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GITHUB
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quay.io/biocontainers/commec |
singularity registry hpc automated addition for commec |
commec, bsmp2info, fsa2xml, gbf2info, just-top-hits, systematic-mutations, taxonkit, xmlget, xmltext, aaindexextract, abiview, acdgalaxy, acdlog, acdpretty, acdtable, acdtrace, acdvalid, aligncopy, aligncopypair, antigenic, assemblyget, backtranambig, backtranseq, banana, biosed, btwisted |
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GITHUB
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quay.io/biocontainers/commet |
shpc-registry automated BioContainers addition for commet |
Commet.py, bvop, compare_reads, dendro.R, extract_reads, filter_reads, heatmap.r, index_and_search, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/compalignp |
shpc-registry automated BioContainers addition for compalignp |
afetch, alistat, compalign, compalignp, compstruct, revcomp, seqsplit, seqstat, sfetch, shuffle, sindex, sreformat, translate, weight |
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GITHUB
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quay.io/biocontainers/comparative-annotation-toolkit |
shpc-registry automated BioContainers addition for comparative-annotation-toolkit |
SplicedAlignment.pm, _toil_mesos_executor, _toil_worker, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, autoRun.pathInfo, axtChain, bam2wig, bamToPsl, bamtools-2.4.1, bedSort, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, cegma2gff.pl, chainMergeSort, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, clusterGenes, createAugustusJoblist.pl, cwltest, cwltoil, del_from_prfl.pl, espoca, evalCGP.pl, eval_dualdecomp.pl, exonerate2hints.pl, exoniphyDb2hints.pl, extractTranscriptEnds.pl, filter-ppx.pl, filterGenes.pl, filterGenesIn_mRNAname.pl, filterGenesIn_mRNAname.pl.patch, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, galaxy-tool-test, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, genePredToBed, genePredToFakePsl, genePredToGtf, getAnnoFasta.pl, getSeq, gff2gbSmallDNA.pl, gff2ps_mycustom, gff3ToGenePred, gffGetmRNA.pl, gp2othergp.pl, gtf2gff.pl, gtf2gff.pl.origexit, gtfToGenePred, hal2maf_split.pl, helpMod.pm, intron2exex.pl, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, load2sqlitedb, lp_solve, luigi, luigi-deps, luigi-deps-tree, luigi-grep, luigid, maf2conswig.pl, makeMatchLists.pl, makeUtrTrainingSet.pl, maskNregions.pl, mock-cwl-runner, moveParameters.pl, msa2prfl.pl, mulled-build, mulled-build-channel, mulled-build-files, mulled-build-tool, mulled-search, new_species.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, peptides2alternatives.pl, peptides2hints.pl, phastconsDB2hints.pl, polyA2hints.pl, prints2prfl.pl, pslCDnaFilter, pslCheck, pslMap, pslMap.pl, pslMapPostChain, pslPosTarget, pslRecalcMatch, pslToBigPsl, pyfasta, randomSplit.pl, ratewig.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, samMap.pl, scipiogff2gff.pl, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, splitMfasta.pl, split_wiggle.pl, summarizeACGTcontent.pl, toil, toil-cwl-runner, toil-wdl-runner, transMap2hints.pl, transMapPslToGenePred, uniquePeptides.pl, utrgff2gbrowse.pl, webserver-results.body, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, wsdump.py, yaml2gff.1.4.pl, augustus, bam2hints, cwltool, etraining, fastBlockSearch, filterBam, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign |
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GITHUB
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quay.io/biocontainers/compare-reads |
shpc-registry automated BioContainers addition for compare-reads |
guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, python2-config, python2.7-config, python2 |
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GITHUB
|
quay.io/biocontainers/comparem |
shpc-registry automated BioContainers addition for comparem |
comparem, diamond, prodigal, futurize, pasteurize, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
|
quay.io/biocontainers/comparem2 |
singularity registry hpc automated addition for comparem2 |
archspec, asscom2, bsdunzip, comparem2, distro, jsondiff, jsonpatch, numpy-config, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex, rst2xml, jsonpointer, mamba-package, conda2solv, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, conda-env, cph, bsdcat, bsdcpio, bsdtar, yte, plac_runner.py, docutils, pulptest, cbc, clp, snakemake-bash-completion, humanfriendly, snakemake, tabulate, jupyter-trust |
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GITHUB
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quay.io/biocontainers/compleasm |
singularity registry hpc automated addition for compleasm |
compleasm, hb-info, jwebserver, miniprot, run-sepp.sh, run_sepp.py, run_upp.py, seppJsonMerger.jar, split_sequences.py, hmmc2, hmmerfm-exactmatch, guppy, pplacer, dendropy-format, tjbench, sumlabels.py, sumtrees.py, jpackage, cups-config, ippeveprinter, ipptool, alimask, hmmconvert, hmmemit, hmmfetch, hmmlogo, hmmpgmd, hmmpress, hmmscan, hmmsearch, hmmsim, hmmstat, jackhmmer, makehmmerdb |
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GITHUB
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quay.io/biocontainers/comut |
shpc-registry automated BioContainers addition for comut |
f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc |
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GITHUB
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quay.io/biocontainers/concoct |
shpc-registry automated BioContainers addition for concoct |
concoct, concoct_coverage_table.py, concoct_refine, cut_up_fasta.py, extract_fasta_bins.py, merge_cutup_clustering.py, nosetests-3.9, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info |
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GITHUB
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quay.io/biocontainers/concoord |
singularity registry hpc automated addition for concoord |
dist, dist.exe, disco |
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GITHUB
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quay.io/biocontainers/condiga |
singularity registry hpc automated addition for condiga |
condiga, taxonkit, vba_extract.py, convert, f2py3.11, sdust, k8, paftools.js, minimap2, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tqdm, python3.1 |
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GITHUB
|
quay.io/biocontainers/conduit-assembler |
shpc-registry automated BioContainers addition for conduit-assembler |
conduit, conduitUtils, perl5.32.0, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s |
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GITHUB
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quay.io/biocontainers/confindr |
shpc-registry automated BioContainers addition for confindr |
confindr, confindr.py, confindr_create_db, confindr_database_setup, kma, kma_index, kma_shm, kma_update, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, sketchblacklist2.sh, splitribo.sh, addssu.sh |
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GITHUB
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quay.io/biocontainers/conifer |
singularity registry hpc automated addition for conifer |
conifer, is_a_parent_of_b, show_ancestors, taxid_name |
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GITHUB
|
quay.io/biocontainers/conipher |
singularity registry hpc automated addition for conipher |
git2, hb-info, f2py3.11, tjbench, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, pandoc, python3.1 |
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GITHUB
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quay.io/biocontainers/connectome-workbench |
shpc-registry automated BioContainers addition for connectome-workbench |
|
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GITHUB
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quay.io/biocontainers/connor |
shpc-registry automated BioContainers addition for connor |
connor, cygdb, cython, cythonize, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl |
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GITHUB
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quay.io/biocontainers/consan |
shpc-registry automated BioContainers addition for consan |
bstats, comppair, conus_compare, conus_train, pModel, scompare, sfold, strain_ml |
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GITHUB
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quay.io/biocontainers/consel |
shpc-registry automated BioContainers addition for consel |
catass, catci, catmt, catpv, catrep, consel, makerep, makermt, randrep, seqmt, treeass |
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GITHUB
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quay.io/biocontainers/consensify |
singularity registry hpc automated addition for consensify |
consensify_c |
|
GITHUB
|
quay.io/biocontainers/consensusfixer |
shpc-registry automated BioContainers addition for consensusfixer |
ConsensusFixer, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/consent |
shpc-registry automated BioContainers addition for consent |
CONSENT-correct, CONSENT-correction, CONSENT-explode, CONSENT-merge, CONSENT-polish, CONSENT-polishing, CONSENT-reformatPAF, sdust, paftools.js, minimap2, k8 |
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GITHUB
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quay.io/biocontainers/consplice |
singularity registry hpc automated addition for consplice |
consplice, gsort, cyvcf2, gff2gff.py, coloredlogs, humanfriendly, tabulate, natsort, faidx, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, f2py3.8, htsfile, bgzip, tabix, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/constava |
singularity registry hpc automated addition for constava |
constava, gsd, mrcfile-header, mrcfile-validate, nc3tonc4, nc4tonc3, ncinfo, h5tools_test_utils, h5fuse.sh, h5delete, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff, hdp |
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GITHUB
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quay.io/biocontainers/constax |
shpc-registry automated BioContainers addition for constax |
AbundanceStats, AlignmentTools, Clustering, FrameBot, KmerFilter, ProbeMatch, ReadSeq, SeqFilters, SequenceMatch, classifier, constax, constax_no_inputs.sh, hmmgs, vsearch, CA.pm, cacert.pem, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras, pm-collect |
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GITHUB
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quay.io/biocontainers/constellations |
shpc-registry automated BioContainers addition for constellations |
constellations, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/contammix |
shpc-registry automated BioContainers addition for contammix |
contammix, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa |
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GITHUB
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quay.io/biocontainers/contatester |
singularity registry hpc automated addition for contatester |
calculAllelicBalance.sh, checkContaminant.sh, contaReport.R, contatester, depth_estim_from_vcf.sh, recupConta.sh, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun, shmemcc, shmemfort, shmemrun, flask, gff2gff.py, aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info, opal_wrapper, orte-clean, orte-info, orte-server |
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GITHUB
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quay.io/biocontainers/conterminator |
shpc-registry automated BioContainers addition for conterminator |
conterminator, gawk-5.1.0, awk, gawk |
|
GITHUB
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quay.io/biocontainers/contignet |
singularity registry hpc automated addition for contignet |
ContigNet, mpg123, mpg123-id3dump, mpg123-strip, orc-bugreport, orcc, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, libgcrypt-config, mpicalc, yat2m, torchrun, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, attr, balsam, getfattr, jackd |
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GITHUB
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quay.io/biocontainers/contigtax |
shpc-registry automated BioContainers addition for contigtax |
contigtax, evaluate_contigtax.py, ete3, compile-et.pl, prerr.properties, diamond, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config |
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GITHUB
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quay.io/biocontainers/contrafold |
shpc-registry automated BioContainers addition for contrafold |
contrafold, score_prediction, perl5.32.1, streamzip |
|
GITHUB
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quay.io/biocontainers/control-freec |
shpc-registry automated BioContainers addition for control-freec |
_makeGraph_Chromosome.R, assess_significance.R, freec, freec2bed.pl, freec2circos.pl, get_fasta_lengths.pl, makeGraph.R, makeGraph.R~, makeGraph_Chromosome.R, vcf2snpFreec.pl, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa |
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GITHUB
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quay.io/biocontainers/conus |
shpc-registry automated BioContainers addition for conus |
ambtest, conus_compare, conus_fold, conus_train, findopt, pocheck, reorder, scheck, stk2ct, weedamb |
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GITHUB
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quay.io/biocontainers/convert_zero_one_based |
shpc-registry automated BioContainers addition for convert_zero_one_based |
convert_zero_one_based, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/coolbox |
shpc-registry automated BioContainers addition for coolbox |
coolbox, jupyter-console, jupyter-qtconsole, jupyter-server, voila, wsdump.py, cooler, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix |
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GITHUB
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quay.io/biocontainers/cooler |
shpc-registry automated BioContainers addition for cooler |
cooler, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix, pairs_merger |
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GITHUB
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quay.io/biocontainers/coolpuppy |
singularity registry hpc automated addition for coolpuppy |
aomdec, aomenc, coolpup.py, cooltools, dask, dav1d, dividepups.py, m2r2, plotpup.py, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, aec, cooler, imageio_download_bin, imageio_remove_bin, skivi, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix, pairs_merger |
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GITHUB
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quay.io/biocontainers/cooltools |
shpc-registry automated BioContainers addition for cooltools |
cooltools, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng |
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GITHUB
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quay.io/biocontainers/copernicusmarine |
singularity registry hpc automated addition for copernicusmarine |
cachier, copernicusmarine, h5fuse, nc3tonc4, nc4tonc3, ncinfo, pysemver, watchmedo, dask, zipcmp, zipmerge, ziptool, jp.py, h5delete, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff, hdp |
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GITHUB
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quay.io/biocontainers/coprarna |
shpc-registry automated BioContainers addition for coprarna |
CopraRNA2.pl, IntaRNA, IntaRNA_1ui.pl, IntaRNA_up_1ui.pl, RNAmultifold, _fclique, _fconsense, _fcontml, _fcontrast, _fdiscboot, _fdnacomp, _fdnadist, _fdnainvar, _fdnaml, _fdnamlk, _fdnamove, _fdnapars, _fdnapenny, _fdollop, _fdolmove, _fdolpenny, _fdrawgram, _fdrawtree, _ffactor, _ffitch, _ffreqboot, _fgendist, _fkitsch, _fmix, _fmove, _fneighbor, _fpars, _fpenny, _fproml, _fpromlk, _fprotdist, _fprotpars, _frestboot, _frestdist, _frestml, _fretree, _fseqboot, _fseqbootall, _ftreedist, _ftreedistpair, addtit.pl, blast2homfile.pl, bp_einfo, bp_genbank_ref_extractor, cmpr.pl, convgraph.pl, domclust, fasta2genefile.pl, fclique, fconsense, fcontml, fcontrast, fdiscboot, fdnacomp, fdnadist, fdnainvar, fdnaml, fdnamlk, fdnamove, fdnapars, fdnapenny, fdollop, fdolmove, fdolpenny, fdrawgram, fdrawtree, ffactor, ffitch, ffreqboot, fgendist, fkitsch, fmix, fmove, fneighbor, fpars, fpenny, fproml, fpromlk, fprotdist, fprotpars, frestboot, frestdist, frestml, fretree, fseqboot, fseqbootall, ftreedist, ftreedistpair, phantomjs, clustalo, _bdftogd, _gd2copypal, _gd2togif, _gd2topng, _gdcmpgif, _gdparttopng, _gdtopng, _giftogd2, _pngtogd |
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GITHUB
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quay.io/biocontainers/coptr |
singularity registry hpc automated addition for coptr |
coptr, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fonttools, pyftmerge, pyftsubset, ttx |
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GITHUB
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quay.io/biocontainers/coral |
shpc-registry automated BioContainers addition for coral |
coral, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/core-snp-filter |
singularity registry hpc automated addition for core-snp-filter |
coresnpfilter, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/corekaburra |
singularity registry hpc automated addition for corekaburra |
Corekaburra, gffutils-cli, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, activate-global-python-argcomplete, fonttools, pyftmerge, pyftsubset, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc |
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GITHUB
|
quay.io/biocontainers/coreutils |
shpc-registry automated BioContainers addition for coreutils |
basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
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GITHUB
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quay.io/biocontainers/corgi |
singularity registry hpc automated addition for corgi |
alembic, celery, configure_accelerate, cookiecutter, corgi, corgi-train, databricks, dbfs, gunicorn, mlflow, optuna, pathy, pyaml, pybtex, pybtex-convert, pybtex-format, shortuuid, slugify, spacy, sqlformat, termgraph, torchapp, torchapp-imageclassifier, wandb, wb, weasel, wsdump, httpx, pbr, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, isympy, torchrun, elasticurl, elasticurl_cpp, elastipubsub, plasma-store-server, plasma_store, mako-render, csv-import, markdown-it, orc-memory, orc-scan, timezone-dump, convert-caffe2-to-onnx, convert-onnx-to-caffe2, orc-contents, orc-metadata, orc-statistics, sha256_profile, h5delete, gflags_completions.sh |
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GITHUB
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quay.io/biocontainers/corneto |
singularity registry hpc automated addition for corneto |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/corona_lineage_dynamics |
singularity registry hpc automated addition for corona_lineage_dynamics |
corona_lineage_dynamics, ta-lib-config, git2, pandoc-lua, pandoc-server, x86_64-conda-linux-gnu.cfg, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, pandoc, hb-info, tjbench |
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GITHUB
|
quay.io/biocontainers/correlationplus |
shpc-registry automated BioContainers addition for correlationplus |
correlationplus, evol, gsd, nc3tonc4, nc4tonc3, ncinfo, prody, numba, pycc, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy |
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GITHUB
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quay.io/biocontainers/corset |
shpc-registry automated BioContainers addition for corset |
corset, corset_fasta_ID_changer |
|
GITHUB
|
quay.io/biocontainers/corsid |
shpc-registry automated BioContainers addition for corsid |
corsid, corsid_a, xgboost, tqdm, chardetect, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/cortex_con |
shpc-registry automated BioContainers addition for cortex_con |
cortex_con_31 |
|
GITHUB
|
quay.io/biocontainers/cortexpy |
shpc-registry automated BioContainers addition for cortexpy |
cortexpy, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
|
quay.io/biocontainers/cosg |
singularity registry hpc automated addition for cosg |
h5tools_test_utils, h5fuse.sh, scanpy, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, h5delete, numba, natsort, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tqdm |
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GITHUB
|
quay.io/biocontainers/cosi2 |
shpc-registry automated BioContainers addition for cosi2 |
coalescent, get_recomap, recomap_hapmap2, recosimulate, sample_stats_extra, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/cosigt |
singularity registry hpc automated addition for cosigt |
cosigt |
|
GITHUB
|
quay.io/biocontainers/cospar |
singularity registry hpc automated addition for cospar |
bioservices, gseapy, h5fuse.sh, browse, mpg123, mpg123-id3dump, mpg123-strip, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, libgcrypt-config, mpicalc, yat2m, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, attr, balsam, getfattr, lprodump, lrelease-pro, lupdate-pro |
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GITHUB
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quay.io/biocontainers/count_constant_sites |
shpc-registry automated BioContainers addition for count_constant_sites |
count_constant_sites |
|
GITHUB
|
quay.io/biocontainers/counterr |
shpc-registry automated BioContainers addition for counterr |
counterr, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, jpgicc |
|
GITHUB
|
quay.io/biocontainers/cov-lineages |
shpc-registry automated BioContainers addition for cov-lineages |
lineages, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/coverageanomalyscanner |
singularity registry hpc automated addition for coverageanomalyscanner |
cas |
|
GITHUB
|
quay.io/biocontainers/coverm |
shpc-registry automated BioContainers addition for coverm |
coverm, dashing, remove_minimap2_duplicated_headers, starcode, fastANI, sdust, paftools.js, minimap2, k8, qualfa2fq.pl, xa2multi.pl, bwa, fasta-sanitize.pl, plot-ampliconstats |
|
GITHUB
|
quay.io/biocontainers/covid-spike-classification |
shpc-registry automated BioContainers addition for covid-spike-classification |
covid-spike-classification, tracy, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, fasta-sanitize.pl |
|
GITHUB
|
quay.io/biocontainers/covsonar |
singularity registry hpc automated addition for covsonar |
mpire-dashboard, sonar, xmlget, xmltext, aaindexextract, abiview, acdc, acdgalaxy, acdlog, acdpretty, acdtable, acdtrace, acdvalid, aligncopy, aligncopypair, antigenic, assemblyget, backtranambig, backtranseq, banana, biosed, btwisted, cachedas, cachedbfetch, cacheebeyesearch, cacheensembl, chaos |
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GITHUB
|
quay.io/biocontainers/covtobed |
shpc-registry automated BioContainers addition for covtobed |
covtobed, bamtools |
|
GITHUB
|
quay.io/biocontainers/cpat |
shpc-registry automated BioContainers addition for cpat |
cpat.py, make_hexamer_tab.py, make_logitModel.py, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
|
GITHUB
|
quay.io/biocontainers/cpc2 |
singularity registry hpc automated addition for cpc2 |
CPC2.py, compress.py, seqio.py, svm-predict, svm-scale, svm-train, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/cpgeneprofiler |
shpc-registry automated BioContainers addition for cpgeneprofiler |
pdfsig, pdfattach, pdfdetach, pdffonts, pdfimages, pdfinfo, pdfseparate, pdftocairo, pdftohtml, pdftoppm |
|
GITHUB
|
quay.io/biocontainers/cpinsim |
shpc-registry automated BioContainers addition for cpinsim |
cpinsim, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/cpstools |
singularity registry hpc automated addition for cpstools |
cpstools, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/cpt_gffparser |
shpc-registry automated BioContainers addition for cpt_gffparser |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/cptac |
shpc-registry automated BioContainers addition for cptac |
runxlrd.py, flask, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/crabs |
singularity registry hpc automated addition for crabs |
crabs, cutadapt, vsearch, igzip, muscle, pbunzip2, pbzcat, pbzip2, pigz, unpigz, f2py3.6, idn2, tqdm, wget, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, opj_compress, opj_decompress, opj_dump, jpgicc |
|
GITHUB
|
quay.io/biocontainers/crabz |
singularity registry hpc automated addition for crabz |
crabz |
|
GITHUB
|
quay.io/biocontainers/cramino |
singularity registry hpc automated addition for cramino |
cramino |
|
GITHUB
|
quay.io/biocontainers/cramtools |
shpc-registry automated BioContainers addition for cramtools |
cramtools, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/craq |
singularity registry hpc automated addition for craq |
craq, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, sdust, k8, paftools.js, minimap2, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/crass |
shpc-registry automated BioContainers addition for crass |
crass, crass-assembler, crisprtools, CreateDOMDocument, DOMCount, DOMPrint, EnumVal, MemParse, PParse, PSVIWriter, Redirect, SAX2Count, SAX2Print |
|
GITHUB
|
quay.io/biocontainers/crb-blast |
shpc-registry automated BioContainers addition for crb-blast |
bioruby, br_biofetch.rb, br_bioflat.rb, br_biogetseq.rb, br_pmfetch.rb, bundle, bundler, crb-blast, gdbm_dump, gdbm_load, gdbmtool, build.sh, common.go, rchive.go, setup-deps.log, setup.sh, xtract.go, erb |
|
GITHUB
|
quay.io/biocontainers/crimson |
shpc-registry automated BioContainers addition for crimson |
crimson, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/crispector |
shpc-registry automated BioContainers addition for crispector |
crispector, fastp, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7 |
|
GITHUB
|
quay.io/biocontainers/crispector2 |
singularity registry hpc automated addition for crispector2 |
crispector, fastp, igzip, f2py3.7, tqdm, fonttools, pyftmerge, pyftsubset, ttx, brotli, 2to3-3.7, idle3.7, pydoc3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, python3.7, opj_compress, opj_decompress, opj_dump, pyvenv, jpgicc, linkicc, psicc, tificc |
|
GITHUB
|
quay.io/biocontainers/crisper_recognition_tool |
shpc-registry automated BioContainers addition for crisper_recognition_tool |
crt, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/crisprbact |
shpc-registry automated BioContainers addition for crisprbact |
crisprbact, keyring, pkginfo, poetry, doesitcache, jsonschema, dbus-cleanup-sockets, dbus-daemon, dbus-launch, dbus-monitor, dbus-run-session, dbus-send, dbus-test-tool, dbus-update-activation-environment |
|
GITHUB
|
quay.io/biocontainers/crispresso |
shpc-registry automated BioContainers addition for crispresso |
|
|
GITHUB
|
quay.io/biocontainers/crispresso2 |
shpc-registry automated BioContainers addition for crispresso2 |
CRISPResso, CRISPRessoAggregate, CRISPRessoBatch, CRISPRessoCompare, CRISPRessoPooled, CRISPRessoPooledWGSCompare, CRISPRessoWGS, flash, trimmomatic, cups-config, ippeveprinter, ipptool, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l |
|
GITHUB
|
quay.io/biocontainers/crispritz |
shpc-registry automated BioContainers addition for crispritz |
crispritz.py, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical, bam2bed_sge, bam2bed_sge-float128 |
|
GITHUB
|
quay.io/biocontainers/crisprlungo |
singularity registry hpc automated addition for crisprlungo |
CRISPResso, CRISPRessoAggregate, CRISPRessoBatch, CRISPRessoCompare, CRISPRessoPooled, CRISPRessoPooledWGSCompare, CRISPRessoWGS, CRISPRlungo, CRISPRlungoBatch, CRISPRlungoCompare, c-index-test, cas-offinder, ccmake, clang, clang++, clang-8, clang-check, clang-cl, clang-cpp, clang-extdef-mapping, clang-format, clang-import-test, clang-offload-bundler, clang-refactor, clang-rename, cmake, cpack, ctest, diagtool, ed2k-link, edonr256-hash, edonr512-hash, git-clang-format, gost12-256-hash, gost12-512-hash, has160-hash, hmaptool, magnet-link, poclcc, rhash, scan-build, scan-view, sfv-hash, tiger-hash, tth-hash, whirlpool-hash, flash, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, tjbench, cutadapt, trimmomatic, igzip, pbunzip2, pbzcat, pbzip2, jpackage, pigz, unpigz |
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GITHUB
|
quay.io/biocontainers/crisprme |
shpc-registry automated BioContainers addition for crisprme |
crispritz.py, crisprme.py, dash-generate-components, gunicorn, renderer, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical, bam2bed_sge, bam2bed_sge-float128 |
|
GITHUB
|
quay.io/biocontainers/crnsimulator |
shpc-registry automated BioContainers addition for crnsimulator |
crnsimulator, isympy, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc |
|
GITHUB
|
quay.io/biocontainers/crocodeel |
singularity registry hpc automated addition for crocodeel |
crocodeel, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tqdm, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/cromshell |
shpc-registry automated BioContainers addition for cromshell |
cromshell, jq, onig-config, womtool, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/cromwell-tools |
shpc-registry automated BioContainers addition for cromwell-tools |
cromwell-tools, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, chardetect, 2to3-3.8, idle3.8, pydoc3.8 |
|
GITHUB
|
quay.io/biocontainers/cromwell |
shpc-registry automated BioContainers addition for cromwell |
|
|
GITHUB
|
quay.io/biocontainers/croo |
shpc-registry automated BioContainers addition for croo |
autouri, aws, aws.cmd, aws_bash_completer, aws_completer, aws_zsh_completer.sh, caper, create_instance.sh, croo, miniwdl, pygtail, pyhocon, run_mysql_server_docker.sh, run_mysql_server_singularity.sh, wsdump.py, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, coloredlogs, humanfriendly, xkbcli, jp.py, py.test, pytest |
|
GITHUB
|
quay.io/biocontainers/crossmap |
shpc-registry automated BioContainers addition for crossmap |
CrossMap.py, wigToBigWig, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py |
|
GITHUB
|
quay.io/biocontainers/crumble |
shpc-registry automated BioContainers addition for crumble |
crumble, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/crussmap |
singularity registry hpc automated addition for crussmap |
crussmap |
|
GITHUB
|
quay.io/biocontainers/crux-toolkit |
shpc-registry automated BioContainers addition for crux-toolkit |
crux |
|
GITHUB
|
quay.io/biocontainers/cryfa |
shpc-registry automated BioContainers addition for cryfa |
cryfa, keygen |
|
GITHUB
|
quay.io/biocontainers/cryptkeeper |
singularity registry hpc automated addition for cryptkeeper |
cryptkeeper, ostir, promoter-calculator, rhotermpredict, RNAmultifold, numpy-config, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex, RNAsnoop, RNAfold, Kinfold, RNALfold, RNAaliduplex, RNAalifold, RNAcofold, RNAdistance, RNAduplex |
|
GITHUB
|
quay.io/biocontainers/crypto_typer |
shpc-registry automated BioContainers addition for crypto_typer |
crypto_typer, blast_report, blastdb_convert, blastdb_path, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2 |
|
GITHUB
|
quay.io/biocontainers/cryptogenotyper |
shpc-registry automated BioContainers addition for cryptogenotyper |
cryptogenotyper, clustalw, CA.pm, cacert.pem, clustalw2, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras |
|
GITHUB
|
quay.io/biocontainers/csb |
shpc-registry automated BioContainers addition for csb |
csb-bfit, csb-bfite, csb-buildhmm, csb-csfrag, csb-embd, csb-hhfrag, csb-hhsearch, csb-precision, csb-promix, csb-test, qhelpconverter, pylupdate5, pyrcc5, pyuic5, sip, qdoc, gst-device-monitor-1.0, gst-discoverer-1.0, gst-play-1.0, fixqt4headers.pl |
|
GITHUB
|
quay.io/biocontainers/csblast |
shpc-registry automated BioContainers addition for csblast |
csblast, csbuild |
|
GITHUB
|
quay.io/biocontainers/cstag-cli |
singularity registry hpc automated addition for cstag-cli |
cstag, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/cstag |
singularity registry hpc automated addition for cstag |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/csvtk |
shpc-registry automated BioContainers addition for csvtk |
csvtk |
|
GITHUB
|
quay.io/biocontainers/ctat-lncrna |
shpc-registry automated BioContainers addition for ctat-lncrna |
alignTranscripts1.0, lastz, lastz_D, license.txt, liftOver, lncrna, makeWebsite, slncky, slncky.v1.0, my_print_defaults, mysql_config, perror, conda_build.sh, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv |
|
GITHUB
|
quay.io/biocontainers/ctat-metagenomics |
shpc-registry automated BioContainers addition for ctat-metagenomics |
centrifuge, centrifuge-BuildSharedSequence.pl, centrifuge-RemoveEmptySequence.pl, centrifuge-RemoveN.pl, centrifuge-build, centrifuge-build-bin, centrifuge-class, centrifuge-compress.pl, centrifuge-download, centrifuge-inspect, centrifuge-inspect-bin, centrifuge-kreport, centrifuge-sort-nt.pl, centrifuge_evaluate.py, centrifuge_simulate_reads.py, metagenomics, tar, CA.pm, cacert.pem, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras, pm-collect |
|
GITHUB
|
quay.io/biocontainers/ctat-mutations |
shpc-registry automated BioContainers addition for ctat-mutations |
ctat_mutations, gatk, STAR, STARlong, picard, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii |
|
GITHUB
|
quay.io/biocontainers/ctc-scite |
singularity registry hpc automated addition for ctc-scite |
CTC-SCITE |
|
GITHUB
|
quay.io/biocontainers/cthreepo |
shpc-registry automated BioContainers addition for cthreepo |
cthreepo, chardetect, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/ctseq |
shpc-registry automated BioContainers addition for ctseq |
Bismark_alignment_modes.pdf, NOMe_filtering, _config.yml, bam2nuc, bismark, bismark2bedGraph, bismark2report, bismark2summary, bismark_genome_preparation, bismark_methylation_extractor, compare_HLA.py, compare_HLA.py.bak, compare_HLA_Omixon.py, compare_HLA_Omixon.py.bak, copy_bismark_files_for_release.pl, coverage2cytosine, ctseq, deduplicate_bismark, extract_Omixon_HLA.py, extract_Omixon_HLA.py.bak, extract_exons.py, extract_splice_sites.py, filter_non_conversion, hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, hisatgenotype.py, hisatgenotype_HLA_genotyping_PGs.py, hisatgenotype_HLA_genotyping_PGs.py.bak, hisatgenotype_build_genome.py, hisatgenotype_convert_codis.py, hisatgenotype_convert_codis.py.bak, hisatgenotype_extract_codis_data.py, hisatgenotype_extract_codis_data.py.bak, hisatgenotype_extract_cyp_data.py, hisatgenotype_extract_cyp_data.py.bak, hisatgenotype_extract_reads.py, hisatgenotype_extract_vars.py, hisatgenotype_hla_cyp.py, hisatgenotype_locus.py, hisatgenotype_locus_samples.py, hisatgenotype_locus_samples.py.bak, license.txt, methylation_consistency, run_extract_CP.sh, run_extract_ILMN.sh, run_genotype_build.sh, run_hisat2_build.sh, run_type_CP.sh, test_data.fastq, umi_tools, metadata_conda_debug.yaml, cutadapt, pigz, unpigz, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s |
|
GITHUB
|
quay.io/biocontainers/ctxcore |
singularity registry hpc automated addition for ctxcore |
protoc-25.3.0, numpy-config, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, gflags_completions.sh, numba, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin |
|
GITHUB
|
quay.io/biocontainers/ctyper |
singularity registry hpc automated addition for ctyper |
ctyper, annot-tsv, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/cufflinks |
shpc-registry automated BioContainers addition for cufflinks |
cuffcompare, cuffdiff, cufflinks, cuffmerge, cuffnorm, cuffquant, gffread, gtf_to_sam, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/curare |
singularity registry hpc automated addition for curare |
bsdcat, bsdcpio, bsdtar, conda2solv, curare, curare_wizard, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, stone, conda-env, cph, pulptest, cbc, clp, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, snakemake, snakemake-bash-completion |
|
GITHUB
|
quay.io/biocontainers/cured |
singularity registry hpc automated addition for cured |
Bifrost, CURED_FindREs.py, CURED_Main.py, dataformat, datasets, mlst, mlst-ST_mini_genomes, mlst-consistency_checker, mlst-download_pub_mlst, mlst-make_blast_db, mlst-show_seqs, unitig-caller, TMalign, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gawk-5.3.0, gbf2fsa, gbf2ref, gm2ranges, gm2segs |
|
GITHUB
|
quay.io/biocontainers/curesim |
shpc-registry automated BioContainers addition for curesim |
curesim, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
|
GITHUB
|
quay.io/biocontainers/curl |
shpc-registry automated BioContainers addition for curl |
