8820 container modules.
github container description aliases
GITHUB adminer Database management in a single PHP file.
GITHUB bids/aa BIDS App containing an instance of the Automatic Analysis. (https://github.com/BIDS-Apps/aa)
GITHUB bids/baracus Brain-Age Regression Analysis and Computation Utility Software (https://github.com/BIDS-Apps/baracus)
GITHUB bids/brainiak-srm Shared Response Model (SRM) from the Brain Imaging Analysis Kit (BrainIAK) (https://github.com/BIDS-Apps/brainiak-srm)
GITHUB bids/brainsautoworkup A BIDS App for running BRAINSAutoWorkup (https://github.com/BIDS-Apps/BRAINSAutoworkup)
GITHUB bids/broccoli BROCCOLI is a software for analysis of fMRI (functional magnetic resonance imaging) data and is written in OpenCL (Open Computing Language). (https://github.com/BIDS-Apps/BROCCOLI)
GITHUB bids/freesurfer Surface reconstruction using Freesurfer
GITHUB bids/hcppipelines BIDS-ified HPC Piplines to process MRI data for the Human Connectome Project (https://github.com/BIDS-Apps/HCPPipelines)
GITHUB bids/matlab-compiler-runtime Base image with Matlab compiler runtime (https://github.com/BIDS-Apps/matlab-compiler-runtime)
GITHUB bids/mrtrix3_connectome Generation and subsequent group analysis of structural connectomes generated from diffusion MRI data (via the MRtrix3 software package). https://github.com/BIDS-Apps/MRtrix3_connectome
GITHUB bids/niak The neuroimaging analysis kit. Pipeline for preprocessing of fMRI and structural MRI scans http://niak.simexp-lab.org/ (https://github.com/BIDS-Apps/niak)
GITHUB bids/pymvpa Take fMRI data and generates ROI based MultiVariate Pattern Analysis (MVPA) outputs (https://github.com/BIDS-Apps/PyMVPA)
GITHUB bids/rshrf Resting state HRF estimation and deconvolution (https://github.com/BIDS-Apps/rsHRF) rsHRF
GITHUB bids/spm The implementation of the theoretical concepts of Statistical Parametric Mapping in a complete analysis package. spm12
GITHUB bids/tracula Implements Freesurfer's TRACULA (TRActs Constrained by UnderLying Anatomy) tool for cross-sectional as well as longitudinal (multi session) input data (https://github.com/BIDS-Apps/tracula)
GITHUB bids/validator A validator for BIDS (Brain Imaging Data Structure) datasets. bids-validator
GITHUB consul Consul is a datacenter runtime that provides service discovery, configuration, and orchestration. consul
GITHUB couchdb CouchDB is a database that uses JSON for documents, an HTTP API, & JavaScript/declarative indexing. couchdb, couchdb.cmd, couchjs, remsh
GITHUB elasticsearch Elasticsearch is a powerful open source search and analytics engine that makes data easy to explore. elasticsearch, elasticsearch-certgen, elasticsearch-certutil, elasticsearch-cli, elasticsearch-croneval, elasticsearch-env, elasticsearch-env-from-file, elasticsearch-keystore, elasticsearch-migrate, elasticsearch-node, elasticsearch-plugin, elasticsearch-saml-metadata, elasticsearch-setup-passwords, elasticsearch-shard, elasticsearch-sql-cli, elasticsearch-sql-cli-7.12.0.jar, elasticsearch-syskeygen, elasticsearch-users
GITHUB ghcr.io/autamus/abi-dumper ABI Dumper is a tool for dumping ABI information of an ELF object containing DWARF debug info. abi-dumper
GITHUB ghcr.io/autamus/abyss ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. abyss-align, abyss-bloom, abyss-bloom-dbg, abyss-bloom-dist.mk, abyss-bowtie, abyss-bowtie2, abyss-bwa, abyss-bwamem, abyss-bwasw, abyss-db-csv, abyss-db-txt, abyss-dida, abyss-fac, abyss-fatoagp, abyss-filtergraph, abyss-fixmate, abyss-fixmate-ssq, abyss-gapfill, abyss-gc, abyss-index, abyss-junction, abyss-kaligner, abyss-layout, abyss-longseqdist, abyss-map, abyss-map-ssq, abyss-mergepairs, abyss-overlap, abyss-paired-dbg, abyss-paired-dbg-mpi, abyss-pe, abyss-samtoafg, abyss-scaffold, abyss-sealer, abyss-stack-size, abyss-tabtomd, abyss-todot, abyss-tofastq
GITHUB ghcr.io/autamus/accumulo Apache Accumulo is a sorted, distributed key/value store that provides robust, scalable data storage and retrieval.
GITHUB ghcr.io/autamus/addrwatch addrwatch is a similar software to arpwatch. It main purpose is to monitor network and log ethernet/ip pairings. addrwatch, addrwatch_stdout, addrwatch_syslog
GITHUB ghcr.io/autamus/adios The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation. adios_config, adios_lint, adios_list_methods, adios_list_methods_nompi, adios_list_methods_readonly, adios_list_methods_readonly_nompi
GITHUB ghcr.io/autamus/adios2 The Adaptable Input Output System version 2, developed in the Exascale Computing Program adios2-config, adios2_deactivate_bp, adios2_iotest, adios2_reorganize, adios2_reorganize_mpi
GITHUB ghcr.io/autamus/admixtools ADMIXTOOLS is a collection of programs which use genetic data to infer how populations are related to one another. convertf, dowtjack, expfit.sh, gcount, grabpars, gsl-config, gsl-histogram, gsl-randist, jackdiff, kimf, mergeit, mkpretty, qp3Pop, qp4diff, qpAdm, qpBound, qpDpart, qpDstat, qpF4ratio, qpGraph, qpWave, qpdslow, qpff3base, qpfmv, qpfstats, qpreroot, rexpfit.r, rolloff, rolloffp, simpjack2, twtable, wtjack.pl
GITHUB ghcr.io/autamus/advancecomp AdvanceCOMP is a set of cross-platform command line data (re-)compression tools. advdef, advmng, advpng, advzip
GITHUB ghcr.io/autamus/alan A simple in-terminal alignment viewer. alan
GITHUB ghcr.io/autamus/alps Algorithms and Libraries for Physics Simulations. alpspython
GITHUB ghcr.io/autamus/amrex AMReX is a publicly available software framework designed for building massively parallel block- structured adaptive mesh refinement (AMR) applications.
GITHUB ghcr.io/autamus/angsd ANGSD is a software for analyzing next generation sequencing data. angsd
GITHUB ghcr.io/autamus/arborx ArborX is a performance-portable library for geometric search
GITHUB ghcr.io/autamus/argobots A lightweight runtime system that supports integrated computation and data movement with massive concurrency.
GITHUB ghcr.io/autamus/aria2 aria2 is a lightweight multi-protocol & multi-source command-line download utility. aria2c
GITHUB ghcr.io/autamus/ascent An open source many-core capable lightweight in situ visualization and analysis infrastructure for multi-physics HPC simulations.
GITHUB ghcr.io/autamus/astral ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees. astral
GITHUB ghcr.io/autamus/bart BART: Toolbox for Computational Magnetic Resonance Imaging bart, bartview
GITHUB ghcr.io/autamus/bbmap A suite of fast, multithreaded bioinformatics tools designed for analysis of DNA and RNA sequence data.
GITHUB ghcr.io/autamus/bcftools BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. bcftools
GITHUB ghcr.io/autamus/beast2 BEAST 2 is a cross-platform program for Bayesian phylogenetic analysis of molecular sequences. beast, beasti, beauti, densitree, treeannotator
GITHUB ghcr.io/autamus/bedops BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. bam2bed, bam2bed_gnuParallel, bam2bed_sge, bam2bed_slurm, bam2starch, bam2starch_gnuParallel, bam2starch_sge, bam2starch_slurm, bedextract, bedmap, bedops, closest-features, convert2bed, gff2bed, gff2starch, gtf2bed, gtf2starch, gvf2bed, gvf2starch, psl2bed, psl2starch, rmsk2bed, rmsk2starch, sam2bed, sam2starch, sort-bed, starch, starch-diff, starchcat, starchcluster_gnuParallel, starchcluster_sge, starchcluster_slurm, starchstrip, unstarch, update-sort-bed-migrate-candidates, update-sort-bed-slurm, update-sort-bed-starch-slurm, vcf2bed, vcf2starch, wig2bed, wig2starch
GITHUB ghcr.io/autamus/bedtools2 The swiss army knife for genome arithmetic annotateBed, bamToBed, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, fastaFromBed, flankBed, genomeCoverageBed, intersectBed, linksBed, mapBed, maskFastaFromBed, mergeBed, multiIntersectBed, nucBed, pairToBed, randomBed, shiftBed, shuffleBed, slopBed, sortBed, subtractBed, unionBedGraphs, windowBed
GITHUB ghcr.io/autamus/bismark Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step. bismark, bismark_genome_preparation, bismark_methylation_extractor, bismark2bedGraph, bismark2report, bismark2summary
GITHUB ghcr.io/autamus/bolt BOLT targets a high-performing OpenMP implementation, especially specialized for fine-grain parallelism.
GITHUB ghcr.io/autamus/boost The Boost project provides free peer-reviewed portable C++ source libraries.
GITHUB ghcr.io/autamus/bowtie2 Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s
GITHUB ghcr.io/autamus/bracken Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
GITHUB ghcr.io/autamus/bwa BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. bwa
GITHUB ghcr.io/autamus/cabana The Exascale Co-Design Center for Particle Applications Toolkit
GITHUB ghcr.io/autamus/caliper Caliper is a program instrumentation and performance measurement framework. cali-query, cali-stat
GITHUB ghcr.io/autamus/cantera Cantera is an open-source collection of object-oriented software tools for problems involving chemical kinetics, thermodynamics, and transport processes.
GITHUB ghcr.io/autamus/cctools The Cooperative Computing Tools (CCTools) are a collection of programs that enable large scale distributed computing on systems such as clusters, clouds, and grids. c_rehash, captoinfo, catalog_query, catalog_server, catalog_update, ccache-swig, cctools_gpu_autodetect, chirp, chirp_audit_cluster, chirp_benchmark, chirp_distribute, chirp_fuse, chirp_get, chirp_put, chirp_server, chirp_server_hdfs, chirp_status, chirp_stream_files, chroot_package_run, clear, condor_submit_makeflow, condor_submit_workers, confuga_adm, corelist, cpan, cpanm
GITHUB ghcr.io/autamus/cdo CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data. cdo
GITHUB ghcr.io/autamus/cfitsio CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.