curl, curl-config |
|
GITHUB
|
quay.io/biocontainers/curlywhirly |
shpc-registry automated BioContainers addition for curlywhirly |
curlywhirly, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/curves |
shpc-registry automated BioContainers addition for curves |
AddToBox, Canal, Canion, CartHess2FC.py, ChBox, Cur+, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, bondtype, bondtype.orig, car_to_files.py, ceinutil.py, cestats, charmmlipid2amber.py, cpeinutil.py, cphstats, cpinutil.py, cpptraj, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gwh, hcp_getpdb, makeANG_RST, makeDIST_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, pbsa, pdb4amber, prepgen, process_mdout.perl, process_minout.perl, pymdpbsa, pytleap, reduce, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tleap, ucpp, xaLeap, xleap, xparmed, cygdb, cython, cythonize, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
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GITHUB
|
quay.io/biocontainers/customtkinter |
singularity registry hpc automated addition for customtkinter |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/cutadapt |
shpc-registry automated BioContainers addition for cutadapt |
cutadapt, pigz, unpigz, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7 |
|
GITHUB
|
quay.io/biocontainers/cutesv |
shpc-registry automated BioContainers addition for cutesv |
cuteSV, vcf_sample_filter.py, vcf_filter.py, vcf_melt, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/cutqc |
shpc-registry automated BioContainers addition for cutqc |
cutqc, fastqc_report.Rmd, fastqc_single_report.Rmd, cutadapt, fastqc, igzip, pbunzip2, pbzcat, pbzip2, gawk-5.1.0, awk, gawk, pigz |
|
GITHUB
|
quay.io/biocontainers/cuttlefish |
shpc-registry automated BioContainers addition for cuttlefish |
cuttlefish |
|
GITHUB
|
quay.io/biocontainers/cvanmf |
singularity registry hpc automated addition for cvanmf |
decompose, rank_select, reapply, regu_select, biom, h5tools_test_utils, idle3.13, pydoc3.13, python3.13, python3.13-config, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, h5fuse.sh, h5delete, numpy-config, py.test, pytest, natsort, tqdm, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer |
|
GITHUB
|
quay.io/biocontainers/cvbio |
shpc-registry automated BioContainers addition for cvbio |
cvbio, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/cvlr |
singularity registry hpc automated addition for cvlr |
cvlr-cluster, cvlr-meth-of-bam, cvlr-stats.py, cvlrcommon.py, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, htsfile, bgzip, tabix, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/cwl2wdl |
shpc-registry automated BioContainers addition for cwl2wdl |
cwl2wdl, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/cwltest |
shpc-registry automated BioContainers addition for cwltest |
black, blackd, cwltest, mock-cwl-runner, schema-salad-doc, schema-salad-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, doesitcache, normalizer, 2to3-3.10 |
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GITHUB
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quay.io/biocontainers/cwltool |
shpc-registry automated BioContainers addition for cwltool |
cwltest, cwltool, avro, schema-salad-doc, schema-salad-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, doesitcache, futurize |
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GITHUB
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quay.io/biocontainers/cycle_finder |
singularity registry hpc automated addition for cycle_finder |
blastn_vdb, cycle_finder, tblastn_vdb, gunzip, gzexe, gzip, trf4.10.0-rc.2.linux64.exe, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zmore, znew, trf, uuid, uuid-config, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454 |
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GITHUB
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quay.io/biocontainers/cyntenator |
shpc-registry automated BioContainers addition for cyntenator |
cyntenator |
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GITHUB
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quay.io/biocontainers/cyordereddict |
shpc-registry automated BioContainers addition for cyordereddict |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/cyrcular |
singularity registry hpc automated addition for cyrcular |
cyrcular |
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GITHUB
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quay.io/biocontainers/cytocad |
shpc-registry automated BioContainers addition for cytocad |
cytocad, rfmix2tagore.py, tagore, f2py3.6, rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, fasta-sanitize.pl, shiftBed, plot-ampliconstats, annotateBed |
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GITHUB
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quay.io/biocontainers/cytoscape |
shpc-registry automated BioContainers addition for cytoscape |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell |
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GITHUB
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quay.io/biocontainers/cytosnake |
singularity registry hpc automated addition for cytosnake |
cytosnake, eido, jsondiff, jsonpatch, jsonpointer, protoc-23.4.0, mamba-package, conda2solv, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, markdown-it, bsdcat, bsdcpio, bsdtar, conda-env, cph, stone, yte, plac_runner.py, docutils, pulptest, cbc, clp, humanfriendly, snakemake, snakemake-bash-completion, jp.py |
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GITHUB
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quay.io/biocontainers/cytotrace2-python |
singularity registry hpc automated addition for cytotrace2-python |
cytotrace2, torch_shm_manager, pandoc-lua, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, protoc-25.3.0, numpy-config, torchrun, isympy, h5tools_test_utils, pandoc-server, scanpy, convert-caffe2-to-onnx, convert-onnx-to-caffe2, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology |
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GITHUB
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quay.io/biocontainers/cyushuffle |
shpc-registry automated BioContainers addition for cyushuffle |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/cyvcf |
shpc-registry automated BioContainers addition for cyvcf |
|
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GITHUB
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quay.io/biocontainers/cyvcf2 |
shpc-registry automated BioContainers addition for cyvcf2 |
cyvcf2, coloredlogs, humanfriendly, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
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quay.io/biocontainers/czlab_perl_lib |
singularity registry hpc automated addition for czlab_perl_lib |
bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc, bp_genbank2gff3, bp_index, bp_local_taxonomydb_query, bp_make_mrna_protein, bp_mask_by_search, bp_mrtrans, bp_mutate, bp_nexus2nh, bp_nrdb, bp_oligo_count, bp_process_gadfly, bp_process_sgd, bp_revtrans-motif, bp_search2alnblocks, bp_search2gff |
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GITHUB
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quay.io/biocontainers/d4binding |
singularity registry hpc automated addition for d4binding |
starcode |
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GITHUB
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quay.io/biocontainers/d4tools |
singularity registry hpc automated addition for d4tools |
d4tools, starcode |
|
GITHUB
|
quay.io/biocontainers/dadaist2-full |
shpc-registry automated BioContainers addition for dadaist2-full |
D2-AbundancesPhyloseq.R, D2-AlphaDivPhyloseq.R, D2-BetaDivPhyloseq.R, D2-FilterPhyloseq.R, D2-checkLibrary.R, D2-checkPhyloseq.R, D2-dada-SE.R, D2-dada-taxonomy.R, D2-dada.R, D2-decipher.R, D2-importPhyloseq.R, D2-updateMetadataPhyloseq.R, dadaist2, dadaist2-addTaxToFasta, dadaist2-alpha, dadaist2-assigntax, dadaist2-crosstalk, dadaist2-dada2fasta, dadaist2-exporter, dadaist2-getdb, dadaist2-importq2, dadaist2-mergeseqs, dadaist2-metadata, dadaist2-mqc-report, dadaist2-normalize, dadaist2-phyloseqCheck, dadaist2-phyloseqMake, dadaist2-taxonomy-binning, dadaist2-taxplot, dadaist2-transposetaxa.py, fqc, fqlen.pl, fu-16Sregion, fu-cov, fu-homocomp, fu-index, fu-multirelabel, fu-nanotags, fu-orf, fu-primers, fu-shred, fu-sw, fu-tabcheck, fu-virfilter, installPackages.R, itsxpress, qax, rhea-alpha.R, rhea-binning.R, rhea-normalize.R, seqfu, clustalo, kmutate.sh, multiqc, runhmm.sh, zip, fastp, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh |
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GITHUB
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quay.io/biocontainers/dadaist2 |
shpc-registry automated BioContainers addition for dadaist2 |
|
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GITHUB
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quay.io/biocontainers/dadi |
shpc-registry automated BioContainers addition for dadi |
compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, qwebengine_convert_dict |
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GITHUB
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quay.io/biocontainers/daisysuite |
shpc-registry automated BioContainers addition for daisysuite |
DaisySuite, DaisySuite_example, DaisySuite_setup, DaisySuite_stats, DaisySuite_template, add-score-tags-to-bam, bam-to-alignment-priors, bam2fastq, clever, clever-core, ctk-version, evaluate-sv-predictions, extract-bad-reads, filter-bam, filter-variations, genotyper, gustaf, gustaf_mate_joining, insert-length-histogram, laser, laser-core, laser-recalibrate, mason_frag_sequencing, mason_genome, mason_materializer, mason_methylation, mason_simulator, mason_splicing, mason_variator, mateclever, mateclever-compute-rois, merge-to-vcf, merge-variation-lists, multiline-to-xa, plot-insert-size-distribution, postprocess-predictions, precompute-distributions, read-group-stats, remove-redundant-variations, sak, split-priors-by-chromosome, split-reads, stellar, vcf-to-deletionlist, yara_indexer, yara_mapper, stone, snakemake, snakemake-bash-completion, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config |
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GITHUB
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quay.io/biocontainers/dajin2 |
singularity registry hpc automated addition for dajin2 |
DAJIN2, kaleido, mathjax-path, waitress-serve, minimap2.py, flask, certutil, nspr-config, nss-config, pk12util, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/daligner |
shpc-registry automated BioContainers addition for daligner |
HPC.daligner, LAcat, LAcheck, LAdump, LAindex, LAmerge, LAshow, LAsort, LAsplit, daligner |
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GITHUB
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quay.io/biocontainers/damageprofiler |
shpc-registry automated BioContainers addition for damageprofiler |
damageprofiler, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/damasker |
shpc-registry automated BioContainers addition for damasker |
HPC.REPmask, HPC.TANmask, REPmask, TANmask, datander |
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GITHUB
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quay.io/biocontainers/damidseq_pipeline |
shpc-registry automated BioContainers addition for damidseq_pipeline |
damidseq_pipeline, gatc.track.maker.pl, gff2tdf.pl, igvtools, varfilter.py, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, jaotc |
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GITHUB
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quay.io/biocontainers/dammet |
shpc-registry automated BioContainers addition for dammet |
DamMet, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/dammit |
shpc-registry automated BioContainers addition for dammit |
SplicedAlignment.pm, TransDecoder.LongOrfs, TransDecoder.Predict, aa2nonred.pl, abundance-dist-single.py, abundance-dist.py, annotate-partitions.py, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, autoRun.pathInfo, bam2wig, bamToWig.py, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, cdna_alignment_orf_to_genome_orf.pl, cegma2gff.pl, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, compare_masking.pl, compileSpliceCands, computeFlankingRegion.pl, compute_base_probs.pl, count-median.py, createAugustusJoblist.pl, dammit, del_from_prfl.pl, do-partition.py, doit, espoca, evalCGP.pl, eval_dualdecomp.pl, eval_multi_gtf.pl, exclude_similar_proteins.pl, exonerate2hints.pl, exoniphyDb2hints.pl, extract-long-sequences.py, extract-paired-reads.py, extract-partitions.py, extractTranscriptEnds.pl, fasta_prot_checker.pl, fastq-interleave, fastq-to-fasta.py, ffindex_resume.pl, filter-abund-single.py, filter-abund.py, filter-ppx.pl, filter-stoptags.py, filterGenes.pl, filterGenesIn.pl, filterGenesIn_mRNAname.pl, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, find-knots.py, findGffNamesInFasta.pl, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, gene_list_to_gff.pl, generate_plot, generate_plot.py, getAnnoFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, getSeq, get_FL_accs.pl, get_longest_ORF_per_transcript.pl, get_top_longest_fasta_entries.pl, gff2gbSmallDNA.pl, gff2ps_mycustom, gff3_file_to_bed.pl, gff3_file_to_proteins.pl, gff3_gene_to_gtf_format.pl, gffGetmRNA.pl, gp2othergp.pl, gtf2aa.pl, gtf2gff.pl, gtf_genome_to_cdna_fasta.pl, gtf_to_alignment_gff3.pl, gtf_to_bed.pl, gth2gtf.pl, hal2maf_split.pl, helpMod.pm, interleave-reads.py, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, last-dotplot, last-map-probs, last-merge-batches, last-pair-probs, last-postmask, last-split, last-split8, last-train, lastal, lastal8, lastdb, lastdb8, load-graph.py, load-into-counting.py, load2sqlitedb, lp_solve, maf-convert, maf-cut, maf-join, maf-sort, maf-swap, maf2conswig.pl, make-initial-stoptags.py, makeMatchLists.pl, makeUtrTrainingSet.pl, maskNregions.pl, merge-partitions.py, merge_masking.pl, moveParameters.pl, msa2prfl.pl, new_species.pl, normalize-by-median.py, nr_ORFs_gff3.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parallel-fasta, parallel-fastq, parseSim4Output.pl, partition-graph.py, partition_gtf2gb.pl, pasapolyA2hints.pl, peptides2alternatives.pl, peptides2hints.pl, pfam_runner.pl, phastconsDB2hints.pl, polyA2hints.pl, prints2prfl.pl, pslMap.pl, randomSplit.pl, ratewig.pl, readstats.py, refine_gff3_group_iso_strip_utrs.pl, refine_hexamer_scores.pl, remove_eclipsed_ORFs.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, run_BUSCO.py, run_busco, samMap.pl, sample-reads-randomly.py, scipiogff2gff.pl, score_CDS_likelihood_all_6_frames.pl, select_best_ORFs_per_transcript.pl, seq_n_baseprobs_to_loglikelihood_vals.pl, setStopCodonFreqs.pl, shmlast, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, split-paired-reads.py, splitMfasta.pl, split_wiggle.pl, start_codon_refinement.pl, summarizeACGTcontent.pl, train_start_PWM.pl, transMap2hints.pl, trim-low-abund.py, unique-kmers.py, uniquePeptides.pl, uri_unescape.pl, utrgff2gbrowse.pl, utrrnaseq, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, yaml2gff.1.4.pl, augustus, bam2hints, etraining, fastBlockSearch, filterBam, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign, build.sh |
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GITHUB
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quay.io/biocontainers/danbing-tk |
singularity registry hpc automated addition for danbing-tk |
danbing-tk, danbing-tk-pred, genPanKmers, ktools, vntr2kmers_thread |
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GITHUB
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quay.io/biocontainers/danpos |
shpc-registry automated BioContainers addition for danpos |
danpos.py, functions.py, lib.py, reads.py, summits.py, wig.py, wigs.py, wiq.py, f2py2, f2py2.7, bcftools, vcfutils.pl, python2-config, python2.7-config, python2, python2.7, idle, python-config |
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GITHUB
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quay.io/biocontainers/dapcy |
singularity registry hpc automated addition for dapcy |
qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, protoc-25.3.0, dask, cyvcf2, annot-tsv, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, dask-scheduler, dask-ssh, dask-worker, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, bokeh |
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GITHUB
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quay.io/biocontainers/dart |
shpc-registry automated BioContainers addition for dart |
bwt_index, dart |
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GITHUB
|
quay.io/biocontainers/das_tool |
shpc-registry automated BioContainers addition for das_tool |
Contigs2Bin_to_Fasta.sh, DAS_Tool, Fasta_to_Contig2Bin.sh, pullseq, seqdiff, erb, gem, irb, rake, rdoc, ri, ruby, funzip, unzipsfx, zipgrep |
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GITHUB
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quay.io/biocontainers/dascrubber |
shpc-registry automated BioContainers addition for dascrubber |
DASedit, DASmap, DASpatch, DASqv, DASrealign, DAStrim, REPqv, REPtrim |
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GITHUB
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quay.io/biocontainers/dashing |
shpc-registry automated BioContainers addition for dashing |
dashing |
|
GITHUB
|
quay.io/biocontainers/dastk |
singularity registry hpc automated addition for dastk |
barcode_plot, differential_md_score, ma_plot, process_atac, tf_intersect, tf_result_explanations, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap, groupBy |
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GITHUB
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quay.io/biocontainers/data_hacks |
shpc-registry automated BioContainers addition for data_hacks |
bar_chart.py, histogram.py, ninety_five_percent.py, run_for.py, sample.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/datafunk |
shpc-registry automated BioContainers addition for datafunk |
cchardetect, datafunk, datapackage, jsonpointer, tableschema, tabulator, unidecode, runxlrd.py, jp.py, jsonschema, f2py3.8, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8 |
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GITHUB
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quay.io/biocontainers/datamash |
shpc-registry automated BioContainers addition for datamash |
datamash |
|
GITHUB
|
quay.io/biocontainers/datavzrd |
singularity registry hpc automated addition for datavzrd |
datavzrd |
|
GITHUB
|
quay.io/biocontainers/datma |
shpc-registry automated BioContainers addition for datma |
assembly_annotation_tool.py, assembly_annotation_tool_seq.py, binning, binning_tool.py, checkm, clame, datma.py, datma_seq.py, exportTools.sh, filterQuality.py, finalReport.py, finalReport2.py, flash2, genFm9, general.py, icarus.py, kaiju, kaiju-addTaxonNames, kaiju-convertMAR.py, kaiju-convertNR, kaiju-excluded-accessions.txt, kaiju-gbk2faa.pl, kaiju-makedb, kaiju-mergeOutputs, kaiju-mkbwt, kaiju-mkfmi, kaiju-multi, kaiju-taxonlistEuk.tsv, kaiju2krona, kaiju2table, kaijup, kaijux, ktClassifyHits, ktImportHits, map_genFm9.py, mapping, mergeNotCombined, merge_tool.py, metaquast, metaquast.py, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, rapifilt, rdp_classifier, removal_tool.py, runDATMA.sh, selectFasta, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, circos, circos.exe, compile.bat, compile.make, gddiag, glimmerhmm, glimmhmm.pl |
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GITHUB
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quay.io/biocontainers/dawg |
shpc-registry automated BioContainers addition for dawg |
dawg, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/dazz_db |
shpc-registry automated BioContainers addition for dazz_db |
Catrack, DAM2fasta, DB2arrow, DB2fasta, DB2quiva, DBdump, DBdust, DBrm, DBshow, DBsplit, DBstats, DBtrim, DBwipe, arrow2DB, fasta2DAM, fasta2DB, quiva2DB, rangen, simulator |
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GITHUB
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quay.io/biocontainers/dbcan |
singularity registry hpc automated addition for dbcan |
hmmscan_parser.py, run_dbcan, diamond, natsort, prodigal, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn, esl-seqrange, esl-seqstat, esl-sfetch, esl-shuffle, esl-ssdraw, esl-translate |
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GITHUB
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quay.io/biocontainers/dbcanlight |
singularity registry hpc automated addition for dbcanlight |
dbcanLight, dbcanLight-hmmparser, dbcanLight-subparser, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/dbghaplo |
singularity registry hpc automated addition for dbghaplo |
dbghaplo, haplotag_bam, lofreq, lofreq2_call_pparallel.py, lofreq2_indel_ovlp.py, lofreq2_somatic.py, lofreq2_vcfplot.py, run_dbghaplo_pipeline, write_contig_headers_vcf.py, annot-tsv, minimap2, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl |
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GITHUB
|
quay.io/biocontainers/dbgraph |
shpc-registry automated BioContainers addition for dbgraph |
DBGraph2Pro, DBGraphPep2Pro |
|
GITHUB
|
quay.io/biocontainers/dca |
shpc-registry automated BioContainers addition for dca |
dca, dunamai, hyperopt-mongo-worker, zstdcat, scanpy, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, pt2to3, ptdump, ptrepack, pttree |
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GITHUB
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quay.io/biocontainers/dcc |
singularity registry hpc automated addition for dcc |
DCC, htseq-count-barcodes, htseq-count, htseq-qa, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/dcmtk |
shpc-registry automated BioContainers addition for dcmtk |
cda2dcm, dcm2json, dcm2pdf, dcm2pnm, dcm2xml, dcmcjpeg, dcmcjpls, dcmconv, dcmcrle, dcmdata_tests, dcmdjpeg, dcmdjpls, dcmdrle, dcmdspfn, dcmdump, dcmect_tests, dcmfg_tests, dcmftest, dcmgpdir, dcmicmp, dcmiod_tests, dcmj2pnm, dcml2pnm, dcmmkcrv, dcmmkdir, dcmmklut, dcmnet_tests, dcmodify, dcmp2pgm, dcmprscp, dcmprscu, dcmpschk, dcmpsmk, dcmpsprt, dcmpsrcv, dcmpssnd, dcmqridx, dcmqrscp, dcmqrti, dcmquant, dcmrecv, dcmrt_tests, dcmscale, dcmseg_tests, dcmsend, dcmsign, dcmsr_tests, dcmtls_tests, dcod2lum, dconvlum, drtdump, drttest, dsr2html, dsr2xml, dsrdump, dump2dcm, echoscu, findscu, getscu, img2dcm, mkreport, movescu, msgserv, ofstd_tests, pdf2dcm, stl2dcm, storescp, storescu, termscu, wlmscpfs, wltest, xml2dcm, xml2dsr, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set |
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GITHUB
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quay.io/biocontainers/dcplib |
shpc-registry automated BioContainers addition for dcplib |
jp.py, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py |
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GITHUB
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quay.io/biocontainers/ddipy |
shpc-registry automated BioContainers addition for ddipy |
omicsdi, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/ddocent |
shpc-registry automated BioContainers addition for ddocent |
ErrorCount.sh, RefMapOpt.sh, ReferenceOpt.sh, Rename_SequenceFiles.sh, dDocent, dDocent_filters, filter_hwe_by_pop.pl, filter_missing_ind.sh, mawk, pear, pearRM, pop_missing_filter.sh, rainbow, remake_reference.sh, remove.bad.hap.loci.sh, sam_add_rg.pl, select_all_rbcontig.pl, select_all_rbcontig.pl.bak, select_best_rbcontig.pl, select_best_rbcontig.pl.bak, select_best_rbcontig_plus_read1.pl, select_best_rbcontig_plus_read1.pl.bak, select_sec_rbcontig.pl, select_sec_rbcontig.pl.bak, split_ref_by_bai_datasize.py, update_version.sh, vcftools, fill-aa, fill-an-ac, fill-fs, fill-ref-md5, vcf-annotate, vcf-compare, vcf-concat, vcf-consensus, vcf-contrast, vcf-convert |
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GITHUB
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quay.io/biocontainers/ddqc |
singularity registry hpc automated addition for ddqc |
cllayerinfo, demuxEM, pegasus, pegasusio, protoc-28.3.0, torchfrtrace, wordcloud_cli, loompy, pybind11-config, torch_shm_manager, vba_extract.py, isympy, torchrun, igraph, jwebserver, h5tools_test_utils, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info |
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GITHUB
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quay.io/biocontainers/ddrage |
shpc-registry automated BioContainers addition for ddrage |
|
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GITHUB
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quay.io/biocontainers/deacon |
singularity registry hpc automated addition for deacon |
deacon |
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GITHUB
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quay.io/biocontainers/deap |
shpc-registry automated BioContainers addition for deap |
curve_keygen, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc |
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GITHUB
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quay.io/biocontainers/debarcer |
shpc-registry automated BioContainers addition for debarcer |
debarcer, pygal_gen.py, f2py3.7, img2webp, cwebp, dwebp, gif2webp, opj_compress, opj_decompress, opj_dump, 2to3-3.7, idle3.7 |
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GITHUB
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quay.io/biocontainers/deblur |
shpc-registry automated BioContainers addition for deblur |
deblur, indexdb_rna, sortmerna, biom, vsearch, doesitcache, ipython3, ipython, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi |
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GITHUB
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quay.io/biocontainers/debreak |
singularity registry hpc automated addition for debreak |
bsalign, complexsv.py, debreak, debreak_allpoa.py, debreak_detect.py, debreak_genotype.py, debreak_merge.py, debreak_merge_cluster.py, debreak_merge_contig.py, debreak_rescuedupfromins.py, debreak_rescuelargeins.py, debreak_resdup_selfalignment.py, debreak_writevcf.py, genefusion.py, wtdbg-cns, wtdbg2, wtpoa-cns, paftools.js, minimap2, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim, wgsim_eval.pl, samtools, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/debwt |
shpc-registry automated BioContainers addition for debwt |
deBWT |
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GITHUB
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quay.io/biocontainers/dechat |
singularity registry hpc automated addition for dechat |
dechat, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp, h5perf_serial, h5redeploy, h5repack, h5repart, h5stat, h5unjam, h5dump, h5cc |
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GITHUB
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quay.io/biocontainers/decifer |
shpc-registry automated BioContainers addition for decifer |
decifer, dimacs-solver, dimacs-to-lgf, fitbeta, generatestatetrees, lemon-0.x-to-1.x.sh, lgf-gen, mergestatetrees, cbc, clp, glpsol, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress |
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GITHUB
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quay.io/biocontainers/decom |
singularity registry hpc automated addition for decom |
cmtime, decOM, decOM-CV, decOM-LOO, decOM-MST, decOM-aOralOut, decOM-format, elastipubsub5, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, io_demo, kaleido, mathjax-path, mckey, mqtt5_app, mqtt5_canary, mqtt5canary, opj_decompress, protoc-23.4.0, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, scalar, ucmatose, ucx_info, ucx_perftest, ucx_read_profile, udaddy, udpong, dask, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, elasticurl, elasticurl_cpp, elastipubsub, csv-import, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, dask-scheduler, dask-ssh, dask-worker |
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GITHUB
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quay.io/biocontainers/decoupler |
singularity registry hpc automated addition for decoupler |
h5delete, aec, f2py3.11, numba, natsort, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tqdm, brotli, normalizer, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam |
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GITHUB
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quay.io/biocontainers/decoypyrat |
shpc-registry automated BioContainers addition for decoypyrat |
decoypyrat, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/dedup |
shpc-registry automated BioContainers addition for dedup |
dedup, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/deepac |
shpc-registry automated BioContainers addition for deepac |
deepac, theano-cache, theano-nose, freeze_graph, mako-render, tf_upgrade_v2, compile-et.pl, prerr.properties, tflite_convert, saved_model_cli, toco |
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GITHUB
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quay.io/biocontainers/deepaccess |
shpc-registry automated BioContainers addition for deepaccess |
deepaccess, import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2 |
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GITHUB
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quay.io/biocontainers/deepaclive |
shpc-registry automated BioContainers addition for deepaclive |
deepac, deepac-live, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng |
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GITHUB
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quay.io/biocontainers/deepacstrain |
shpc-registry automated BioContainers addition for deepacstrain |
deepac, deepac-strain, pyjwt, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng |
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GITHUB
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quay.io/biocontainers/deepacvir |
shpc-registry automated BioContainers addition for deepacvir |
deepac, deepac-vir, pyjwt, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng |
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GITHUB
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quay.io/biocontainers/deeparg |
shpc-registry automated BioContainers addition for deeparg |
deeparg, theano-test, theano-cache, theano-nose, ete3, diamond, tabulate, qhelpconverter, f2py2, f2py2.7, idn2, qwebengine_convert_dict |
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GITHUB
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quay.io/biocontainers/deepbgc |
shpc-registry automated BioContainers addition for deepbgc |
deepbgc, g-ir-doc-tool, theano-cache, theano-nose, freeze_graph, mako-render, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner |
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GITHUB
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quay.io/biocontainers/deepbinner |
shpc-registry automated BioContainers addition for deepbinner |
deepbinner, g-ir-doc-tool, theano-cache, theano-nose, freeze_graph, mako-render, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner |
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GITHUB
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quay.io/biocontainers/deepchopper-cli |
singularity registry hpc automated addition for deepchopper-cli |
deepchopper-chop, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/deepdetails |
singularity registry hpc automated addition for deepdetails |
deepdetails, protoc-29.3.0, protoc-gen-upb, protoc-gen-upb-29.3.0, protoc-gen-upb_minitable, protoc-gen-upb_minitable-29.3.0, protoc-gen-upbdefs, protoc-gen-upbdefs-29.3.0, torchfrtrace, wandb, wb, bedGraphToBigWig, pybind11-config, torch_shm_manager, isympy, torchrun, h5tools_test_utils, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, tensorboard, vcf_sample_filter.py, h5fuse.sh, vcf_filter.py, vcf_melt, my_print_defaults, mysql_config, perror, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir |
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GITHUB
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quay.io/biocontainers/deepdirect |
singularity registry hpc automated addition for deepdirect |
deepdirect, flatc, h5fuse.sh, import_pb_to_tensorboard, h5delete, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, markdown_py, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, tjbench |
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GITHUB
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quay.io/biocontainers/deepfplearn |
singularity registry hpc automated addition for deepfplearn |
dfpl, shortuuid, wandb, wb, h5delete, import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, aec, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, markdown_py, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify |
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GITHUB
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quay.io/biocontainers/deeplc |
shpc-registry automated BioContainers addition for deeplc |
deeplc, deeplc-gui, import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2 |
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GITHUB
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quay.io/biocontainers/deeplcretrainer |
singularity registry hpc automated addition for deeplcretrainer |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
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quay.io/biocontainers/deeplift |
shpc-registry automated BioContainers addition for deeplift |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/deepmased |
shpc-registry automated BioContainers addition for deepmased |
DeepMAsED, theano-cache, theano-nose, estimator_ckpt_converter, mako-render, tf_upgrade_v2, iptest3, tflite_convert, saved_model_cli, toco, toco_from_protos |
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GITHUB
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quay.io/biocontainers/deepmedic |
shpc-registry automated BioContainers addition for deepmedic |
deepMedicRun, nib-dicomfs, nib-diff, nib-ls, nib-nifti-dx, nib-tck2trk, nib-trk2tck, parrec2nii, ppserver.py, unit2, theano-cache, theano-nose, mako-render, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7 |
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GITHUB
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quay.io/biocontainers/deepmei |
singularity registry hpc automated addition for deepmei |
bigRmskAlignBed.as, bigRmskBed.as, combineRMFiles.pl, deepmeiv1, makeclusterdb, maskFile.pl, renumberRMFiles.pl, rmToTrackHub.pl, RM2Bed.py, buildRMLibFromEMBL.pl, buildSummary.pl, wublastToCrossmatch.pl, DupMasker, ProcessRepeats, RepeatMasker, RepeatProteinMask, calcDivergenceFromAlign.pl, createRepeatLandscape.pl, dupliconToSVG.pl, getRepeatMaskerBatch.pl, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, trfMask, rmblastn, trf4.10.0-rc.2.linux64.exe, blast_report, blastdb_convert, blastdb_path, trf, metadata_conda_debug.yaml, import_pb_to_tensorboard, estimator_ckpt_converter |
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GITHUB
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quay.io/biocontainers/deepmicro |
singularity registry hpc automated addition for deepmicro |
DM.py, DNN_models.py, exception_handle.py, flatc, h5delete, import_pb_to_tensorboard, aec, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tensorboard, markdown_py, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, protoc |
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GITHUB
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quay.io/biocontainers/deepmod |
shpc-registry automated BioContainers addition for deepmod |
DeepMod.py, cal_EcoliDetPerf.py, generate_motif_pos.py, hm_cluster_predict.py, sum_chr_mod.py, freeze_graph, saved_model_cli, toco, toco_from_protos, tensorboard, markdown_py, sdust, paftools.js, minimap2, k8 |
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GITHUB
|
quay.io/biocontainers/deepnog |
shpc-registry automated BioContainers addition for deepnog |
deepnog, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, tensorboard, markdown_py, protoc, tqdm, f2py3.7, 2to3-3.7, idle3.7 |
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GITHUB
|
quay.io/biocontainers/deepsig |
shpc-registry automated BioContainers addition for deepsig |
deepsig, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, pyrsa-decrypt, pyrsa-encrypt |
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GITHUB
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quay.io/biocontainers/deepsignal-plant |
shpc-registry automated BioContainers addition for deepsignal-plant |
deepsignal_plant, torchrun, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, futurize, pasteurize, f2py3.9, h5clear, h5format_convert, h5watch, h5fc |
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GITHUB
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quay.io/biocontainers/deepstats |
shpc-registry automated BioContainers addition for deepstats |
dsCompareCurves, dsComputeBEDDensity, dsComputeGCCoverage, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run, iptest3, curve_keygen |
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GITHUB
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quay.io/biocontainers/deepsvr |
shpc-registry automated BioContainers addition for deepsvr |
bam-readcount, convert_zero_one_based, deepsvr, pbr, theano-cache, theano-nose, mako-render, perl5.22.0, tensorboard, c2ph, pstruct, qhelpconverter, protoc |
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GITHUB
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quay.io/biocontainers/deeptools |
shpc-registry automated BioContainers addition for deeptools |
alignmentSieve, bamCompare, bamCoverage, bamPEFragmentSize, bigwigCompare, computeGCBias, computeMatrix, computeMatrixOperations, correctGCBias, deeptools, estimateReadFiltering, estimateScaleFactor, multiBamSummary, multiBigwigSummary, plotCorrelation, plotCoverage, plotEnrichment, plotFingerprint, plotHeatmap, plotPCA, plotProfile, g-ir-doc-tool, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, jupyter-trust, jupyter, jupyter-migrate, jupyter-troubleshoot |
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GITHUB
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quay.io/biocontainers/deeptoolsintervals |
shpc-registry automated BioContainers addition for deeptoolsintervals |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/deepvariant |
shpc-registry automated BioContainers addition for deepvariant |
bq, docker-credential-gcloud, dv_call_variants.py, dv_make_examples.py, dv_postprocess_variants.py, gcloud, gsutil, funzip, unzipsfx, zipgrep, zipinfo, freeze_graph, google-oauthlib-tool, unzip, clhsdb, hsdb |
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GITHUB
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quay.io/biocontainers/defense-finder |
singularity registry hpc automated addition for defense-finder |
defense-finder, macsyconfig, macsydata, macsyfinder, macsymerge, macsyprofile, macsysplit, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn, esl-seqrange, esl-seqstat, esl-sfetch, esl-shuffle, esl-ssdraw, esl-translate, esl-weight, esl-afetch, esl-reformat |
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GITHUB
|
quay.io/biocontainers/defiant |
shpc-registry automated BioContainers addition for defiant |
defiant, roi |
|
GITHUB
|
quay.io/biocontainers/degenotate |
singularity registry hpc automated addition for degenotate |
degenotate.py, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/dehomopolymerate |
shpc-registry automated BioContainers addition for dehomopolymerate |
dehomopolymerate |
|
GITHUB
|
quay.io/biocontainers/delegation |
shpc-registry automated BioContainers addition for delegation |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/delly |
shpc-registry automated BioContainers addition for delly |
delly, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/deltabs |
shpc-registry automated BioContainers addition for deltabs |
buildCustomModels.pl, deltaBS.pl, giffilter, gifsponge, gifecho, gifinto, gdlib-config, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml |
|
GITHUB
|
quay.io/biocontainers/deltamsi |
singularity registry hpc automated addition for deltamsi |
DeltaMSI, tqdm, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
|
quay.io/biocontainers/deltapd |
shpc-registry automated BioContainers addition for deltapd |
attr, balsam, deltapd, esdcompat, getfattr, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, lprodump, lrelease-pro, lupdate-pro, meshdebug, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set |
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GITHUB
|
quay.io/biocontainers/demultiplexer |
singularity registry hpc automated addition for demultiplexer |
demultiplexer, psghelp, psgissue, psgmain, psgsettings, psgupgrade, psgver, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/demuxem |
shpc-registry automated BioContainers addition for demuxem |
demuxEM, pegasusio, natsort, mirror_server, mirror_server_stop, fonttools, pyftmerge, pyftsubset, ttx, brotli, img2webp, cwebp |
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GITHUB
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quay.io/biocontainers/demuxlet |
shpc-registry automated BioContainers addition for demuxlet |
demuxlet, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats |
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GITHUB
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quay.io/biocontainers/dendropy |
shpc-registry automated BioContainers addition for dendropy |
dendropy-format, sumlabels.py, sumtrees.py, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/denovogear |
shpc-registry automated BioContainers addition for denovogear |
dng, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/deploid |
shpc-registry automated BioContainers addition for deploid |
dEploid, dEploid_dbg |
|
GITHUB
|
quay.io/biocontainers/derip2 |
singularity registry hpc automated addition for derip2 |
derip2, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, tqdm, fonttools, pyftmerge, pyftsubset, ttx, brotli, tjbench, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, opj_compress, opj_decompress, opj_dump |
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GITHUB
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quay.io/biocontainers/derna |
singularity registry hpc automated addition for derna |
derna |
|
GITHUB
|
quay.io/biocontainers/desalt |
shpc-registry automated BioContainers addition for desalt |
Annotation_Load.py, deBGA, deSALT |
|
GITHUB
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quay.io/biocontainers/desman |
shpc-registry automated BioContainers addition for desman |
AddLengths.pl, CalcDelta.py, CalcGeneCov.py, ClassifyContigNR.py, ClusterMeanCov.py, Collate.pl, CombineTau.pl, CompAssign.py, ExtractCogs.py, ExtractCountFreqGenes.py, ExtractCountFreqP.pl, ExtractGenes.py, Filter.pl, GeneAssign.py, GetVariants.py, GetVariantsCore.py, GetVariantsEta.py, LabelSMap.pl, LengthFilter.py, Lengths.py, MapCogBack.pl, MapGHeader.pl, NormGeneCounts.py, PlotDev.R, PlotLL.R, ReverseStrand.pl, Select.sh, SelectClusterCogs.pl, SelectContigsPos.pl, SelectGene.py, SplitClusters.pl, TauFasta.pl, Variant_Filter.py, contig_read_count_per_genome.py, desman, desmanflow.nf, extract_species_contigs.py, gene_read_count_per_genome.py, get_elite_range.py, pileups_to_freq_table.py, resolvenhap.py, runDesman.sh, taucomp.py, validateSNP.py, validateSNP2.py, validateSNP3.py, write_strain_fasta.py, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
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GITHUB
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quay.io/biocontainers/detonate |
shpc-registry automated BioContainers addition for detonate |
ref-eval, ref-eval-estimate-true-assembly, rsem-build-read-index, rsem-eval-calculate-score, rsem-eval-estimate-transcript-length-distribution, rsem-eval-run-em, rsem-extract-reference-transcripts, rsem-parse-alignments, rsem-plot-model, rsem-preref, rsem-sam-validator, rsem-scan-for-paired-end-reads, rsem-simulate-reads, rsem-synthesis-reference-transcripts, rsem_perl_utils.pm, varfilter.py, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, perl5.26.2, ace2sam |
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GITHUB
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quay.io/biocontainers/devider |
singularity registry hpc automated addition for devider |
devider, haplotag_bam, lofreq, lofreq2_call_pparallel.py, lofreq2_indel_ovlp.py, lofreq2_somatic.py, lofreq2_vcfplot.py, run_devider_pipeline, write_contig_headers_vcf.py, annot-tsv, sdust, paftools.js, k8, minimap2, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl |
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GITHUB
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quay.io/biocontainers/dextractor |
shpc-registry automated BioContainers addition for dextractor |
dex2DB, dexar, dexqv, dexta, dextract, undexar, undexqv, undexta, mirror_server, mirror_server_stop, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy |
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GITHUB
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quay.io/biocontainers/dfam |
shpc-registry automated BioContainers addition for dfam |
DateRepeats, DupMasker, ProcessRepeats, RM2Bed.py, RepeatMasker, RepeatProteinMask, buildRMLibFromEMBL.pl, buildSummary.pl, calcDivergenceFromAlign.pl, createRepeatLandscape.pl, dfamscan.pl, download-dfam.py, dupliconToSVG.pl, getRepeatMaskerBatch.pl, queryRepeatDatabase.pl, queryTaxonomyDatabase.pl, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, trfMask, wublastToCrossmatch.pl, rmblastn, trf4.10.0-rc.2.linux64.exe, trf, blast_report, blastdb_convert, blastdb_path, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv |
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GITHUB
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quay.io/biocontainers/dfast |
shpc-registry automated BioContainers addition for dfast |
dfast, dfast_file_downloader.py, file_downloader.py, ghostx, mga, blast_report, blastdb_convert, blastdb_path, aragorn, barrnap, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash |
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GITHUB
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quay.io/biocontainers/dfast_qc |
shpc-registry automated BioContainers addition for dfast_qc |
attr, balsam, checkm, dfast_qc, dqc_admin_tools.py, dqc_initial_setup.sh, esdcompat, getfattr, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, lprodump, lrelease-pro, lupdate-pro, meshdebug, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, pulseaudio, pwiz.py, qmlformat, qmltime, qmltyperegistrar, qpaeq, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set |
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GITHUB
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quay.io/biocontainers/dgenies |
shpc-registry automated BioContainers addition for dgenies |
dgenies, pbr, flask, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, markdown_py, fonttools |
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GITHUB
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quay.io/biocontainers/dia_umpire |
shpc-registry automated BioContainers addition for dia_umpire |
dia_umpire_quant, dia_umpire_se, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/dialign-tx |
shpc-registry automated BioContainers addition for dialign-tx |
dialign-tx |
|
GITHUB
|
quay.io/biocontainers/dialign2 |
shpc-registry automated BioContainers addition for dialign2 |
dialign2-2 |
|
GITHUB
|
quay.io/biocontainers/diamond |
shpc-registry automated BioContainers addition for diamond |
diamond |
|
GITHUB
|
quay.io/biocontainers/diamond_add_taxonomy |
shpc-registry automated BioContainers addition for diamond_add_taxonomy |
|
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GITHUB
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quay.io/biocontainers/diapysef |
shpc-registry automated BioContainers addition for diapysef |
annotate_mq_ionmobility.py, convertTDFtoMzML.py, create_library.py, get_dia_windows.py, high_precision_irt.py, plot_dia_windows.py, svm-predict, svm-scale, svm-train, CreateDOMDocument, DOMCount, DOMPrint, EnumVal, MemParse, PParse, PSVIWriter |
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GITHUB
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quay.io/biocontainers/dicey |
shpc-registry automated BioContainers addition for dicey |
dicey, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/diego |
shpc-registry automated BioContainers addition for diego |
HTseq2DIEGO.pl, diego.py, gfftoDIEGObed.pl, pre_STAR.py, pre_segemehl.pl, pre_std.py, pre_tophat.pl, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed |
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GITHUB
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quay.io/biocontainers/difcover |
singularity registry hpc automated addition for difcover |
convert_exp_to_dec_in_unionbed.sh, from_DNAcopyout_to_p_fragments.sh, from_bams_to_unionbed.sh, from_ratio_per_window__to__DNAcopy_output.sh, from_unionbed_to_ratio_per_window_CC0, generate_DNAcopyout_len_histogram.sh, generate_DNAcopyout_len_vs_scores_histogram_bin0.5.sh, get_DNAcopyout_with_length_of_intervals.sh, run_DNAcopy_from_bash.R, run_difcover.sh, annot-tsv, shiftBed, hb-info, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap, groupBy, intersectBed, linksBed, mapBed, maskFastaFromBed |
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GITHUB
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quay.io/biocontainers/diffacto |
shpc-registry automated BioContainers addition for diffacto |
diffacto, xslt-config, xsltproc, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9 |
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GITHUB
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quay.io/biocontainers/dig2 |
shpc-registry automated BioContainers addition for dig2 |
dig2 |
|
GITHUB
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quay.io/biocontainers/digestiflow-cli |
shpc-registry automated BioContainers addition for digestiflow-cli |
digestiflow-cli |
|
GITHUB
|
quay.io/biocontainers/digestiflow-demux |
shpc-registry automated BioContainers addition for digestiflow-demux |
digestiflow-demux, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, coloredlogs, humanfriendly, snakemake |
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GITHUB
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quay.io/biocontainers/dimet |
singularity registry hpc automated addition for dimet |
dotenv, pygrun, coverage, f2py3.11, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc, python3.1 |
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GITHUB
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quay.io/biocontainers/dimspy |
shpc-registry automated BioContainers addition for dimspy |
csc, csc-dim, csi, dimspy, illinkanalyzer, monograph, nunit-console, nunit-console2, nunit-console4, vbc, mono-package-runtime, sgen-grep-binprot, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr |
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GITHUB
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quay.io/biocontainers/dinamo |
shpc-registry automated BioContainers addition for dinamo |
dinamo |
|
GITHUB
|
quay.io/biocontainers/dinf |
singularity registry hpc automated addition for dinf |
demes, demesdraw, dinf, dinf-plot, msp, mspms, tskit, cyvcf2, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, cmark, get_objgraph, undill, coloredlogs, humanfriendly, jsonschema, protoc, pygmentize, fonttools, pyftmerge, pyftsubset, ttx, brotli, futurize, pasteurize, f2py3.10, img2webp |
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GITHUB
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quay.io/biocontainers/dingii |
singularity registry hpc automated addition for dingii |
dingII, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
|
quay.io/biocontainers/dinopy |
shpc-registry automated BioContainers addition for dinopy |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/dinosaur |
shpc-registry automated BioContainers addition for dinosaur |
dinosaur, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/dipcall |
shpc-registry automated BioContainers addition for dipcall |
bedtk, dipcall-aux.js, htsbox, meryl-analyze, meryl-check, meryl-import, meryl-lookup, meryl-simple, run-dipcall, unimap, winnowmap, meryl, perl5.32.0, sdust, paftools.js, minimap2, k8, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl |
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GITHUB
|
quay.io/biocontainers/diphase |
singularity registry hpc automated addition for diphase |
eval.py, phasing, pipeline.py, plot.py, preprocessing.py, tools.py, util.py, qualfa2fq.pl, xa2multi.pl, bwa, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim, wgsim_eval.pl, samtools |
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GITHUB
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quay.io/biocontainers/dirseq |
singularity registry hpc automated addition for dirseq |
bioruby, br_biofetch.rb, br_bioflat.rb, br_biogetseq.rb, br_pmfetch.rb, dirseq, varfilter.py, erb, gem, irb, rake, rdoc, ri, ruby, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap |
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GITHUB
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quay.io/biocontainers/discasm |
shpc-registry automated BioContainers addition for discasm |
DISCASM, PtR, Trinity, TrinityStats.pl, Trinity_gene_splice_modeler.py, abundance_estimates_to_matrix.pl, align_and_estimate_abundance.pl, analyze_blastPlus_topHit_coverage.pl, analyze_diff_expr.pl, contig_ExN50_statistic.pl, define_clusters_by_cutting_tree.pl, extract_supertranscript_from_reference.py, filter_low_expr_transcripts.pl, get_Trinity_gene_to_trans_map.pl, insilico_read_normalization.pl, oases, oases_pipeline.py, retrieve_sequences_from_fasta.pl, run_DE_analysis.pl, run_DE_analysis_from_samples_file.pl, seqtk-trinity, sift_bam_max_cov.pl, salmon, STAR, STARlong, velvetg, velveth, giffilter, gifsponge, bowtie-align-l, bowtie-align-s, bowtie-build-l |
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GITHUB
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quay.io/biocontainers/disco |
shpc-registry automated BioContainers addition for disco |
buildG, buildG-MPI, buildG-MPIRMA, disco.cfg, disco_2.cfg, disco_3.cfg, fido2-assert, fido2-cred, fido2-token, fullsimplify, parsimplify, runAssembly-MPI.sh, runAssembly.sh, runDisco-MPI-ALPS.sh, runDisco-MPI-AllineaMAP.sh, runDisco-MPI-SLURM.sh, runDisco-MPI.sh, runDisco.sh, runECC.sh, scp, sftp, ssh, ssh-add, ssh-agent, ssh-keygen, ssh-keyscan, sshd, kmutate.sh, runhmm.sh, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, sketchblacklist2.sh |
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GITHUB
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quay.io/biocontainers/discosnp |
shpc-registry automated BioContainers addition for discosnp |
SRC_counter, SRC_linker_ram, dbgh5, dsk, dsk2ascii, extract_reads_from_bv, generate_bv, kissnp2, kissreads2, quick_hierarchical_clustering, read_file_names, run_discoSnp++.sh, run_discoSnp++_ML.sh, run_discoSnpRad.sh, short_read_connector.sh, qualfa2fq.pl, xa2multi.pl, bwa, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config, h5cc |
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GITHUB
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quay.io/biocontainers/dist_est |
singularity registry hpc automated addition for dist_est |
dist_est |
|
GITHUB
|
quay.io/biocontainers/distle |
singularity registry hpc automated addition for distle |
distle |
|
GITHUB
|
quay.io/biocontainers/disty |
shpc-registry automated BioContainers addition for disty |
disty |
|
GITHUB
|
quay.io/biocontainers/ditasic |
shpc-registry automated BioContainers addition for ditasic |
ditasic, ditasic_mapping.py, ditasic_matrix.py, kallisto, mason_frag_sequencing, mason_genome, mason_materializer, mason_methylation, mason_simulator, mason_splicing, mason_variator, f2py3.9, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug |
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GITHUB
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quay.io/biocontainers/divvier |
shpc-registry automated BioContainers addition for divvier |
divvier |
|
GITHUB
|
quay.io/biocontainers/dkfz-bias-filter |
shpc-registry automated BioContainers addition for dkfz-bias-filter |
dkfzbiasfilter.py, dkfzbiasfilter_summarize.py, qhelpconverter, f2py2, f2py2.7, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner, repc |
|
GITHUB
|
quay.io/biocontainers/dlcpar |
shpc-registry automated BioContainers addition for dlcpar |
dlcoal_to_dlcpar, dlcpar, dlcpar_search, dlcpar_to_dlcoal, tree-events-dlc, tree-events-dlcpar, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/dligand2 |
shpc-registry automated BioContainers addition for dligand2 |
dligand2 |
|
GITHUB
|
quay.io/biocontainers/dmbiolib |
singularity registry hpc automated addition for dmbiolib |
f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/dmox |
singularity registry hpc automated addition for dmox |
dmox |
|
GITHUB
|
quay.io/biocontainers/dms |
shpc-registry automated BioContainers addition for dms |
MS-comp-taxa, MS-comp-taxa-dynamic, MS-make-ref, MS-single-to-table, MS-table-to-single |
|
GITHUB
|
quay.io/biocontainers/dmtools |
singularity registry hpc automated addition for dmtools |
bam2dm, dmDMR, dmalign, dmtools, genome2cg, genomebinLen, annot-tsv, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/dna-nn |
singularity registry hpc automated addition for dna-nn |
dna-brnn, dna-cnn, gen-fq, parse-rm.js, k8 |
|
GITHUB
|
quay.io/biocontainers/dna_features_viewer |
shpc-registry automated BioContainers addition for dna_features_viewer |
fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp |
|
GITHUB
|
quay.io/biocontainers/dnaapler |
singularity registry hpc automated addition for dnaapler |
dnaapler, pyrodigal, test_pcre, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl, sort-table, spdi2tbl, split-at-intron, tbl2xml, transmute.Linux |
|
GITHUB
|
quay.io/biocontainers/dnabot |
shpc-registry automated BioContainers addition for dnabot |
miniterm.py, jsonschema, f2py3.8, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/dnacauldron |
singularity registry hpc automated addition for dnacauldron |
dnacauldron, html2text, runxlrd.py, fonttools, pyftmerge, pyftsubset, ttx, tqdm, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, gif2rgb, gifbuild, gifclrmp, giffix |
|
GITHUB
|
quay.io/biocontainers/dnachisel |
shpc-registry automated BioContainers addition for dnachisel |
dnachisel, tqdm, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/dnaio |
shpc-registry automated BioContainers addition for dnaio |
igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, 2to3-3.9, idle3.9, pydoc3.9, python3.9 |
|
GITHUB
|
quay.io/biocontainers/dnamarkmaker |
singularity registry hpc automated addition for dnamarkmaker |
DNAMarkMaker, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim |
|
GITHUB
|
quay.io/biocontainers/dnapi |
shpc-registry automated BioContainers addition for dnapi |
dnapi.py, qual_offset.py, qual_trim.py, to_fasta.py, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/dnarrange |
shpc-registry automated BioContainers addition for dnarrange |
dnarrange, dnarrange-genes, dnarrange-link, dnarrange-merge, fasta-nr, fastq-interleave, lamassemble, last-dotplot, last-map-probs, last-merge-batches, last-multiplot, last-pair-probs, last-postmask, last-split, last-split5, last-train, lastal, lastal5, lastdb, lastdb5, maf-convert, maf-cut, maf-join, maf-sort, maf-swap, parallel-fasta, parallel-fastq, parsort, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns |
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GITHUB
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quay.io/biocontainers/dnaweaver |
shpc-registry automated BioContainers addition for dnaweaver |
dnachisel, weasyprint, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides |
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GITHUB
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quay.io/biocontainers/dnaweaver_synbiocad |
shpc-registry automated BioContainers addition for dnaweaver_synbiocad |
dnachisel, weasyprint, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod |
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GITHUB
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quay.io/biocontainers/dnmtools |
singularity registry hpc automated addition for dnmtools |
dnmtools, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/dnoise |
singularity registry hpc automated addition for dnoise |
dnoise, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tqdm, python3.1 |
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GITHUB
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quay.io/biocontainers/dnp-binstrings |
shpc-registry automated BioContainers addition for dnp-binstrings |
dnp-binstrings |
|
GITHUB
|
quay.io/biocontainers/dnp-corrprofile |
shpc-registry automated BioContainers addition for dnp-corrprofile |
dnp-corrprofile |
|
GITHUB
|
quay.io/biocontainers/dnp-diprofile |
shpc-registry automated BioContainers addition for dnp-diprofile |
dnp-diprofile |
|
GITHUB
|
quay.io/biocontainers/dnp-fourier |
shpc-registry automated BioContainers addition for dnp-fourier |
dnp-fourier |
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GITHUB
|
quay.io/biocontainers/dnp-mapping |
shpc-registry automated BioContainers addition for dnp-mapping |
dnp-mapping |
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GITHUB
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quay.io/biocontainers/docking_py |
shpc-registry automated BioContainers addition for docking_py |
adt, archosv, cadd, docking_py, mglenv.csh, mglenv.sh, pdb2pqr_cli, pmv, prepare_ligand4.py, prepare_receptor4.py, python2.5, python2.5-config, pythonsh, qvina2, qvina2_split, qvinaw, qvinaw_split, smina, tester, vina, vina_split, vision, pilconvert.py, pildriver.py, pilfile.py, pilfont.py, pilprint.py, f2py3.8, idle, python-config, smtpd.py, 2to3-3.8 |
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GITHUB
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quay.io/biocontainers/dockq |
singularity registry hpc automated addition for dockq |
DockQ, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tqdm |
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GITHUB
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quay.io/biocontainers/dodge |
singularity registry hpc automated addition for dodge |
dodge, dodgedists, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/doebase |
shpc-registry automated BioContainers addition for doebase |
|
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GITHUB
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quay.io/biocontainers/doit |
shpc-registry automated BioContainers addition for doit |
doit, smtpd.pyc, easy_install-2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5 |
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GITHUB
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quay.io/biocontainers/domclust |
shpc-registry automated BioContainers addition for domclust |
addtit.pl, blast2homfile.pl, cmpr.pl, convgraph.pl, domclust, fasta2genefile.pl, perl5.22.2, c2ph, pstruct, podselect |
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GITHUB
|
quay.io/biocontainers/dominate |
shpc-registry automated BioContainers addition for dominate |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
|
quay.io/biocontainers/domino |
shpc-registry automated BioContainers addition for domino |
community, domino, pybind11-config, slicer, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
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quay.io/biocontainers/dosage_score |
singularity registry hpc automated addition for dosage_score |
dosage_score, dosage_score_plot, annot-tsv, fasta-sanitize.pl, plot-ampliconstats, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl |
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GITHUB
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quay.io/biocontainers/doubletd |
shpc-registry automated BioContainers addition for doubletd |
doubletd, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/doubletdetection |
singularity registry hpc automated addition for doubletdetection |
qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, igraph, h5tools_test_utils, scanpy, numpy-config, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics |
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GITHUB
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quay.io/biocontainers/downpore |
shpc-registry automated BioContainers addition for downpore |
downpore |
|
GITHUB
|
quay.io/biocontainers/dr-disco |
shpc-registry automated BioContainers addition for dr-disco |
chimerascan-exclude-transcriptome-events, chimerascan-relative-bedpe-to-CG, defuse-clusters-to-CG, dr-disco, fuma, fuma-gencode-gtf-to-bed, fuma-list-to-boolean-list, fusioncatcher-to-CG, htseq-count, htseq-qa, easy_install-2.7, qhelpconverter, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools |
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GITHUB
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quay.io/biocontainers/dragmap |
shpc-registry automated BioContainers addition for dragmap |
dragen-os, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/dragonflye |
shpc-registry automated BioContainers addition for dragonflye |
assembly-scan, check_compression, compress_fast5, demux_fast5, dragonflye, fast5_subset, flye, flye-minimap2, flye-modules, flye-samtools, hdf2tf.py, medaka, medaka_consensus, medaka_counts, medaka_data_path, medaka_haploid_variant, medaka_version_report, mini_align, miniasm, minidot, multi_to_single_fast5, nanoq, porechop, rasusa, raven, single_to_multi_fast5, whatshap, fastp, pilon, minimap2.py, samclip, any2fasta, kmc, kmc_dump, kmc_tools, racon, rampler |
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GITHUB
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quay.io/biocontainers/dram |
shpc-registry automated BioContainers addition for dram |
DRAM-setup.py, DRAM-v.py, DRAM.py, EukHighConfidenceFilter, covels-SE, coves-SE, eufindtRNA, fasta2gsi, sstofa, tRNAscan-SE, tRNAscan-SE.conf, trnascan-1.4, jemalloc-config, jeprof, jemalloc.sh, erb, gem, irb, rake, rdoc, ri, ruby |
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GITHUB
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quay.io/biocontainers/drax |
shpc-registry automated BioContainers addition for drax |
addTaxonNames, bbmergegapped.sh, bbqc.sh, convertNR, convert_mar_to_kaiju.py, drax, gbk2faa.pl, groot, kaiju, kaiju2krona, kaijuReport, kaijup, kaijux, makeDB.sh, mergeOutputs, metacherchant.sh, mkbwt, mkfmi, nextflow, normandcorrectwrapper.sh, taxonlist.tsv, multiqc, fastp, ktClassifyBLAST, ktGetContigMagnitudes, ktGetLCA, ktGetLibPath, ktGetTaxIDFromAcc, ktGetTaxInfo, ktImportBLAST, ktImportDiskUsage |
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GITHUB
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quay.io/biocontainers/dreamtools |
shpc-registry automated BioContainers addition for dreamtools |
dreamtools, dreamtools-layout, dreamtools-scoring, synapse, easydev_buildPackage, ibrowse, multigit, browse, runxlrd.py, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel |
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GITHUB
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quay.io/biocontainers/drep |
shpc-registry automated BioContainers addition for drep |
ScaffoldLevel_dRep.py, dRep, delta2vcf, parse_stb.py, fastANI, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, combineMUMs, delta-filter, dnadiff, exact-tandems |
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GITHUB
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quay.io/biocontainers/drive |
shpc-registry automated BioContainers addition for drive |
drive |
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GITHUB
|
quay.io/biocontainers/drop |
shpc-registry automated BioContainers addition for drop |
drop, git2_cli, wbuild, gatk, STAR, STARlong, plac_runner.py, yte, bc, dc, docutils, pulptest, gff2gff.py |
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GITHUB
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quay.io/biocontainers/dropbox |
shpc-registry automated BioContainers addition for dropbox |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/dropest |
shpc-registry automated BioContainers addition for dropest |
dropReport.Rsc, dropest, droptag, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/dropkick |
singularity registry hpc automated addition for dropkick |
SvtAv1DecApp, SvtAv1EncApp, dav1d, dropkick, h5tools_test_utils, rav1e, tiff2fsspec, aomdec, aomenc, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, imageio_download_bin, imageio_remove_bin, skivi, h5fuse.sh, scanpy, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff |
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GITHUB
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quay.io/biocontainers/dropletutils-scripts |
shpc-registry automated BioContainers addition for dropletutils-scripts |
dropletutils-barcoderanks.R, dropletutils-downsample-matrix.R, dropletutils-empty-drops.R, dropletutils-make-test-sdrf.R, dropletutils-read-10x-counts.R, dropletutils-scripts-post-install-tests.bats, dropletutils-scripts-post-install-tests.sh, build_env_setup.sh, conda_build.sh, x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/dropseq_tools |
shpc-registry automated BioContainers addition for dropseq_tools |
BamTagHistogram, BamTagOfTagCounts, BaseDistributionAtReadPosition, CensusSeq, CollapseBarcodesInPlace, CollapseTagWithContext, CompareDropSeqAlignments, ConvertToRefFlat, CountUnmatchedSampleIndices, CreateIntervalsFiles, CsiAnalysis, DetectBeadSubstitutionErrors, DetectBeadSynthesisErrors, DigitalExpression, FilterBam, FilterBamByTag, FilterGtf, GatherGeneGCLength, GatherMolecularBarcodeDistributionByGene, GatherReadQualityMetrics, MaskReferenceSequence, MergeDgeSparse, PolyATrimmer, ReduceGtf, RollCall, SelectCellsByNumTranscripts, SingleCellRnaSeqMetricsCollector, SplitBamByCell, TagBamWithReadSequenceExtended, TagReadWithGeneExonFunction, TagReadWithGeneFunction, TagReadWithInterval, TrimStartingSequence, ValidateReference, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/drprg |
singularity registry hpc automated addition for drprg |
drprg, make_prg, pandora, gff2gff.py, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns, mafft-fftnsi, mafft-ginsi, mafft-homologs.rb, mafft-linsi, mafft-nwns, mafft-nwnsi, mafft-profile, mafft-qinsi, mafft-xinsi, nwns, nwnsi, mafft, guess-ploidy.py, plot-roh.py, run-roh.pl |
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GITHUB
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quay.io/biocontainers/drtransformer |
singularity registry hpc automated addition for drtransformer |
DrPlotter, DrTransformer, RNAmultifold, flit, RNAdos, docutils, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex, RNAsnoop, RNAfold, Kinfold, RNALfold, RNAaliduplex, RNAalifold, RNAcofold, RNAdistance, RNAduplex, RNAeval |
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GITHUB
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quay.io/biocontainers/drug2cell |
singularity registry hpc automated addition for drug2cell |
qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, h5tools_test_utils, h5fuse.sh, h5delete, natsort, tqdm, fonttools, pyftmerge, pyftsubset, ttx, brotli, tjbench, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy |
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GITHUB
|
quay.io/biocontainers/dscr |
shpc-registry automated BioContainers addition for dscr |
dsrc, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/dsh-bio |
shpc-registry automated BioContainers addition for dsh-bio |
dsh-bio, dsh-compress-bed, dsh-compress-fasta, dsh-compress-fastq, dsh-compress-gaf, dsh-compress-gfa1, dsh-compress-gfa2, dsh-compress-gff3, dsh-compress-paf, dsh-compress-rgfa, dsh-compress-sam, dsh-compress-vcf, dsh-create-sequence-dictionary, dsh-disinterleave-fastq, dsh-downsample-fastq, dsh-downsample-interleaved-fastq, dsh-export-segments, dsh-extract-fastq, dsh-extract-fastq-by-length, dsh-fasta-to-fastq, dsh-fastq-description, dsh-fastq-sequence-length, dsh-fastq-to-bam, dsh-fastq-to-fasta, dsh-fastq-to-text, dsh-filter-bed, dsh-filter-fasta, dsh-filter-fastq, dsh-filter-gaf, dsh-filter-gfa1, dsh-filter-gfa2, dsh-filter-gff3, dsh-filter-paf, dsh-filter-rgfa, dsh-filter-sam, dsh-filter-vcf, dsh-gfa1-to-gfa2, dsh-identify-gfa1, dsh-interleave-fastq, dsh-interleaved-fastq-to-bam, dsh-links-to-cytoscape-edges, dsh-links-to-property-graph, dsh-list-filesystems, dsh-reassemble-paths, dsh-remap-dbsnp, dsh-remap-phase-set, dsh-rename-bed-references, dsh-rename-gff3-references, dsh-rename-vcf-references, dsh-segments-to-cytoscape-nodes, dsh-segments-to-property-graph, dsh-split-bed, dsh-split-fasta, dsh-split-fastq, dsh-split-gaf, dsh-split-gff3, dsh-split-interleaved-fastq, dsh-split-paf, dsh-split-sam, dsh-split-vcf, dsh-text-to-fastq, dsh-traversals-to-cytoscape-edges, dsh-traversals-to-property-graph, dsh-traverse-paths, dsh-truncate-fasta, dsh-truncate-paths, dsh-variant-table-to-vcf, dsh-vcf-header, dsh-vcf-pedigree, dsh-vcf-samples, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink |
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GITHUB
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quay.io/biocontainers/dsk |
shpc-registry automated BioContainers addition for dsk |
dsk, dsk2ascii, h5cc |
|
GITHUB
|
quay.io/biocontainers/dsrc |
shpc-registry automated BioContainers addition for dsrc |
dsrc |
|
GITHUB
|
quay.io/biocontainers/dudes |
shpc-registry automated BioContainers addition for dudes |
DUDes.py, DUDesDB.py, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/duet |
shpc-registry automated BioContainers addition for duet |
clair3.py, cuteSV, duet, libclair3.c, libclair3.o, longphase, ngmlr, pypy, pypy3, pypy3.6, run_clair3.sh, svim, whatshap, gdbm_dump, gdbm_load, gdbmtool, estimator_ckpt_converter, google-oauthlib-tool, igzip, tf_upgrade_v2, pbunzip2, pbzcat, pbzip2 |
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GITHUB
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quay.io/biocontainers/dunovo |
shpc-registry automated BioContainers addition for dunovo |
align-families.py, baralign.sh, bash, bashbug, consensus.py, correct.py, dunovo.py, dunovo_parsers.py, file, gunzip, gzexe, gzip, loeb-2.0.sh, make-barcodes.awk, make-consensi.py, make-families.sh, parallel_tools.py, precheck.py, safety-not-guaranteed.py, seqtools.py, shims.py, trimmer.py, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zless, zmore, znew, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect, gawk-5.1.0 |
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GITHUB
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quay.io/biocontainers/duphold |
shpc-registry automated BioContainers addition for duphold |
duphold, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/duplex-tools |
singularity registry hpc automated addition for duplex-tools |
duplex_tools, pyfastx, natsort, tqdm, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
|
quay.io/biocontainers/duplomap |
shpc-registry automated BioContainers addition for duplomap |
duplomap, duplomap-prepare, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa |
|
GITHUB
|
quay.io/biocontainers/dupre |
shpc-registry automated BioContainers addition for dupre |
bam2occupancy, dupre, pulpdoctest, pulptest, f2py3.6, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, 2to3-3.6 |
|
GITHUB
|
quay.io/biocontainers/dupsifter |
singularity registry hpc automated addition for dupsifter |
dupsifter |
|
GITHUB
|
quay.io/biocontainers/dvorfs |
shpc-registry automated BioContainers addition for dvorfs |
dba, dnal, dvorfs, estwise, estwisedb, genewise, genewisedb, hmmalign2, hmmbuild2, hmmcalibrate2, hmmconvert2, hmmemit2, hmmfetch2, hmmindex2, hmmpfam2, hmmsearch2, process-genewise, promoterwise, psw, pswdb, scanwise, scanwise_server, _bdftogd, _gd2copypal, _gd2togif, _gd2topng, _gdcmpgif, _gdparttopng, _gdtopng, _giftogd2, _pngtogd, _pngtogd2 |
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GITHUB
|
quay.io/biocontainers/dwgsim |
shpc-registry automated BioContainers addition for dwgsim |
dwgsim, dwgsim_eval |
|
GITHUB
|
quay.io/biocontainers/dx-cwl |
shpc-registry automated BioContainers addition for dx-cwl |
bagit.py, dx, dx-app-wizard, dx-build-app, dx-build-applet, dx-clone-asset, dx-cwl, dx-docker, dx-download-all-inputs, dx-fetch-bundled-depends, dx-generate-dxapp, dx-jobutil-add-output, dx-jobutil-dxlink, dx-jobutil-new-job, dx-jobutil-parse-link, dx-jobutil-report-error, dx-log-stream, dx-mount-all-inputs, dx-notebook-reconnect, dx-print-bash-vars, dx-upload-all-outputs, prov-compare, prov-convert, wsdump.py, xattr, cwltool, schema-salad-doc, schema-salad-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, doesitcache, activate-global-python-argcomplete |
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GITHUB
|
quay.io/biocontainers/dxpy |
shpc-registry automated BioContainers addition for dxpy |
dx, dx-app-wizard, dx-build-app, dx-build-applet, dx-clone-asset, dx-docker, dx-download-all-inputs, dx-fetch-bundled-depends, dx-generate-dxapp, dx-jobutil-add-output, dx-jobutil-dxlink, dx-jobutil-new-job, dx-jobutil-parse-link, dx-jobutil-report-error, dx-log-stream, dx-mount-all-inputs, dx-notebook-reconnect, dx-print-bash-vars, dx-upload-all-outputs, wsdump, xattr, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/dxua |
shpc-registry automated BioContainers addition for dxua |
dxua |
|
GITHUB
|
quay.io/biocontainers/dysgu |
singularity registry hpc automated addition for dysgu |
dysgu, cygdb, cython, cythonize, normalizer, f2py3.10, htsfile, bgzip, tabix, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/e-pcr |
shpc-registry automated BioContainers addition for e-pcr |
e-PCR, fahash, famap, re-PCR |
|
GITHUB
|
quay.io/biocontainers/ea-utils |
shpc-registry automated BioContainers addition for ea-utils |
alc, determine-phred, fastq-clipper, fastq-join, fastq-mcf, fastq-multx, fastq-stats, fastx-graph, randomFQ, sam-stats, varcall |
|
GITHUB
|
quay.io/biocontainers/eagle |
shpc-registry automated BioContainers addition for eagle |
eagle, sqt, cyvcf2, cutadapt, flask, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py |
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GITHUB
|
quay.io/biocontainers/eagle2 |
singularity registry hpc automated addition for eagle2 |
eagle, annot-tsv, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/earlgrey |
singularity registry hpc automated addition for earlgrey |
BuildDatabase, LAI, LTRPipeline, LTR_retriever, LTR_retriever.py, Linup, Ninja, RM2Bed.py, Refiner, RepeatClassifier, RepeatMasker.py, RepeatModeler, RepeatScout, TEsorter, TEsorter-test, alignAndCallConsensus.pl, bigRmskAlignBed.as, bigRmskBed.as, buildRMLibFromEMBL.pl, buildSummary.pl, build_lmer_table, combineRMFiles.pl, compare-out-to-gff.prl, concatenate_domains.py, convert_MGEScan3.0.pl, convert_ltr_struc.pl, convert_ltrdetector.pl, earlGrey, edgeredef, eledef, eleredef, famdef, filter-stage-1.prl, filter-stage-2.prl, generateSeedAlignments.pl, genometools-config, get_record.py, gt, imagespread, makeclusterdb, maskFile.pl, merge-lmer-tables.prl, mreps, nmerge, nseg, ppserver.py, renumberRMFiles.pl, rmToTrackHub.pl, sa-ssr, viewMSA.pl, wublastToCrossmatch.pl, DupMasker, ProcessRepeats, RepeatMasker, RepeatProteinMask, calcDivergenceFromAlign.pl, createRepeatLandscape.pl, dupliconToSVG.pl, getRepeatMaskerBatch.pl, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, trfMask, rmblastn, blastn_vdb, tblastn_vdb, blast_report, blastdb_convert, blastdb_path, trf4.10.0-rc.2.linux64.exe, trf, twoBitToFa, twoBitInfo, faToTwoBit, FET.pl, cd-hit-clstr_2_blm8.pl |
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GITHUB
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quay.io/biocontainers/easel |
shpc-registry automated BioContainers addition for easel |
easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct |
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GITHUB
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quay.io/biocontainers/eastr |
singularity registry hpc automated addition for eastr |
eastr, minimap2.py, annot-tsv, numpy-config, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl |
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GITHUB
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quay.io/biocontainers/easydev |
shpc-registry automated BioContainers addition for easydev |
easydev_buildPackage, ibrowse, multigit, browse, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m |
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GITHUB
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quay.io/biocontainers/easypqp |
shpc-registry automated BioContainers addition for easypqp |
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GITHUB
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quay.io/biocontainers/ebcsgen |
shpc-registry automated BioContainers addition for ebcsgen |
isympy, x86_64-conda_cos7-linux-gnu-ld, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/ebfilter |
shpc-registry automated BioContainers addition for ebfilter |
EBFilter, vcf_sample_filter.py, vcf_filter.py, vcf_melt, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
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GITHUB
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quay.io/biocontainers/ebi-eva-common-pyutils |
singularity registry hpc automated addition for ebi-eva-common-pyutils |
archive_directory.py, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, xslt-config, xsltproc, normalizer |
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GITHUB
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quay.io/biocontainers/ebisearch |
shpc-registry automated BioContainers addition for ebisearch |
ebi_metagenomics, ebisearch, flake8, pycodestyle, pyflakes, chardetect, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/ebolaseq |
singularity registry hpc automated addition for ebolaseq |
ebolaseq, gawk-5.3.1, readal, statal, trimal, iqtree2, iqtree, gawkbug, idle3.13, pydoc3.13, python3.13, python3.13-config, mafft-sparsecore.rb, awk, einsi, fftns, fftnsi, gawk, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns, mafft-fftnsi, mafft-ginsi, mafft-homologs.rb, mafft-linsi |
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GITHUB
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quay.io/biocontainers/echidna |
singularity registry hpc automated addition for echidna |
protoc-28.2.0, torchfrtrace, torch_shm_manager, isympy, torchrun, igraph, convert-caffe2-to-onnx, convert-onnx-to-caffe2, scanpy, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, h5tools_test_utils, h5fuse.sh, numpy-config, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info |
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GITHUB
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quay.io/biocontainers/ecmwfapi |
shpc-registry automated BioContainers addition for ecmwfapi |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/ecopcr |
shpc-registry automated BioContainers addition for ecopcr |
ecoPCR, ecoPCRFilter.py, ecoPCRFormat.py, ecoSort.py, ecofind, ecogrep, createfontdatachunk.py, enhancer.py, explode.py, gifmaker.py, painter.py, player.py, thresholder.py, viewer.py, pilconvert.py, pildriver.py |
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GITHUB
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quay.io/biocontainers/ecoprimers |
shpc-registry automated BioContainers addition for ecoprimers |
ecoPrimers |
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GITHUB
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quay.io/biocontainers/ecopy |
shpc-registry automated BioContainers addition for ecopy |
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GITHUB
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quay.io/biocontainers/ectyper |
shpc-registry automated BioContainers addition for ectyper |
ectyper, capnp, capnpc, capnpc-c++, capnpc-capnp, gff2gff.py, mash, seqtk, CA.pm, cacert.pem, index-themes |
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GITHUB
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quay.io/biocontainers/edd |
shpc-registry automated BioContainers addition for edd |
edd, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, gff2gff.py, guess-ploidy.py |
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GITHUB
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quay.io/biocontainers/eden |
shpc-registry automated BioContainers addition for eden |
RNAshapes, dsdp5, location_predictor, model, motif, motif_display.py, obfitall, obmm, transformseq, weblogo, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize |
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GITHUB
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quay.io/biocontainers/edena |
shpc-registry automated BioContainers addition for edena |
edena |
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GITHUB
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quay.io/biocontainers/editdistance |
shpc-registry automated BioContainers addition for editdistance |
2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5, wish8.5 |
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GITHUB
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quay.io/biocontainers/edittag |
shpc-registry automated BioContainers addition for edittag |
add_tags_to_adapters.py, add_tags_to_primers.py, design_edit_metric_tags.py, estimate_sequencing_error_effects.py, get_tag_flows_for_454.py, validate_edit_metric_tags.py, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/edlib |
shpc-registry automated BioContainers addition for edlib |
edlib-aligner |
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GITHUB
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quay.io/biocontainers/edta |
shpc-registry automated BioContainers addition for edta |
BuildDatabase, DateRepeats, DupMasker, EDTA.pl, EDTA_processI.pl, EDTA_raw.pl, LAI, LTRPipeline, LTR_retriever, LTR_retriever.py, Linup, Ninja, ProcessRepeats, RM2Bed.py, Refiner, RepeatClassifier, RepeatMasker, RepeatMasker.py, RepeatModeler, RepeatProteinMask, RepeatScout, TEsorter, TEsorter-test, alignAndCallConsensus.pl, buildRMLibFromEMBL.pl, buildSummary.pl, build_lmer_table, calcDivergenceFromAlign.pl, check_result.pl, compare-out-to-gff.prl, concatenate_domains.py, convert_MGEScan3.0.pl, convert_ltr_struc.pl, convert_ltrdetector.pl, createRepeatLandscape.pl, down_tRNA.pl, dupliconToSVG.pl, edgeredef, eledef, eleredef, famdef, filter-stage-1.prl, filter-stage-2.prl, filter_rt.pl, generateSeedAlignments.pl, genome_plot.pl, genome_plot2.pl, genome_plot_svg.pl, genometools-config, getRepeatMaskerBatch.pl, get_record.py, grf-alignment, grf-alignment2, grf-dbn, grf-filter, grf-intersperse, grf-main, grf-mite-cluster, grf-nest, gt, imagespread, lib-test.pl, ltr_finder, maskFile.pl, mdust, merge-lmer-tables.prl, nmerge, nseg, ppserver.py, psearch, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, trfMask, viewMSA.pl, wublastToCrossmatch.pl, rmblastn, trf4.10.0-rc.2.linux64.exe, trf, twoBitToFa, blast_report, blastdb_convert, blastdb_path, twoBitInfo, faToTwoBit, theano-cache |
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GITHUB
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quay.io/biocontainers/effectivet3 |
shpc-registry automated BioContainers addition for effectivet3 |
effectivet3, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, extcheck |
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GITHUB
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quay.io/biocontainers/efishent |
singularity registry hpc automated addition for efishent |
AccessFold, AllSub, CircleCompare, CycleFold, DuplexFold, DuplexFold-smp, DynalignDotPlot, EDcalculator, EDcalculator-smp, ETEcalculator, ETEcalculator-smp, EnergyPlot, EnsembleEnergy, Fold, Fold-smp, MaxExpect, MaxExpect-smp, NAPSS, OligoWalk, PARTS, ProbKnot, ProbKnot-smp, ProbScan, ProbabilityPlot, ProbablePair, ProbablePair-smp, RemovePseudoknots, RemovePseudoknots-smp, Rsample, Rsample-smp, ShapeKnots, ShapeKnots-smp, StructureProb, StructureProb-smp, SymmetryTester, TurboFold, TurboFold-smp, TurboHomology, bifold, bifold-smp, bipartition, bipartition-smp, csv-import, ct2dot, design, dot2ct, draw, dynalign, dynalign-smp, dynalign_ii, dynalign_ii-smp, eFISHent, efishent, efn2, efn2-smp, luigi, luigi-deps, luigi-deps-tree, luigi-grep, luigid, multilign, multilign-smp, oligoscreen, oligoscreen-smp, orc-memory, orc-scan, orega, orega-smp, partition, partition-smp, phmm, pyomo, refold, scorer, stochastic, stochastic-smp, timezone-dump, validate, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, docutils, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect, edirect.py |
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GITHUB
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quay.io/biocontainers/ega-cryptor |
singularity registry hpc automated addition for ega-cryptor |
ega-cryptor, idle3.13, pydoc3.13, python3.13, python3.13-config, cups-config, ippeveprinter, ipptool, jaotc, hb-info, jfr, jjs, pack200, rmic, rmid, unpack200, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, tjbench, jdeps, jar |
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GITHUB
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quay.io/biocontainers/ega2 |
shpc-registry automated BioContainers addition for ega2 |
ega2, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/egap |
singularity registry hpc automated addition for egap |
Bifrost, EGAP, MasurcaCelera.pm, MasurcaCommon.pm, MasurcaConf.pm, MasurcaPaths.pm, MasurcaSoap.pm, MasurcaSuperReads.pm, NanoPlot, Ratatosk, SOAPdenovo-127mer, SOAPdenovo-63mer, abi-dump.3, abi-dump.3.2.0, abyss-rresolver-short, addSurrogatesToFrgCtgFile, addSurrogatesToFrgctg.perl, add_missing_mates.pl, add_pb_seq.pl, align-info.3, align-info.3.2.0, bbcrisprfinder.sh, bbsort.sh, blast_self_alignment_filter.pl, bloom_query, break_contigs.pl, build_human_reference.sh, cache-mgr.3, cache-mgr.3.2.0, calcuts, cat.sh, ccs, ccs-alt, cg2illumina.sh, check-corrupt, check-corrupt.3, check-corrupt.3.2.0, checkstrand.sh, chromosome_scaffolder.sh, classify_reads.pl, closeGaps.oneDirectory.fromMinKmerLen.perl, closeGaps.oneDirectory.perl, closeGaps.perl, closeGapsInScaffFastaFile.perl, closeGapsLocally.perl, close_gaps.sh, close_scaffold_gaps.sh, collectReadSequencesForLocalGapClosing, comparelabels.sh, compleasm, compute_contig_positions.pl, compute_coverage.pl, compute_sr_cov.pl, compute_sr_cov.revisedForGCContig.pl, copyfile.sh, correct_with_k_unitigs.sh, correct_with_k_unitigs_fast.pl, countbarcodes2.sh, countduplicates.sh, createFastaSuperReadSequences, createKUnitigMaxOverlaps, createSuperReadSequenceAndPlacementFileFromCombined.perl, createSuperReadsForDirectory.perl, create_end_pairs.perl, create_end_pairs.pl, create_k_unitigs_large_k, create_k_unitigs_large_k2, create_mega_reads, create_merged_mega-reads.pl, create_merged_sequences.pl, create_sr_frg, create_sr_frg.pl, dataformat, datasets, deduplicate_contigs.sh, deduplicate_unitigs.sh, demuxserver.sh, determineUnjoinablePacbioSubmegas.perl, eliminateBadSuperReadsUsingList, error_corrected2frg, evaluate_splits.pl, expand_fastq, extendSuperReadsBasedOnUniqueExtensions, extendSuperReadsForUniqueKmerNeighbors, extractJoinableAndNextPassReadsFromJoinKUnitigs.perl, extract_merges.pl, extract_merges_mega-reads.pl, extract_unique_mega-reads.pl, extract_unjoined_pairs.pl, extractreads.pl, extractreads_not.pl, fadvise, fasta2frg.pl, fasta2frg_m.pl, fasta_make_Nbase_bed.pl, fasterq-dump-orig.3.2.0, fasterq-dump.3, fasterq-dump.3.2.0, fastq-dump-orig.3.2.0, fastq-dump.3, fastq-dump.3.2.0, fastqToFasta.pl, fill_unaligned_gaps.pl, filter_alt.pl, filter_delta_file_for_qrys.pl, filter_library.sh, filter_overlap_file, filter_redundancy.pl, final_polish.sh, findGapsInCoverageOfPacbios, findMatchesBetweenKUnitigsAndReads, find_contained_reads.pl, find_repeats.pl, findrepeats.sh, fix_consensus_from_vcf.pl, fix_unitigs.sh, fragScaff.pl, fragScaff.sh, gawk-5.3.1, getATBiasInCoverageForIllumina_v2, getEndSequencesOfContigs.perl, getGCBiasStatistics.perl, getLengthStatisticsForKUnitigsFile.perl, getMeanAndStdevByGCCount.perl, getMeanAndStdevForGapsByGapNumUsingCeleraAsmFile.perl, getMeanAndStdevForGapsByGapNumUsingCeleraTerminatorDirectory.perl, getNumBasesPerReadInFastaFile.perl, getSequenceForClosedGaps.perl, getSequenceForLocallyClosedGaps.perl, getSuperReadInsertCountsFromReadPlacementFile, getSuperReadInsertCountsFromReadPlacementFileTwoPasses, getSuperReadPlacements.perl, getUnitigTypeFromAsmFile.perl, get_seqs, get_super_read_sizes, get_super_read_sizes.pl, gfatools, gradebins.sh, hifiasm, hist_plot.py, hmmeralign, hmmerbuild, homo_trim, illumina-dump.3, illumina-dump.3.2.0, indexlr, insert_repeats.pl, introduce_errors_fasta_file.pl, irqtop, jf_aligner, joinKUnitigs_v3, join_mega_reads_trim.onepass.nomatch.pl, join_mega_reads_trim.onepass.pl, join_mega_reads_trim.onepass.ref.pl, join_mega_reads_trim.onepass.rna.pl, kdbmeta.3, kdbmeta.3.2.0, killBadKUnitigs, longest_path, lrz, lsirq, makeAdjustmentFactorsForNumReadsForAStatBasedOnGC, makeAdjustmentFactorsForNumReadsForAStatBasedOnGC_v2, make_mate_frg.pl, make_mr_frg.pl, make_rejoin_links.pl, makequickbinvector.sh, masurca, masurca-superreads, mega_reads_assemble_cluster.sh, mega_reads_assemble_cluster2.sh, mega_reads_assemble_polish.sh, mega_reads_assemble_ref.sh, mergeSuperReadsUniquely.pl, merge_contigs.pl, merge_coords, merge_matches_and_tile_coords_file.pl, merge_matches_and_tile_coords_file_new.pl, merge_mate_pairs, merge_mega-reads.pl, merge_sequences_simple.pl, mi_bf_generate, miniprot, netfilter.sh, ngs-pileup, ngs-pileup.3, ngs-pileup.3.2.0, ngscstat, novademux.sh, nsenter, opal.jar, outputAlekseysJellyfishReductionFile.perl, outputJoinedPairs.perl, outputRecordsNotOnList, output_reconciled_scaffolds.pl, paf2gfa, parallel_delta-filter.sh, pbcstat, pd_config.py, picksubset.sh, pileup2.sh, pipesz, pl2bat.pl, plothist.sh, plotreadposition.sh, polca.sh, polish_with_illumina_assembly.sh, polyfilter.sh, prefetch-orig.3.2.0, prefetch.3, prefetch.3.2.0, prlimit, process_scaffold_gaps.pl, protoc-28.2.0, purge_dups, quickbin.sh, quorum, quorum_create_database, quorum_error_correct_reads, ragtag.py, ragtag_agp2fa.py, ragtag_agpcheck.py, ragtag_asmstats.py, ragtag_break_query.py, ragtag_correct.py, ragtag_create_links.py, ragtag_delta2paf.py, ragtag_merge.py, ragtag_paf2delta.py, ragtag_patch.py, ragtag_rename.py, ragtag_scaffold.py, ragtag_splitasm.py, ragtag_stats.py, ragtag_update_gff.py, randomreadsmg.sh, randseq, raxml, raxmlp, rbs, rcexplain.3, rcexplain.3.2.0, rdbg, recompute_astat_superreads.sh, recompute_astat_superreads_CA8.sh, reconcile_consensus.pl, reconcile_matches.pl, reconciliate_mega_reads.maximal.nucmer.pl, recover_scaffolds.pl, reduce_sr, reducecolumns.sh, ref-variation, ref-variation.3, ref-variation.3.2.0, refine.sh, refine_alignments.pl, rename_filter_fastq, rename_filter_fastq.pl, renamebymapping.sh, renamebysketch.sh, resolve_trio.sh, restore_ns.pl, reverse_complement, run-sepp.sh, runByDirectory, runSRCA.pl, run_ECR.sh, run_busco, run_busco2, run_kcm, run_pasta.py, run_pasta_gui.py, run_purge_dups.py, run_sepp.py, run_seqtools.py, run_upp.py, sam-dump-orig.3.2.0, sam-dump.3, sam-dump.3.2.0, samToDelta, samba.sh, sample_mate_pairs.pl, scoresequence.sh, seppJsonMerger.jar, seqtovec.sh, setup.py, sff-dump.3, sff-dump.3.2.0, sizesToScaff.pl, sorted_merge, spades-gfa-split, splitFileAtNs, splitFileByPrefix.pl, splitLongKUnitigs.pl, splitScaffoldsAtNs.pl, splitScaffoldsAtNs.sh, split_long_unitigs.pl, split_matches_file.pl, split_mate_pairs, split_reads_to_join.pl, split_sequences.py, sra-info, sra-info.3, sra-info.3.2.0, sra-pileup-orig.3.2.0, sra-pileup.3, sra-pileup.3.2.0, sra-search, sra-search.3, sra-search.3.2.0, sra-stat.3, sra-stat.3.2.0, srapath-orig.3.2.0, srapath.3, srapath.3.2.0, sratools.3, sratools.3.2.0, stats3.sh, sub.sh, syntax_suggest, tagandmerge.sh, test-sra.3, test-sra.3.2.0, tgsgapcloser, tiledump.sh, train.sh, translateReduceFile.perl, translate_reduced_reads.pl, treeshrink, trim_by_kunitigs.pl, trim_mega_reads.pl, trimcontigs.sh, typeprof, uclampset, ufasta, var-expand, var-expand.3, var-expand.3.2.0, vdb-config.3, vdb-config.3.2.0, vdb-decrypt.3, vdb-decrypt.3.2.0, vdb-dump-orig.3.2.0, vdb-dump.3, vdb-dump.3.2.0, vdb-encrypt.3, vdb-encrypt.3.2.0, vdb-validate.3, vdb-validate.3.2.0, yaggo, zipcloak, zipnote, zipsplit, bloomfilterparser.sh, checksum-profile, elastishadow, lrunzip, lrzcat, lrzip, lrztar, lrzuntar, abyss-stack-size, icarus.py, metaquast, metaquast.py, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, split_fa, coronaspades.py, metaplasmidspades.py, metaviralspades.py, rnaviralspades.py, scriptlive, Xcalcmem.sh |
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GITHUB
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quay.io/biocontainers/egglib |
shpc-registry automated BioContainers addition for egglib |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/eggnog-mapper |
shpc-registry automated BioContainers addition for eggnog-mapper |
create_dbs.py, download_eggnog_data.py, emapper.py, hmm_mapper.py, hmm_server.py, hmm_worker.py, mmseqs, vba_extract.py, gawk-5.1.0, awk, gawk, diamond, prodigal, hmmpgmd_shard, easel, esl-mixdchlet |
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GITHUB
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quay.io/biocontainers/eider |
singularity registry hpc automated addition for eider |
eider, jwebserver, jpackage, cups-config, ippeveprinter, ipptool, hb-info, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo |
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GITHUB
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quay.io/biocontainers/eigensoft |
shpc-registry automated BioContainers addition for eigensoft |
baseprog, convertf, eigenstrat, eigenstratQTL, mergeit, pca, pcatoy, smarteigenstrat, smartpca, smartrel, smshrink, twstats, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/eigenstratdatabasetools |
shpc-registry automated BioContainers addition for eigenstratdatabasetools |
eigenstrat_database_tools, eigenstrat_rename_snps, eigenstrat_snp_coverage, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/eklipse |
singularity registry hpc automated addition for eklipse |
J01415.2.gb, NC_005089.1.gb, NC_012920.1.gb, eKLIPse.py, eKLIPse_circos.py, eKLIPse_fct.py, eKLIPse_fig2.png, eKLIPse_init.py, eKLIPse_sc.py, eKLIPse_threading.py, eKLIPse_userGuide.pdf, eklipseHeader.png, eklipse_home.png, eklipse_results.png, eklipse_select.png, eklipse_waiting.png, pl2bat.pl, pybam.py, spinner.py, tabulate.py, test_illumina.bam, test_illumina.bam.bai, test_proton.bam, test_proton.bam.bai, circos, circos.exe, compile.bat, compile.make, gddiag, list.modules, test.modules, test_pcre, config_data, tjbench, bdf2gdfont.pl, f2py2, f2py2.7, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh |
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GITHUB
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quay.io/biocontainers/el_gato |
singularity registry hpc automated addition for el_gato |
el_gato.py, elgato_report.py, gfPcr, isPcr, run_el_gato.nf, jwebserver, gfServer, nextflow.bak, nextflow, blastn_vdb, tblastn_vdb, test_pcre, basenc, b2sum, ls, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date |
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GITHUB
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quay.io/biocontainers/elastic-blast |
shpc-registry automated BioContainers addition for elastic-blast |
aws, aws-create-elastic-blast-janitor-role.sh, aws-delete-elastic-blast-janitor-role.sh, aws-describe-elastic-blast-janitor-role.sh, aws-get-auto-scaling-events.sh, aws-show-my-undeleted-searches.sh, aws.cmd, aws_bash_completer, aws_completer, aws_zsh_completer.sh, awslimitchecker, blast-tuner.py, bq, cleanup-stale-gcp-resources.py, create-blastdb-metadata.py, docker-credential-gcloud, elastic-blast, elb-cost.py, fasta_split.py, gcloud, gcp-setup-elastic-blast-janitor.sh, gcp-show-my-undeleted-searches.sh, gcp_ram_size.py, kubectl, publish.py, results2clustername.sh, gsutil, jp.py, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, rst2html4.py, rst2html5.py |
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GITHUB
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quay.io/biocontainers/elasticluster |
shpc-registry automated BioContainers addition for elasticluster |
ansible, ansible-doc, ansible-galaxy, ansible-playbook, ansible-pull, ansible-vault, elasticluster, gflags2man.py, pyrsa-decrypt-bigfile, pyrsa-encrypt-bigfile, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin |
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GITHUB
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quay.io/biocontainers/elector |
shpc-registry automated BioContainers addition for elector |
Donatello, elector, fq2fa, masterSplitter, poa, simulator, sdust, paftools.js, minimap2, k8, f2py3.6, fasta-sanitize.pl, plot-ampliconstats, 2to3-3.6, idle3.6, pydoc3.6 |
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GITHUB
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quay.io/biocontainers/elprep |
shpc-registry automated BioContainers addition for elprep |
elprep |
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GITHUB
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quay.io/biocontainers/ema |
shpc-registry automated BioContainers addition for ema |
ema |
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GITHUB
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quay.io/biocontainers/embassy-phylip |
shpc-registry automated BioContainers addition for embassy-phylip |
_fclique, _fconsense, _fcontml, _fcontrast, _fdiscboot, _fdnacomp, _fdnadist, _fdnainvar, _fdnaml, _fdnamlk, _fdnamove, _fdnapars, _fdnapenny, _fdollop, _fdolmove, _fdolpenny, _fdrawgram, _fdrawtree, _ffactor, _ffitch, _ffreqboot, _fgendist, _fkitsch, _fmix, _fmove, _fneighbor, _fpars, _fpenny, _fproml, _fpromlk, _fprotdist, _fprotpars, _frestboot, _frestdist, _frestml, _fretree, _fseqboot, _fseqbootall, _ftreedist, _ftreedistpair, fclique, fconsense, fcontml, fcontrast, fdiscboot, fdnacomp, fdnadist, fdnainvar, fdnaml, fdnamlk, fdnamove, fdnapars, fdnapenny, fdollop, fdolmove, fdolpenny, fdrawgram, fdrawtree, ffactor, ffitch, ffreqboot, fgendist, fkitsch, fmix, fmove, fneighbor, fpars, fpenny, fproml, fpromlk, fprotdist, fprotpars, frestboot, frestdist, frestml, fretree, fseqboot, fseqbootall, ftreedist, ftreedistpair, _aaindexextract, _abiview, _acdc, _acdpretty, _acdtable, _acdtrace, _acdvalid, _antigenic, _backtranambig, _backtranseq |
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GITHUB
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quay.io/biocontainers/embl-api-validator |
shpc-registry automated BioContainers addition for embl-api-validator |
embl-api-validator, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/emblmygff3 |
shpc-registry automated BioContainers addition for emblmygff3 |
EMBLmyGFF3, EMBLmyGFF3-augustus-example, EMBLmyGFF3-maker-example, EMBLmyGFF3-prokka-example, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
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GITHUB
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quay.io/biocontainers/emboss |
shpc-registry automated BioContainers addition for emboss |
embossdata, embossupdate, embossversion, jembossctl, runJemboss.sh, xmlget, xmltext, aaindexextract, abiview, acdc, acdgalaxy, acdlog, acdpretty, acdtable, acdtrace, acdvalid, aligncopy, aligncopypair, antigenic, assemblyget, backtranambig, backtranseq, banana, biosed, btwisted, cachedas, cachedbfetch, cacheebeyesearch, cacheensembl, chaos, charge, checktrans, cirdna, codcmp, codcopy, coderet, compseq, cons, consambig, cpgplot, cpgreport, cusp, cutgextract, cutseq, dan, dbiblast, dbifasta, dbiflat, dbigcg, dbtell, dbxcompress, dbxedam, dbxfasta, dbxflat, dbxgcg, dbxobo, dbxreport, dbxresource, dbxstat, dbxtax, dbxuncompress, degapseq, density, descseq, diffseq, distmat, dotmatcher, dotpath, dottup, dreg, drfinddata, drfindformat, drfindid, drfindresource, drget, drtext, edamdef, edamhasinput, edamhasoutput, edamisformat, edamisid, edamname, edialign, einverted, emma, emowse, entret, epestfind, eprimer3, eprimer32, equicktandem, est2genome, etandem, extractalign, extractfeat, featcopy, featmerge, featreport, feattext, findkm, freak, fuzznuc, fuzzpro, fuzztran, garnier |
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GITHUB
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quay.io/biocontainers/emeraldbgc |
shpc-registry automated BioContainers addition for emeraldbgc |
emerald_build_gb, emeraldbgc, import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2 |
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GITHUB
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quay.io/biocontainers/emirge |
shpc-registry automated BioContainers addition for emirge |
emirge.py, emirge_amplicon.py, emirge_makedb.py, emirge_rename_fasta.py, vsearch, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect |
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GITHUB
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quay.io/biocontainers/emmix |
shpc-registry automated BioContainers addition for emmix |
EMMIX |
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GITHUB
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quay.io/biocontainers/emmtyper |
shpc-registry automated BioContainers addition for emmtyper |
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GITHUB
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quay.io/biocontainers/emperor |
shpc-registry automated BioContainers addition for emperor |
make_emperor.py, qcli_make_rst, qcli_make_script, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/emptydrops |
shpc-registry automated BioContainers addition for emptydrops |
f2py3.9, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug |
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GITHUB
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quay.io/biocontainers/emu-pca |
singularity registry hpc automated addition for emu-pca |
emu, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/emu |
shpc-registry automated BioContainers addition for emu |
bioawk, emu, sdust, paftools.js, minimap2, k8, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10 |
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GITHUB
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quay.io/biocontainers/emvc-2 |
singularity registry hpc automated addition for emvc-2 |
candidate_variants_finder, emvc-2, f2py3.8, tqdm, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim, wgsim_eval.pl, samtools, 2to3-3.8, idle3.8, pydoc3.8 |
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GITHUB
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quay.io/biocontainers/ena-dl |
shpc-registry automated BioContainers addition for ena-dl |
ena-dl, chardetect, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/ena-upload-cli |
shpc-registry automated BioContainers addition for ena-upload-cli |
ena-upload-cli, xml2-config.bak, normalizer, xslt-config, xsltproc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10 |
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GITHUB
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quay.io/biocontainers/ena-webin-cli |
shpc-registry automated BioContainers addition for ena-webin-cli |
ena-webin-cli, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
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GITHUB
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quay.io/biocontainers/enabrowsertools |
shpc-registry automated BioContainers addition for enabrowsertools |
assemblyGet.py, enaDataGet, enaDataGet.py, enaGroupGet, enaGroupGet.py, readGet.py, sequenceGet.py, utils.py, utils_py2.py, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/enano |
shpc-registry automated BioContainers addition for enano |
enano |
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GITHUB
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quay.io/biocontainers/enasearch |
shpc-registry automated BioContainers addition for enasearch |
enasearch, flake8, pycodestyle, pyflakes, f2py2, f2py2.7, chardetect, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/encode-blacklist |
shpc-registry automated BioContainers addition for encode-blacklist |
Blacklist, bamtools |
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GITHUB
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quay.io/biocontainers/encyclopedia |
shpc-registry automated BioContainers addition for encyclopedia |
EncyclopeDIA, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/endorspy |
shpc-registry automated BioContainers addition for endorspy |
endorspy, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/enrichm |
shpc-registry automated BioContainers addition for enrichm |
chronic, combine, enrichm, errno, ifdata, ifne, isutf8, lckdo, mispipe, pee, seqmagick, sponge, ts, vidir, vipe, zrun, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray, mcxassemble |
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GITHUB
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quay.io/biocontainers/ensembl-genomio |
singularity registry hpc automated addition for ensembl-genomio |
annotation_update_description, assembly_download, assembly_tracker, database_factory, events_dump, events_format, events_load, extract_file, fasta_chunk, fasta_process, genbank_download, genbank_extract_data, genome_metadata_dump, genome_metadata_extend, genome_metadata_prepare, genome_stats_compare, genome_stats_dump, gff3_overlaps, gff3_process, manifest_check_integrity, manifest_compute_stats, manifest_generate, query_db_meta, schemas_json_factory, schemas_json_validate, seq_region_dump, seq_region_prepare, spython, dotenv, pybabel, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py, bed_count_overlapping.py, bed_coverage.py, bed_coverage_by_interval.py, bed_diff_basewise_summary.py, bed_extend_to.py, bed_intersect.py, bed_intersect_basewise.py, bed_merge_overlapping.py, bed_rand_intersect.py, bed_subtract_basewise.py, bnMapper.py, div_snp_table_chr.py, find_in_sorted_file.py |