GITHUB ghcr.io/autamus/circos Circos is a software package for visualizing data and information. circos
GITHUB ghcr.io/autamus/clhep CLHEP is a C++ library that provides utility classes for general numerical programming, vector arithmetic, geometry, pseudorandom number generation, and linear algebra, specifically targeted for high energy physics simulation and analysis software. Cast-config, Evaluator-config, Exceptions-config, GenericFunctions-config, Geometry-config, Matrix-config, Random-config, RandomObjects-config, RefCount-config, Units-config, Utility-config, Vector-config, clhep-config
GITHUB ghcr.io/autamus/clingo An ASP system to ground and solve logic programs. clingo, gringo
GITHUB ghcr.io/autamus/cloc cloc is a command line program that takes file, directory, and/or archive names as inputs. cloc
GITHUB ghcr.io/autamus/conduit Conduit is an open source project from Lawrence Livermore National Laboratory that provides an intuitive model for describing hierarchical scientific data in C++, C, Fortran, and Python. conduit_blueprint_verify, conduit_relay_entangle.py, conduit_relay_io_convert, conduit_relay_io_ls, conduit_relay_node_viewer, conduit_staging, conduit_staging.sh
GITHUB ghcr.io/autamus/corset Corset is a command-line program to go from a de novo transcriptome assembly to gene-level counts. corset, corset_fasta_ID_changer
GITHUB ghcr.io/autamus/cowsay What does the cow say? cowsay
GITHUB ghcr.io/autamus/cufflinks Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. cuffcompare, cuffdiff, cufflinks, cuffmerge, cuffnorm, cuffquant
GITHUB ghcr.io/autamus/curl cURL is a computer software project providing a library and command-line tool for transferring data using various network protocols. The name stands for 'Client URL', which was first released in 1997. c_rehash, curl, curl-config
GITHUB ghcr.io/autamus/dakota The Dakota project delivers both state-of-the-art research and robust, usable software for optimization and UQ. Broadly, the Dakota software's advanced parametric analyses enable design exploration, model calibration, risk analysis, and quantification of margins and uncertainty with computational models. dakota, dakota_library_mode, dakota_library_split, dakota_order_input, dakota_restart_util
GITHUB ghcr.io/autamus/datatransferkit DataTransferKit is an open-source software library of parallel solution transfer services for multiphysics simulations
GITHUB ghcr.io/autamus/diamond A sequence aligner for protein and translated DNA searches, designed for high performance analysis of big sequence data. diamond
GITHUB ghcr.io/autamus/dyninst DyninstAPI - Tools for binary instrumentation, analysis, and modification.
GITHUB ghcr.io/autamus/eagle Explicit Alternative Genome Likelihood Evaluator eagle, eagle-nm, eagle-rc
GITHUB ghcr.io/autamus/ed GNU ed is a line-oriented text editor used to create, display, modify and otherwise manipulate text files, both interactively and via shell scripts https://www.gnu.org/software/ed. ed, red
GITHUB ghcr.io/autamus/emacs The Emacs programmable text editor. https://www.gnu.org/software/emacs ebrowse, emacs, emacsclient, etags
GITHUB ghcr.io/autamus/faodel Flexible, Asynchronous, Object Data-Exchange Libraries faodel
GITHUB ghcr.io/autamus/fastqc A quality control tool for high throughput sequence data. fastqc
GITHUB ghcr.io/autamus/ffmpeg FFmpeg is a free and open-source software project consisting of a large suite of libraries and programs for handling video, audio, and other multimedia files and streams. ffmpeg, ffprobe
GITHUB ghcr.io/autamus/flit Floating-point Litmus Tests (FLiT) is a C++ test infrastructure for detecting variability in floating-point code caused by variations in compiler code generation, hardware and execution environments. flit
GITHUB ghcr.io/autamus/fraggenescan An application for finding (fragmented) genes in short reads.
GITHUB ghcr.io/autamus/gasnet GASNet is a language-independent, networking middleware layer that provides network-independent, high-performance communication primitives including Remote Memory Access (RMA) and Active Messages (AM). gasnet_trace, gasnet_trace.pl
GITHUB ghcr.io/autamus/gatk GATK (pronounced 'Gee-ay-tee-kay', not 'Gat-kay'), stands for GenomeAnalysisToolkit. It is a collection of command-line tools for analyzing high-throughput sequencing data with a primary focus on variant discovery. gatk
GITHUB ghcr.io/autamus/gawk gawk is the GNU implementation of awk. The awk utility interprets a special-purpose programming language that makes it possible to handle simple data-reformatting jobs with just a few lines of code. https://www.gnu.org/software/gawk/ gawk
GITHUB ghcr.io/autamus/gcc The GNU Compiler Collection c++, cpp, g++, gcc, gcc-ar, gcc-nm, gcc-ranlib, gcov, gcov-dump, gcov-tool, gfortran, zstd
GITHUB ghcr.io/autamus/gdal GDAL is a translator library for raster and vector geospatial data formats that is released under an X/MIT style Open Source License by the Open Source Geospatial Foundation. gdal-config, gdal_contour, gdal_create, gdal_grid, gdal_rasterize, gdal_translate, gdal_viewshed, gdaladdo, gdalbuildvrt, gdaldem, gdalenhance, gdalinfo, gdallocationinfo, gdalmanage, gdalmdiminfo, gdalmdimtranslate, gdalsrsinfo, gdaltindex, gdaltransform, gdalwarp
GITHUB ghcr.io/autamus/geant4 Geant4 is a platform for the simulation of the passage of particles through matter using Monte Carlo methods. Cast-config, CreateDOMDocument, DOMCount, DOMPrint, EnumVal, Evaluator-config, Exceptions-config, GenericFunctions-config, Geometry-config, Matrix-config, MemParse, PParse, PSVIWriter, Random-config, RandomObjects-config, Redirect, RefCount-config, SAX2Count, SAX2Print, SAXCount, SAXPrint, SCMPrint, SEnumVal, StdInParse, Units-config, Utility-config, Vector-config, XInclude, geant4-config, geant4.csh, geant4.sh
GITHUB ghcr.io/autamus/geos GEOS is a C++11 library for performing operations on two-dimensional vector geometries. geos-config
GITHUB ghcr.io/autamus/ginkgo High-performance linear algebra library for manycore systems, with a focus on sparse solution of linear systems.
GITHUB ghcr.io/autamus/git Git is software for tracking changes in any set of files, usually used for coordinating work among programmers collaboratively developing source code during software development. Its goals include speed, data integrity, and support for distributed, non-linear workflows. git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack
GITHUB ghcr.io/autamus/glpk The GLPK package is a set of routines written in ANSI C and organized in the form of a callable library. This package is intended for solving large-scale linear programming (LP), mixed integer linear programming (MIP), and other related problems. glpsol
GITHUB ghcr.io/autamus/gmp GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating-point numbers. curl
GITHUB ghcr.io/autamus/gnuplot Gnuplot is a portable command-line driven graphing utility for Linux, OS/2, MS Windows, OSX, VMS, and many other platforms. gnuplot
GITHUB ghcr.io/autamus/gotcha C software library for shared library function wrapping, enables tools to intercept calls into shared libraries
GITHUB ghcr.io/autamus/graphviz Graphviz is open source graph visualization software. gc, gml2gv, graphml2gv, gv2gml, gv2gxl, gvcolor, gvgen, gvmap, gvmap.sh, gvpack, gvpr, gxl2dot, gxl2gv
GITHUB ghcr.io/autamus/grass GRASS GIS (https://grass.osgeo.org/) is a Geographic Information System used for geospatial data management and analysis, image processing, graphics/map production, spatial modeling, and visualization. grass78
GITHUB ghcr.io/autamus/gromacs A versatile package to perform molecular dynamics.
GITHUB ghcr.io/autamus/gsl The GNU Scientific Library. gsl-config, gsl-histogram, gsl-randist
GITHUB ghcr.io/autamus/hdf5 HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections. h5clear, h5copy, h5debug, h5diff, h5dump, h5format_convert, h5import, h5jam, h5ls, h5mkgrp, h5pcc, h5perf, h5perf_serial, h5redeploy, h5repack, h5repart, h5stat, h5unjam
GITHUB ghcr.io/autamus/heaptrack Heaptrack traces all memory allocations and annotates these events with stack traces. heaptrack, heaptrack_print
GITHUB ghcr.io/autamus/hisat2 HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes as well as to a single reference genome. hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, hisatgenotype.py, hisatgenotype_build_genome.py, hisatgenotype_extract_reads.py, hisatgenotype_extract_vars.py, hisatgenotype_hla_cyp.py, hisatgenotype_locus.py
GITHUB ghcr.io/autamus/hmmer HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. hmmalign, hmmbuild, hmmconvert, hmmemit, hmmfetch, hmmlogo, hmmpgmd, hmmpgmd_shard, hmmpress, hmmscan, hmmsearch, hmmsim, hmmstat
GITHUB ghcr.io/autamus/hpctoolkit HPCToolkit is an integrated suite of tools for measurement and analysis of program performance on computers ranging from multicore desktop systems to the nation's largest supercomputers. hello, hpclink, hpcprof, hpcrun, hpcstruct, hpcviewer
GITHUB ghcr.io/autamus/hpx C++ runtime system for parallel and distributed applications. hpxcxx, hpxrun.py
GITHUB ghcr.io/autamus/htop htop is an interactive text-mode process viewer for Unix systems. https://github.com/hishamhm/htop htop
GITHUB ghcr.io/autamus/htslib A C library for reading/writing high-throughput sequencing data. htsfile
GITHUB ghcr.io/autamus/hypre A library of high performance preconditioners and solvers featuring multigrid methods for the solution of large, sparse linear systems of equations on massively parallel computers.
GITHUB ghcr.io/autamus/igraph igraph is a library collection for creating and manipulating graphs and analyzing networks. It is written in C and also exists as Python and R packages.
GITHUB ghcr.io/autamus/intel-mkl Intel oneAPI Math Kernel Library, formerly just Intel Math Kernel Library, is a library of optimized math routines for science, engineering, and financial applications.
GITHUB ghcr.io/autamus/ior IOR is a parallel IO benchmark that can be used to test the performance of parallel storage systems using various interfaces and access patterns. ior
GITHUB ghcr.io/autamus/iq-tree IQ-TREE (http://www.iqtree.org, last accessed February 6, 2020) is a user-friendly and widely used software package for phylogenetic inference using maximum likelihood. iq-tree2
GITHUB ghcr.io/autamus/jags Just Another Gibbs Sampler. A program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation. jags
GITHUB ghcr.io/autamus/jasper JasPer is a collection of software (i.e., a library and application programs) for the coding and manipulation of images. jasper, jpegtran
GITHUB ghcr.io/autamus/julia Julia is a high-level, high-performance, dynamic programming language. julia
GITHUB ghcr.io/autamus/kallisto kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. kallisto
GITHUB ghcr.io/autamus/kraken2 Kraken 2 is the newest version of Kraken, a taxonomic classification system using exact k-mer matches to achieve high accuracy and fast classification speeds. kraken2, kraken2-build, kraken2-inspect, kraken2lib.pm
GITHUB ghcr.io/autamus/lammps LAMMPS is a classical molecular dynamics code with a focus on materials modeling.
GITHUB ghcr.io/autamus/legion Legion is a data-centric parallel programming system for writing portable high performance programs targeted at distributed heterogeneous architectures. legion_prof.py, legion_serializer.py, legion_spy.py
GITHUB ghcr.io/autamus/libnrm Libnrm, the application instrumentation library for the Node Resource Manager(NRM).