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GITHUB
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quay.io/biocontainers/ensembl-utils |
singularity registry hpc automated addition for ensembl-utils |
dotenv, extract_file, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, normalizer |
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GITHUB
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quay.io/biocontainers/ensembl-vep |
shpc-registry automated BioContainers addition for ensembl-vep |
filter_vep, haplo, variant_recoder, vep, vep_convert_cache, vep_install, giffilter, gifsponge, unzip, gifecho, gifinto, gdlib-config, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee |
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GITHUB
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quay.io/biocontainers/entrez-direct |
shpc-registry automated BioContainers addition for entrez-direct |
asp-ls.bak, edirect.pl.bak, edirutil.bak, erase-pubmed, ftp-cp.bak, ftp-ls.bak, gbf2xml.bak, get-stash-uids, invert-pubmed, log-pubmed, master-pubmed, merge-pubmed, nquire.bak, prepare-stash, promote-pubmed, refresh-versioned, repack-pubmed, run-ncbi-converter.bak, setup-deps.pl.bak, setup.sh.orig, stash-pubmed, common.go, rchive.go, setup-deps.log, setup.sh, xtract.go, asp-cp, asp-ls, has-asp, index-pubmed, eaddress |
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GITHUB
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quay.io/biocontainers/entrezpy |
shpc-registry automated BioContainers addition for entrezpy |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/eoulsan |
shpc-registry automated BioContainers addition for eoulsan |
eoulsan.sh, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/epa-ng |
shpc-registry automated BioContainers addition for epa-ng |
epa-ng |
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GITHUB
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quay.io/biocontainers/ephemeris |
shpc-registry automated BioContainers addition for ephemeris |
bioblend-galaxy-tests, galaxy-tool-test, galaxy-wait, get-tool-list, mulled-build, mulled-build-channel, mulled-build-files, mulled-build-tool, mulled-search, run-data-managers, setup-data-libraries, shed-tools, workflow-install, workflow-to-tools, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier |
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GITHUB
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quay.io/biocontainers/epic |
shpc-registry automated BioContainers addition for epic |
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GITHUB
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quay.io/biocontainers/epic2 |
shpc-registry automated BioContainers addition for epic2 |
epic2, epic2-bw, epic2-df, natsort, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
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quay.io/biocontainers/epicseg |
shpc-registry automated BioContainers addition for epicseg |
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GITHUB
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quay.io/biocontainers/epik |
singularity registry hpc automated addition for epik |
epik-aa, epik-dna, epik.py, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/epimuller |
shpc-registry automated BioContainers addition for epimuller |
cairosvg, epimuller, epimuller-define, epimuller-draw, epimuller-parse, ete3, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util |
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GITHUB
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quay.io/biocontainers/episcanpy |
singularity registry hpc automated addition for episcanpy |
dunamai, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, scanpy, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, pt2to3, ptdump, ptrepack, pttree, numba, pycc, natsort, mirror_server, mirror_server_stop, rst2html4.py, rst2html5.py, rst2html.py |
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GITHUB
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quay.io/biocontainers/epiweeks |
shpc-registry automated BioContainers addition for epiweeks |
2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/epydoc |
shpc-registry automated BioContainers addition for epydoc |
apirst2html.py, epydoc, epydocgui, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/epytope |
shpc-registry automated BioContainers addition for epytope |
_mhcflurry-cluster-worker-entry-point, mhcflurry-calibrate-percentile-ranks, mhcflurry-class1-select-allele-specific-models, mhcflurry-class1-select-pan-allele-models, mhcflurry-class1-train-allele-specific-models, mhcflurry-class1-train-pan-allele-models, mhcflurry-downloads, mhcflurry-predict, pyomo, theano-cache, theano-nose, freeze_graph, mako-render, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin |
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GITHUB
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quay.io/biocontainers/eqtlbma |
shpc-registry automated BioContainers addition for eqtlbma |
eqtlbma_avg_bfs, eqtlbma_bf, eqtlbma_bf_parallel.bash, eqtlbma_hm, tutorial_eqtlbma.R, x86_64-conda-linux-gnu-gfortran.bin, gio-launch-desktop, c89, c99 |
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GITHUB
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quay.io/biocontainers/equirep |
singularity registry hpc automated addition for equirep |
EquiRep |
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GITHUB
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quay.io/biocontainers/erds |
shpc-registry automated BioContainers addition for erds |
erds_pipeline, perl5.22.0, c2ph, pstruct, bcftools, vcfutils.pl, samtools, podselect |
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GITHUB
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quay.io/biocontainers/ericscript |
shpc-registry automated BioContainers addition for ericscript |
ericscript.pl, blat, seqtk, perl5.32.0, qualfa2fq.pl, xa2multi.pl, bwa, bcftools, vcfutils.pl, shiftBed, annotateBed |
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GITHUB
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quay.io/biocontainers/erne |
shpc-registry automated BioContainers addition for erne |
erne-bs5, erne-create, erne-filter, erne-map, erne-meth, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/ervdetective |
singularity registry hpc automated addition for ervdetective |
ervdetective, genometools-config, gt, just-first-key, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gbf2fsa, gbf2ref, gm2ranges |
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GITHUB
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quay.io/biocontainers/ervmancer |
singularity registry hpc automated addition for ervmancer |
ervmancer, annot-tsv, idle3.13, pydoc3.13, python3.13, python3.13-config, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, numpy-config, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed |
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GITHUB
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quay.io/biocontainers/escher |
shpc-registry automated BioContainers addition for escher |
ccache-swig, isympy, pipdeptree, swig, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run, iptest3, curve_keygen |
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GITHUB
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quay.io/biocontainers/esimsa |
shpc-registry automated BioContainers addition for esimsa |
esimsa |
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GITHUB
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quay.io/biocontainers/eskrim |
singularity registry hpc automated addition for eskrim |
eskrim, jellyfish, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/esme_esmf_mpich_4_2_3 |
singularity registry hpc automated addition for esme_esmf_mpich_4_2_3 |
ESMF_PrintInfo, ESMF_PrintInfoC, ESMF_Regrid, ESMF_RegridWeightGen, ESMF_Scrip2Unstruct, ESMF_WebServController, ESMX_Builder, cdfdiff, chacl, getfacl, h5pcc, h5perf, h5pfc, nc4print, ncmpidiff, ncmpidump, ncmpigen, ncoffsets, ncvalidator, ocprint, ph5diff, pnetcdf-config, pnetcdf_version, setfacl, h5fuse, ucx_perftest_daemon, nf-config, mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add |
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GITHUB
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quay.io/biocontainers/esme_esmf_openmpi_4_1_6 |
singularity registry hpc automated addition for esme_esmf_openmpi_4_1_6 |
ESMF_PrintInfo, ESMF_PrintInfoC, ESMF_Regrid, ESMF_RegridWeightGen, ESMF_Scrip2Unstruct, ESMF_WebServController, ESMX_Builder, cdfdiff, chacl, getfacl, h5pcc, h5perf, h5pfc, nc4print, ncmpidiff, ncmpidump, ncmpigen, ncoffsets, ncvalidator, ocprint, ph5diff, pnetcdf-config, pnetcdf_version, setfacl, h5fuse, nf-config, shmemrun, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun, shmemcc, shmemfort, attr, getfattr, setfattr, aggregate_profile.pl, profile2mat.pl, ompi-clean, ompi-server, orte-clean, orte-info, orte-server |
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GITHUB
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quay.io/biocontainers/esme_hdf5_mpich_4_2_3 |
singularity registry hpc automated addition for esme_hdf5_mpich_4_2_3 |
chacl, getfacl, h5pcc, h5perf, h5pfc, mpiexec.gforker, ph5diff, setfacl, h5fuse, ucx_perftest_daemon, mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete |
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GITHUB
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quay.io/biocontainers/esme_hdf5_openmpi_5_0_7 |
singularity registry hpc automated addition for esme_hdf5_openmpi_5_0_7 |
chacl, getfacl, h5pcc, h5perf, h5pfc, ph5diff, prte, prte_info, prted, prterun, pterm, setfacl, ucc_info, prun, h5fuse, ucx_perftest_daemon, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup |
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GITHUB
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quay.io/biocontainers/esme_mpich_4_2_3 |
singularity registry hpc automated addition for esme_mpich_4_2_3 |
ESMF_PrintInfo, ESMF_PrintInfoC, ESMF_Regrid, ESMF_RegridWeightGen, ESMF_Scrip2Unstruct, ESMF_WebServController, ESMX_Builder, cdfdiff, chacl, getfacl, h5pcc, h5perf, h5pfc, nc4print, ncmpidiff, ncmpidump, ncmpigen, ncoffsets, ncvalidator, ocprint, ph5diff, pnetcdf-config, pnetcdf_version, setfacl, gost12-256-hash, gost12-512-hash, h5fuse, edonr256-hash, edonr512-hash, ccmake, cmake, cpack, ctest, ed2k-link, has160-hash, magnet-link, rhash, sfv-hash, tiger-hash, tth-hash, ucx_perftest_daemon, whirlpool-hash, nf-config, mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy |
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GITHUB
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quay.io/biocontainers/esme_netcdf-c_mpich_4_2_3 |
singularity registry hpc automated addition for esme_netcdf-c_mpich_4_2_3 |
mpiexec.gforker, nc4print, ocprint, ucx_perftest_daemon, mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list |
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GITHUB
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quay.io/biocontainers/esme_netcdf-fortran_openmpi_4_1_6 |
singularity registry hpc automated addition for esme_netcdf-fortran_openmpi_4_1_6 |
nf-config, shmemrun, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun, shmemcc, shmemfort, aggregate_profile.pl, profile2mat.pl, ompi-clean, ompi-server, orte-clean, orte-info, orte-server, ortecc, orted, orterun, mpiCC |
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GITHUB
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quay.io/biocontainers/esme_netcdf-fortran_openmpi_5_0_6 |
singularity registry hpc automated addition for esme_netcdf-fortran_openmpi_5_0_6 |
prte, prte_info, prted, prterun, pterm, ucc_info, prun, ucx_perftest_daemon, nf-config, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup |
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GITHUB
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quay.io/biocontainers/esme_netcdf-fortran_openmpi_5_0_7 |
singularity registry hpc automated addition for esme_netcdf-fortran_openmpi_5_0_7 |
prte, prte_info, prted, prterun, pterm, ucc_info, prun, ucx_perftest_daemon, nf-config, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup |
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GITHUB
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quay.io/biocontainers/esme_omb_mpich_4_2_3 |
singularity registry hpc automated addition for esme_omb_mpich_4_2_3 |
ucx_perftest_daemon, mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list |
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GITHUB
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quay.io/biocontainers/esme_omb_openmpi_4_1_6 |
singularity registry hpc automated addition for esme_omb_openmpi_4_1_6 |
shmemrun, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun, shmemcc, shmemfort, aggregate_profile.pl, profile2mat.pl, ompi-clean, ompi-server, orte-clean, orte-info, orte-server, ortecc, orted, orterun, mpiCC, ompi_info |
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GITHUB
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quay.io/biocontainers/esme_omb_openmpi_5_0_6 |
singularity registry hpc automated addition for esme_omb_openmpi_5_0_6 |
prte, prte_info, prted, prterun, pterm, ucc_info, prun, ucx_perftest_daemon, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave |
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GITHUB
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quay.io/biocontainers/esme_omb_openmpi_5_0_7 |
singularity registry hpc automated addition for esme_omb_openmpi_5_0_7 |
prte, prte_info, prted, prterun, pterm, ucc_info, prun, ucx_perftest_daemon, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave |
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GITHUB
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quay.io/biocontainers/esme_openmpi_4_1_6 |
singularity registry hpc automated addition for esme_openmpi_4_1_6 |
ESMF_PrintInfo, ESMF_PrintInfoC, ESMF_Regrid, ESMF_RegridWeightGen, ESMF_Scrip2Unstruct, ESMF_WebServController, ESMX_Builder, cdfdiff, chacl, getfacl, h5pcc, h5perf, h5pfc, nc4print, ncmpidiff, ncmpidump, ncmpigen, ncoffsets, ncvalidator, ocprint, ph5diff, pnetcdf-config, pnetcdf_version, setfacl, gost12-256-hash, gost12-512-hash, h5fuse, edonr256-hash, edonr512-hash, ccmake, cmake, cpack, ctest, ed2k-link, has160-hash, magnet-link, rhash, sfv-hash, tiger-hash, tth-hash, whirlpool-hash, nf-config, shmemrun, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx |
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GITHUB
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quay.io/biocontainers/esme_pio_mpich_4_2_3 |
singularity registry hpc automated addition for esme_pio_mpich_4_2_3 |
mpiexec.gforker, ucx_perftest_daemon, mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list |
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GITHUB
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quay.io/biocontainers/esme_pio_openmpi_4_1_6 |
singularity registry hpc automated addition for esme_pio_openmpi_4_1_6 |
shmemrun, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun, shmemcc, shmemfort, aggregate_profile.pl, profile2mat.pl, ompi-clean, ompi-server, orte-clean, orte-info, orte-server, ortecc, orted, orterun, mpiCC, ompi_info |
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GITHUB
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quay.io/biocontainers/esme_pio_openmpi_5_0_7 |
singularity registry hpc automated addition for esme_pio_openmpi_5_0_7 |
prte, prte_info, prted, prterun, pterm, ucc_info, prun, ucx_perftest_daemon, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave |
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GITHUB
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quay.io/biocontainers/esme_pnetcdf_mpich_4_2_3 |
singularity registry hpc automated addition for esme_pnetcdf_mpich_4_2_3 |
cdfdiff, mpiexec.gforker, ncmpidiff, ncmpidump, ncmpigen, ncoffsets, ncvalidator, pnetcdf-config, pnetcdf_version, ucx_perftest_daemon, mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list |
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GITHUB
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quay.io/biocontainers/esme_pnetcdf_openmpi_4_1_6 |
singularity registry hpc automated addition for esme_pnetcdf_openmpi_4_1_6 |
cdfdiff, ncmpidiff, ncmpidump, ncmpigen, ncoffsets, ncvalidator, pnetcdf-config, pnetcdf_version, shmemrun, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun, shmemcc, shmemfort, aggregate_profile.pl, profile2mat.pl, ompi-clean, ompi-server, orte-clean, orte-info, orte-server, ortecc, orted, orterun, mpiCC, ompi_info |
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GITHUB
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quay.io/biocontainers/esme_pnetcdf_openmpi_5_0_6 |
singularity registry hpc automated addition for esme_pnetcdf_openmpi_5_0_6 |
cdfdiff, ncmpidiff, ncmpidump, ncmpigen, ncoffsets, ncvalidator, pnetcdf-config, pnetcdf_version, prte, prte_info, prted, prterun, pterm, ucc_info, prun, ucx_perftest_daemon, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave |
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GITHUB
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quay.io/biocontainers/esme_pnetcdf_openmpi_5_0_7 |
singularity registry hpc automated addition for esme_pnetcdf_openmpi_5_0_7 |
cdfdiff, ncmpidiff, ncmpidump, ncmpigen, ncoffsets, ncvalidator, pnetcdf-config, pnetcdf_version, prte, prte_info, prted, prterun, pterm, ucc_info, prun, ucx_perftest_daemon, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave |
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GITHUB
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quay.io/biocontainers/esmre |
shpc-registry automated BioContainers addition for esmre |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/espresso |
singularity registry hpc automated addition for espresso |
ESPRESSO_C.pl, ESPRESSO_Q.pl, ESPRESSO_Q_Thread.pm, ESPRESSO_S.pl, ESPRESSO_Version.pm, test_pcre, hmmpgmd_shard, easel, esl-mixdchlet, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn, esl-seqrange, esl-seqstat |
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GITHUB
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quay.io/biocontainers/est-sfs |
singularity registry hpc automated addition for est-sfs |
est-sfs |
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GITHUB
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quay.io/biocontainers/estscan |
shpc-registry automated BioContainers addition for estscan |
estscan |
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GITHUB
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quay.io/biocontainers/esviritu |
singularity registry hpc automated addition for esviritu |
EsViritu, bioawk, bwa-mem2, bwa-mem2.avx, bwa-mem2.avx2, bwa-mem2.avx512bw, bwa-mem2.sse41, bwa-mem2.sse42, coverm, dadaist2-mergeseqs, dashing, fu-16Sregion, fu-cov, fu-homocomp, fu-index, fu-msa, fu-multirelabel, fu-nanotags, fu-orf, fu-primers, fu-shred, fu-split, fu-sw, fu-tabcheck, fu-virfilter, hb-info, remove_minimap2_duplicated_headers, seqfu, starcode, fastANI, seqkit, fastp, test_pcre, tjbench, igzip, f2py3.11, sdust, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, k8, paftools.js, minimap2, qualfa2fq.pl, xa2multi.pl, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table |
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GITHUB
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quay.io/biocontainers/eta |
shpc-registry automated BioContainers addition for eta |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/ete2 |
shpc-registry automated BioContainers addition for ete2 |
ete, pylupdate4, pyrcc4, pyuic4, qdoc3, qmlviewer, qt3to4, qtconfig, qttracereplay, my_print_defaults, mysql_config, perror, qhelpconverter, f2py2, f2py2.7, sip, xslt-config, xsltproc, assistant |
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GITHUB
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quay.io/biocontainers/ete3 |
shpc-registry automated BioContainers addition for ete3 |
ete3, qhelpconverter, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner, repc, pylupdate5, pyrcc5 |
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GITHUB
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quay.io/biocontainers/eternafold |
singularity registry hpc automated addition for eternafold |
eternafold |
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GITHUB
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quay.io/biocontainers/etoki |
singularity registry hpc automated addition for etoki |
EToKi.py, GenomeAnalysisTK, SimBac, Xcalcmem.sh, attr, balsam, coronaspades.py, esdcompat, fasta-nr, fastq-interleave, flye, flye-minimap2, flye-modules, flye-samtools, gatk-register, getfattr, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, kraken2, kraken2-build, kraken2-inspect, last-dotplot, last-map-probs, last-merge-batches, last-pair-probs, last-postmask, last-split, last-split5, last-train, lastal, lastal5, lastdb, lastdb5, lprodump, lrelease-pro, lupdate-pro, maf-convert, maf-cut, maf-join, maf-sort, maf-swap, meshdebug, metaplasmidspades.py, metaviralspades.py, nextPolish, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parallel-fasta, parallel-fastq, paralleltask, parec, parecord, pasuspender, pilercr, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, rapidnj, raxml-ng, raxml-ng-mpi, rnaviralspades.py, seq_count, seq_split, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, flac, gatk, kmutate.sh, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, metaflac, rsync-ssl, runhmm.sh, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, megahit, megahit_toolkit, pilon, trf4.10.0-rc.2.linux64.exe, kmerposition.sh, reformatpb.sh |
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GITHUB
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quay.io/biocontainers/eukcc |
shpc-registry automated BioContainers addition for eukcc |
binlinks.py, epa-ng, eukcc, filter_euk_bins.py, metaeuk, shared_markers, rppr, guppy, pplacer, ete3, gawk-5.1.0, xkbcli, awk, gawk, pg_config, qdistancefieldgenerator |
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GITHUB
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quay.io/biocontainers/eukfinder |
singularity registry hpc automated addition for eukfinder |
Eukfinder.py, acc2tax, centrifuge, centrifuge-BuildSharedSequence.pl, centrifuge-RemoveEmptySequence.pl, centrifuge-RemoveN.pl, centrifuge-build, centrifuge-build-bin, centrifuge-class, centrifuge-compress.pl, centrifuge-download, centrifuge-inspect, centrifuge-inspect-bin, centrifuge-kreport, centrifuge-sort-nt.pl, centrifuge_evaluate.py, centrifuge_simulate_reads.py, eukfinder, plast, coronaspades.py, metaplasmidspades.py, metaviralspades.py, rnaviralspades.py, seqkit, cds-mapping-stats, cds-subgraphs, mag-improve, spades-convert-bin-to-fasta, spades-gsimplifier, spades-kmer-estimating, spades-read-filter, spaligner, spades-bwa, spades-core, spades-corrector-core, spades-gbuilder, spades-gmapper, spades-hammer, spades-ionhammer, spades-kmercount, spades-truseq-scfcorrection, trimmomatic, metaspades.py, plasmidspades.py |
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GITHUB
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quay.io/biocontainers/eukrep |
shpc-registry automated BioContainers addition for eukrep |
EukRep, kpal, futurize, pasteurize, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config |
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GITHUB
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quay.io/biocontainers/eukulele |
shpc-registry automated BioContainers addition for eukulele |
EUKulele, after_job.sh, concatenate_busco.sh, configure_busco.sh, coordinate_batch.sh, create_protein_table.py, download_database.sh, install_dependencies.sh, run_busco.sh, test_pcre, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, diamond, seedtop, idn2, blast_formatter, blastdb_aliastool |
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GITHUB
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quay.io/biocontainers/eva-sub-cli |
singularity registry hpc automated addition for eva-sub-cli |
archive_directory.py, biovalidator, check_fasta_insdc.py, eva-sub-cli.py, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, samples_checker.py, vcf_assembly_checker, vcf_validator, xlsx2json.py, corepack, nextflow.bak, npx, nextflow, node, npm, jwebserver, basenc, b2sum, ls, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date |
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GITHUB
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quay.io/biocontainers/eval |
shpc-registry automated BioContainers addition for eval |
RangeFinder.py, combine_eval_reports.pl, eval.pl, evaluate_gtf.pl, filter_badlist.pl, filter_gtfs.pl, get_distribution.pl, get_general_stats.pl, get_overlap_stats.pl, gff3_to_gtf.pl, graph_gtfs.pl, make_intron_lenght_vs_performance_graph.pl, merge_gtf_transcripts.py, validate_gtf.pl, validate_splice_sites.pl, bp_pairwise_kaks.pl, bp_search2BSML.pl, bp_aacomp.pl, bp_biofetch_genbank_proxy.pl, bp_bioflat_index.pl, bp_biogetseq.pl, bp_blast2tree.pl, bp_bulk_load_gff.pl, bp_chaos_plot.pl, bp_classify_hits_kingdom.pl |
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GITHUB
|
quay.io/biocontainers/evidencemodeler |
shpc-registry automated BioContainers addition for evidencemodeler |
evidence_modeler.pl, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/evigene |
singularity registry hpc automated addition for evigene |
esd2esi, exonerate, exonerate-server, fasta2esd, fastaannotatecdna, fastachecksum, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasubseq, fastatranslate, fastavalidcds, ipcress, fastaclean, fastasplit, blastn_vdb, tblastn_vdb, uuid, uuid-config, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div, cd-hit-div.pl, cd-hit-est-2d, cd-hit-para.pl, clstr2tree.pl, clstr2txt.pl, clstr2xml.pl, clstr_cut.pl, clstr_merge.pl, clstr_merge_noorder.pl, clstr_quality_eval.pl |
|
GITHUB
|
quay.io/biocontainers/evofold2 |
shpc-registry automated BioContainers addition for evofold2 |
EvoFoldV2, EvoFoldV2.sh, dfgEval, dfgTrain, grammarTrain, multinomial |
|
GITHUB
|
quay.io/biocontainers/evofr |
singularity registry hpc automated addition for evofr |
f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, protoc, normalizer, tqdm, python3.1 |
|
GITHUB
|
quay.io/biocontainers/examine |
shpc-registry automated BioContainers addition for examine |
examine, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/excludonfinder |
singularity registry hpc automated addition for excludonfinder |
ExcludonFinder, bwa-mem2, bwa-mem2.avx, bwa-mem2.avx2, bwa-mem2.avx512bw, bwa-mem2.sse41, bwa-mem2.sse42, exactSNP, featureCounts, flattenGTF, genRandomReads, propmapped, qualityScores, removeDup, repair, subindel, subjunc, sublong, subread-align, subread-buildindex, subread-fullscan, x86_64-conda-linux-gnu.cfg, annot-tsv, idle3.13, pydoc3.13, python3.13, python3.13-config, parsort, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh, env_parallel.pdksh, env_parallel.sh, env_parallel.tcsh, env_parallel.zsh, niceload, parcat, parset, sem, sql, parallel |
|
GITHUB
|
quay.io/biocontainers/exomiser-rest-prioritiser |
shpc-registry automated BioContainers addition for exomiser-rest-prioritiser |
exomiser-rest-prioritiser, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/exonerate |
shpc-registry automated BioContainers addition for exonerate |
esd2esi, exonerate, exonerate-server, fasta2esd, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds, ipcress, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/expam |
singularity registry hpc automated addition for expam |
expam, expam_limit, pt2to3, ptdump, ptrepack, pttree, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, f2py3.9, opj_compress, opj_decompress, opj_dump, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import |
|
GITHUB
|
quay.io/biocontainers/expansionhunter |
shpc-registry automated BioContainers addition for expansionhunter |
ExpansionHunter, f2py3.8, htsfile, bgzip, tabix, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/expansionhunterdenovo |
shpc-registry automated BioContainers addition for expansionhunterdenovo |
ExpansionHunterDenovo, ccmake, cmake, cpack, ctest, ed2k-link, edonr256-hash, edonr512-hash, gost12-256-hash, gost12-512-hash, has160-hash, magnet-link, rhash, sfv-hash, tiger-hash, tth-hash, whirlpool-hash, htsfile, bgzip, tabix, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/exparna |
shpc-registry automated BioContainers addition for exparna |
ExpaRNA, RNAmultifold, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold |
|
GITHUB
|
quay.io/biocontainers/expat |
shpc-registry automated BioContainers addition for expat |
|
|
GITHUB
|
quay.io/biocontainers/export2graphlan |
shpc-registry automated BioContainers addition for export2graphlan |
export2graphlan.py, hclust2.py, compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, f2py2 |
|
GITHUB
|
quay.io/biocontainers/express |
shpc-registry automated BioContainers addition for express |
express |
|
GITHUB
|
quay.io/biocontainers/expressbetadiversity |
shpc-registry automated BioContainers addition for expressbetadiversity |
AbstractPlot.py, ExpressBetaDiversity, convertToEBD.py, convertToFullMatrix.py, pcoaPlot.py, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp |
|
GITHUB
|
quay.io/biocontainers/extern |
shpc-registry automated BioContainers addition for extern |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/extract-codon-alignment |
shpc-registry automated BioContainers addition for extract-codon-alignment |
extract_codon_alignment, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/extract-sv-reads |
shpc-registry automated BioContainers addition for extract-sv-reads |
extract-sv-reads, htsfile, bgzip, tabix, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/extract_fasta_seq |
shpc-registry automated BioContainers addition for extract_fasta_seq |
extract_fasta_seq, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/extract_fullseq |
shpc-registry automated BioContainers addition for extract_fullseq |
extract_fullseq |
|
GITHUB
|
quay.io/biocontainers/extract_genome_region |
shpc-registry automated BioContainers addition for extract_genome_region |
extract_genome_region, faidx, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/extract_vcf |
singularity registry hpc automated addition for extract_vcf |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/extracthifi |
shpc-registry automated BioContainers addition for extracthifi |
extracthifi |
|
GITHUB
|
quay.io/biocontainers/extractpirs |
shpc-registry automated BioContainers addition for extractpirs |
extractPIRs |
|
GITHUB
|
quay.io/biocontainers/ezaai |
singularity registry hpc automated addition for ezaai |
EzAAI, mmseqs, clhsdb, hsdb, gawk-5.1.0, awk, gawk, diamond, prodigal, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns |
|
GITHUB
|
quay.io/biocontainers/ezcharts |
singularity registry hpc automated addition for ezcharts |
ezcharts, pymsaviz, pysassc, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, bokeh, py.test, pytest, natsort, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fonttools, pyftmerge, pyftsubset, ttx, tjbench, brotli, opj_compress, opj_decompress, opj_dump |
|
GITHUB
|
quay.io/biocontainers/ezclermont |
shpc-registry automated BioContainers addition for ezclermont |
ezclermont, coverage, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/ezomero |
singularity registry hpc automated addition for ezomero |
omero, slice2py, futurize, pasteurize, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/f5c |
shpc-registry automated BioContainers addition for f5c |
f5c, mirror_server, mirror_server_stop, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy |
|
GITHUB
|
quay.io/biocontainers/fadapa |
shpc-registry automated BioContainers addition for fadapa |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/fade |
shpc-registry automated BioContainers addition for fade |
fade |
|
GITHUB
|
quay.io/biocontainers/fairease-source |
singularity registry hpc automated addition for fairease-source |
create_probes_earth_map.py, csv2kml, data_information_calc.py, depth_aggregator.py, depth_calc.py, duplicated_records_remover.py, find_variable_name.py, insitu_evaluation.py, insitu_tac_platforms_finder.py, insitu_tac_pre_processing.py, insitu_tac_timeseries_extractor.py, kml2pykml, mean_variance_nc_variable.py, metadata_merger.py, model_datasets_concatenator.py, model_postpro.py, nc3tonc4, nc4tonc3, ncinfo, obs_postpro.py, pointwise_datasets_concatenator.py, ptmp_to_temp.py, quality_check_applier.py, real_time_concatenator.py, records_monotonicity_fixer.py, rejection_statistics.py, time_averager.py, time_calc.py, time_check.py, time_from_index.py, time_series_post_processing.py, unique_values_nc_variable.py, validate_kml, vertical_interpolation.py, h5delete, unidecode, tjbench, aec, f2py3.11, zipcmp, zipmerge, ziptool, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport |
|
GITHUB
|
quay.io/biocontainers/fairy |
singularity registry hpc automated addition for fairy |
fairy |
|
GITHUB
|
quay.io/biocontainers/falco |
shpc-registry automated BioContainers addition for falco |
falco, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/famsa |
shpc-registry automated BioContainers addition for famsa |
famsa |
|
GITHUB
|
quay.io/biocontainers/famseq |
shpc-registry automated BioContainers addition for famseq |
FamSeq |
|
GITHUB
|
quay.io/biocontainers/fanc |
shpc-registry automated BioContainers addition for fanc |
calc-prorate, cheroot, cherryd, convert-regions, fanc, fancplot, gridmap_web, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng |
|
GITHUB
|
quay.io/biocontainers/fann |
shpc-registry automated BioContainers addition for fann |
|
|
GITHUB
|
quay.io/biocontainers/faqcs |
shpc-registry automated BioContainers addition for faqcs |
FaQCs |
|
GITHUB
|
quay.io/biocontainers/fargene |
shpc-registry automated BioContainers addition for fargene |
ORFfinder, fargene, fargene_model_creation, pick_long_reads, trim_galore, clustalo, _aaindexextract, _abiview, _acdc, _acdpretty, _acdtable, _acdtrace, _acdvalid, _antigenic, _backtranambig |
|
GITHUB
|
quay.io/biocontainers/fast-edit-distance |
singularity registry hpc automated addition for fast-edit-distance |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/fast5-research |
shpc-registry automated BioContainers addition for fast5-research |
extract_reads, conv-template, from-template, py.test, pytest, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m |
|
GITHUB
|
quay.io/biocontainers/fast5 |
shpc-registry automated BioContainers addition for fast5 |
|
|
GITHUB
|
quay.io/biocontainers/fast5seek |
shpc-registry automated BioContainers addition for fast5seek |
fast5_subset, fast5seek, multi_to_single_fast5, single_to_multi_fast5, f2py3.6, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, 2to3-3.6, idle3.6 |
|
GITHUB
|
quay.io/biocontainers/fasta-splitter |
shpc-registry automated BioContainers addition for fasta-splitter |
fasta-splitter, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/fasta3 |
shpc-registry automated BioContainers addition for fasta3 |
ann_exons_all.pl, ann_exons_ens.pl, ann_exons_ncbi.pl, ann_exons_up_sql.pl, ann_exons_up_sql_www.pl, ann_exons_up_www.pl, ann_feats2ipr.pl, ann_feats2ipr_e.pl, ann_feats_up_sql.pl, ann_feats_up_www2.pl, ann_ipr_www.pl, ann_pdb_cath.pl, ann_pdb_vast.pl, ann_pfam30_tmptbl.pl, ann_pfam_sql.pl, ann_pfam_www.pl, ann_upfeats_pfam_www_e.pl, annot_blast_btop2.pl, color_defs.pl, exp_up_ensg.pl, expand_links.pl, expand_refseq_isoforms.pl, expand_uniref50.pl, expand_up_isoforms.pl, fasta36, fastf36, fastm36, fasts36, fastx36, fasty36, ggsearch36, glsearch36, lalign36, lav2plt.pl, lavplt_ps.pl, lavplt_svg.pl, links2sql.pl, m8_btop_msa.pl, m9B_btop_msa.pl, map_db, merge_blast_btab.pl, merge_fasta_btab.pl, parse_m9.pl, res2R.pl, shuffle_embed.pl, ssearch36, summ_domain_ident.pl, tfastf36, tfastm36, tfasts36, tfastx36, tfasty36 |
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GITHUB
|
quay.io/biocontainers/fasta_ushuffle |
shpc-registry automated BioContainers addition for fasta_ushuffle |
fasta_ushuffle, ushuffle |
|
GITHUB
|
quay.io/biocontainers/fasta_windows |
shpc-registry automated BioContainers addition for fasta_windows |
fasta_windows |
|
GITHUB
|
quay.io/biocontainers/fastafunk |
shpc-registry automated BioContainers addition for fastafunk |