GITHUB ghcr.io/autamus/libpng libpng is the official PNG reference library. libpng-config, libpng16-config, png-fix-itxt, pngfix
GITHUB ghcr.io/autamus/libquo QUO (as in status quo) is a runtime library that aids in accommodating thread-level heterogeneity in dynamic, phased MPI+X applications comprising single- and multi-threaded libraries. quo-info
GITHUB ghcr.io/autamus/libtiff Libtiff is a library for reading and writing Tagged Image File Format (abbreviated TIFF) files. fax2tiff, ppm2tiff, raw2tiff, tiff2bw, tiff2pdf, tiff2ps, tiff2rgba, tiffcmp, tiffcp, tiffcrop, tiffdither, tiffdump, tiffinfo, tiffmedian, tiffset, tiffsplit
GITHUB ghcr.io/autamus/libunwind A portable and efficient C programming interface (API) to determine the call-chain of a program.
GITHUB ghcr.io/autamus/libxpm The X PixMap image format is an extension of the monochrome X BitMap format specified in the X protocol, and is commonly used in traditional X applications.
GITHUB ghcr.io/autamus/lmod The Persistence of Vision Ray Tracer, most commonly acronymed as POV-Ray, is a cross-platform ray-tracing program that generates images from a text-based scene description. module
GITHUB ghcr.io/autamus/loki Loki is a C++ library of designs, containing flexible implementations of common design patterns and idioms.
GITHUB ghcr.io/autamus/lp-solve Lp_solve is freely available (under LGPL 2) software for solving linear, integer and mixed integer programs. lp_solve
GITHUB ghcr.io/autamus/mafft MAFFT is a multiple sequence alignment program for unix-like operating systems. mafft, mafft-distance, mafft-einsi, mafft-fftns, mafft-fftnsi, mafft-ginsi, mafft-linsi, mafft-nwns, mafft-nwnsi, mafft-profile, mafft-qinsi, mafft-xinsi
GITHUB ghcr.io/autamus/meme The MEME suite provides online tools for discovering and using protein and DNA sequence motifs. meme, meme-chip, memhog
GITHUB ghcr.io/autamus/mercurial Mercurial is a distributed revision control tool for software developers. hg
GITHUB ghcr.io/autamus/mercury Mercury is a C library for implementing RPC, optimized for HPC
GITHUB ghcr.io/autamus/metall A Persistent Memory Allocator For Data-Centric Analytics
GITHUB ghcr.io/autamus/migrate Migrate estimates effective population sizes and past migration rates between n population assuming a migration matrix model with asymmetric migration rates and different subpopulation sizes migrate-n
GITHUB ghcr.io/autamus/mothur A single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community. mothur
GITHUB ghcr.io/autamus/mpc mithi/mpc: A software pipeline using the Model Predictive Control method to drive a car around a virtual track.
GITHUB ghcr.io/autamus/mpfr The MPFR library is a C library for multiple-precision floating-point computations with correct rounding.
GITHUB ghcr.io/autamus/mummer MUMmer is a system for rapidly aligning entire genomes. mummer, mummerplot
GITHUB ghcr.io/autamus/muscle Multiple Sequence Alignment. muscle
GITHUB ghcr.io/autamus/nco nc-config, ncap2, ncatted, ncbo, ncclimo, nccopy, ncdiff, ncdump, ncea, ncecat, nces, ncflint, ncgen, ncgen3, ncks, ncpdq, ncra, ncrcat, ncremap, ncrename, ncurses6-config, ncursesw6-config, ncwa
GITHUB ghcr.io/autamus/ninja Ninja is a small build system with a focus on speed. ninja, ninja-build
GITHUB ghcr.io/autamus/node-js A JavaScript runtime built on Chrome's V8 JavaScript engine. node
GITHUB ghcr.io/autamus/octave GNU Octave is a high-level interpreted language, primarily intended for numerical computations (like an open source Matlab) octave, octave-6.2.0, octave-cli, octave-cli-6.2.0, octave-config, octave-config-6.2.0
GITHUB ghcr.io/autamus/omega-h Omega_h is a C++11 library providing data structures and algorithms for adaptive discretizations.
GITHUB ghcr.io/autamus/openbabel Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas. obabel, obconformer, obdistgen, obenergy, obfit, obfitall, obgen, obgrep, obminimize, obmm, obprobe, obprop, obrms, obrotamer, obrotate, obspectrophore, obsym, obtautomer, obthermo
GITHUB ghcr.io/autamus/opencv OpenCV is a library of programming functions mainly aimed at real-time computer vision. Originally developed by Intel, it was later supported by Willow Garage then Itseez. opencv_version, setup_vars_opencv4.sh
GITHUB ghcr.io/autamus/openjdk Open Java Development Kit jaotc, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jdeps, jfr, jhsdb, jimage, jinfo, jjs, jlink, jmap, jmod, jps, jrunscript, jshell, jstack, jstat, jstatd
GITHUB ghcr.io/autamus/openmpi An open source Message Passing Interface implementation. mpiCC, mpic++, mpicc, mpicxx, mpiexec, mpif77, mpif90, mpifort, mpirun, ompi-clean, ompi-server, ompi_info
GITHUB ghcr.io/autamus/pandaseq A program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. pandaseq, pandaseq-checkid, pandaseq-diff, pandaseq-hang, pandaxs
GITHUB ghcr.io/autamus/papi Performance Application Programming Interface. papi_avail, papi_clockres, papi_command_line, papi_component_avail, papi_cost, papi_decode, papi_error_codes, papi_event_chooser, papi_hl_output_writer.py, papi_mem_info, papi_multiplex_cost, papi_native_avail, papi_version, papi_xml_event_info
GITHUB ghcr.io/autamus/papyrus Parallel Aggregate Persistent Storage
GITHUB ghcr.io/autamus/parallel-netcdf PnetCDF (Parallel netCDF) is a high-performance parallel I/O library for accessing files in format compatibility with Unidata's NetCDF, specifically the formats of CDF-1, 2, and 5. pnetcdf-config, pnetcdf_version
GITHUB ghcr.io/autamus/pdt Program Database Toolkit (PDT) is a framework for analyzing source code written in several programming languages and for making rich program knowledge accessible to developers of static and dynamic analysis tools.
GITHUB ghcr.io/autamus/perl The Perl programming language. perl, perlbug, perldoc, perlivp, perlthanks
GITHUB ghcr.io/autamus/petsc PETSc is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.
GITHUB ghcr.io/autamus/phist The Pipelined, Hybrid-parallel Iterative Solver Toolkit provides implementations of and interfaces to block iterative solvers for sparse linear and eigenvalue problems. phist_Danasazi_krylov_schur, phist_Danasazi_lobpcg, phist_Dbelos_bgmres, phist_Dbelos_bpcg, phist_Dblockedbicgstab, phist_Dblockedgmres, phist_Dblockedpcg, phist_Dsimple_lanczos, phist_Dsubspacejada, phist_carp_cg
GITHUB ghcr.io/autamus/picard A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. picard, picard.jar
GITHUB ghcr.io/autamus/plasma Parallel Linear Algebra Software for Multicore Architectures, PLASMA is a software package for solving problems in dense linear algebra using multicore processors and Xeon Phi coprocessors. plasmatest
GITHUB ghcr.io/autamus/plink PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. plink
GITHUB ghcr.io/autamus/poppler Poppler is a free software utility library for rendering Portable Document Format (PDF) documents. pdfattach, pdfdetach, pdffonts, pdfimages, pdfinfo, pdfseparate, pdftohtml, pdftops, pdftotext, pdfunite, png-fix-itxt, pngfix
GITHUB ghcr.io/autamus/povray The Persistence of Vision Ray Tracer, most commonly acronymed as POV-Ray, is a cross-platform ray-tracing program that generates images from a text-based scene description. povray
GITHUB ghcr.io/autamus/precice preCICE (Precise Code Interaction Coupling Environment) is a coupling library for partitioned multi-physics simulations.
GITHUB ghcr.io/autamus/prodigal Prodigal Gene Prediction Software prodigal
GITHUB ghcr.io/autamus/proj PROJ is a generic coordinate transformation software, that transforms coordinates from one coordinate reference system (CRS) to another. proj, projinfo, projsync
GITHUB ghcr.io/autamus/protobuf Protocol Buffers is a method of serializing structured data. It is useful in developing programs to communicate with each other over a network or for storing data. protoc, protoc-3.15.8.0
GITHUB ghcr.io/autamus/pumi SCOREC RPI's Parallel Unstructured Mesh Infrastructure (PUMI). print_pumipic_partition
GITHUB ghcr.io/autamus/py-libensemble Library for managing ensemble-like collections of computations.
GITHUB ghcr.io/autamus/py-petsc4py This package provides Python bindings for the PETSc package.
GITHUB ghcr.io/autamus/python An interpreted, high-level and general-purpose programming language. pydoc3, pydoc3.8, python, python-config, python3, python3-config, python3.8, python3.8-config, python3.8-gdb.py
GITHUB ghcr.io/autamus/qhull Snappy (previously known as Zippy) is a fast data compression and decompression library written in C++ by Google based on ideas from LZ77 and open-sourced in 2011. qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox
GITHUB ghcr.io/autamus/r-seqlogo Sequence logos for DNA sequence alignments
GITHUB ghcr.io/autamus/r R is a language and environment for statistical computing and graphics. R
GITHUB ghcr.io/autamus/raxml RAxML (Randomized Axelerated Maximum Likelihood) is a popular program for phylogenetic analysis of large datasets under maximum likelihood. raxmlHPC, raxmlHPC-AVX, raxmlHPC-MPI, raxmlHPC-MPI-AVX, raxmlHPC-MPI-SSE3, raxmlHPC-SSE3
GITHUB ghcr.io/autamus/rclone Rclone is a command line program to manage files on cloud storage. rclone
GITHUB ghcr.io/autamus/rempi ReMPI is a record-and-replay tool for MPI applications. rempi, rempi_record, rempi_replay, reset
GITHUB ghcr.io/autamus/rsync An open source utility that provides fast incremental file transfer. https://rsync.samba.org/ rsync, rsync-ssl
GITHUB ghcr.io/autamus/ruby An interpreted, high-level, general-purpose programming language. bundle, bundler, erb, gem, irb, racc, rake, rbs, rdoc, ri, ruby
GITHUB ghcr.io/autamus/rust Rust is a multi-paradigm programming language designed for performance and safety, especially safe concurrency. cargo, cargo-clippy, cargo-fmt, clippy-driver, rust, rust-gdb, rust-gdbgui, rust-lldb, rustc, rustdoc, rustfmt
GITHUB ghcr.io/autamus/salmon Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data. salmon
GITHUB ghcr.io/autamus/samtools Samtools is a suite of programs for interacting with high-throughput sequencing data. blast2sam.pl, bowtie2sam.pl, export2sam.pl, fasta-sanitize.pl, interpolate_sam.pl, novo2sam.pl, psl2sam.pl, sam2vcf.pl, samtools, samtools.pl, seq_cache_populate.pl, soap2sam.pl, wgsim_eval.pl, zoom2sam.pl
GITHUB ghcr.io/autamus/scons SCons is an Open Source software construction tool. scons, scons-3.1.2, scons-3.1.2.bat, scons-configure-cache, scons-configure-cache-3.1.2, scons-time, scons-time-3.1.2, scons.bat, sconsign, sconsign-3.1.2
GITHUB ghcr.io/autamus/scr SCR caches checkpoint data in storage on the compute nodes of a Linux cluster to provide a fast, scalable checkpoint/restart capability for MPI codes. scancel, scontrol, scp, scr_check_node, scr_ckpt_interval.py, scr_copy, scr_crc32, scr_env, scr_flush_file, scr_get_jobstep_id, scr_glob_hosts, scr_halt, scr_halt_cntl, scr_index, scr_inspect, scr_kill_jobstep, scr_list_dir, scr_list_down_nodes, scr_log_event, scr_log_transfer, scr_nodes_file, scr_postrun, scr_prefix, scr_prerun, scr_print, scr_rebuild_partner, scr_rebuild_rs, scr_rebuild_xor, scr_retries_halt, scr_run, scr_scavenge, scr_srun, scr_test_datemanip, scr_test_runtime, scr_watchdog, scrlog.py, scrontab
GITHUB ghcr.io/autamus/siesta SIESTA performs electronic structure calculations and ab initio molecular dynamics simulations of molecules and solids. siesta
GITHUB ghcr.io/autamus/slate The Software for Linear Algebra Targeting Exascale (SLATE) project is to provide fundamental dense linear algebra capabilities to the US Department of Energy and to the high-performance computing (HPC) community at large.
GITHUB ghcr.io/autamus/slepc Scalable Library for Eigenvalue Problem Computations.
GITHUB ghcr.io/autamus/snappy Snappy (previously known as Zippy) is a fast data compression and decompression library written in C++ by Google based on ideas from LZ77 and open-sourced in 2011.
GITHUB ghcr.io/autamus/spades St. Petersburg genome assembler – an assembly toolkit containing various assembly pipelines. spades-bwa, spades-convert-bin-to-fasta, spades-core, spades-corrector-core, spades-gbuilder, spades-gmapper, spades-gsimplifier, spades-hammer, spades-ionhammer, spades-kmer-estimating, spades-kmercount, spades-read-filter, spades-truseq-scfcorrection, spades.py, spaligner
GITHUB ghcr.io/autamus/sparsehash several hash-map implementations, similar in API to SGI's hash_map class, but with different performance characteristics.
GITHUB ghcr.io/autamus/sqlite SQLite is a relational database management system contained in a C library. sqlite3
GITHUB ghcr.io/autamus/stc The Swift-Turbine Compiler (STC) stc, swift-t
GITHUB ghcr.io/autamus/stringtie StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. stringtie
GITHUB ghcr.io/autamus/superlu SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines.
GITHUB ghcr.io/autamus/sz Error-bounded Lossy Compressor for HPC Data sz
GITHUB ghcr.io/autamus/tasmanian The Toolkit for Adaptive Stochastic Modeling and Non-Intrusive ApproximatioN is a robust library for high dimensional integration and interpolation as well as parameter calibration. https://tasmanian.ornl.gov tasgrid
GITHUB ghcr.io/autamus/tau A portable profiling and tracing toolkit for performance analysis of parallel programs written in Fortran, C, C++, UPC, Java, Python.
GITHUB ghcr.io/autamus/tcsh tcsh
GITHUB ghcr.io/autamus/trilinos The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented software framework for the solution of large-scale, complex multi-physics engineering and scientific problems. A unique design feature of Trilinos is its focus on packages.
GITHUB ghcr.io/autamus/turbine Turbine is the Swift/T runtime turbine, turbine-pilot, turbine-read-doubles, turbine-write-doubles
GITHUB ghcr.io/autamus/udunits The UDUNITS package supports units of physical quantities. Its C library provides for arithmetic manipulation of units and for conversion of numeric values between compatible units. udunits2
GITHUB ghcr.io/autamus/umap Umap is a library that provides an mmap()-like interface to a simple, user-space page fault handler based on the userfaultfd Linux feature (starting with 4.3 linux kernel).
GITHUB ghcr.io/autamus/unifyfs User level file system that enables applications to use node-local storage as burst buffers for shared files. unifyfs, unifyfs-config, unifyfsd
GITHUB ghcr.io/autamus/unixodbc unixODBC-Test containing Qt based ODBC test tool, and autotest framework. odbc_config, odbcinst
GITHUB ghcr.io/autamus/upcxx UPC++ is a C++ library that supports Partitioned Global Address Space (PGAS) programming, and is designed to interoperate smoothly and efficiently with MPI, OpenMP, CUDA and AMTs. upcxx, upcxx-meta, upcxx-run, upcxx.sh
GITHUB ghcr.io/autamus/valgrind A suite of tools for debugging and profiling. valgrind, valgrind-di-server, valgrind-listener
GITHUB ghcr.io/autamus/veloc Very-Low Overhead Checkpointing System. VELOC is a multi-level checkpoint-restart runtime for HPC supercomputing infrastructures veloc-backend, veloc_check_node, veloc_env, veloc_glob_hosts, veloc_jsrun, veloc_list_down_nodes
GITHUB ghcr.io/autamus/wget GNU Wget is a free software package for retrieving files using HTTP, HTTPS, FTP and FTPS, the most widely used Internet protocols. wget
GITHUB ghcr.io/autamus/xnnpack High-efficiency floating-point neural network inference operators for mobile, server, and Web
GITHUB ghcr.io/autamus/xrootd XRootD software framework is a fully generic suite for fast, low latency and scalable data access, which can serve natively any kind of data, organized as a hierarchical filesystem-like namespace, based on the concept of directory. xrdacctest, xrdadler32, xrdcopy, xrdcp, xrdfs, xrdgsiproxy, xrdgsitest, xrdmapc, xrdpfc_print, xrdpinls, xrdpwdadmin, xrdsssadmin, xrootd, xrootd-config
GITHUB ghcr.io/autamus/xz XZ Utils is free general-purpose data compression software with a high compression ratio. xz, xzcat, xzcmp, xzdec, xzdiff, xzegrep, xzfgrep, xzgrep, xzless, xzmore
GITHUB ghcr.io/autamus/zfp zfp is a compressed number format for multidimensional floating-point and integer arrays.
GITHUB ghcr.io/autamus/zlib zlib is a software library used for data compression. zlib was written by Jean-loup Gailly and Mark Adler and is an abstraction of the DEFLATE compression algorithm used in their gzip file compression program.
GITHUB ghcr.io/singularityhub/github-ci An example SIF on GitHub packages to pull with oras
GITHUB golang Go (a.k.a., Golang) is a programming language first developed at Google. go, gofmt
GITHUB gradle Gradle is a build tool with a focus on build automation and support for multi-language development. gradle
GITHUB julia An interpreted, high-level, high-performance dynamic programming language for technical computing. julia
GITHUB jupyter/datascience-notebook Jupyter Datascience Notebook from https://github.com/jupyter/docker-stacks run-notebook
GITHUB jupyter/minimal-notebook Jupyter Minimal Notebook from https://github.com/jupyter/docker-stacks run-notebook
GITHUB jupyter/pyspark-notebook Jupyter Pyspark Notebook from https://github.com/jupyter/docker-stacks run-notebook
GITHUB jupyter/r-notebook Jupyter R Notebook from https://github.com/jupyter/docker-stacks run-notebook
GITHUB jupyter/scipy-notebook Jupyter Notebook Scientific Python Stack from https://github.com/jupyter/docker-stacks run-notebook
GITHUB jupyter/tensorflow-notebook Jupyter Tensorflow Notebook from https://github.com/jupyter/docker-stacks run-notebook
GITHUB kibana Kibana gives shape to any kind of data β€” structured and unstructured β€” indexed in Elasticsearch. kibana, kibana-encryption-keys, kibana-keystore, kibana-plugin
GITHUB mariadb MariaDB Server is one of the most popular database servers in the world. It’s made by the original developers of MySQL and guaranteed to stay open source. Notable users include Wikipedia, DBS Bank and ServiceNow. mariabackup, mariadb, mariadb-access, mariadb-admin, mariadb-analyze, mariadb-backup, mariadb-binlog, mariadb-check, mariadb-conv, mariadb-convert-table-format, mariadb-dump, mariadb-dumpslow, mariadb-find-rows, mariadb-fix-extensions, mariadb-hotcopy, mariadb-import, mariadb-install-db, mariadb-optimize, mariadb-plugin, mariadb-repair, mariadb-report, mariadb-secure-installation, mariadb-service-convert, mariadb-setpermission, mariadb-show, mariadb-slap, mariadb-tzinfo-to-sql, mariadb-upgrade, mariadb-waitpid, mariadbcheck, mariadbd-multi, mariadbd-safe, mariadbd-safe-helper
GITHUB mongo MongoDB is a free and open-source cross-platform document-oriented database program. Classified as a NoSQL database program, MongoDB uses JSON-like documents with schemata. mongo, mongod, mongodump, mongoexport, mongofiles, mongoimport, mongos, mongostat, mongostore, mongotop
GITHUB mysql MySQL is the world's most popular open source database. mysql, mysql_config_editor, mysql_secure_installation, mysql_ssl_rsa_setup, mysql_tzinfo_to_sql, mysql_upgrade, mysqladmin, mysqlbinlog, mysqlcheck, mysqld_multi, mysqld_safe, mysqldump, mysqldumpslow, mysqlimport, mysqlpump, mysqlshow, mysqlslap
GITHUB ncbi/blast The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.
GITHUB nginx Nginx (pronounced 'engine-x') is an open source reverse proxy server for HTTP, HTTPS, SMTP, POP3, and IMAP protocols, as well as a load balancer, HTTP cache, and a web server (origin server). nginx, nginx-debug
GITHUB node Node.js is a software platform for scalable server-side and networking applications. node, nodejs, npm, npx, yarn, yarnpkg
GITHUB nvcr.io/hpc/autodock The AutoDock-GPU Suite is a growing collection of methods for computational docking and virtual screening, for use in structure-based drug discovery and exploration of the basic mechanisms of biomolecular structure and function. More info on AutoDock-GPU be located at https://ccsb.scripps.edu/autodock/ and https://github.com/ccsb-scripps/AutoDock-GPU#usage. autodock
GITHUB nvcr.io/hpc/gromacs GROMACS is a popular molecular dynamics application used to simulate proteins and lipids. python
GITHUB nvcr.io/hpc/lammps Large-scale Atomic/Molecular Massively Parallel Simulator (LAMMPS) is a software application designed for molecular dynamics simulations. It has the potentials for solid-state materials (metals, semiconductor), soft matter (biomolecules, polymers), and coarse-grained or mesoscopic systems. The main use-case is atom scale particle modeling or, more generically, as a parallel particle simulator at the atomic, meson, or continuum scale. LAMMPS runs on single processors or in parallel using message-passing techniques and a spatial-decomposition of the simulation domain. Read more on the LAMMPS website https://lammps.sandia.gov/.
GITHUB nvcr.io/hpc/namd NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD uses the popular molecular graphics program VMD for simulation setup and trajectory analysis, but is also file-comp atible with AMBER, CHARMM, and X-PLOR. charmrun, flipbinpdb, flipdcd, namd3, psfgen, sortreplicas, vmd
GITHUB nvcr.io/hpc/preflightcheck The Pre-Flight Check container verifies that the container runtime is setup correctly for GPUs and InfiniBand.