fastafunk, dendropy-format, sumlabels.py, sumtrees.py, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/fastagap |
singularity registry hpc automated addition for fastagap |
fastagap |
|
GITHUB
|
quay.io/biocontainers/fastahack |
shpc-registry automated BioContainers addition for fastahack |
fastahack |
|
GITHUB
|
quay.io/biocontainers/fastaindex |
shpc-registry automated BioContainers addition for fastaindex |
FastaIndex, fasta_stats, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/fastalite |
shpc-registry automated BioContainers addition for fastalite |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/fastani |
shpc-registry automated BioContainers addition for fastani |
fastANI |
|
GITHUB
|
quay.io/biocontainers/fastaptamer |
shpc-registry automated BioContainers addition for fastaptamer |
fastaptamer_cluster, fastaptamer_cluster_xs, fastaptamer_compare, fastaptamer_count, fastaptamer_enrich, fastaptamer_search, perl5.32.0, streamzip |
|
GITHUB
|
quay.io/biocontainers/fastdtw |
shpc-registry automated BioContainers addition for fastdtw |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/fasten |
shpc-registry automated BioContainers addition for fasten |
fasten_clean, fasten_combine, fasten_convert, fasten_kmer, fasten_metrics, fasten_mutate, fasten_pe, fasten_progress, fasten_quality_filter, fasten_randomize, fasten_regex, fasten_replace, fasten_sample, fasten_shuffle, fasten_sort, fasten_straighten, fasten_trim, fasten_validate |
|
GITHUB
|
quay.io/biocontainers/fastg2protlib |
shpc-registry automated BioContainers addition for fastg2protlib |
xslt-config, xsltproc, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc |
|
GITHUB
|
quay.io/biocontainers/fastga |
singularity registry hpc automated addition for fastga |
ALNchain, ALNplot, ALNreset, ALNshow, ALNtoPAF, ALNtoPSL, FAtoGDB, FastGA, GDBshow, GDBstat, GDBtoFA, GIXcp, GIXmake, GIXmv, GIXrm, GIXshow, ONEview, PAFtoALN, PAFtoPSL |
|
GITHUB
|
quay.io/biocontainers/fastindep |
shpc-registry automated BioContainers addition for fastindep |
fastindep, fastindep-symmetry |
|
GITHUB
|
quay.io/biocontainers/fastk |
singularity registry hpc automated addition for fastk |
FastK, Fastcp, Fastmerge, Fastmv, Fastrm, Haplex, Histex, Homex, Logex, Profex, Symmex, Tabex, Vennex |
|
GITHUB
|
quay.io/biocontainers/fastkit |
singularity registry hpc automated addition for fastkit |
fastkit, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/fastlin |
singularity registry hpc automated addition for fastlin |
fastlin |
|
GITHUB
|
quay.io/biocontainers/fastlmm |
shpc-registry automated BioContainers addition for fastlmm |
get_objgraph, undill, qhelpconverter, f2py2, f2py2.7, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc |
|
GITHUB
|
quay.io/biocontainers/fastme |
shpc-registry automated BioContainers addition for fastme |
fastme |
|
GITHUB
|
quay.io/biocontainers/fastml |
shpc-registry automated BioContainers addition for fastml |
FastML_Wrapper.pl, fastml, bp_pairwise_kaks.pl, bp_search2BSML.pl, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, bp_aacomp.pl, bp_biofetch_genbank_proxy.pl |
|
GITHUB
|
quay.io/biocontainers/fastmlst |
shpc-registry automated BioContainers addition for fastmlst |
fastmlst, test_pcre, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, seedtop, tqdm, run_with_lock, f2py3.8, blast_formatter |
|
GITHUB
|
quay.io/biocontainers/fastobo |
shpc-registry automated BioContainers addition for fastobo |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/fastool |
shpc-registry automated BioContainers addition for fastool |
fastool |
|
GITHUB
|
quay.io/biocontainers/fastools |
singularity registry hpc automated addition for fastools |
fastools, split_fasta, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/fastp |
shpc-registry automated BioContainers addition for fastp |
fastp |
|
GITHUB
|
quay.io/biocontainers/fastpca |
shpc-registry automated BioContainers addition for fastpca |
fastpca |
|
GITHUB
|
quay.io/biocontainers/fastphylo |
shpc-registry automated BioContainers addition for fastphylo |
fastdist, fastprot, fastprot_mpi, fnj, aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info, opal_wrapper, orte-clean, orte-info, orte-server |
|
GITHUB
|
quay.io/biocontainers/fastplong |
singularity registry hpc automated addition for fastplong |
fastplong, igzip |
|
GITHUB
|
quay.io/biocontainers/fastq-and-furious |
shpc-registry automated BioContainers addition for fastq-and-furious |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/fastq-anonymous |
shpc-registry automated BioContainers addition for fastq-anonymous |
fastq-anonymous, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/fastq-count |
shpc-registry automated BioContainers addition for fastq-count |
fastq-count |
|
GITHUB
|
quay.io/biocontainers/fastq-dl |
shpc-registry automated BioContainers addition for fastq-dl |
abi-dump.2.11.0, abi-load, abi-load.2, abi-load.2.11.0, align-cache.2.11.0, align-info.2.11.0, bam-load.2.11.0, cache-mgr.2.11.0, ccextract, ccextract.2, ccextract.2.11.0, cg-load.2.11.0, executor, fasterq-dump-orig.2.11.0, fasterq-dump.2.11.0, fastq-dl, fastq-dump-orig.2.11.0, fastq-dump.2.11.0, fastq-load, fastq-load.2, fastq-load.2.11.0, helicos-load, helicos-load.2, helicos-load.2.11.0, illumina-dump.2.11.0, illumina-load, illumina-load.2, illumina-load.2.11.0, kar.2.11.0, kdbmeta.2.11.0, kget.2.11.0, latf-load.2.11.0, md5cp.2.11.0, pacbio-load, pacbio-load.2, pacbio-load.2.11.0, pacbio-loadxml, pacbio-loadxml.2, pacbio-loadxml.2.11.0, prefetch-orig.2.11.0, prefetch.2.11.0, rcexplain.2.11.0, read-filter-redact.2.11.0, sam-dump-orig.2.11.0, sam-dump.2.11.0, sff-dump.2.11.0, sff-load, sff-load.2, sff-load.2.11.0, sra-pileup-orig.2.11.0, sra-pileup.2.11.0, sra-sort-cg.2.11.0, sra-sort.2.11.0, sra-stat.2.11.0, srapath-orig.2.11.0, srapath.2.11.0, sratools.2.11.0, srf-load, srf-load.2, srf-load.2.11.0, test-sra.2.11.0, vdb-config.2.11.0, vdb-copy.2.11.0, vdb-decrypt.2.11.0, vdb-diff.2.11.0, vdb-dump-orig.2.11.0, vdb-dump.2.11.0, vdb-encrypt.2.11.0, vdb-lock.2.11.0, vdb-passwd.2.11.0, vdb-unlock.2.11.0, vdb-validate.2.11.0, align-cache.2, md5cp.2, read-filter-redact.2, sra-sort-cg.2, vdb-diff.2, align-cache, fasterq-dump-orig, fastq-dump-orig, md5cp, prefetch-orig |
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GITHUB
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quay.io/biocontainers/fastq-filter |
singularity registry hpc automated addition for fastq-filter |
fastq-filter, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
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quay.io/biocontainers/fastq-join |
shpc-registry automated BioContainers addition for fastq-join |
fastq-join |
|
GITHUB
|
quay.io/biocontainers/fastq-multx |
shpc-registry automated BioContainers addition for fastq-multx |
fastq-multx |
|
GITHUB
|
quay.io/biocontainers/fastq-pair |
shpc-registry automated BioContainers addition for fastq-pair |
fastq_pair |
|
GITHUB
|
quay.io/biocontainers/fastq-scan |
shpc-registry automated BioContainers addition for fastq-scan |
fastq-scan, jq, onig-config |
|
GITHUB
|
quay.io/biocontainers/fastq-screen |
shpc-registry automated BioContainers addition for fastq-screen |
bdf2gdfont.PLS, cvtbdf.pl, fastq_screen, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect, gdlib-config |
|
GITHUB
|
quay.io/biocontainers/fastq-tools |
shpc-registry automated BioContainers addition for fastq-tools |
fastq-grep, fastq-kmers, fastq-match, fastq-qscale, fastq-qual, fastq-qualadj, fastq-sample, fastq-sort, fastq-uniq |
|
GITHUB
|
quay.io/biocontainers/fastq_utils |
shpc-registry automated BioContainers addition for fastq_utils |
bam2fastq, bam_add_tags, bam_annotate.sh, bam_umi_count, fastq2bam, fastq_filter_n, fastq_filterpair, fastq_info, fastq_not_empty, fastq_num_reads, fastq_pre_barcodes, fastq_split_interleaved, fastq_tests, fastq_trim_poly_at, fastq_truncate, fastq_validator.sh, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa |
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GITHUB
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quay.io/biocontainers/fastqc-rs |
shpc-registry automated BioContainers addition for fastqc-rs |
fqc |
|
GITHUB
|
quay.io/biocontainers/fastqc |
shpc-registry automated BioContainers addition for fastqc |
fastqc |
|
GITHUB
|
quay.io/biocontainers/fastqe |
shpc-registry automated BioContainers addition for fastqe |
fastqe, pyemojify, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/fastqmetrics |
shpc-registry automated BioContainers addition for fastqmetrics |
fastqmetrics, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
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quay.io/biocontainers/fastqpuri |
shpc-registry automated BioContainers addition for fastqpuri |
Qreport, Sreport, makeBloom, makeTree, trimFilter, trimFilterPE, pandoc |
|
GITHUB
|
quay.io/biocontainers/fastqsplitter |
shpc-registry automated BioContainers addition for fastqsplitter |
fastqsplitter, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, 2to3-3.8, idle3.8, pydoc3.8, python3.8 |
|
GITHUB
|
quay.io/biocontainers/fastqtk |
singularity registry hpc automated addition for fastqtk |
fastqtk |
|
GITHUB
|
quay.io/biocontainers/fastremap-bio |
singularity registry hpc automated addition for fastremap-bio |
FastRemap |
|
GITHUB
|
quay.io/biocontainers/fastsimbac |
shpc-registry automated BioContainers addition for fastsimbac |
fastSimBac, msformatter, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/fastspar |
shpc-registry automated BioContainers addition for fastspar |
fastspar, fastspar_bootstrap, fastspar_pvalues, fastspar_reduce |
|
GITHUB
|
quay.io/biocontainers/faststructure |
shpc-registry automated BioContainers addition for faststructure |
chooseK.py, distruct.py, structure.py, qhelpconverter, f2py2, f2py2.7, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner, repc |
|
GITHUB
|
quay.io/biocontainers/fasttree |
shpc-registry automated BioContainers addition for fasttree |
FastTree, FastTree.c, FastTreeMP, fasttree |
|
GITHUB
|
quay.io/biocontainers/fastuniq |
shpc-registry automated BioContainers addition for fastuniq |
fastuniq |
|
GITHUB
|
quay.io/biocontainers/fastutils |
shpc-registry automated BioContainers addition for fastutils |
fastutils |
|
GITHUB
|
quay.io/biocontainers/fastv |
shpc-registry automated BioContainers addition for fastv |
fastv |
|
GITHUB
|
quay.io/biocontainers/fastx_toolkit |
shpc-registry automated BioContainers addition for fastx_toolkit |
|
|
GITHUB
|
quay.io/biocontainers/fates-emerald |
shpc-registry automated BioContainers addition for fates-emerald |
|
|
GITHUB
|
quay.io/biocontainers/favites_lite |
singularity registry hpc automated addition for favites_lite |
GEMF, GEMF_FAVITES.py, coatran_constant, coatran_expgrowth, coatran_inftime, coatran_transtree, favites_lite.py, ngg_barabasi_albert, ngg_barbell, ngg_complete, ngg_cycle, ngg_empty, ngg_erdos_renyi, ngg_newman_watts_strogatz, ngg_path, ngg_ring_lattice, seq-gen, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/fba |
shpc-registry automated BioContainers addition for fba |
fba, umi_tools, igzip, pbunzip2, pbzcat, pbzip2, numba, pycc, pigz, unpigz, fonttools, pyftmerge |
|
GITHUB
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quay.io/biocontainers/fcp |
shpc-registry automated BioContainers addition for fcp |
AddModel.py, BLASTN.py, BuildBlastDB.py, Epsilon-NB.py, FCP_install.py, LCA+Epsilon-NB.py, LCA.py, NB-BL.py, TaxonomicSummary.py, aalookup_unit_test, aascan_unit_test, align_format_unit_test, bdbloader_unit_test, bl2seq_unit_test, blast_format_unit_test, blast_services_unit_test, blast_unit_test, blastdb_format_unit_test, blastdiag_unit_test, blastengine_unit_test, blastextend_unit_test, blastfilter_unit_test, blasthits_unit_test, blastinput_unit_test, blastoptions_unit_test, blastsetup_unit_test, delta_unit_test, gapinfo_unit_test, gencode_singleton_unit_test, gene_info_unit_test, hspfilter_besthit_unit_test, hspfilter_culling_unit_test, hspstream_unit_test, linkhsp_unit_test, magicblast_unit_test, msa2pssm_unit_test, nb-classify, nb-train, ntlookup_unit_test, ntscan_unit_test, optionshandle_unit_test, phiblast_unit_test, prelimsearch_unit_test, psibl2seq_unit_test, psiblast_iteration_unit_test, psiblast_unit_test, pssmcreate_unit_test, pssmenginefreqratios_unit_test, querydata_unit_test, queryinfo_unit_test, redoalignment_unit_test, remote_blast_unit_test, rps_unit_test, scoreblk_unit_test, search_strategy_unit_test, seqdb_unit_test, seqinfosrc_unit_test, seqsrc_unit_test, setupfactory_unit_test, split_query_unit_test, stat_unit_test, subj_ranges_unit_test, traceback_unit_test, tracebacksearch_unit_test, uniform_search_unit_test, version_reference_unit_test, writedb_unit_test, test_pcre, easy_install-2.7, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, seedtop, uconv, run_with_lock, blast_formatter |
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GITHUB
|
quay.io/biocontainers/fcsparser |
shpc-registry automated BioContainers addition for fcsparser |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/feature_merge |
shpc-registry automated BioContainers addition for feature_merge |
feature_merge, pbr, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, faidx, 2to3-3.9, idle3.9, pydoc3.9 |
|
GITHUB
|
quay.io/biocontainers/fec |
singularity registry hpc automated addition for fec |
Fec, parse_sam.py, sdust, paftools.js, minimap2, k8, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/feelnc |
shpc-registry automated BioContainers addition for feelnc |
FEELnc_classifier.pl, FEELnc_classifier.pl.bak, FEELnc_codpot.pl, FEELnc_codpot.pl.bak, FEELnc_filter.pl, FEELnc_filter.pl.bak, FEELnc_pipeline.sh, FEELnc_tpLevel2gnLevelClassification.R, FEELnc_tpLevel2gnLevelClassification.R.bak, KmerInShort, fasta_ushuffle, ushuffle, gdlib-config, bam2bedgraph, bp_find-blast-matches.pl, ace.pl, ccconfig, SOAPsh.pl, map, mirrorMappings, mkCSGB2312, mkmapfile |
|
GITHUB
|
quay.io/biocontainers/feems |
singularity registry hpc automated addition for feems |
demes, epsg_tr.py, esri2wkt.py, fio, gcps2vec.py, gcps2wld.py, gdal2tiles.py, gdal2xyz.py, gdal_auth.py, gdal_calc.py, gdal_edit.py, gdal_fillnodata.py, gdal_merge.py, gdal_pansharpen.py, gdal_polygonize.py, gdal_proximity.py, gdal_retile.py, gdal_sieve.py, gdalchksum.py, gdalcompare.py, gdalident.py, gdalimport.py, gdalmove.py, mkgraticule.py, msp, mspms, ogrmerge.py, pct2rgb.py, pyproj, rgb2pct.py, tskit, testepsg, pg_standby, gdal_create, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, dap-config, dap-config-pkgconfig, gdal-config, gdal_contour, gdal_grid, gdal_rasterize, gdal_translate, gdaladdo |
|
GITHUB
|
quay.io/biocontainers/fegenie |
shpc-registry automated BioContainers addition for fegenie |
FeGenie.py, aggregateBinDepths.pl, aggregateContigOverlapsByBin.pl, contigOverlaps, jgi_summarize_bam_contig_depths, merge_depths.pl, metabat, metabat1, metabat2, runMetaBat.sh, pandoc-server, diamond, prodigal, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns |
|
GITHUB
|
quay.io/biocontainers/feht |
shpc-registry automated BioContainers addition for feht |
feht |
|
GITHUB
|
quay.io/biocontainers/fermi-lite |
shpc-registry automated BioContainers addition for fermi-lite |
fml-asm |
|
GITHUB
|
quay.io/biocontainers/fermi |
shpc-registry automated BioContainers addition for fermi |
|
|
GITHUB
|
quay.io/biocontainers/ffgc |
singularity registry hpc automated addition for ffgc |
ffgc_create_project.py, markdown-it, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray, mcxassemble, mcxdeblast, mcxdump, mcxi, mcxload, mcxmap, mcxrand, mcxsubs, stone, yte, plac_runner.py, docutils, f2py3.11, pulptest, grpc_cpp_plugin |
|
GITHUB
|
quay.io/biocontainers/ffindex-dbkit |
shpc-registry automated BioContainers addition for ffindex-dbkit |
dbkit_create.py, dbkit_extract.py, dbkit_merge.py, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/ffindex |
shpc-registry automated BioContainers addition for ffindex |
|
|
GITHUB
|
quay.io/biocontainers/ffq |
shpc-registry automated BioContainers addition for ffq |
ffq, xml2-config.bak, normalizer, xslt-config, xsltproc, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/fftw |
shpc-registry automated BioContainers addition for fftw |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/fgap |
shpc-registry automated BioContainers addition for fgap |
FGAP, fgap.m, mkoctfile, mkoctfile-4.2.1, octave, octave-4.2.1, octave-cli, octave-cli-4.2.1, octave-config, octave-config-4.2.1, sndfile-regtest, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set |
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GITHUB
|
quay.io/biocontainers/fgbio-minimal |
singularity registry hpc automated addition for fgbio-minimal |
fgbio, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd |
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GITHUB
|
quay.io/biocontainers/fgbio |
shpc-registry automated BioContainers addition for fgbio |
fgbio, cups-config, ippeveprinter, ipptool, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/fgmp |
shpc-registry automated BioContainers addition for fgmp |
PF00225_full.blocks.txt, PF00225_seed.blocks.txt, SplicedAlignment.pm, aa2nonred.pl, add_name_to_gff3.pl, aln2wig, augustify.py, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, bam2wig, bamToWig.py, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, cdbfasta, cdbyank, cegma2gff.pl, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, compare_masking.pl, compileSpliceCands, computeFlankingRegion.pl, createAugustusJoblist.pl, del_from_prfl.pl, esd2esi, evalCGP.pl, eval_dualdecomp.pl, eval_multi_gtf.pl, executeTestCGP.py, exonerate, exonerate-server, exonerate2hints.pl, exoniphyDb2hints.pl, extractAnno.py, extractTranscriptEnds.pl, fasta2esd, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds, fgmp, filter-ppx.pl, filterGenes.pl, filterGenesIn.pl, filterGenesIn_mRNAname.pl, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, findGffNamesInFasta.pl, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, getAnnoFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, getSeq, get_loci_from_gb.pl, gff2gbSmallDNA.pl, gff2ps_mycustom, gffGetmRNA.pl, gp2othergp.pl, gtf2aa.pl, gtf2gff.pl, gth2gtf.pl, hal2maf_split.pl, helpMod.pm, ipcress, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, load2sqlitedb, lp_solve, maf2conswig.pl, makeMatchLists.pl, makeUtrTrainingSet.pl, maskNregions.pl, merge_masking.pl, moveParameters.pl, msa2prfl.pl, new_species.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, peptides2alternatives.pl, peptides2hints.pl, phastconsDB2hints.pl, polyA2hints.pl, pp_simScore, prints2prfl.pl, pslMap.pl, randomSplit.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, samMap.pl, scipiogff2gff.pl, setStopCodonFreqs.pl, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, splitMfasta.pl, split_wiggle.pl, summarizeACGTcontent.pl, transMap2hints.pl, uniquePeptides.pl, utrgff2gbrowse.pl, utrrnaseq, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, yaml2gff.1.4.pl, augustus, bam2hints, etraining, fastBlockSearch, filterBam, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign, _aaindexextract |
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GITHUB
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quay.io/biocontainers/fgpyo |
singularity registry hpc automated addition for fgpyo |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/fgsv |
singularity registry hpc automated addition for fgsv |
fgsv, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap, jps |
|
GITHUB
|
quay.io/biocontainers/fgwas |
shpc-registry automated BioContainers addition for fgwas |
fgwas, test |
|
GITHUB
|
quay.io/biocontainers/fibertools-rs |
singularity registry hpc automated addition for fibertools-rs |
ft |
|
GITHUB
|
quay.io/biocontainers/ficus |
shpc-registry automated BioContainers addition for ficus |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc, tificc |
|
GITHUB
|
quay.io/biocontainers/fido |
shpc-registry automated BioContainers addition for fido |
Fido, FidoChooseParameters |
|
GITHUB
|
quay.io/biocontainers/figaro |
shpc-registry automated BioContainers addition for figaro |
figaro.py, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc |
|
GITHUB
|
quay.io/biocontainers/figtree |
shpc-registry automated BioContainers addition for figtree |
figtree, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/fiji-max_inscribed_circles |
singularity registry hpc automated addition for fiji-max_inscribed_circles |
ImageJ, ImageJ_bin, bunwarpj, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap, jps |
|
GITHUB
|
quay.io/biocontainers/fiji-morpholibj |
singularity registry hpc automated addition for fiji-morpholibj |
ImageJ, bunwarpj, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs, pack200, rmic, rmid, unpack200, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo |
|
GITHUB
|
quay.io/biocontainers/fiji-omero_ij |
singularity registry hpc automated addition for fiji-omero_ij |
ImageJ, ImageJ_bin, bunwarpj, tjbench, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap |
|
GITHUB
|
quay.io/biocontainers/fiji-simple_omero_client |
singularity registry hpc automated addition for fiji-simple_omero_client |
ImageJ, ImageJ_bin, bunwarpj, tjbench, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap |
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GITHUB
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quay.io/biocontainers/filechunkio |
shpc-registry automated BioContainers addition for filechunkio |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/filesendercli |
singularity registry hpc automated addition for filesendercli |
filesender, idle3.13, pydoc3.13, python3.13, python3.13-config, normalizer |
|
GITHUB
|
quay.io/biocontainers/filtlong |
shpc-registry automated BioContainers addition for filtlong |
filtlong |
|
GITHUB
|
quay.io/biocontainers/find_circ |
singularity registry hpc automated addition for find_circ |
cmp_bed.py, find_circ.py, maxlength.py, merge_bed.py, unmapped2anchors.py, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
|
quay.io/biocontainers/find_differential_primers |
shpc-registry automated BioContainers addition for find_differential_primers |
_gdlib-config, find_differential_primers.py, long_seq_tm_test, ntdpal, oligotm, perl5.30.3, primer3_core, _bdftogd, _gd2copypal, _gd2togif, _gd2topng, _gdcmpgif, _gdparttopng, _gdtopng, _giftogd2, _pngtogd, _pngtogd2 |
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GITHUB
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quay.io/biocontainers/finemap |
singularity registry hpc automated addition for finemap |
finemap |
|
GITHUB
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quay.io/biocontainers/fineradstructure |
shpc-registry automated BioContainers addition for fineradstructure |
RADpainter, finestructure |
|
GITHUB
|
quay.io/biocontainers/finestructure |
shpc-registry automated BioContainers addition for finestructure |
beagle2chromopainter.pl, chromopainter2chromopainterv2.pl, convertrecfile.pl, fs, impute2chromopainter.pl, makeuniformrecfile.pl, msms2cp.pl, phasescreen.pl, phasesubsample.pl, plink2chromopainter.pl, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/fingerprintscan |
shpc-registry automated BioContainers addition for fingerprintscan |
fingerPRINTScan |
|
GITHUB
|
quay.io/biocontainers/fings |
shpc-registry automated BioContainers addition for fings |
fings, vcf_sample_filter.py, vcf_filter.py, vcf_melt, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9 |
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GITHUB
|
quay.io/biocontainers/fiona |
shpc-registry automated BioContainers addition for fiona |
epsg_tr.py, esri2wkt.py, fio, gcps2vec.py, gcps2wld.py, gdal2tiles.py, gdal2xyz.py, gdal_auth.py, gdal_calc.py, gdal_edit.py, gdal_fillnodata.py, gdal_merge.py, gdal_pansharpen.py, gdal_polygonize.py, gdal_proximity.py, gdal_retile.py, gdal_sieve.py, gdalchksum.py, gdalcompare.py, gdalident.py, gdalimport.py, gdalmove.py, gdalserver, mkgraticule.py, ogrmerge.py, pct2rgb.py, rgb2pct.py, testepsg, pg_standby, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums |
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GITHUB
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quay.io/biocontainers/firecloud |
shpc-registry automated BioContainers addition for firecloud |
bq, docker-credential-gcloud, fissfc, gcloud, gsutil, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, chardetect, 2to3-3.9, idle3.9 |
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GITHUB
|
quay.io/biocontainers/fisher |
shpc-registry automated BioContainers addition for fisher |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/fishtaco |
shpc-registry automated BioContainers addition for fishtaco |
run_fishtaco.py, run_musicc.py, test_fishtaco.py, test_musicc.py, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5, wish8.5 |
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GITHUB
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quay.io/biocontainers/fit_nbinom |
shpc-registry automated BioContainers addition for fit_nbinom |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/fithic |
shpc-registry automated BioContainers addition for fithic |
fithic, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, opj_compress |
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GITHUB
|
quay.io/biocontainers/fitter |
shpc-registry automated BioContainers addition for fitter |
fitter, browse, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp |
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GITHUB
|
quay.io/biocontainers/flaimapper |
shpc-registry automated BioContainers addition for flaimapper |
flaimapper, sslm2sam, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/flair |
shpc-registry automated BioContainers addition for flair |
bam2Bed12, bed_to_psl, deFLAIR, diff_iso_usage, diffsplice_fishers_exact, flair, junctions_from_sam, mark_intron_retention, mark_productivity, normalize_counts_matrix, plot_isoform_usage, predictProductivity, psl_to_bed, psl_to_sequence, sam_to_map, minimap2.py, sdust, paftools.js, minimap2, k8, fonttools, pyftmerge, pyftsubset, ttx, tqdm |
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GITHUB
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quay.io/biocontainers/flams |
singularity registry hpc automated addition for flams |
FLAMS, test_pcre, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs |
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GITHUB
|
quay.io/biocontainers/flanker |
shpc-registry automated BioContainers addition for flanker |
abricate, abricate-get_db, flanker, any2fasta, funzip, unzipsfx, zipgrep, zipinfo, unzip, capnp, capnpc, capnpc-c++, capnpc-capnp |
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GITHUB
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quay.io/biocontainers/flapjack |
shpc-registry automated BioContainers addition for flapjack |
flapjack, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/flash |
shpc-registry automated BioContainers addition for flash |
|
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GITHUB
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quay.io/biocontainers/flash2 |
shpc-registry automated BioContainers addition for flash2 |
flash2 |
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GITHUB
|
quay.io/biocontainers/flashlfq |
shpc-registry automated BioContainers addition for flashlfq |
FlashLFQ, lttng-gen-tp |
|
GITHUB
|
quay.io/biocontainers/flask-admin |
shpc-registry automated BioContainers addition for flask-admin |
flask, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
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quay.io/biocontainers/flask-basicauth |
shpc-registry automated BioContainers addition for flask-basicauth |
flask, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
|
quay.io/biocontainers/flask-bootstrap |
shpc-registry automated BioContainers addition for flask-bootstrap |
flask, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
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quay.io/biocontainers/flask-bower |
shpc-registry automated BioContainers addition for flask-bower |
flask, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/flask-markdown |
shpc-registry automated BioContainers addition for flask-markdown |
flask, easy_install-3.5, markdown_py, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config |
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GITHUB
|
quay.io/biocontainers/flask-nav |
shpc-registry automated BioContainers addition for flask-nav |
flask, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
|
quay.io/biocontainers/flask-potion |
shpc-registry automated BioContainers addition for flask-potion |
flask, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5 |
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GITHUB
|
quay.io/biocontainers/flask-script |
shpc-registry automated BioContainers addition for flask-script |
flask, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5 |
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GITHUB
|
quay.io/biocontainers/flask-sqlalchemy |
shpc-registry automated BioContainers addition for flask-sqlalchemy |
flask, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5 |
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GITHUB
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quay.io/biocontainers/flexbar |
shpc-registry automated BioContainers addition for flexbar |
flexbar |
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GITHUB
|
quay.io/biocontainers/flexi-formatter |
singularity registry hpc automated addition for flexi-formatter |
flexi_formatter, pileup.py, typer, annot-tsv, markdown-it, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, pygmentize, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl |
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GITHUB
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quay.io/biocontainers/flexiformatter |
singularity registry hpc automated addition for flexiformatter |
flexiformatter, idle3.13, pileup.py, pydoc3.13, python3.13, python3.13-config, typer, annot-tsv, markdown-it, pygmentize, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim, wgsim_eval.pl, samtools |
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GITHUB
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quay.io/biocontainers/flexiplex |
singularity registry hpc automated addition for flexiplex |
flexiplex, flexiplex-filter, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/flexserv |
singularity registry hpc automated addition for flexserv |
bd, diaghess, dmdgoopt, lorellnma, mc-eigen-mdweb.pl, mc-eigen.pl, nmanu.pl, pca_anim_mc.pl |
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GITHUB
|
quay.io/biocontainers/flexsweep |
singularity registry hpc automated addition for flexsweep |
checksum-profile, demes, elastishadow, flexsweep, protoc-27.5.0, torch_shm_manager, flatc, nosetests-3.9, dask, import_pb_to_tensorboard, isympy, nosetests, torchrun, dask-scheduler, dask-ssh, dask-worker, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, estimator_ckpt_converter, convert-caffe2-to-onnx, convert-onnx-to-caffe2, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, h5tools_test_utils |
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GITHUB
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quay.io/biocontainers/flextaxd |
shpc-registry automated BioContainers addition for flextaxd |
flextaxd, flextaxd-create, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/flexynesis |
singularity registry hpc automated addition for flexynesis |
ase, ase-build, ase-db, ase-gui, ase-info, ase-run, community, debugpy, fabric, flexynesis, flexynesis-cli, lightning, papermill, pyaml, rav1e, torch_shm_manager, SvtAv1EncApp, dav1d, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, tiff2fsspec, aomdec, aomenc, protoc-25.3.0, tiffcomment, jupyter-execute, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, imageio_download_bin |
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GITHUB
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quay.io/biocontainers/flight-genome |
shpc-registry automated BioContainers addition for flight-genome |
flight, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/flippyr |
shpc-registry automated BioContainers addition for flippyr |
flippyr, faidx, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/flock |
shpc-registry automated BioContainers addition for flock |
cent_adjust, flock1, flock2 |
|
GITHUB
|
quay.io/biocontainers/floria |
singularity registry hpc automated addition for floria |
floria, vartig-dump |
|
GITHUB
|
quay.io/biocontainers/flowcraft |
shpc-registry automated BioContainers addition for flowcraft |
flowcraft, nextflow, nextflow.bak, giffilter, gifsponge, gifecho, gifinto, basenc, b2sum, base32, base64, basename, cat |
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GITHUB
|
quay.io/biocontainers/flumut |
singularity registry hpc automated addition for flumut |
flumut, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
|
quay.io/biocontainers/flumutdb |
singularity registry hpc automated addition for flumutdb |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/flux-simulator |
shpc-registry automated BioContainers addition for flux-simulator |
flux-simulator, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
|
quay.io/biocontainers/flye |
shpc-registry automated BioContainers addition for flye |
flye, flye-minimap2, flye-modules, flye-samtools, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/fmlrc |
shpc-registry automated BioContainers addition for fmlrc |
|
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GITHUB
|
quay.io/biocontainers/fmlrc2 |
shpc-registry automated BioContainers addition for fmlrc2 |
fmlrc2, fmlrc2-convert, starcode |
|
GITHUB
|
quay.io/biocontainers/fmsi |
singularity registry hpc automated addition for fmsi |
fmsi |
|
GITHUB
|
quay.io/biocontainers/focus |
shpc-registry automated BioContainers addition for focus |
focus, focus_database_utils, funzip, unzipsfx, zipgrep, zipinfo, unzip, jellyfish, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10 |
|
GITHUB
|
quay.io/biocontainers/foldcomp |
singularity registry hpc automated addition for foldcomp |
foldcomp |
|
GITHUB
|
quay.io/biocontainers/foldmason |
singularity registry hpc automated addition for foldmason |
foldmason, aria2c, gawk-5.3.0, gawkbug, awk, gawk, idn2, wget |
|
GITHUB
|
quay.io/biocontainers/foldseek |
shpc-registry automated BioContainers addition for foldseek |
aria2c, foldseek, gawk-5.1.0, awk, gawk, idn2, wget, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/footprint |
shpc-registry automated BioContainers addition for footprint |
find_footprints.sh, gawk-5.1.0, awk, gawk, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam |
|
GITHUB
|
quay.io/biocontainers/forceatlas2-python |
shpc-registry automated BioContainers addition for forceatlas2-python |
appletviewer, idlj, orbd, schemagen, servertool, tnameserv, wsgen, wsimport, xjc, jaotc |
|
GITHUB
|
quay.io/biocontainers/forgi |
shpc-registry automated BioContainers addition for forgi |
compare_RNA.py, describe_cg.py, forgi_config.py, pseudoknot_analyzer.py, rnaConvert.py, visualize_rna.py, f2py3.6, futurize, pasteurize, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config |
|
GITHUB
|
quay.io/biocontainers/forked-path |
shpc-registry automated BioContainers addition for forked-path |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/forwardgenomics |
singularity registry hpc automated addition for forwardgenomics |
all_dists, base_evolve, chooseLines, clean_genes, consEntropy, convert_coords, display_rate_matrix, dless, dlessP, draw_tree, eval_predictions, exoniphy, f2py3.11, forwardGenomics.R, forwardGenomics_fullAnalysis.R, forwardGenomics_globalAnalysis.R, forwardGenomics_initialization.R, forwardGenomics_localAnalysis.R, hmm_train, hmm_tweak, hmm_view, indelFit, indelHistory, maf_parse, makeHKY, modFreqs, msa_diff, msa_split, msa_view, pbsDecode, pbsEncode, pbsScoreMatrix, pbsTrain, phast, phastBias, phastCons, phastMotif, phastOdds, phyloBoot, phyloFit, phyloP, prequel, refeature, stringiphy, treeGen, tree_doctor, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, glpsol, python3.1, perl5.32.1, streamzip |
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GITHUB
|
quay.io/biocontainers/fpa |
shpc-registry automated BioContainers addition for fpa |
fpa |
|
GITHUB
|
quay.io/biocontainers/fpocket |
shpc-registry automated BioContainers addition for fpocket |
dpocket, fpocket, mdpocket, tpocket, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/fq |
shpc-registry automated BioContainers addition for fq |
fq |
|
GITHUB
|
quay.io/biocontainers/fqgrep |
singularity registry hpc automated addition for fqgrep |
fqgrep |
|
GITHUB
|
quay.io/biocontainers/fqtk |
singularity registry hpc automated addition for fqtk |
fqtk |
|
GITHUB
|
quay.io/biocontainers/fqtools |
shpc-registry automated BioContainers addition for fqtools |
fqtools, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/fqtrim |
shpc-registry automated BioContainers addition for fqtrim |
fqtrim, gtest, threads |
|
GITHUB
|
quay.io/biocontainers/fqzcomp |
shpc-registry automated BioContainers addition for fqzcomp |
fqz_comp |
|
GITHUB
|
quay.io/biocontainers/frag_gene_scan_rs |
singularity registry hpc automated addition for frag_gene_scan_rs |
FragGeneScanRs |
|
GITHUB
|
quay.io/biocontainers/fragbuilder |
shpc-registry automated BioContainers addition for fragbuilder |
babel, obchiral, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop |
|
GITHUB
|
quay.io/biocontainers/fraggenescan |
shpc-registry automated BioContainers addition for fraggenescan |
FragGeneScan, run_FragGeneScan.pl, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/fragpipe |
singularity registry hpc automated addition for fragpipe |
csc-dim, fragpipe, ionquant, monograph, msfragger, nunit-console, nunit-console2, nunit-console4, philosopher, csc, csi, illinkanalyzer, vbc, mono-package-runtime, sgen-grep-binprot, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr, chktrust, crlupdate, csharp, dmcs, dtd2rng, dtd2xsd, gacutil, gacutil2, genxs, httpcfg, ikdasm |
|
GITHUB
|
quay.io/biocontainers/fraposa-pgsc |
singularity registry hpc automated addition for fraposa-pgsc |
fraposa, fraposa_plot, fraposa_pred, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/frc |
shpc-registry automated BioContainers addition for frc |
FRC, bamtools-2.4.0, bamtools, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
|
GITHUB
|
quay.io/biocontainers/fred2 |
shpc-registry automated BioContainers addition for fred2 |
|
|
GITHUB
|
quay.io/biocontainers/freddie |
singularity registry hpc automated addition for freddie |
Annotation_Load.py, deBGA, deSALT, freddie_cluster.py, freddie_isoforms.py, freddie_segment.py, freddie_split.py, sdust, paftools.js, minimap2, k8, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/freebayes |
shpc-registry automated BioContainers addition for freebayes |
freebayes, freebayes-parallel, generate_freebayes_region_scripts.sh, bamleftalign, coverage_to_regions.py, fasta_generate_regions.py, vcffirstheader, vcfstreamsort, vcfuniq, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh |
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GITHUB
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quay.io/biocontainers/freyja |
shpc-registry automated BioContainers addition for freyja |
faToVcf, fido2-assert, fido2-cred, fido2-token, freyja, ivar, matOptimize, matUtils, ripples, scp, sftp, ssh, ssh-add, ssh-agent, ssh-keygen, ssh-keyscan, sshd, usher, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun |
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GITHUB
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quay.io/biocontainers/frogs |
shpc-registry automated BioContainers addition for frogs |
AbundanceStats, AlignmentTools, Clustering, FrameBot, KmerFilter, ProbeMatch, ReadSeq, SeqFilters, SequenceMatch, affiliation_OTU.py, affiliation_OTU_tpl.html, affiliation_filters.py, affiliation_filters_tpl.html, affiliation_postprocess.py, affiliations_stat.py, affiliations_stat_tpl.html, biom_to_stdBiom.py, biom_to_tsv.py, classifier, classifier.jar, clustering.py, clusters_stat.py, clusters_stat_tpl.html, demultiplex.py, deseq2_preprocess.py, deseq2_visualisation.Rmd, deseq2_visualisation.py, frogsfunc_copynumbers.py, frogsfunc_copynumbers_tpl.html, frogsfunc_functions.py, frogsfunc_functions_tpl.html, frogsfunc_pathways.py, frogsfunc_pathways_tpl.html, frogsfunc_placeseqs.py, frogsfunc_placeseqs_tpl.html, hmmgs, itsx.py, itsx_tpl.html, normalisation.py, normalisation_tpl.html, otu_filters.py, otu_filters_tpl.html, phyloseq_alpha_diversity.Rmd, phyloseq_alpha_diversity.py, phyloseq_beta_diversity.Rmd, phyloseq_beta_diversity.py, phyloseq_clustering.Rmd, phyloseq_clustering.py, phyloseq_composition.Rmd, phyloseq_composition.py, phyloseq_import_data.Rmd, phyloseq_import_data.py, phyloseq_manova.Rmd, phyloseq_manova.py, phyloseq_structure.Rmd, phyloseq_structure.py, preprocess.py, preprocess_tpl.html, remove_chimera.py, remove_chimera_tpl.html, tree.py, tree_tpl.html, tsv_to_biom.py, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
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GITHUB
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quay.io/biocontainers/fsa |
shpc-registry automated BioContainers addition for fsa |
fsa, gapcleaner, isect_mercator_alignment_gff, map_coords, map_gff_coords, percentid, prot2codon, slice_fasta, slice_fasta_gff, slice_mercator_alignment, translate |
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GITHUB
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quay.io/biocontainers/fseq |
shpc-registry automated BioContainers addition for fseq |
fseq, mapviewToBed.pl, perl5.22.0, c2ph, pstruct, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool |
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GITHUB
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quay.io/biocontainers/fsm-lite |
shpc-registry automated BioContainers addition for fsm-lite |
fsm-lite |
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GITHUB
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quay.io/biocontainers/fsnviz |
shpc-registry automated BioContainers addition for fsnviz |
crimson, fsnviz, circos, circos.exe, compile.bat, compile.make, gddiag, list.modules, test.modules, bdf2gdfont.pl, bdftogd, gd2copypal |
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GITHUB
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quay.io/biocontainers/ftputil |
shpc-registry automated BioContainers addition for ftputil |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/fuc |
shpc-registry automated BioContainers addition for fuc |
fuc, tabulate, natsort, xslt-config, xsltproc, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9 |
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GITHUB
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quay.io/biocontainers/fuma |
shpc-registry automated BioContainers addition for fuma |
chimerascan-exclude-transcriptome-events, chimerascan-relative-bedpe-to-CG, defuse-clusters-to-CG, fuma, fuma-gencode-gtf-to-bed, fuma-list-to-boolean-list, fusioncatcher-to-CG, htseq-count-barcodes, htseq-count, htseq-qa, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9 |
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GITHUB
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quay.io/biocontainers/funannotate |
shpc-registry automated BioContainers addition for funannotate |
CodingQuarry, CufflinksGTF_to_CodingQuarryGFF3.py, EukHighConfidenceFilter, PtR, SplicedAlignment.pm, TransDecoder.LongOrfs, TransDecoder.Predict, Trinity, TrinityStats.pl, Trinity_gene_splice_modeler.py, aa2nonred.pl, abundance_estimates_to_matrix.pl, align_and_estimate_abundance.pl, analyze_blastPlus_topHit_coverage.pl, analyze_diff_expr.pl, ann_exons_ens.pl, ann_exons_ncbi.pl, ann_exons_up_sql.pl, ann_exons_up_www.pl, ann_feats2ipr.pl, ann_feats2ipr_e.pl, ann_feats_up_sql.pl, ann_feats_up_www2.pl, ann_ipr_www.pl, ann_pdb_cath.pl, ann_pdb_vast.pl, ann_pfam27.pl, ann_pfam28.pl, ann_pfam30.pl, ann_pfam30_tmptbl.pl, ann_pfam_www.pl, ann_upfeats_pfam_www_e.pl, annot_blast_btop2.pl, atoiindex, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, autoRun.pathInfo, bam2wig, bamToWig.py, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, cdbfasta, cdbyank, cdna_alignment_orf_to_genome_orf.pl, cds-trainer.pl, cegma2gff.pl, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, cmetindex, color_defs.pl, compare_gos.py, compare_masking.pl, compileSpliceCands, computeFlankingRegion.pl, compute_base_probs.pl, contig_ExN50_statistic.pl, covels-SE, coves-SE, cpuid, createAugustusJoblist.pl, dbsnp_iit, define_clusters_by_cutting_tree.pl, del_from_prfl.pl, distro, ensembl_genes, esd2esi, espoca, eufindtRNA, evalCGP.pl, eval_dualdecomp.pl, eval_multi_gtf.pl, evidence_modeler.pl, exclude_similar_proteins.pl, exonerate, exonerate-server, exonerate2hints.pl, exoniphyDb2hints.pl, exonpairs, exp_up_ensg.pl, expand_links.pl, expand_uniref50.pl, extractTranscriptEnds.pl, extract_exons.py, extract_splice_sites.py, extract_supertranscript_from_reference.py, fa_coords, fasta, fasta2esd, fasta2gsi, fasta36, fasta_prot_checker.pl, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds, fastf36, fastm36, fasts36, fastx36, fasty36, fathom, fetch_associations.py, ffindex_resume.pl, filter-ppx.pl, filterGenes.pl, filterGenesIn.pl, filterGenesIn_mRNAname.pl, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, filter_low_expr_transcripts.pl, findGffNamesInFasta.pl, find_enrichment.py, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, forge, funannotate, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, gene_list_to_gff.pl, get-genome, getAnnoFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, getSeq, get_FL_accs.pl, get_Trinity_gene_to_trans_map.pl, get_longest_ORF_per_transcript.pl, get_top_longest_fasta_entries.pl, gff2gbSmallDNA.pl, gff2ps_mycustom, gff3_file_to_bed.pl, gff3_file_to_proteins.pl, gff3_gene_to_gtf_format.pl, gff3_genes, gff3_introns, gff3_splicesites, gffGetmRNA.pl, ggsearch36, glsearch36, gmap.nosimd, gmap.sse42, gmap_build, gmap_compress, gmap_process, gmap_reassemble, gmap_uncompress, gmapindex, gmapl, gmapl.nosimd, gmapl.sse42, go_plot.py, gp2othergp.pl, gsnap, gsnap.nosimd, gsnap.sse42, gsnapl, gsnapl.nosimd, gsnapl.sse42, gss-server, gtf2aa.pl, gtf2gff.pl, gtf_genes, gtf_genome_to_cdna_fasta.pl, gtf_introns, gtf_splicesites, gtf_to_alignment_gff3.pl, gtf_to_bed.pl, gtf_transcript_splicesites, gth2gtf.pl, gvf_iit, hal2maf_split.pl, helpMod.pm, hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, hmm-assembler.pl, hmm-info, iit_dump, iit_get, iit_store, insilico_read_normalization.pl, ipcress, iqtree2, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, kadmin.local, kadmind, kallisto, kdb5_util, kprop, kpropd, kproplog, krb5-send-pr, krb5kdc, lalign36, lav2plt.pl, lavplt_ps.pl, lavplt_svg.pl, lighttpd, lighttpd-angel, links2sql.pl, load2sqlitedb, lp_solve, m8_btop_msa.pl, m9B_btop_msa.pl, maf2conswig.pl, makeMatchLists.pl, makeUtrTrainingSet.pl, map_db, map_to_slim.py, maskNregions.pl, md_coords, merge_blast_btab.pl, merge_masking.pl, moveParameters.pl, msa2prfl.pl, ncbi_gene_results_to_python.py, new_species.pl, noncoding-trainer.pl, nr_ORFs_gff3.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, parse_m9.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, patch-hmm.pl, peptides2alternatives.pl, peptides2hints.pl, pfam_runner.pl, phastconsDB2hints.pl, phyml, phyml-mpi, phyrex, phytime, plot_go_term.py, pluginviewer, polyA2hints.pl, prepDE.py, prints2prfl.pl, proteinortho, proteinortho2html.pl, proteinortho2tree.pl, proteinortho2xml.pl, proteinortho6.pl, proteinortho_cleanupblastgraph, proteinortho_clustering, proteinortho_compareProteinorthoGraphs.pl, proteinortho_do_mcl.pl, proteinortho_extract_from_graph.pl, proteinortho_ffadj_mcs.py, proteinortho_formatUsearch.pl, proteinortho_grab_proteins.pl, proteinortho_graphMinusRemovegraph, proteinortho_history.pl, proteinortho_singletons.pl, proteinortho_summary.pl, proteinortho_treeBuilderCore, prt_terms.py, pslCDnaFilter, pslMap.pl, psl_genes, psl_introns, psl_splicesites, randomSplit.pl, ratewig.pl, refine_gff3_group_iso_strip_utrs.pl, refine_hexamer_scores.pl, remove_eclipsed_ORFs.pl, res2R.pl, retrieve_sequences_from_fasta.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, run_CQ-PM_mine.sh, run_CQ-PM_stranded.sh, run_CQ-PM_unstranded.sh, run_DE_analysis.pl, run_DE_analysis_from_samples_file.pl, samMap.pl, sam_sort, saslauthd, scipiogff2gff.pl, score_CDS_likelihood_all_6_frames.pl, select_best_ORFs_per_transcript.pl, seq_n_baseprobs_to_loglikelihood_vals.pl, seqtk-trinity, setStopCodonFreqs.pl, shuffle_embed.pl, sift_bam_max_cov.pl, sim_server, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, slclust, snap, snpindex, splitMfasta.pl, split_wiggle.pl, ssearch36, sserver, sstofa, start_codon_refinement.pl, stringtie, summ_domain_ident.pl, summarizeACGTcontent.pl, tRNAscan-SE, tRNAscan-SE.conf, tantan, testsaslauthd, tfastf36, tfastm36, tfasts36, tfastx36, tfasty36, train_start_PWM.pl, transMap2hints.pl, trnascan-1.4, uniqscan, uniqscanl, uniquePeptides.pl, uri_unescape.pl, utrgff2gbrowse.pl, utrrnaseq, uuserver, vcf_iit, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, wr_hier.py, wr_sections.py, writeResultsPage.pl, yaml2gff.1.4.pl, zff2gff3.pl, augustus, bam2hints, etraining, fastBlockSearch, filterBam, gmap, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign |
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GITHUB
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quay.io/biocontainers/funcannot |
shpc-registry automated BioContainers addition for funcannot |
funcannot, qdoc3, qmlviewer, qt3to4, qtconfig, qttracereplay, qhelpconverter, qdbus, qdbuscpp2xml, qdbusviewer, qdbusxml2cpp, xmlpatterns, xmlpatternsvalidator, assistant, designer, lconvert |
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GITHUB
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quay.io/biocontainers/functools32 |
shpc-registry automated BioContainers addition for functools32 |
smtpd.pyc, easy_install-2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5 |
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GITHUB
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quay.io/biocontainers/funnel |
shpc-registry automated BioContainers addition for funnel |
funnel |
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GITHUB
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quay.io/biocontainers/fununifrac |
singularity registry hpc automated addition for fununifrac |
compute_edges.py, compute_fununifrac.py, create_edge_matrix.py, tjbench, numba, pycc, py.test, pytest, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/fusepy |
shpc-registry automated BioContainers addition for fusepy |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/fusion-filter |
shpc-registry automated BioContainers addition for fusion-filter |
atoiindex, blast_and_promiscuity_filter.pl, blast_check_pair.pl, blast_filter.pl, blast_outfmt6_replace_trans_id_w_gene_symbol.pl, build_chr_gene_alignment_index.pl, build_fusion_annot_db_index.pl, build_prot_info_db.pl, cmetindex, cpuid, dbsnp_iit, ensembl_genes, fa_coords, gencode_extract_relevant_gtf_exons.pl, get-genome, gff3_genes, gff3_introns, gff3_splicesites, gmap.nosimd, gmap.sse42, gmap_build, gmap_cat, gmap_process, gmapindex, gmapl, gmapl.nosimd, gmapl.sse42, gsnap, gsnap.nosimd, gsnap.sse42, gsnapl, gsnapl.nosimd, gsnapl.sse42, gtf_file_to_feature_seqs.pl, gtf_genes, gtf_introns, gtf_splicesites, gtf_to_exon_gene_records.pl, gtf_to_gene_spans.pl, gtf_transcript_splicesites, gvf_iit, iit_dump, iit_get, iit_store, index_blast_pairs.pl, index_blast_pairs.remove_gene_pair.pl, index_blast_pairs.remove_overlapping_genes.pl, index_cdna_seqs.pl, index_pfam_domain_info.pl, indexdb_cat, isoform_blast_gene_chr_conversion.pl, isoform_blast_mapping_indexer.pl, just_blast_test.pl, make_super_locus.pl, md_coords, prep_genome_lib.pl, promiscuity_filter.pl, psl_genes, psl_introns, psl_splicesites, remove_long_intron_readthru_transcripts.pl, sam_sort, snpindex, trindex, vcf_iit, gmap, STAR, STARlong, blast_report, blastdb_convert, blastdb_path, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv |
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GITHUB
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quay.io/biocontainers/fusion-inspector |
shpc-registry automated BioContainers addition for fusion-inspector |
FusionInspector, PtR, Trinity, TrinityStats.pl, Trinity_gene_splice_modeler.py, abundance_estimates_to_matrix.pl, align_and_estimate_abundance.pl, analyze_blastPlus_topHit_coverage.pl, analyze_diff_expr.pl, atoiindex, cmetindex, contig_ExN50_statistic.pl, cpuid, dbsnp_iit, define_clusters_by_cutting_tree.pl, ensembl_genes, extract_supertranscript_from_reference.py, fa_coords, filter_low_expr_transcripts.pl, get-genome, get_Trinity_gene_to_trans_map.pl, gff3_genes, gff3_introns, gff3_splicesites, gmap.sse42, gmap_build, gmap_compress, gmap_process, gmap_reassemble, gmap_uncompress, gmapindex, gmapl, gmapl.sse42, gsnap, gsnap.sse42, gsnapl, gsnapl.sse42, gtf_genes, gtf_introns, gtf_splicesites, gtf_transcript_splicesites, gvf_iit, iit_dump, iit_get, iit_store, insilico_read_normalization.pl, md_coords, psl_genes, psl_introns, psl_splicesites, retrieve_sequences_from_fasta.pl, run_DE_analysis.pl, run_DE_analysis_from_samples_file.pl, sam_sort, seqtk-trinity, sift_bam_max_cov.pl, snpindex, trindex, vcf_iit, gmap, salmon, STAR, STARlong, giffilter, gifsponge, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s |
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GITHUB
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quay.io/biocontainers/fusion-report |
shpc-registry automated BioContainers addition for fusion-report |
fusion_report, tqdm, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/fusioncatcher-seqtk |
shpc-registry automated BioContainers addition for fusioncatcher-seqtk |
seqtk |
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GITHUB
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quay.io/biocontainers/fusioncatcher |
shpc-registry automated BioContainers addition for fusioncatcher |
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GITHUB
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quay.io/biocontainers/fwdpp |
shpc-registry automated BioContainers addition for fwdpp |
fwdppConfig |
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GITHUB
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quay.io/biocontainers/fwdpy |
shpc-registry automated BioContainers addition for fwdpy |
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GITHUB
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quay.io/biocontainers/fwdpy11 |
shpc-registry automated BioContainers addition for fwdpy11 |
tskit, numba, pycc, f2py3.6, jsonschema, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m |
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GITHUB
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quay.io/biocontainers/fxtract |
singularity registry hpc automated addition for fxtract |
fxtract |
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GITHUB
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quay.io/biocontainers/ga4ghmongo |
shpc-registry automated BioContainers addition for ga4ghmongo |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/gaas |
shpc-registry automated BioContainers addition for gaas |
bp_einfo, bp_genbank_ref_extractor, gaas_AGP2chromosome.pl, gaas_add_track.rb, gaas_apollo_track_helper.rb, gaas_augustus2grid.pl, gaas_augustus_create_hints.rb, gaas_bam2bigwig.sh, gaas_bam_to_wiggle.py, gaas_bed2wiggle.rb, gaas_bed_create_random_feature.pl, gaas_blastp2grid.pl, gaas_blat2grid.pl, gaas_build_template_WA_1_0_X.rb, gaas_cp_all_links.sh, gaas_create_annotation_project.pl, gaas_create_annotation_project.rb, gaas_create_delivery_dir.sh, gaas_create_preautomated_report.pl, gaas_cufflinks2hints.rb, gaas_embl2gb.pl, gaas_eugene2maker.rb, gaas_exonerate2grid.pl, gaas_fasta_bionano_filter_not_scaffolded_part.pl, gaas_fasta_checkProteins.pl, gaas_fasta_cleaner.pl, gaas_fasta_domain_extractor.pl, gaas_fasta_extractFaFromMultiFa.sh, gaas_fasta_extract_sequence_from_OG.pl, gaas_fasta_extract_sequence_from_id.pl, gaas_fasta_filter_by_size.pl, gaas_fasta_get_longestORF.pl, gaas_fasta_purify.pl, gaas_fasta_removeFromFasta1_intersection_withFasta2ID.pl, gaas_fasta_removeSeqFromIDlist.pl, gaas_fasta_splitMultFastaFile.sh, gaas_fasta_splitter.pl, gaas_fasta_statistics.pl, gaas_fastq_check_sync_pair1_pair2.pl, gaas_fastq_deinterleave_bash.pl, gaas_fastq_guessMyFormat.pl, gaas_fastq_interleave.py, gaas_fastq_pairfq_lite.pl, gaas_gb2embl.pl, gaas_info_BioPerlVersion.sh, gaas_info_find_perl_module.sh, gaas_install_WA_2_0_X.rb, gaas_interpro2grid.pl, gaas_junctions2hints.pl, gaas_lastz2grid.pl, gaas_maker_AEDmeanInGffFile.sh, gaas_maker_AEDplot.pl, gaas_maker_check_progress.sh, gaas_maker_check_progress_deeply.sh, gaas_maker_get_rid_of_contig.pl, gaas_maker_get_rm_genome.pl, gaas_maker_merge_outputs_from_datastore.pl, gaas_maker_merge_outputs_from_index.pl, gaas_maker_moveResultsSafely.sh, gaas_manage_backup.sh, gaas_manage_species.rb, gaas_multiplotAll.R, gaas_ncbi_get_genome_tree.pl, gaas_ncbi_get_reference_data.pl, gaas_ncbi_get_sequence_from_list.pl, gaas_new_species_WA_1_0_X.rb, gaas_orthomcl_analyzeOG.pl, gaas_pasa_create_chunks.rb, gaas_pasa_find_duplicates.rb, gaas_pfam2grid.pl, gaas_prep-contigs.sh, gaas_prepare_matrice_by_window.pl, gaas_protein2hints.rb, gaas_removeIsoforms.sh, gaas_reveal_hidden_characters.pl, gaas_rfam2apollo.rb, gaas_rfam2grid.pl, gaas_rs_PlotDensityAEDFromMakerAnnotationFiles.R, gaas_rs_PlotDensityOneRowPerFile.R, gaas_scaffold2AGP.pl, gaas_scipio2grid.pl, gaas_screen_mito_tblastn.pl, gaas_setup_rakefile.rb, gaas_snap_train.sh, gaas_sr_AllResu_AllIntervalPlotMean.R, gaas_sr_MadeGraphAndRegByInterval.R, gaas_sr_Mean2col_AllIntervalPlotMean.R, gaas_sr_Mean2col_PlotPoints.R, gaas_sr_Mean2col_PlotPointsAndRegs.R, gaas_sync_dat_and_embl.pl, gaas_sync_user_db.rb, gaas_synplot.R, gaas_synplot.pl, gaas_tblastn2grid.pl, gaas_transplant.rb, gaas_transposonPSI2grid.pl, gaas_trnascan2grid.pl, gaas_unlink_all.sh, gdlib-config, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml, basemlg, chi2, codeml, evolver |
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GITHUB
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quay.io/biocontainers/gadem |
shpc-registry automated BioContainers addition for gadem |
gadem |
|
GITHUB
|
quay.io/biocontainers/gadma |
shpc-registry automated BioContainers addition for gadma |
demes, gadma, gadma-get_confidence_intervals, gadma-get_confidence_intervals_for_ld, gadma-precompute_ld_data, gadma-run_ls_on_boot_data, dask-scheduler, dask-ssh, dask-worker, bokeh, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.8 |
|
GITHUB
|
quay.io/biocontainers/gafpack |
singularity registry hpc automated addition for gafpack |
gafpack |
|
GITHUB
|
quay.io/biocontainers/gaftools |
singularity registry hpc automated addition for gaftools |
gaftools, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config |
|
GITHUB
|
quay.io/biocontainers/gait-gm |
shpc-registry automated BioContainers addition for gait-gm |
add_group_rank.py, add_kegg_anno_info.py, add_kegg_pathway_info.py, add_pval_flags.py, all_by_all_correlation.py, anova_fixed.py, bland_altman_plot.py, blank_feature_filtering_flags.py, coefficient_variation_flags.py, compare_flags.py, compound_identification.py, data_normalization_and_rescaling.py, distribution_features.py, distribution_samples.py, ensembl2symbol.py, hierarchical_clustering_heatmap.py, imputation.py, kruskal_wallis.py, lasso_enet_var_select.py, linear_discriminant_analysis.py, log_and_glog_transformation.py, magnitude_difference_flags.py, mahalanobis_distance.py, merge_flags.py, modify_design_file.py, modulated_modularity_clustering.py, multiple_testing_adjustment.py, mzrt_match.py, partial_least_squares.py, principal_component_analysis.py, random_forest.py, remove_selected_features_samples.py, remove_user_specified_row_col.py, retention_time_flags.py, run_order_regression.py, sPLS.py, scatter_plot_2D.py, scatter_plot_3D.py, split_wide_dataset.py, standardized_euclidean_distance.py, subset_data.py, summarize_flags.py, svm_classifier.py, tab-to-vcf, threshold_based_flags.py, ttest.py, ttest_perm.py, ttest_single_group.py, vcf-haplotypes, fill-aa, fill-an-ac, fill-fs, fill-ref-md5, vcf-annotate, vcf-compare, vcf-concat, vcf-consensus, vcf-contrast, vcf-convert |
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GITHUB
|
quay.io/biocontainers/galah |
shpc-registry automated BioContainers addition for galah |
dashing, galah, fastANI, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/galaxy-containers |
shpc-registry automated BioContainers addition for galaxy-containers |
cheetah, cheetah-analyze, cheetah-compile, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py, rst2xetex.py |
|
GITHUB
|
quay.io/biocontainers/galaxy-data |
shpc-registry automated BioContainers addition for galaxy-data |
bagit.py, bagit_profile.py, bdbag, bdbag-utils, cheetah, cheetah-analyze, cheetah-compile, galaxy-build-objects, galaxy-manage-db, gx-fastq-combiner, gx-fastq-filter, gx-fastq-groomer, gx-fastq-manipulation, gx-fastq-masker-by-quality, gx-fastq-paired-end-deinterlacer, gx-fastq-paired-end-interlacer, gx-fastq-paired-end-joiner, gx-fastq-paired-end-splitter, gx-fastq-stats, gx-fastq-to-fasta, gx-fastq-to-tabular, gx-fastq-trimmer, gx-fastq-trimmer-by-quality, migrate, migrate-repository, sqlformat, pbr, docutils, pybabel, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py |
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GITHUB
|
quay.io/biocontainers/galaxy-files |
singularity registry hpc automated addition for galaxy-files |
cheetah, cheetah-analyze, cheetah-compile, docutils, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py, rst2xetex.py, rst2xml.py, rstpep2html.py, futurize, pasteurize, normalizer, python3.1 |
|
GITHUB
|
quay.io/biocontainers/galaxy-ie-helpers |
shpc-registry automated BioContainers addition for galaxy-ie-helpers |
get, get_user_history, put, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier |
|
GITHUB
|
quay.io/biocontainers/galaxy-ml |
shpc-registry automated BioContainers addition for galaxy-ml |
flatc, import_pb_to_tensorboard, xgboost, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, pyrsa-decrypt |
|
GITHUB
|
quay.io/biocontainers/galaxy-objectstore |
shpc-registry automated BioContainers addition for galaxy-objectstore |
cheetah, cheetah-analyze, cheetah-compile, docutils, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py |
|
GITHUB
|
quay.io/biocontainers/galaxy-ops |
shpc-registry automated BioContainers addition for galaxy-ops |
aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
|
GITHUB
|
quay.io/biocontainers/galaxy-parsec |
shpc-registry automated BioContainers addition for galaxy-parsec |
bioblend-galaxy-tests, parsec, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier |
|
GITHUB
|
quay.io/biocontainers/galaxy-schema |
singularity registry hpc automated addition for galaxy-schema |
cheetah, cheetah-analyze, cheetah-compile, email_validator, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex, rst2xml, docutils, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, futurize, pasteurize, normalizer |
|
GITHUB
|
quay.io/biocontainers/galaxy-tool-util |
shpc-registry automated BioContainers addition for galaxy-tool-util |
cheetah, cheetah-analyze, cheetah-compile, galaxy-tool-test, mulled-build, mulled-build-channel, mulled-build-files, mulled-build-tool, mulled-list, mulled-search, mulled-update-singularity-containers, conda-env, cph, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py |
|
GITHUB
|
quay.io/biocontainers/galaxy-upload |
shpc-registry automated BioContainers addition for galaxy-upload |
bioblend-galaxy-tests, galaxy-history-search, galaxy-upload, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier |
|
GITHUB
|
quay.io/biocontainers/galaxy-util |
shpc-registry automated BioContainers addition for galaxy-util |
cheetah, cheetah-analyze, cheetah-compile, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py, rst2xetex.py |
|
GITHUB
|
quay.io/biocontainers/galaxy-workflow-executor |
shpc-registry automated BioContainers addition for galaxy-workflow-executor |
bioblend-galaxy-tests, generate_params_from_workflow.py, run_galaxy_workflow.py, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier |
|
GITHUB
|
quay.io/biocontainers/galaxy_sequence_utils |
shpc-registry automated BioContainers addition for galaxy_sequence_utils |
gx-fastq-combiner, gx-fastq-filter, gx-fastq-groomer, gx-fastq-manipulation, gx-fastq-masker-by-quality, gx-fastq-paired-end-deinterlacer, gx-fastq-paired-end-interlacer, gx-fastq-paired-end-joiner, gx-fastq-paired-end-splitter, gx-fastq-stats, gx-fastq-to-fasta, gx-fastq-to-tabular, gx-fastq-trimmer, gx-fastq-trimmer-by-quality, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/galaxyxml |
shpc-registry automated BioContainers addition for galaxyxml |
futurize, pasteurize, xslt-config, xsltproc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/galitime |
singularity registry hpc automated addition for galitime |
galitime, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/galru |
shpc-registry automated BioContainers addition for galru |
galru, galru_create_database, galru_create_species, galru_shrink_database, mlst, ncbi-genome-download, ngd, any2fasta, fastaq, minced, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl |
|
GITHUB
|
quay.io/biocontainers/gambit |
singularity registry hpc automated addition for gambit |
alembic, gambit, mako-render, f2py3.9, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp, h5perf_serial, h5redeploy, h5repack, h5repart, h5stat, h5unjam, h5dump, h5cc, 2to3-3.9 |
|
GITHUB
|
quay.io/biocontainers/gametes |
singularity registry hpc automated addition for gametes |
gametes, jwebserver, pcre2posix_test, jpackage, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, cups-config, ippeveprinter, ipptool, hb-info, tjbench, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java |
|
GITHUB
|
quay.io/biocontainers/gamma |
shpc-registry automated BioContainers addition for gamma |
GAMMA-S.py, GAMMA.py, faToNib, gfClient, gfServer, nibFrag, pslPretty, pslReps, pslSort, twoBitToFa, blat, unidecode, twoBitInfo, faToTwoBit, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1 |
|
GITHUB
|
quay.io/biocontainers/gangstr |
shpc-registry automated BioContainers addition for gangstr |
GangSTR, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config, htsfile, bgzip, tabix |
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GITHUB
|
quay.io/biocontainers/ganon |
shpc-registry automated BioContainers addition for ganon |
binpacking, ganon, ganon-build, ganon-classify, ganon-get-seq-info.sh, taxsbp, egrep, fgrep, grep, tar, gawk-5.1.0, basenc, b2sum, awk, base32, base64 |
|
GITHUB
|
quay.io/biocontainers/gap |
shpc-registry automated BioContainers addition for gap |
|
|
GITHUB
|
quay.io/biocontainers/gap2seq |
shpc-registry automated BioContainers addition for gap2seq |
Gap2Seq, Gap2Seq-core, GapCutter, GapMerger, ReadFilter, htsfile, bgzip, tabix, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/gapfiller |
shpc-registry automated BioContainers addition for gapfiller |
GapFiller |
|
GITHUB
|
quay.io/biocontainers/gapless |
singularity registry hpc automated addition for gapless |
f2py3.11, gapless.py, gapless.sh, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/gapmm2 |
singularity registry hpc automated addition for gapmm2 |
gapmm2, minimap2.py, natsort, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/gappa |
shpc-registry automated BioContainers addition for gappa |
gappa |
|
GITHUB
|
quay.io/biocontainers/gapseq |
singularity registry hpc automated addition for gapseq |
gapseq, install_archived_sybilSBML.sh, update_sequences.sh, esd2esi, exonerate, exonerate-server, fasta2esd, fastaannotatecdna, fastachecksum, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasubseq, fastatranslate, fastavalidcds, ipcress |
|
GITHUB
|
quay.io/biocontainers/gargammel-slim |
shpc-registry automated BioContainers addition for gargammel-slim |
adptSim, deamSim, fragSim |
|
GITHUB
|
quay.io/biocontainers/gargammel |
shpc-registry automated BioContainers addition for gargammel |
|
|
GITHUB
|
quay.io/biocontainers/garnet |
shpc-registry automated BioContainers addition for garnet |
easy_install-3.6, qhelpconverter, pylupdate5, pyrcc5, pyuic5, sip, qdoc, gst-device-monitor-1.0, gst-discoverer-1.0, gst-play-1.0 |
|
GITHUB
|
quay.io/biocontainers/garnett-cli |
shpc-registry automated BioContainers addition for garnett-cli |
garnett_check_markers.R, garnett_classify_cells.R, garnett_cli_post_install_tests.bats, garnett_cli_post_install_tests.sh, garnett_get_feature_genes.R, garnett_train_classifier.R, make_test_data.R, parse_expr_data.R, build_env_setup.sh, conda_build.sh, gio-launch-desktop, c89, c99 |
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GITHUB
|
quay.io/biocontainers/gassst |
singularity registry hpc automated addition for gassst |
Gassst |
|
GITHUB
|
quay.io/biocontainers/gat |
shpc-registry automated BioContainers addition for gat |
gat-compare.py, gat-great.py, gat-plot.py, gat-run.py, msgattrib, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, qwebengine_convert_dict |
|
GITHUB
|
quay.io/biocontainers/gatb |
shpc-registry automated BioContainers addition for gatb |
dbgh5, dbginfo, leon, mirror_server, mirror_server_stop, f2py3.10, h5clear, h5format_convert, h5watch, h5fc, 2to3-3.10, idle3.10, pydoc3.10 |
|
GITHUB
|
quay.io/biocontainers/gatk-framework |
shpc-registry automated BioContainers addition for gatk-framework |
gatk-framework, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/gatk |
shpc-registry automated BioContainers addition for gatk |
|
|
GITHUB
|
quay.io/biocontainers/gatk4-spark |
shpc-registry automated BioContainers addition for gatk4-spark |
gatk, x86_64-conda_cos7-linux-gnu-ld, cups-config, ippeveprinter, ipptool, jfr, jaotc, aserver, jdeprscan, jhsdb |
|
GITHUB
|
quay.io/biocontainers/gatk4 |
shpc-registry automated BioContainers addition for gatk4 |
gatk |
|
GITHUB
|
quay.io/biocontainers/gatktool |
shpc-registry automated BioContainers addition for gatktool |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/gawk |
shpc-registry automated BioContainers addition for gawk |
gawk, gawk-5.1.0, awk |
|
GITHUB
|
quay.io/biocontainers/gb-io |
singularity registry hpc automated addition for gb-io |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/gb_taxonomy_tools |
shpc-registry automated BioContainers addition for gb_taxonomy_tools |
gid-taxid, taxonomy-reader, taxonomy2tree, tree2ps |
|
GITHUB
|
quay.io/biocontainers/gbintk |
singularity registry hpc automated addition for gbintk |
combine_cov, gbintk, graphbin, graphbin2, metacoag, prepResult, FragGeneScan, run_FragGeneScan.pl, pbr, igraph, numpy-config, x86_64-conda-linux-gnu-pkg-config, pkg-config, pkg-config.bin, tabulate, numba, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask |
|
GITHUB
|
quay.io/biocontainers/gbkviz |
singularity registry hpc automated addition for gbkviz |
base58, csv-import, delta2vcf, elasticurl, elasticurl_cpp, elastipubsub, gbkviz_webapp, orc-memory, orc-scan, pysemver, streamlit, streamlit.cmd, timezone-dump, watchmedo, jupyter-execute, jupyter-dejavu, send2trash, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run |
|
GITHUB
|
quay.io/biocontainers/gblocks |
shpc-registry automated BioContainers addition for gblocks |
Gblocks |
|
GITHUB
|
quay.io/biocontainers/gbmunge |
shpc-registry automated BioContainers addition for gbmunge |
gbmunge |
|
GITHUB
|
quay.io/biocontainers/gbsx |
shpc-registry automated BioContainers addition for gbsx |
gbsx, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/gc-meox-tms |
singularity registry hpc automated addition for gc-meox-tms |
fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/gcen |
shpc-registry automated BioContainers addition for gcen |
calculate_accuracy, csv_to_tsv, data_filter, data_norm, data_stat, enrich, generate_expr_matrix_from_rsem, generate_expr_matrix_from_stringtie, module_identify, network_build, network_extract, network_merge, network_shuffle, network_stat, rwr, tsv_to_csv, annotate |
|
GITHUB
|
quay.io/biocontainers/gclib |
shpc-registry automated BioContainers addition for gclib |
gtest, threads |
|
GITHUB
|
quay.io/biocontainers/gcluster |
shpc-registry automated BioContainers addition for gcluster |
Gcluster.pl, interested_gene_generation.pl, test.pl, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray, mcxassemble |
|
GITHUB
|
quay.io/biocontainers/gcnvkernel |
shpc-registry automated BioContainers addition for gcnvkernel |
theano-cache, theano-nose, mako-render, compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, f2py3.6, certutil |
|
GITHUB
|
quay.io/biocontainers/gcs-oauth2-boto-plugin |
shpc-registry automated BioContainers addition for gcs-oauth2-boto-plugin |
pyrsa-decrypt-bigfile, pyrsa-encrypt-bigfile, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin |
|
GITHUB
|
quay.io/biocontainers/gcta |
shpc-registry automated BioContainers addition for gcta |
gcta64 |
|
GITHUB
|
quay.io/biocontainers/gctb |
singularity registry hpc automated addition for gctb |
gctb |
|
GITHUB
|
quay.io/biocontainers/gdal |
shpc-registry automated BioContainers addition for gdal |