GITHUB nvcr.io/hpc/quantum_espresso Quantum ESPRESSO is an integrated suite of Open-Source computer codes for electronic-structure calculations and materials modeling at the nanoscale based on density-functional theory, plane waves, and pseudopotentials.
GITHUB nvcr.io/nvidia/caffe NVIDIA Caffe, also known as NVCaffe, is an NVIDIA-maintained fork of Berkeley Vision and Learning Center (BVLC) Caffe tuned for NVIDIA GPUs, particularly in multi-GPU configurations. python
GITHUB nvcr.io/nvidia/digits The NVIDIA Deep Learning GPU Training System (DIGITS) puts the power of deep learning into the hands of engineers and data scientists. python
GITHUB nvcr.io/nvidia/hpc-benchmarks The NVIDIA HPC-Benchmarks collection provides three NVIDIA accelerated HPC benchmarks: HPL-NVIDIA, HPL-AI-NVIDIA, and HPCG-NVIDIA.
GITHUB nvcr.io/nvidia-hpcvis/paraview ParaView is one of the most popular visualization software for analyzing HPC datasets. pvdataserver, pvrenderserver, pvbatch, pypython, pvserver
GITHUB nvcr.io/nvidia/pytorch PyTorch is a GPU accelerated tensor computational framework with a Python front end. Functionality can be easily extended with common Python libraries such as NumPy, SciPy, and Cython. Automatic differentiation is done with a tape-based system at both a functional and neural network layer level.
GITHUB nvcr.io/nvidia/rapidsai/rapidsai The RAPIDS suite of software libraries gives you the freedom to execute end-to-end data science and analytics pipelines entirely on GPUs. python
GITHUB nvcr.io/nvidia/tensorflow TensorFlow is an open-source software library for high-performance numerical computation. Its flexible architecture allows easy deployment of computation across a variety of platforms (CPUs, GPUs, TPUs), and from desktops to clusters of servers to mobile and edge devices.
GITHUB openjdk OpenJDK is an open-source implementation of the Java Platform, Standard Edition. jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jdeprscan, jdeps, jfr, jhsdb, jimage, jinfo, jlink, jmap, jmod, jobs, join, jpackage, jps, jrunscript, jshell, jstack, jstat, jstatd
GITHUB php While designed for web development, the PHP scripting language also provides general-purpose use. php, php-cgi, php-config, phpdbg, phpize
GITHUB poldracklab/mriqc Automatic prediction of quality and visual reporting of MRI scans. mriqc
GITHUB postgres PostgreSQL, often simply 'Postgres', is an object-relational database management system (ORDBMS) with an emphasis on extensibility and standards-compliance. clusterdb, createdb, createuser, dropdb, dropuser, initdb, oid2name, pg_archivecleanup, pg_basebackup, pg_checksums, pg_config, pg_controldata, pg_ctl, pg_dump, pg_dumpall, pg_isready, pg_receivewal, pg_recvlogical, pg_resetwal, pg_restore, pg_rewind, pg_standby, pg_test_fsync, pg_test_timing, pg_upgrade, pg_verifybackup, pg_waldump, pgbench, postgres, postmaster, psql, reindexdb, vacuumdb, vacuumlo
GITHUB python An interpreted, high-level and general-purpose programming language. python
GITHUB quay.io/biocontainers/10x_bamtofastq singularity registry hpc automated addition for 10x_bamtofastq bamtofastq
GITHUB quay.io/biocontainers/2pg_cartesian shpc-registry automated BioContainers addition for 2pg_cartesian gmx, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, protpred-Gromacs-Dominance, protpred-Gromacs-Front, protpred-Gromacs-MC_Metropolis, protpred-Gromacs-Mono, protpred-Gromacs-NSGA2, protpred-Gromacs-Random_Algorithm, protpred-Gromacs-Sort_Method_Files_by_Front_Dominance, protpred-Gromacs-Sort_Method_by_Front_Dominance, protpred-Gromacs-Test_compute_Diehdral, protpred-Gromacs-Test_compute_objetivies, protpred-Gromacs-Test_crossover, protpred-Gromacs-Test_dm_refinement, protpred-Gromacs-Test_load_population, protpred-Gromacs-Test_random_number, protpred-Gromacs-Test_rotation, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/abacas shpc-registry automated BioContainers addition for abacas abacas.1.3.1.pl, abacas.pl, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot
GITHUB quay.io/biocontainers/abacat shpc-registry automated BioContainers addition for abacat phenotyping.py, prodigal.py, prokka.py, fastANI, annotate.py, prodigal, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/abawaca shpc-registry automated BioContainers addition for abawaca abawaca
GITHUB quay.io/biocontainers/abeona shpc-registry automated BioContainers addition for abeona abeona, cortexpy, kallisto, mccortex, mccortex127, mccortex31, mccortex63, mccortex95, nextflow, nextflow.bak, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown
GITHUB quay.io/biocontainers/abismal shpc-registry automated BioContainers addition for abismal abismal, abismalidx, simreads
GITHUB quay.io/biocontainers/abnumber shpc-registry automated BioContainers addition for abnumber ANARCI, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat
GITHUB quay.io/biocontainers/abpoa shpc-registry automated BioContainers addition for abpoa abpoa
GITHUB quay.io/biocontainers/abra2 shpc-registry automated BioContainers addition for abra2 abra2, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown
GITHUB quay.io/biocontainers/abricate shpc-registry automated BioContainers addition for abricate abricate, abricate-get_db, any2fasta, funzip, unzipsfx, zipgrep, zipinfo, unzip, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee
GITHUB quay.io/biocontainers/abritamr shpc-registry automated BioContainers addition for abritamr abriTAMR, abritamr, amr_report, amrfinder, amrfinder_update, dna_mutation, fasta2parts, fasta_check, fasta_extract, gff_check, vba_extract.py, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml
GITHUB quay.io/biocontainers/abruijn shpc-registry automated BioContainers addition for abruijn abruijn, abruijn-assemble, abruijn-polish, abruijn-repeat, easy_install-2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5
GITHUB quay.io/biocontainers/abundancebin shpc-registry automated BioContainers addition for abundancebin abundancebin
GITHUB quay.io/biocontainers/abyss-k128 shpc-registry automated BioContainers addition for abyss-k128
GITHUB quay.io/biocontainers/abyss shpc-registry automated BioContainers addition for abyss ABYSS, ABYSS-P, abyss-align, abyss-bloom, abyss-bloom-dbg, abyss-bloom-dist.mk, abyss-bloom-dist.mk.Makefile, abyss-bowtie, abyss-bowtie2, abyss-bwa, abyss-bwamem, abyss-bwasw, abyss-db-txt, abyss-dida, abyss-fac, abyss-fatoagp, abyss-filtergraph, abyss-fixmate, abyss-fixmate-ssq, abyss-gapfill, abyss-gc, abyss-index, abyss-junction, abyss-kaligner, abyss-layout, abyss-longseqdist, abyss-map, abyss-map-ssq, abyss-mergepairs, abyss-overlap, abyss-paired-dbg, abyss-paired-dbg-mpi, abyss-pe, abyss-pe.Makefile, abyss-rresolver-short, abyss-samtoafg, abyss-scaffold, abyss-sealer, abyss-stack-size, abyss-tabtomd, abyss-todot, abyss-tofastq, irqtop, lsirq, nsenter, prlimit, scriptlive, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject
GITHUB quay.io/biocontainers/ac-diamond shpc-registry automated BioContainers addition for ac-diamond ac-diamond
GITHUB quay.io/biocontainers/ac shpc-registry automated BioContainers addition for ac AC
GITHUB quay.io/biocontainers/adam shpc-registry automated BioContainers addition for adam adam-shell, adam-submit, beeline, beeline.cmd, csv-import, docker-image-tool.sh, elasticurl, elasticurl_cpp, elastipubsub, find-spark-home, find-spark-home.cmd, find_spark_home.py, load-spark-env.cmd, load-spark-env.sh, orc-memory, orc-scan, pyspark, pyspark.cmd, pyspark2.cmd, run-example, run-example.cmd, spark-class, spark-class.cmd, spark-class2.cmd, spark-shell, spark-shell.cmd, spark-shell2.cmd, spark-sql, spark-sql.cmd, spark-sql2.cmd, spark-submit, spark-submit.cmd, spark-submit2.cmd, sparkR, sparkR.cmd, sparkR2.cmd, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin
GITHUB quay.io/biocontainers/adapt shpc-registry automated BioContainers addition for adapt analyze_coverage.py, design.py, design_naively.py, import_pb_to_tensorboard, pick_test_targets.py, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2
GITHUB quay.io/biocontainers/adapterremoval shpc-registry automated BioContainers addition for adapterremoval AdapterRemoval, perl5.32.1, streamzip
GITHUB quay.io/biocontainers/adapterremovalfixprefix shpc-registry automated BioContainers addition for adapterremovalfixprefix AdapterRemovalFixPrefix, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/addrg shpc-registry automated BioContainers addition for addrg addrg, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/admixtools shpc-registry automated BioContainers addition for admixtools convertf, dof4, dof4a, dowtjack, expfit.sh, gcount, getresult, grabpars, jackdiff, kimf, mergeit, mkpretty, numlines, qp3Pop, qp4diff, qpAdm, qpBound, qpDpart, qpDstat, qpF4ratio, qpGraph, qpWave, qpdslow, qpff3base, qpfmv, qpfstats, qpmix, qpreroot, rexpfit.r, rolloff, rolloffp, simpjack2, wtjack.pl, xtractcol, xtractcolv
GITHUB quay.io/biocontainers/admixture shpc-registry automated BioContainers addition for admixture admixture
GITHUB quay.io/biocontainers/adpred shpc-registry automated BioContainers addition for adpred run-adpred, theano-cache, theano-nose, freeze_graph, mako-render, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard
GITHUB quay.io/biocontainers/advntr shpc-registry automated BioContainers addition for advntr adVNTR-Filtering, advntr, unit2, theano-cache, theano-nose, freeze_graph, mako-render, tf_upgrade_v2, muscle, tflite_convert, saved_model_cli, toco
GITHUB quay.io/biocontainers/aegean shpc-registry automated BioContainers addition for aegean canon-gff3, gaeval, genometools-config, gt, locuspocus, parseval, pmrna, tidygff3, xtractore, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, 2to3-3.9, idle3.9, pydoc3.9