epsg_tr.py, esri2wkt.py, gcps2vec.py, gcps2wld.py, gdal-config, gdal2tiles.py, gdal2xyz.py, gdal_auth.py, gdal_calc.py, gdal_contour, gdal_edit.py, gdal_fillnodata.py, gdal_grid, gdal_merge.py, gdal_pansharpen.py, gdal_polygonize.py, gdal_proximity.py, gdal_rasterize, gdal_retile.py, gdal_sieve.py, gdal_translate, gdaladdo, gdalbuildvrt, gdalchksum.py, gdalcompare.py, gdaldem, gdalenhance, gdalident.py, gdalimport.py, gdalinfo, gdallocationinfo, gdalmanage, gdalmove.py, gdalserver, gdalsrsinfo, gdaltindex, gdaltransform, gdalwarp, mkgraticule.py, nad2bin, ogrmerge.py, pct2rgb.py, rgb2pct.py, testepsg, pg_standby, conv-template, from-template, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo |
|
GITHUB
|
quay.io/biocontainers/gdc-client |
shpc-registry automated BioContainers addition for gdc-client |
gdc-client, ndg_httpclient, jsonschema, xslt-config, xsltproc, chardetect, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
|
GITHUB
|
quay.io/biocontainers/gdc |
shpc-registry automated BioContainers addition for gdc |
|
|
GITHUB
|
quay.io/biocontainers/gdk-pixbuf |
shpc-registry automated BioContainers addition for gdk-pixbuf |
gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner |
|
GITHUB
|
quay.io/biocontainers/gdmicro |
singularity registry hpc automated addition for gdmicro |
gdmicro, matplotlib, torchrun, ninja, convert-caffe2-to-onnx, convert-onnx-to-caffe2, iptest3, iptest, ipython3, ipython, protoc, pygmentize, f2py3.7, pandoc, fonttools, pyftmerge, pyftsubset, ttx, brotli, 2to3-3.7, idle3.7, pydoc3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, python3.7 |
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GITHUB
|
quay.io/biocontainers/gdsctools |
shpc-registry automated BioContainers addition for gdsctools |
gdsctools_anova, gdsctools_regression, easydev_buildPackage, ibrowse, multigit, browse, runxlrd.py, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel |
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GITHUB
|
quay.io/biocontainers/gecco |
shpc-registry automated BioContainers addition for gecco |
gecco, pyrodigal, cmark, tabulate, pygmentize, tqdm, futurize, pasteurize, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10 |
|
GITHUB
|
quay.io/biocontainers/gecko |
shpc-registry automated BioContainers addition for gecko |
FragHits, allVsAll.sh, combineFrags, comparison.sh, csvExtractBorders, csvFrags2text, dictionary.sh, filterFrags, filterHits, fragStat, frags2align.sh, frags2borders.sh, frags2text, getInfo, hdStat, hits, hitsStat, indexmaker, matrix.mat, reverseComplement, sortHits, sortWords, w2hd, words, wordsStat, workflow.sh |
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GITHUB
|
quay.io/biocontainers/geco2 |
shpc-registry automated BioContainers addition for geco2 |
GeCo2, GeDe2 |
|
GITHUB
|
quay.io/biocontainers/geco3 |
shpc-registry automated BioContainers addition for geco3 |
GeCo3, GeDe3 |
|
GITHUB
|
quay.io/biocontainers/gecode |
shpc-registry automated BioContainers addition for gecode |
all-interval, alpha, bacp, bibd, bin-packing, black-hole, car-sequencing, cartesian-heart, colored-matrix, crew, crossword, crowded-chess, descartes-folium, dominating-queens, domino, donald, efpa, eq20, fzn-gecode, golf, golomb-ruler, graph-color, grocery, hamming, ind-set, job-shop, kakuro, knights, langford-number, magic-sequence, magic-square, minesweeper, money, multi-bin-packing, mzn-gecode, nonogram, open-shop, ortho-latin, partition, pentominoes, perfect-square, photo, qcp, queen-armies, queens, radiotherapy, sat, schurs-lemma, sports-league, steel-mill, steiner, sudoku, sudoku-advanced, tsp, warehouses, word-square |
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GITHUB
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quay.io/biocontainers/gefast |
shpc-registry automated BioContainers addition for gefast |
GeFaST |
|
GITHUB
|
quay.io/biocontainers/gem3-mapper |
shpc-registry automated BioContainers addition for gem3-mapper |
gem-indexer, gem-mapper, gem-retriever |
|
GITHUB
|
quay.io/biocontainers/gembs |
shpc-registry automated BioContainers addition for gembs |
bs_call, dbSNP_idx, gem-indexer, gem-mapper, gem-retriever, gemBS, wigToBigWig, bedToBigBed, get_objgraph, gff2gff.py, undill, pigz, unpigz, my_print_defaults, mysql_config, perror |
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GITHUB
|
quay.io/biocontainers/gemf_favites |
singularity registry hpc automated addition for gemf_favites |
GEMF, GEMF_FAVITES.py, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
|
quay.io/biocontainers/gemini |
shpc-registry automated BioContainers addition for gemini |
bottle.py, dask-mpi, dask-remote, dask-submit, gemini, grabix, ipcluster, ipcontroller, ipengine, iptest2, ipython2, unidecode, cyvcf2, dask-scheduler, dask-ssh, dask-worker, jupyter-kernel, jupyter-kernelspec, jupyter-run, aggregate_scores_in_intervals.py, align_print_template.py |
|
GITHUB
|
quay.io/biocontainers/gemma |
shpc-registry automated BioContainers addition for gemma |
gemma |
|
GITHUB
|
quay.io/biocontainers/gemoma |
shpc-registry automated BioContainers addition for gemoma |
GeMoMa, mmseqs, gawk-5.1.0, CA.pm, awk, cacert.pem, gawk, index-themes, fetch-extras, go.mod, go.sum |
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GITHUB
|
quay.io/biocontainers/gempipe |
singularity registry hpc automated addition for gempipe |
PF00225_full.blocks.txt, PF00225_seed.blocks.txt, add_name_to_gff3.pl, aln2wig, augustify.py, bloomfilterparser.sh, bsmp2info, busco, create_dbs.py, depinfo, download_eggnog_data.py, emapper.py, executeTestCGP.py, extractAnno.py, findRepetitiveProtSeqs.py, fsa2xml, gbf2info, gempipe, generate_plot.py, get_loci_from_gb.pl, gimme_taxa.py, hmm_mapper.py, hmm_server.py, hmm_worker.py, just-top-hits, metaeuk, miniprot, ncbi-genome-download, ngd, pp_simScore, rename_species.pl, run-sepp.sh, run_abundance.py, run_sepp.py, run_tipp.py, run_tipp_tool.py, run_upp.py, seppJsonMerger.jar, split_sequences.py, stringtie2fa.py, systematic-mutations, bamToWig.py, compare_masking.pl, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, merge_masking.pl, Xcalcmem.sh, aa2nonred.pl, cdbfasta, cdbyank, compileSpliceCands, computeFlankingRegion.pl, eval_multi_gtf.pl, filterGenesIn.pl, findGffNamesInFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, gtf2aa.pl, gth2gtf.pl, setStopCodonFreqs.pl, tbl2asn-test, utrrnaseq, hmmc2, hmmerfm-exactmatch, SplicedAlignment.pm, augustus2browser.pl |
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GITHUB
|
quay.io/biocontainers/genbank_to |
singularity registry hpc automated addition for genbank_to |
genbank_to, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py, bed_count_overlapping.py, bed_coverage.py, bed_coverage_by_interval.py, bed_diff_basewise_summary.py, bed_extend_to.py, bed_intersect.py, bed_intersect_basewise.py, bed_merge_overlapping.py, bed_rand_intersect.py, bed_subtract_basewise.py, bnMapper.py, div_snp_table_chr.py, find_in_sorted_file.py, gene_fourfold_sites.py, get_scores_in_intervals.py |
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GITHUB
|
quay.io/biocontainers/genblastg |
shpc-registry automated BioContainers addition for genblastg |
genblastG, test_pcre, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, seedtop, blast_formatter, blastdb_aliastool, blastdbcheck, blastdbcmd |
|
GITHUB
|
quay.io/biocontainers/genclust |
shpc-registry automated BioContainers addition for genclust |
genclust |
|
GITHUB
|
quay.io/biocontainers/gencore |
shpc-registry automated BioContainers addition for gencore |
gencore, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/gencove |
singularity registry hpc automated addition for gencove |
gencove, jp.py, py.test, pytest, normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/gene-trajectory-python |
singularity registry hpc automated addition for gene-trajectory-python |
qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, igraph, h5tools_test_utils, scanpy, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, h5delete |
|
GITHUB
|
quay.io/biocontainers/genefuse |
shpc-registry automated BioContainers addition for genefuse |
genefuse |
|
GITHUB
|
quay.io/biocontainers/geneimpacts |
shpc-registry automated BioContainers addition for geneimpacts |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/genenotebook |
shpc-registry automated BioContainers addition for genenotebook |
genenotebook, install_compass, mongo, mongod, mongos, node, npm, npx, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides |
|
GITHUB
|
quay.io/biocontainers/genepender |
shpc-registry automated BioContainers addition for genepender |
genepender, qdoc3, qmlviewer, qt3to4, qtconfig, qttracereplay, qhelpconverter, qdbus, qdbuscpp2xml, qdbusviewer, qdbusxml2cpp, xmlpatterns, xmlpatternsvalidator, assistant, designer, lconvert |
|
GITHUB
|
quay.io/biocontainers/genepop |
shpc-registry automated BioContainers addition for genepop |
Genepop |
|
GITHUB
|
quay.io/biocontainers/generax |
shpc-registry automated BioContainers addition for generax |
generax, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun |
|
GITHUB
|
quay.io/biocontainers/genericrepeatfinder |
shpc-registry automated BioContainers addition for genericrepeatfinder |
grf-alignment, grf-alignment2, grf-dbn, grf-filter, grf-intersperse, grf-main, grf-mite-cluster, grf-nest, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div, cd-hit-div.pl |
|
GITHUB
|
quay.io/biocontainers/genesplicer |
shpc-registry automated BioContainers addition for genesplicer |
genesplicer |
|
GITHUB
|
quay.io/biocontainers/genewalk |
shpc-registry automated BioContainers addition for genewalk |
compare_gos.py, fetch_associations.py, find_enrichment.py, genewalk, go_plot.py, map_to_slim.py, ncbi_gene_results_to_python.py, plot_go_term.py, prt_terms.py, wr_hier.py, wr_sections.py, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier |
|
GITHUB
|
quay.io/biocontainers/genie |
shpc-registry automated BioContainers addition for genie |
bolt, genie |
|
GITHUB
|
quay.io/biocontainers/genin2 |
singularity registry hpc automated addition for genin2 |
genin2, idle3.13, pydoc3.13, python3.13, python3.13-config, numpy-config, normalizer |
|
GITHUB
|
quay.io/biocontainers/genion |
singularity registry hpc automated addition for genion |
genion |
|
GITHUB
|
quay.io/biocontainers/genmap |
shpc-registry automated BioContainers addition for genmap |
genmap |
|
GITHUB
|
quay.io/biocontainers/genmod |
shpc-registry automated BioContainers addition for genmod |
genmod, ped_parser, py.test, pytest, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/geno2phenotb |
singularity registry hpc automated addition for geno2phenotb |
GenomeAnalysisTK, MTBseq, gatk3, geno2phenotb, picard, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd, schemagen, servertool, tnameserv, wsgen, wsimport, xjc, qualfa2fq.pl, xa2multi.pl, bwa, f2py3.7, jfr, 2to3-3.7 |
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GITHUB
|
quay.io/biocontainers/genoboo |
singularity registry hpc automated addition for genoboo |
genoboo, meteor, mongo, mongod, mongos, node, npm, npx, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl, sort-table, spdi2tbl, split-at-intron, tbl2xml, transmute.Linux, xml2fsa |
|
GITHUB
|
quay.io/biocontainers/genodsp |
singularity registry hpc automated addition for genodsp |
genodsp |
|
GITHUB
|
quay.io/biocontainers/genoflu |
singularity registry hpc automated addition for genoflu |
genoflu.py, test_pcre, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs |
|
GITHUB
|
quay.io/biocontainers/genologics |
shpc-registry automated BioContainers addition for genologics |
chardetect, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/genomad |
singularity registry hpc automated addition for genomad |
aria2c, flatc, genomad, h5delete, import_pb_to_tensorboard, markdown-it, prodigal-gv, rich-click, aec, mmseqs, xgboost, estimator_ckpt_converter, aragorn, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2, gawk-5.1.0, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, awk, gawk, numba, pycc, pyrsa-decrypt |
|
GITHUB
|
quay.io/biocontainers/genome2tree |
singularity registry hpc automated addition for genome2tree |
Genome2Tree.py, clipkit, convert_orthofinder_tree_ids.py, fastme, gawk-5.3.1, make_ultrametric.py, orthofinder, phykit, pk_al, pk_alignment_length, pk_alignment_length_no_gaps, pk_alignment_recoding, pk_aln_len, pk_aln_len_no_gaps, pk_aln_recoding, pk_alng, pk_bipartition_support_stats, pk_blm, pk_branch_length_multiplier, pk_bss, pk_cb, pk_cbps, pk_cc, pk_clan_check, pk_collapse, pk_collapse_branches, pk_column_score, pk_comp_bias_per_site, pk_compositional_bias_per_site, pk_covarying_evolutionary_rates, pk_cover, pk_create_concat, pk_create_concatenation_matrix, pk_cs, pk_degree_of_violation_of_a_molecular_clock, pk_dvmc, pk_erps, pk_evo_rate, pk_evo_rate_per_site, pk_evolutionary_rate, pk_evolutionary_rate_per_site, pk_faidx, pk_gc, pk_gc_content, pk_ge, pk_get_entry, pk_hidden_paralogy_check, pk_ibs, pk_il, pk_internal_branch_stats, pk_internode_labeler, pk_is_monophyletic, pk_labels, pk_last_common_ancestor_subtree, pk_lb_score, pk_lbs, pk_lca_subtree, pk_long_branch_score, pk_monophyly_check, pk_nearest_neighbor_interchange, pk_nni, pk_p2n, pk_pairwise_id, pk_pairwise_identity, pk_pal2nal, pk_parsimony_informative_sites, pk_patristic_distances, pk_pd, pk_pi, pk_pis, pk_polyt, pk_polyt_test, pk_polytomy_test, pk_print, pk_print_tree, pk_prune, pk_prune_tree, pk_pt, pk_ptt, pk_rcv, pk_rcvt, pk_recode, pk_rel_comp_var, pk_rel_comp_var_taxon, pk_relative_composition_variability, pk_relative_composition_variability_taxon, pk_rename_fasta, pk_rename_fasta_entries, pk_rename_tips, pk_rename_tree, pk_rename_tree_tips, pk_rf, pk_rf_dist, pk_rf_distance, pk_robinson_foulds_distance, pk_root, pk_root_tree, pk_rt, pk_sat, pk_saturation, pk_sop, pk_sops, pk_spurious_seq, pk_spurious_sequence, pk_ss, pk_sum_of_pairs_score, pk_t2t, pk_t2t_dist, pk_t2t_nd, pk_t2t_node_dist, pk_tbs, pk_terminal_branch_stats, pk_thread_dna, pk_tip_labels, pk_tip_to_tip_distance, pk_tip_to_tip_node_distance, pk_tl, pk_tness, pk_tor, pk_total_tree_length, pk_toverr, pk_tree_labels, pk_tree_len, pk_treeness, pk_treeness_over_rcv, pk_variable_sites, pk_vs, primary_transcript.py, rcl, rcl-dot-resmap.pl, rcl-qc, rcl-qm.R, rcl-relevel.pl, rcl-select.pl, rcldo.pl, raxml-ng, raxml-ng-mpi, iqtree2, bsmp2info, fsa2xml, gbf2info, just-top-hits, mclblastline, mcxdeblast, systematic-mutations, clm, clxdo, mcl, mcx, mcxarray, mcxdump, mcxi, mcxload, mcxmap, mcxsubs, aria2c, iqtree, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS |
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GITHUB
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quay.io/biocontainers/genome_updater |
shpc-registry automated BioContainers addition for genome_updater |
genome_updater.sh, bc, dc, tar, gawk-5.1.0, basenc, b2sum, awk, base32, base64, basename |
|
GITHUB
|
quay.io/biocontainers/genomebaser |
shpc-registry automated BioContainers addition for genomebaser |
GenomeBaser, sample, easy_install-2.7, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5 |
|
GITHUB
|
quay.io/biocontainers/genomeconstellation |
shpc-registry automated BioContainers addition for genomeconstellation |
jgi_gc |
|
GITHUB
|
quay.io/biocontainers/genomedata |
shpc-registry automated BioContainers addition for genomedata |
bigWigToBedGraph, filter, genomedata-close-data, genomedata-erase-data, genomedata-hardmask, genomedata-histogram, genomedata-info, genomedata-load, genomedata-load-assembly, genomedata-load-data, genomedata-load-seq, genomedata-open-data, genomedata-query, genomedata-report, hidehead, innerjoin, intersect, mean, nohead, run_genomedata_tests.py, test_genomedata.py, pt2to3, ptdump, ptrepack, pttree, my_print_defaults, mysql_config, perror, mirror_server, mirror_server_stop, shiftBed |
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GITHUB
|
quay.io/biocontainers/genomelake |
shpc-registry automated BioContainers addition for genomelake |
dask-remote, dask-submit, dask-scheduler, dask-ssh, dask-worker, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py |
|
GITHUB
|
quay.io/biocontainers/genomepy |
shpc-registry automated BioContainers addition for genomepy |
|
|
GITHUB
|
quay.io/biocontainers/genomescope2 |
shpc-registry automated BioContainers addition for genomescope2 |
genomescope2, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/genomestrip |
shpc-registry automated BioContainers addition for genomestrip |
genomestrip, fasta-sanitize.pl, plot-ampliconstats, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod |
|
GITHUB
|
quay.io/biocontainers/genometester4 |
shpc-registry automated BioContainers addition for genometester4 |
glistcompare, glistmaker, glistquery, gmer_caller, gmer_counter |
|
GITHUB
|
quay.io/biocontainers/genomethreader |
shpc-registry automated BioContainers addition for genomethreader |
gth, gthclean.sh, gthcleanrec.sh, gthconsensus, gthfilestat, gthgetseq, gthsplit, gthsplit2dim.sh |
|
GITHUB
|
quay.io/biocontainers/genometools-genometools |
shpc-registry automated BioContainers addition for genometools-genometools |
genometools-config, gt, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/genometools |
shpc-registry automated BioContainers addition for genometools |
|
|
GITHUB
|
quay.io/biocontainers/genometreetk |
shpc-registry automated BioContainers addition for genometreetk |
_ssu-align, _ssu-build, _ssu-draw, _ssu-mask, _ssu-merge, _ssu-prep, abi-dump.2.10.8, align-cache.2.10.8, align-info.2.10.8, bam-load.2.10.8, cache-mgr.2.10.8, cg-load.2.10.8, fasterq-dump-orig.2.10.8, fasterq-dump.2.10.8, fastq-dump-orig.2.10.8, fastq-dump.2.10.8, genometreetk, illumina-dump.2.10.8, kar.2.10.8, kdbmeta.2.10.8, kget.2.10.8, latf-load.2.10.8, md5cp.2.10.8, mothur, prefetch-orig.2.10.8, prefetch.2.10.8, rcexplain.2.10.8, read-filter-redact.2.10.8, sam-dump-orig.2.10.8, sam-dump.2.10.8, sff-dump.2.10.8, sra-pileup-orig.2.10.8, sra-pileup.2.10.8, sra-sort-cg.2.10.8, sra-sort.2.10.8, sra-stat.2.10.8, srapath-orig.2.10.8, srapath.2.10.8, sratools.2.10.8, ssu-align, ssu-build, ssu-cmalign, ssu-cmbuild, ssu-cmcalibrate, ssu-cmemit, ssu-cmfetch, ssu-cmscore, ssu-cmsearch, ssu-cmstat, ssu-draw, ssu-esl-afetch, ssu-esl-alimanip, ssu-esl-alimap, ssu-esl-alimask, ssu-esl-alimerge, ssu-esl-alistat, ssu-esl-cluster, ssu-esl-compalign, ssu-esl-compstruct, ssu-esl-histplot, ssu-esl-mask, ssu-esl-reformat, ssu-esl-selectn, ssu-esl-seqrange, ssu-esl-seqstat, ssu-esl-sfetch, ssu-esl-shuffle, ssu-esl-ssdraw, ssu-esl-weight, ssu-mask, ssu-merge, ssu-prep, test-sra.2.10.8, uchime, vdb-config.2.10.8, vdb-copy.2.10.8, vdb-decrypt.2.10.8, vdb-diff.2.10.8, vdb-dump-orig.2.10.8, vdb-dump.2.10.8, vdb-encrypt.2.10.8, vdb-lock.2.10.8, vdb-passwd.2.10.8, vdb-unlock.2.10.8, vdb-validate.2.10.8, align-cache.2, md5cp.2, read-filter-redact.2, sra-sort-cg.2, vdb-diff.2, align-cache, fasterq-dump-orig, fastq-dump-orig, md5cp, prefetch-orig |
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GITHUB
|
quay.io/biocontainers/genomic_address_service |
singularity registry hpc automated addition for genomic_address_service |
cmtime, cpuinfo, gas, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, mckey, protoc-24.3.0, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, ucmatose, udaddy, udpong, h5fuse.sh, io_demo, ucx_info, ucx_perftest, ucx_read_profile, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, h5delete, gflags_completions.sh, pt2to3 |
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GITHUB
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quay.io/biocontainers/genomic_regions |
shpc-registry automated BioContainers addition for genomic_regions |
convert-regions, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, futurize, pasteurize |
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GITHUB
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quay.io/biocontainers/genomicassertions |
shpc-registry automated BioContainers addition for genomicassertions |
vcf_sample_filter.py, vcf_filter.py, vcf_melt, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config |
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GITHUB
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quay.io/biocontainers/genomicconsensus |
shpc-registry automated BioContainers addition for genomicconsensus |
ccache-swig, dataset.py, gffToBed, gffToVcf, pbservice, plurality, quiver, summarizeConsensus, swig, variantCaller, unit2, avro, cygdb, cython, cythonize, jsonschema, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl |
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GITHUB
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quay.io/biocontainers/genomics-data-index |
singularity registry hpc automated addition for genomics-data-index |
attr, balsam, dumpsexp, gdi, getfattr, gpg-error, gpg-error-config, gpgrt-config, hmac256, ipython3.9, iqtree2, jackd, lame, libgcrypt-config, lprodump, lrelease-pro, lupdate-pro, meshdebug, mpg123, mpg123-id3dump, mpg123-strip, mpicalc, orc-bugreport, orcc, out123, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, pulseaudio, pyppeteer-install, qmlformat, qmltime, qmltyperegistrar, qpaeq, seqrepo, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, sourmash, sqlformat, tracegen, yat2m, yoyo, yoyo-migrate, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, stone, plac_runner.py, screed, yte, iqtree, snpEff, docutils, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin |
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GITHUB
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quay.io/biocontainers/genonets |
shpc-registry automated BioContainers addition for genonets |
igraph, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis, ndmetis, glpsol, tqdm, f2py3.9 |
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GITHUB
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quay.io/biocontainers/genotyphi |
shpc-registry automated BioContainers addition for genotyphi |
genotyphi, genotyphi.py, parse_typhi_mykrobe.py, gff2gff.py, guess-ploidy.py, plot-roh.py, run-roh.pl, f2py2, f2py2.7, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl |
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GITHUB
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quay.io/biocontainers/genrich |
shpc-registry automated BioContainers addition for genrich |
Genrich |
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GITHUB
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quay.io/biocontainers/gentle |
singularity registry hpc automated addition for gentle |
GENtle, gtk-builder-tool, gtk-encode-symbolic-svg, gtk-launch, gtk-query-immodules-3.0, gtk-query-settings, ibd2sdi, innochecksum, myisam_ftdump, myisamchk, myisamlog, myisampack, mysql, mysql.server, mysql_config_editor, mysql_migrate_keyring, mysql_secure_installation, mysql_ssl_rsa_setup, mysql_tzinfo_to_sql, mysql_upgrade, mysqladmin, mysqlbinlog, mysqlcheck, mysqld, mysqld_multi, mysqld_safe, mysqldump, mysqldumpslow, mysqlimport, mysqlpump, mysqlshow, mysqlslap, protoc-23.4.0, wayland-scanner, wx-config, wxrc, wxrc-3.2, zlib_decompress, xkbcli, my_print_defaults, mysql_config, perror, hb-info, cups-config, ippeveprinter, ipptool, rsvg-convert, tjbench, gtk-update-icon-cache, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, protoc, gst-device-monitor-1.0, gst-discoverer-1.0, gst-play-1.0, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, gst-inspect-1.0 |
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GITHUB
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quay.io/biocontainers/genview |
singularity registry hpc automated addition for genview |
genview-makedb, genview-visualize, time, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div, cd-hit-div.pl, cd-hit-est-2d, cd-hit-para.pl, clstr2tree.pl, clstr2txt.pl, clstr2xml.pl, clstr_cut.pl, clstr_merge.pl, clstr_merge_noorder.pl, clstr_quality_eval.pl, clstr_quality_eval_by_link.pl, clstr_reduce.pl, clstr_renumber.pl, clstr_rep.pl, clstr_reps_faa_rev.pl, clstr_rev.pl |
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GITHUB
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quay.io/biocontainers/geodl |
shpc-registry automated BioContainers addition for geodl |
geoDL, xslt-config, xsltproc, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
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quay.io/biocontainers/geofetch |
singularity registry hpc automated addition for geofetch |
f2py3.11, geofetch, markdown-it, sraconvert, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, coloredlogs, humanfriendly, py.test, pytest, jsonschema, pygmentize, normalizer, python3.1 |
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GITHUB
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quay.io/biocontainers/geosketch |
shpc-registry automated BioContainers addition for geosketch |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/gepard |
shpc-registry automated BioContainers addition for gepard |
gepard, gepardcmd, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/gerp |
shpc-registry automated BioContainers addition for gerp |
gerpcol, gerpelem |
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GITHUB
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quay.io/biocontainers/get_fasta_info |
singularity registry hpc automated addition for get_fasta_info |
get_fasta_info, get_fastq_info |
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GITHUB
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quay.io/biocontainers/get_homologues |
singularity registry hpc automated addition for get_homologues |
CHANGES.txt, COGcognitor, COGlse, COGmakehash, COGreadblast, COGtriangles, DrawGram.jar, DrawTree.jar, LICENSE.txt, add_pancore_matrices.pl, add_pangenome_matrices.pl, annotate_cluster.pl, check_BDBHs.pl, clique, compare_clusters.pl, consense, contml, contrast, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, dollop, dolmove, dolpenny, download_genomes_ncbi.pl, drawgram, drawgram_gui, drawtree, drawtree_gui, fitch, gendist, get_homologues-est.pl, get_homologues.pl, hcluster_pangenome_matrix.sh, install.pl, kitsch, make_nr_pangenome_matrix.pl, mix, move, neighbor, pars, parse_pangenome_matrix.pl, penny, pfam_enrich.pl, phylip, plot_matrix_heatmap.sh, plot_pancore_matrix.pl, proml, promlk, protdist, protpars, restdist, restml, retree, seqboot, transcripts2cds.pl, transcripts2cdsCPP.pl, treedist, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray, mcxassemble, mcxdeblast, mcxdump, mcxi, mcxload, mcxmap, mcxrand, mcxsubs, jpackage, diamond, factor, cups-config, ippeveprinter, ipptool, bdf2gdfont.pl, edirect.py |
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GITHUB
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quay.io/biocontainers/get_mnv |
singularity registry hpc automated addition for get_mnv |
get_mnv, annot-tsv, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/get_orfs |
singularity registry hpc automated addition for get_orfs |
get_orfs |
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GITHUB
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quay.io/biocontainers/getorganelle |
shpc-registry automated BioContainers addition for getorganelle |
check_annotations.py, cook_coding_for_blast.py, disentangle_organelle_assembly.py, evaluate_assembly_using_mapping.py, fastg_to_gfa.py, get_organelle_config.py, get_organelle_from_assembly.py, get_organelle_from_reads.py, get_pair_reads.py, gfa_to_fasta.py, gfa_to_fastg.py, isympy, join_spades_fastg_by_blast.py, make_batch_for_get_organelle.py, make_batch_for_iteratively_mapping_assembling.py, plastome_arch_info.py, reconstruct_graph_from_fasta.py, rm_low_coverage_duplicated_contigs.py, round_statistics.py, slim_graph.py, summary_get_organelle_output.py, cds-mapping-stats, cds-subgraphs, mag-improve, spades-convert-bin-to-fasta, spades-gsimplifier, spades-kmer-estimating, spades-read-filter, spaligner, spades-bwa, spades-core |
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GITHUB
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quay.io/biocontainers/gevent |
shpc-registry automated BioContainers addition for gevent |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/gfa1 |
singularity registry hpc automated addition for gfa1 |
falcon2gfa, fastg2gfa, gfaview, mag2gfa, supernova2gfa |
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GITHUB
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quay.io/biocontainers/gfaffix |
shpc-registry automated BioContainers addition for gfaffix |
gfaffix |
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GITHUB
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quay.io/biocontainers/gfainject |
singularity registry hpc automated addition for gfainject |
gfainject |
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GITHUB
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quay.io/biocontainers/gfapy |
shpc-registry automated BioContainers addition for gfapy |
gfapy-convert, gfapy-mergelinear, gfapy-renumber, gfapy-validate, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/gfastats |
shpc-registry automated BioContainers addition for gfastats |
gfastats |
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GITHUB
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quay.io/biocontainers/gfatools |
shpc-registry automated BioContainers addition for gfatools |
gfatools, paf2gfa |
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GITHUB
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quay.io/biocontainers/gff2bed |
singularity registry hpc automated addition for gff2bed |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
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quay.io/biocontainers/gff3sort |
shpc-registry automated BioContainers addition for gff3sort |
check-disorder.pl, gff3sort.pl, findrule, perl5.26.2, podselect |
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GITHUB
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quay.io/biocontainers/gff3toddbj |
shpc-registry automated BioContainers addition for gff3toddbj |
compare-ddbj, genbank-to-ddbj, gff3-to-ddbj, list-products, normalize-entry-names, split-fasta, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
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GITHUB
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quay.io/biocontainers/gff3toembl |
shpc-registry automated BioContainers addition for gff3toembl |
genometools-config, gff3_to_embl, gt, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/gffcompare |
shpc-registry automated BioContainers addition for gffcompare |
gffcompare, gtest, threads |
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GITHUB
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quay.io/biocontainers/gfflu |
singularity registry hpc automated addition for gfflu |
blastn_vdb, gfflu, miniprot, tblastn_vdb, markdown-it, uuid, uuid-config, test_pcre, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py, bed_count_overlapping.py, bed_coverage.py, bed_coverage_by_interval.py, bed_diff_basewise_summary.py, bed_extend_to.py, bed_intersect.py, bed_intersect_basewise.py, bed_merge_overlapping.py, bed_rand_intersect.py, bed_subtract_basewise.py, bnMapper.py |
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GITHUB
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quay.io/biocontainers/gffmunger |
shpc-registry automated BioContainers addition for gffmunger |
genometools-config, gffmunger, gt, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, faidx, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7 |
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GITHUB
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quay.io/biocontainers/gffpandas |
singularity registry hpc automated addition for gffpandas |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/gffread |
shpc-registry automated BioContainers addition for gffread |
gffread |
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GITHUB
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quay.io/biocontainers/gfftk |
singularity registry hpc automated addition for gfftk |
gfftk, table2asn, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, natsort |
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GITHUB
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quay.io/biocontainers/gffutils |
shpc-registry automated BioContainers addition for gffutils |
gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, faidx, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config |
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GITHUB
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quay.io/biocontainers/gfinisher |
shpc-registry automated BioContainers addition for gfinisher |
gfinisher, easy_install-2.7, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj |
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GITHUB
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quay.io/biocontainers/gfmix |
singularity registry hpc automated addition for gfmix |
alpha_est_mix_rt, gfmix, rert, treecns |
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GITHUB
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quay.io/biocontainers/gfold |
shpc-registry automated BioContainers addition for gfold |
gfold |
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GITHUB
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quay.io/biocontainers/gfviewer |
singularity registry hpc automated addition for gfviewer |
gfviewer, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, chardetect, fonttools, pyftmerge, pyftsubset, ttx, brotli, tjbench, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, opj_compress, opj_decompress, opj_dump |
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GITHUB
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quay.io/biocontainers/ggcaller |
shpc-registry automated BioContainers addition for ggcaller |
Bifrost, ggcaller, rapidnj, torchrun, snp-sites, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, gffutils-cli, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit |
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GITHUB
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quay.io/biocontainers/ggcat |
singularity registry hpc automated addition for ggcat |
ggcat |
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GITHUB
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quay.io/biocontainers/ggd |
shpc-registry automated BioContainers addition for ggd |
bsdcat, bsdcpio, bsdtar, check-sort-order, conda-build, conda-convert, conda-debug, conda-develop, conda-index, conda-inspect, conda-metapackage, conda-render, conda-skeleton, ggd, gsort, patchelf, pkginfo, rg, conda-env, cph, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, cyvcf2 |
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GITHUB
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quay.io/biocontainers/gget |
singularity registry hpc automated addition for gget |
attr, balsam, esdcompat, getfattr, gget, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, jupyter-console, jupyter-qtconsole, lprodump, lrelease-pro, lupdate-pro, meshdebug, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, qtpy, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, jupyter-execute, flac, jupyter-dejavu, metaflac, send2trash, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, xml2-config.bak, pandoc-server, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run |
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GITHUB
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quay.io/biocontainers/ggplot |
shpc-registry automated BioContainers addition for ggplot |
easy_install-3.6, qhelpconverter, pylupdate5, pyrcc5, pyuic5, sip, qdoc, gst-device-monitor-1.0, gst-discoverer-1.0, gst-play-1.0 |
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GITHUB
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quay.io/biocontainers/ghm |
shpc-registry automated BioContainers addition for ghm |
ghm |
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GITHUB
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quay.io/biocontainers/ghmm |
shpc-registry automated BioContainers addition for ghmm |
ccache-swig, ghmm-config, probdist, scluster, smix_hmm, swig, cluster, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/ghost-tree |
shpc-registry automated BioContainers addition for ghost-tree |
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GITHUB
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quay.io/biocontainers/ghostscript |
shpc-registry automated BioContainers addition for ghostscript |
font2c, wftopfa, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500, gslj, gslp, gsnd, lprsetup.sh |
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GITHUB
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10679 container modules.