GITHUB quay.io/biocontainers/aenum shpc-registry automated BioContainers addition for aenum 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5, wish8.5
GITHUB quay.io/biocontainers/afplot shpc-registry automated BioContainers addition for afplot
GITHUB quay.io/biocontainers/afterqc shpc-registry automated BioContainers addition for afterqc after.py, barcodeprocesser.py, bubbledetector.py, bubbleprocesser.py, circledetector.py, debubble.py, fastq.py, preprocesser.py, qcreporter.py, qualitycontrol.py, util.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/agat shpc-registry automated BioContainers addition for agat agat_convert_bed2gff.pl, agat_convert_embl2gff.pl, agat_convert_genscan2gff.pl, agat_convert_mfannot2gff.pl, agat_convert_minimap2_bam2gff.pl, agat_convert_sp_gff2bed.pl, agat_convert_sp_gff2gtf.pl, agat_convert_sp_gff2tsv.pl, agat_convert_sp_gff2zff.pl, agat_convert_sp_gxf2gxf.pl, agat_sp_Prokka_inferNameFromAttributes.pl, agat_sp_add_attribute_shortest_exon_size.pl, agat_sp_add_attribute_shortest_intron_size.pl, agat_sp_add_introns.pl, agat_sp_add_start_and_stop.pl, agat_sp_alignment_output_style.pl, agat_sp_clipN_seqExtremities_and_fixCoordinates.pl, agat_sp_compare_two_BUSCOs.pl, agat_sp_compare_two_annotations.pl, agat_sp_complement_annotations.pl, agat_sp_ensembl_output_style.pl, agat_sp_extract_attributes.pl, agat_sp_extract_sequences.pl, agat_sp_filter_by_ORF_size.pl, agat_sp_filter_by_locus_distance.pl, agat_sp_filter_by_mrnaBlastValue.pl, agat_sp_filter_feature_by_attribute_presence.pl, agat_sp_filter_feature_by_attribute_value.pl, agat_sp_filter_feature_from_keep_list.pl, agat_sp_filter_feature_from_kill_list.pl, agat_sp_filter_gene_by_intron_numbers.pl, agat_sp_filter_gene_by_length.pl, agat_sp_filter_incomplete_gene_coding_models.pl, agat_sp_filter_record_by_coordinates.pl, agat_sp_fix_cds_phases.pl, agat_sp_fix_features_locations_duplicated.pl, agat_sp_fix_fusion.pl, agat_sp_fix_longest_ORF.pl, agat_sp_fix_overlaping_genes.pl, agat_sp_fix_small_exon_from_extremities.pl, agat_sp_flag_premature_stop_codons.pl, agat_sp_flag_short_introns.pl, agat_sp_functional_statistics.pl, agat_sp_keep_longest_isoform.pl, agat_sp_kraken_assess_liftover.pl, agat_sp_list_short_introns.pl, agat_sp_load_function_from_protein_align.pl, agat_sp_manage_IDs.pl, agat_sp_manage_UTRs.pl, agat_sp_manage_attributes.pl, agat_sp_manage_functional_annotation.pl, agat_sp_manage_introns.pl, agat_sp_merge_annotations.pl, agat_sp_prokka_fix_fragmented_gene_annotations.pl, agat_sp_sensitivity_specificity.pl, agat_sp_separate_by_record_type.pl, agat_sp_statistics.pl, agat_sp_webApollo_compliant.pl, agat_sq_add_attributes_from_tsv.pl, agat_sq_add_hash_tag.pl, agat_sq_add_locus_tag.pl, agat_sq_count_attributes.pl, agat_sq_filter_feature_from_fasta.pl, agat_sq_list_attributes.pl, agat_sq_manage_IDs.pl, agat_sq_manage_attributes.pl, agat_sq_mask.pl, agat_sq_remove_redundant_entries.pl, agat_sq_repeats_analyzer.pl, agat_sq_reverse_complement.pl, agat_sq_rfam_analyzer.pl, agat_sq_split.pl, agat_sq_stat_basic.pl, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc
GITHUB quay.io/biocontainers/age-metasv shpc-registry automated BioContainers addition for age-metasv age_align
GITHUB quay.io/biocontainers/agfusion shpc-registry automated BioContainers addition for agfusion agfusion, epylint, isort, nose2, nose2-2.7, nose2-3.6, pyensembl, pylint, pyreverse, symilar, coverage, futurize, pasteurize, f2py3.8, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/agg shpc-registry automated BioContainers addition for agg agg
GITHUB quay.io/biocontainers/agrvate shpc-registry automated BioContainers addition for agrvate agrvate, file, snippy, snippy-clean_full_aln, snippy-core, snippy-multi, snippy-vcf_extract_subs, snippy-vcf_report, snippy-vcf_to_tab, vcfnormalizesvs, vcfnull2ref, vcfunphase, snp-sites, filter-table, spdi2prod, vt, seqkit, plotBfst.R, plotHapLrt.R, plotHaplotypes.R, plotPfst.R, plotSmoothed.R
GITHUB quay.io/biocontainers/airr shpc-registry automated BioContainers addition for airr airr-tools, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/akt shpc-registry automated BioContainers addition for akt akt
GITHUB quay.io/biocontainers/albatradis shpc-registry automated BioContainers addition for albatradis add_tradis_tags, albatradis, albatradis-annotation, albatradis-artemis_project, albatradis-gene_reports, albatradis-presence_absence, albatradis-scatterplot, bacteria_tradis, basqcol, check_tradis_tags, combine_tradis_plots, fetchseq, filter_tradis_tags, mixreads, readstats, remove_tradis_tags, simqual, simread, smalt, splitmates, splitreads, tradis_comparison.R, tradis_essentiality.R, tradis_gene_insert_sites, tradis_merge_plots, tradis_plot, trunkreads, fastaq, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches
GITHUB quay.io/biocontainers/alder shpc-registry automated BioContainers addition for alder alder, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/aletsch shpc-registry automated BioContainers addition for aletsch aletsch, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/alevin-fry shpc-registry automated BioContainers addition for alevin-fry alevin-fry
GITHUB quay.io/biocontainers/alfa shpc-registry automated BioContainers addition for alfa alfa, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed
GITHUB quay.io/biocontainers/alfred shpc-registry automated BioContainers addition for alfred alfred, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/align_it shpc-registry automated BioContainers addition for align_it align-it, babel, obchiral, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop
GITHUB quay.io/biocontainers/alignlib-lite shpc-registry automated BioContainers addition for alignlib-lite 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/alignment shpc-registry automated BioContainers addition for alignment 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/alignstats shpc-registry automated BioContainers addition for alignstats alignstats, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/altamisa shpc-registry automated BioContainers addition for altamisa isatab2dot, isatab2isatab, isatab_validate, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/alv shpc-registry automated BioContainers addition for alv alv, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/amap shpc-registry automated BioContainers addition for amap amap, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides
GITHUB quay.io/biocontainers/amas shpc-registry automated BioContainers addition for amas AMAS.py, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/amos shpc-registry automated BioContainers addition for amos AMOScmp, AMOScmp-shortReads, AMOScmp-shortReads-alignmentTrimmed, Bundler, Chainer, FRCurve, FilterEdgesByCluster, Joiner, Linearize, MarkRepeats, Minimo, OrientContigs, OutputMotifs, OutputResults, OutputScaffolds, RankMotifs, ace2contig, agp2amos, amos2ace, amos2frg, amos2mates, amos2sq, amosvalidate, analyze-read-depth, analyzeSNPs, arachne2ctg, arachne2scaff, arrive, arrive2, asmQC, asmQC2, assembleRNAs, astats, bank-clean, bank-combine, bank-mapping, bank-report, bank-transact, bank-tutorial, bank-unlock, bank2contig, bank2coverage, bank2fasta, bank2lib, bank2sam, bank2scaff, benchmark2arachne, benchmark2ca, benchmark2mates, benchmark2ta, benchmark_qual, benchmark_seq, blasr2coords, blat2nucmer, ca2ctg, ca2mates, ca2scaff, ca2singletons, ca2ta, casm-breaks, casm-layout, castats, cavalidate, cestat-cov, cgb2ctg, clk, clusterSnps, contig-cmp, contig2contig, coords2cam, count-kmers, count-qmers, ctg2fasta, ctg2umdcontig, ctgovl, cvgChop, cvgStat, delta2clr, delta2cvg, dumpContigsAsReads, dumpFeatures, dumpmates, dumpreads, excl_seqs, extractContig, extractScaffold, fasta_select_len, fasta_to_fastq, fastq64_to_fastq33, fastq_filter, fastq_rename, fastq_to_fasta_fast, fastqqc, filter_contig, filter_seq, filterfrg, find-duplicate-reads, find-query-breaks, find-tandem, findChimeras, findMissingMates, findTcovSnp, find_ends, fixfastq, fixfrg, fixlib, frg-umd-merge, frg2fasta, frg2fastq, frg2ta, gap-links, gc-content-plot, gccontent, gene_asm, genome-complexity, genome-complexity-fast, getFRCvalues, getN50, getlengths, goBambus2, grow-readbank, hash-overlap, insert-sizes, iterate, kmer-count, kmer-cov, kmer-cov-plot, kmers, ktrimfrg, library-histogram, list-linked-contigs, listGCContent, listReadPlacedStatus, listSingletonMates, listSurrogates, listcontigreads, load-overlaps, loadFeatures, make-consensus, make-consensus_poly, merge-contigs, message-count, message-extract, message-validate, minimus, minimus2, minimus2-blat, missing-reads, normalizeScaffold, nucmer2ovl, nucmerAnnotate, olapsFromContig, overlap-align, ovl-degr-dist, ovl2OVL, parsecasm, partitionBank, phd2afg, postCAqc, preTA, preassembleFrgs, printScaff, pullTArchive, pyrosim, qmer-filter, read-cov-plot, readinfo2cam, rearrangeSeqs, recallConsensus, renameReads, rerunMultiTest, resetFragLibrary, revFasta, revScaffold, runAmos, runMultiTest, runTA, runTest, running-cmp, samPileupConsensus, samtoafg, scaff2fasta, scaffoldRange2Ungapped, select-reads, show-ma-asm, shuffleBank, sidebyside, sim-cover-depth, sim-cover2, sim-shotgun, simple-overlap, simpleContigLoader, simplifyLibraries, singles, sort2, stats, summarizeMultiTest, suspiciousfeat2region, ta2ace, tab2ovls, tagsum-reduce, tandemCollapse, tarchive2amos, tarchive2ca, tigger, tiling2cam, toAmos, toAmos_new, toArachne, trace_comment, trace_comments, trace_convert, trace_scf_dump, trace_seq, translate-fasta, trimByOvl, trimends, trimfrg, untangle, updateBankPositions, updateClrRanges, updateDeltaClr, updateLibSizes, vecfix, verify-layout, jellyfish, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer
GITHUB quay.io/biocontainers/ampcombi shpc-registry automated BioContainers addition for ampcombi amp_database.py, amp_fasta.py, ampcombi, ampcombi.py, check_input.py, diamond_alignment.sh, diamond_makedb.sh, print_header.py, reformat_tables.py, diamond, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/amplicon_coverage_plot shpc-registry automated BioContainers addition for amplicon_coverage_plot amplicov, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/ampliconclassifier shpc-registry automated BioContainers addition for ampliconclassifier amplicon_classifier.py, amplicon_similarity.py, amplicons_intersecting_bed.py, feature_similarity.py, make_input.sh, make_results_table.py, softlink_images.py, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp
GITHUB quay.io/biocontainers/amplify shpc-registry automated BioContainers addition for amplify AMPlify, train_amplify, theano-cache, theano-nose, freeze_graph, mako-render, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, markdown_py
GITHUB quay.io/biocontainers/amptk shpc-registry automated BioContainers addition for amptk amptk, amptk_synthetic_mock.py, bold2utax.py, distro, pyfastx, biom, FastTree-2.1.10.c, vsearch, FastTreeMP, FastTree, fasttree, mafft-sparsecore.rb, einsi, fftns, fftnsi
GITHUB quay.io/biocontainers/amused shpc-registry automated BioContainers addition for amused AMUSED, AMUSED-KS, alignKMers, bundle, bundler, racc, racc2y, shuffleCodons.rb, shuffleCodonsAddMotifs.rb, y2racc, gdbm_dump, gdbm_load, gdbmtool, jemalloc-config, jeprof, jemalloc.sh, erb, gem, irb, rake
GITHUB quay.io/biocontainers/anadama2 shpc-registry automated BioContainers addition for anadama2 anadama2_aws_batch_task, ptangle, pweave, pweave-convert, pypublish, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run, iptest3, curve_keygen, iptest, ipython3, ipython, jupyter-trust
GITHUB quay.io/biocontainers/ananse shpc-registry automated BioContainers addition for ananse GenomeOntology.pl, HomerConfig.pm, HomerSVGLogo.pm, ProSampler, SIMA.pl, Statistics.pm, XXmotif, addData.pl, addDataHeader.pl, addGeneAnnotation.pl, addInternalData.pl, addOligos.pl, adjustPeakFile.pl, adjustRedunGroupFile.pl, analyzeChIP-Seq.pl, analyzeHiC, analyzeRNA.pl, analyzeRepeats.pl, ananse, annotateInteractions.pl, annotatePeaks.pl, annotateRelativePosition.pl, annotateTranscripts.pl, assignGeneWeights.pl, assignGenomeAnnotation, assignTSStoGene.pl, batchAnnotatePeaksHistogram.pl, batchFindMotifs.pl, batchFindMotifsGenome.pl, batchMakeHiCMatrix.pl, batchMakeMultiWigHub.pl, batchMakeTagDirectory.pl, batchParallel.pl, bed2DtoUCSCbed.pl, bed2pos.pl, bed2tag.pl, bedToGenePred, bigBedToBed, blat2gtf.pl, bridgeResult2Cytoscape.pl, changeNewLine.pl, checkPeakFile.pl, checkTagBias.pl, chopUpBackground.pl, chopUpPeakFile.pl, chopify.pl, cleanUpPeakFile.pl, cleanUpSequences.pl, cluster2bed.pl, cluster2bedgraph.pl, combineGO.pl, combineHubs.pl, combine_peaks, compareMotifs.pl, condenseBedGraph.pl, cons2fasta.pl, conservationAverage.pl, conservationPerLocus.pl, convertCoordinates.pl, convertIDs.pl, convertOrganismID.pl, coverage_table, dinamo, dreme-py3, dtc, duplicateCol.pl, eland2tags.pl, fasta-dinucleotide-shuffle-py3, fasta-hamming-enrich-py3, fasta-re-match, fasta2tab.pl, fastq2fasta.pl, filterListBy.pl, filterTADsAndCPs.pl, filterTADsAndLoops.pl, findGO.pl, findGOtxt.pl, findHiCCompartments.pl, findHiCDomains.pl, findHiCInteractionsByChr.pl, findKnownMotifs.pl, findMotifs.pl, findMotifsGenome.pl, findPeaks, findRedundantBLAT.pl, findTADsAndLoops.pl, findTADsAndLoopsFromRelMatrix, findTopMotifs.pl, findcsRNATSS.pl, flipPC1toMatch.pl, freq2group.pl, gadem, genePredToBed, genePredToGtf, genericConvertIDs.pl, genomeOntology, genomepy, getChrLengths.pl, getConservedRegions.pl, getDiffExpression.pl, getDifferentialBedGraph.pl, getDifferentialPeaks, getDifferentialPeaksReplicates.pl, getDistalPeaks.pl, getFocalPeaks.pl, getGWASoverlap.pl, getGenesInCategory.pl, getGenomeTilingPeaks, getHiCcorrDiff.pl, getHomerQCstats.pl, getLikelyAdapters.pl, getMappableRegions, getMappingStats.pl, getPartOfPromoter.pl, getPeakTags, getPos.pl, getRandomReads.pl, getSiteConservation.pl, getTopPeaks.pl, gff2pos.pl, gff3ToGenePred, gimme, go2cytoscape.pl, groupSequences.pl, gtfToGenePred, homer, homer2, homerTools, joinFiles.pl, lightning_predict, lightning_train, loadGenome.pl, loadPromoters.pl, makeBigBedMotifTrack.pl, makeBigWig.pl, makeBinaryFile.pl, makeHiCWashUfile.pl, makeMetaGeneProfile.pl, makeMultiWigHub.pl, makeTagDirectory, makeUCSCfile, map-fastq.pl, meme-chip_html_to_tsv, merge2Dbed.pl, mergeData.pl, mergePeaks, momo, motif2Jaspar.pl, motif2Logo.pl, parseGTF.pl, plasma_store_server, pos2bed.pl, prepForR.pl, preparseGenome.pl, profile2seq.pl, qseq2fastq.pl, randRemoveBackground.pl, randomizeGroupFile.pl, randomizeMotifs.pl, removeAccVersion.pl, removeBadSeq.pl, removeOutOfBoundsReads.pl, removePoorSeq.pl, removeRedundantPeaks.pl, renamePeaks.pl, resizePosFile.pl, revoppMotif.pl, rotateHiCmatrix.pl, runHiCpca.pl, sam2spliceJunc.pl, scanMotifGenomeWide.pl, scrambleFasta.pl, selectRepeatBg.pl, seq2profile.pl, subtractBedGraphs.pl, subtractBedGraphsDirectory.pl, tab2fasta.pl, tag2bed.pl, tag2pos.pl, tagDir2HiCsummary.pl, tagDir2bed.pl, tagDir2hicFile.pl, thrift, trawler, weeder2, xsltproc_lite, zipHomerResults.pl, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip
GITHUB quay.io/biocontainers/anarci shpc-registry automated BioContainers addition for anarci ANARCI, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat
GITHUB quay.io/biocontainers/ancestry_hmm-s shpc-registry automated BioContainers addition for ancestry_hmm-s ahmm-s
GITHUB quay.io/biocontainers/anchorwave shpc-registry automated BioContainers addition for anchorwave anchorwave, anchorwave_avx2, anchorwave_avx512, anchorwave_sse2, anchorwave_sse4.1, atoiindex, bulk-counts, cmetindex, configure, cpuid, dbsnp_iit, ensembl_genes, fa_coords, get-genome, gff3_genes, gff3_introns, gff3_splicesites, gmap.nosimd, gmap.sse42, gmap_build, gmap_cat, gmap_process, gmapindex, gmapl, gmapl.nosimd, gmapl.sse42, gsnap, gsnap.nosimd, gsnap.sse42, gsnapl, gsnapl.nosimd, gsnapl.sse42, gtf_genes, gtf_introns, gtf_splicesites, gtf_transcript_splicesites, gvf_iit, iit_dump, iit_get, iit_store, indexdb_cat, md_coords, psl_genes, psl_introns, psl_splicesites, sam_sort, sc-counts, snpindex, trindex, vcf_iit, velocity-counts, gmap, sdust, paftools.js, minimap2, k8, perl5.32.1, streamzip
GITHUB quay.io/biocontainers/andi shpc-registry automated BioContainers addition for andi andi, gsl-randist
GITHUB quay.io/biocontainers/anglerfish shpc-registry automated BioContainers addition for anglerfish anglerfish, sdust, paftools.js, minimap2, k8, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/angsd shpc-registry automated BioContainers addition for angsd NGSadmix, angsd, contamination, contamination2, haploToPlink, ibs, msHOT2glf, msToGlf, ngsPSMC, printIcounts, realSFS, scounts, smartCount, splitgl, supersim, thetaStat, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/anise_basil shpc-registry automated BioContainers addition for anise_basil anise, basil, filter_basil.py, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv
GITHUB quay.io/biocontainers/aniso8601 shpc-registry automated BioContainers addition for aniso8601 easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5
GITHUB quay.io/biocontainers/anndata shpc-registry automated BioContainers addition for anndata natsort, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, h5clear
GITHUB quay.io/biocontainers/anndata2ri shpc-registry automated BioContainers addition for anndata2ri dunamai, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, natsort, mirror_server, mirror_server_stop
GITHUB quay.io/biocontainers/ansible shpc-registry automated BioContainers addition for ansible ansible, ansible-doc, ansible-galaxy, ansible-playbook, ansible-pull, ansible-vault, smtpd.pyc, easy_install-2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5
GITHUB quay.io/biocontainers/ant shpc-registry automated BioContainers addition for ant ant, ant.bat, ant.cmd, antRun, antRun.bat, antRun.pl, antenv.cmd, complete-ant-cmd.pl, envset.cmd, lcp.bat, runant.pl, runant.py, runrc.cmd, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/antarna shpc-registry automated BioContainers addition for antarna antarna.py, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex
GITHUB quay.io/biocontainers/antismash-lite shpc-registry automated BioContainers addition for antismash-lite antismash, download-antismash-databases, hmmalign2, hmmbuild2, hmmc2, hmmcalibrate2, hmmconvert2, hmmemit2, hmmerfm-exactmatch, hmmfetch2, hmmindex2, hmmpfam2, hmmsearch2, less2scss, pyscss, xsltproc_lite, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip
GITHUB quay.io/biocontainers/antismash shpc-registry automated BioContainers addition for antismash antismash, download-antismash-databases, hmmalign2, hmmbuild2, hmmc2, hmmcalibrate2, hmmconvert2, hmmemit2, hmmerfm-exactmatch, hmmfetch2, hmmindex2, hmmpfam2, hmmsearch2, less2scss, pyscss, xsltproc_lite, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip
GITHUB quay.io/biocontainers/anvio-minimal shpc-registry automated BioContainers addition for anvio-minimal anvi-analyze-synteny, anvi-cluster-contigs, anvi-compute-ani, anvi-compute-completeness, anvi-compute-functional-enrichment, anvi-compute-functional-enrichment-across-genomes, anvi-compute-functional-enrichment-in-pan, anvi-compute-gene-cluster-homogeneity, anvi-compute-genome-similarity, anvi-compute-metabolic-enrichment, anvi-db-info, anvi-delete-collection, anvi-delete-functions, anvi-delete-hmms, anvi-delete-misc-data, anvi-delete-state, anvi-dereplicate-genomes, anvi-display-contigs-stats, anvi-display-functions, anvi-display-metabolism, anvi-display-pan, anvi-display-structure, anvi-estimate-genome-completeness, anvi-estimate-genome-taxonomy, anvi-estimate-metabolism, anvi-estimate-scg-taxonomy, anvi-estimate-trna-taxonomy, anvi-experimental-organization, anvi-export-collection, anvi-export-contigs, anvi-export-functions, anvi-export-gene-calls, anvi-export-gene-coverage-and-detection, anvi-export-items-order, anvi-export-locus, anvi-export-misc-data, anvi-export-splits-and-coverages, anvi-export-splits-taxonomy, anvi-export-state, anvi-export-structures, anvi-export-table, anvi-gen-contigs-database, anvi-gen-fixation-index-matrix, anvi-gen-gene-consensus-sequences, anvi-gen-gene-level-stats-databases, anvi-gen-genomes-storage, anvi-gen-network, anvi-gen-phylogenomic-tree, anvi-gen-structure-database, anvi-gen-variability-matrix, anvi-gen-variability-network, anvi-gen-variability-profile, anvi-get-aa-counts, anvi-get-codon-frequencies, anvi-get-pn-ps-ratio, anvi-get-sequences-for-gene-calls, anvi-get-sequences-for-gene-clusters, anvi-get-sequences-for-hmm-hits, anvi-get-short-reads-from-bam, anvi-get-short-reads-mapping-to-a-gene, anvi-get-split-coverages, anvi-get-tlen-dist-from-bam, anvi-help, anvi-import-collection, anvi-import-functions, anvi-import-items-order, anvi-import-misc-data, anvi-import-state, anvi-import-taxonomy-for-genes, anvi-import-taxonomy-for-layers, anvi-init-bam, anvi-inspect, anvi-interactive, anvi-matrix-to-newick, anvi-mcg-classifier, anvi-merge, anvi-merge-bins, anvi-merge-trnaseq, anvi-meta-pan-genome, anvi-migrate, anvi-oligotype-linkmers, anvi-pan-genome, anvi-plot-trnaseq, anvi-profile, anvi-profile-blitz, anvi-push, anvi-refine, anvi-rename-bins, anvi-report-inversions, anvi-report-linkmers, anvi-run-hmms, anvi-run-interacdome, anvi-run-kegg-kofams, anvi-run-ncbi-cogs, anvi-run-pfams, anvi-run-scg-taxonomy, anvi-run-trna-taxonomy, anvi-run-workflow, anvi-scan-trnas, anvi-script-add-default-collection, anvi-script-augustus-output-to-external-gene-calls, anvi-script-checkm-tree-to-interactive, anvi-script-compute-ani-for-fasta, anvi-script-compute-bayesian-pan-core, anvi-script-enrichment-stats, anvi-script-estimate-genome-size, anvi-script-filter-fasta-by-blast, anvi-script-filter-hmm-hits-table, anvi-script-fix-homopolymer-indels, anvi-script-gen-CPR-classifier, anvi-script-gen-distribution-of-genes-in-a-bin, anvi-script-gen-functions-per-group-stats-output, anvi-script-gen-genomes-file, anvi-script-gen-help-pages, anvi-script-gen-hmm-hits-matrix-across-genomes, anvi-script-gen-programs-network, anvi-script-gen-programs-vignette, anvi-script-gen-pseudo-paired-reads-from-fastq, anvi-script-gen-scg-domain-classifier, anvi-script-gen-short-reads, anvi-script-gen_stats_for_single_copy_genes.R, anvi-script-gen_stats_for_single_copy_genes.py, anvi-script-gen_stats_for_single_copy_genes.sh, anvi-script-get-collection-info, anvi-script-get-coverage-from-bam, anvi-script-get-hmm-hits-per-gene-call, anvi-script-get-primer-matches, anvi-script-merge-collections, anvi-script-permute-trnaseq-seeds, anvi-script-pfam-accessions-to-hmms-directory, anvi-script-predict-CPR-genomes, anvi-script-process-genbank, anvi-script-process-genbank-metadata, anvi-script-reformat-fasta, anvi-script-run-eggnog-mapper, anvi-script-snvs-to-interactive, anvi-script-tabulate, anvi-script-transpose-matrix, anvi-script-variability-to-vcf, anvi-script-visualize-split-coverages, anvi-search-functions, anvi-search-palindromes, anvi-search-sequence-motifs, anvi-self-test, anvi-setup-interacdome, anvi-setup-kegg-kofams, anvi-setup-ncbi-cogs, anvi-setup-pdb-database, anvi-setup-pfams, anvi-setup-scg-taxonomy, anvi-setup-trna-taxonomy, anvi-show-collections-and-bins, anvi-show-misc-data, anvi-split, anvi-summarize, anvi-summarize-blitz, anvi-tabulate-trnaseq, anvi-trnaseq, anvi-update-db-description, anvi-update-structure-database, anvi-upgrade, average_nucleotide_identity.py, bottle.py, delta_filter_wrapper.py, django-admin, django-admin.py, genbank_get_genomes_by_taxon.py, iu-compute-qual-dicts-from-fastq, iu-deinterleave-fastq, iu-demultiplex, iu-fasta-to-fastq, iu-fastq-to-fasta, iu-filter-merged-reads, iu-filter-quality-bokulich, iu-filter-quality-minoche, iu-gen-configs, iu-gen-matching-fastq-files, iu-interleave-fastq, iu-merge-pairs, iu-remove-ids-from-fastq, iu-subsample-fastq, iu-trim-V6-primers, iu-trim-fastq, iu-visualize-mismatch-distribution, iu-visualize-plot-dicts, iu-visualize-qual-dicts, sqlformat, filter-table, spdi2prod, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb
GITHUB quay.io/biocontainers/anvio shpc-registry automated BioContainers addition for anvio EukHighConfidenceFilter, anvi-analyze-synteny, anvi-cluster-contigs, anvi-compute-ani, anvi-compute-completeness, anvi-compute-gene-cluster-homogeneity, anvi-compute-genome-similarity, anvi-db-info, anvi-delete-collection, anvi-delete-hmms, anvi-delete-misc-data, anvi-delete-state, anvi-dereplicate-genomes, anvi-display-contigs-stats, anvi-display-pan, anvi-display-structure, anvi-estimate-genome-completeness, anvi-estimate-genome-taxonomy, anvi-estimate-scg-taxonomy, anvi-experimental-organization, anvi-export-collection, anvi-export-contigs, anvi-export-functions, anvi-export-gene-calls, anvi-export-gene-coverage-and-detection, anvi-export-items-order, anvi-export-locus, anvi-export-misc-data, anvi-export-splits-and-coverages, anvi-export-splits-taxonomy, anvi-export-state, anvi-export-structures, anvi-export-table, anvi-gen-contigs-database, anvi-gen-fixation-index-matrix, anvi-gen-gene-consensus-sequences, anvi-gen-gene-level-stats-databases, anvi-gen-genomes-storage, anvi-gen-network, anvi-gen-phylogenomic-tree, anvi-gen-structure-database, anvi-gen-variability-matrix, anvi-gen-variability-network, anvi-gen-variability-profile, anvi-get-aa-counts, anvi-get-codon-frequencies, anvi-get-enriched-functions-per-pan-group, anvi-get-sequences-for-gene-calls, anvi-get-sequences-for-gene-clusters, anvi-get-sequences-for-hmm-hits, anvi-get-short-reads-from-bam, anvi-get-short-reads-mapping-to-a-gene, anvi-get-split-coverages, anvi-help, anvi-import-collection, anvi-import-functions, anvi-import-items-order, anvi-import-misc-data, anvi-import-state, anvi-import-taxonomy-for-genes, anvi-import-taxonomy-for-layers, anvi-init-bam, anvi-inspect, anvi-interactive, anvi-matrix-to-newick, anvi-mcg-classifier, anvi-merge, anvi-merge-bins, anvi-meta-pan-genome, anvi-migrate, anvi-oligotype-linkmers, anvi-pan-genome, anvi-profile, anvi-push, anvi-refine, anvi-rename-bins, anvi-report-linkmers, anvi-run-hmms, anvi-run-ncbi-cogs, anvi-run-pfams, anvi-run-scg-taxonomy, anvi-run-workflow, anvi-scan-trnas, anvi-script-FASTA-to-contigs-db, anvi-script-add-default-collection, anvi-script-calculate-pn-ps-ratio, anvi-script-checkm-tree-to-interactive, anvi-script-compute-ani-for-fasta, anvi-script-estimate-genome-size, anvi-script-filter-fasta-by-blast, anvi-script-gen-CPR-classifier, anvi-script-gen-distribution-of-genes-in-a-bin, anvi-script-gen-hmm-hits-matrix-across-genomes, anvi-script-gen-programs-network, anvi-script-gen-programs-vignette, anvi-script-gen-scg-domain-classifier, anvi-script-gen-short-reads, anvi-script-gen_stats_for_single_copy_genes.R, anvi-script-gen_stats_for_single_copy_genes.py, anvi-script-gen_stats_for_single_copy_genes.sh, anvi-script-get-collection-info, anvi-script-get-coverage-from-bam, anvi-script-get-hmm-hits-per-gene-call, anvi-script-get-short-reads-matching-something, anvi-script-merge-collections, anvi-script-predict-CPR-genomes, anvi-script-process-genbank, anvi-script-process-genbank-metadata, anvi-script-reformat-fasta, anvi-script-run-eggnog-mapper, anvi-script-run-functional-enrichment-stats, anvi-script-snvs-to-interactive, anvi-script-transpose-matrix, anvi-script-variability-to-vcf, anvi-script-visualize-split-coverages, anvi-search-functions, anvi-self-test, anvi-setup-ncbi-cogs, anvi-setup-pdb-database, anvi-setup-pfams, anvi-setup-scg-databases, anvi-show-collections-and-bins, anvi-show-misc-data, anvi-split, anvi-summarize, anvi-threshold-taxonomy, anvi-update-db-description, anvi-update-structure-database, anvi-upgrade, average_nucleotide_identity.py, bottle.py, calc-prorate, centrifuge, centrifuge-BuildSharedSequence.pl, centrifuge-RemoveEmptySequence.pl, centrifuge-RemoveN.pl, centrifuge-build, centrifuge-build-bin, centrifuge-class, centrifuge-compress.pl, centrifuge-download, centrifuge-inspect, centrifuge-inspect-bin, centrifuge-kreport, centrifuge-sort-nt.pl, centrifuge_evaluate.py, centrifuge_simulate_reads.py, cheroot, cherryd, covels-SE, coves-SE, delta_filter_wrapper.py, django-admin, django-admin.py, eufindtRNA, fasta2gsi, genbank_get_genomes_by_taxon.py, iu-compute-qual-dicts-from-fastq, iu-deinterleave-fastq, iu-demultiplex, iu-fasta-to-fastq, iu-fastq-to-fasta, iu-filter-merged-reads, iu-filter-quality-bokulich, iu-filter-quality-minoche, iu-gen-configs, iu-gen-matching-fastq-files, iu-interleave-fastq, iu-merge-pairs, iu-remove-ids-from-fastq, iu-subsample-fastq, iu-trim-V6-primers, iu-trim-fastq, iu-visualize-mismatch-distribution, iu-visualize-plot-dicts, iu-visualize-qual-dicts, sqlformat, sstofa, tRNAscan-SE, tRNAscan-SE.conf, trnascan-1.4, readal, statal, trimal, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, megahit, megahit_toolkit, bl2seq, blastall
GITHUB quay.io/biocontainers/any2fasta shpc-registry automated BioContainers addition for any2fasta any2fasta, perl5.32.0, streamzip
GITHUB quay.io/biocontainers/aodp shpc-registry automated BioContainers addition for aodp aodp, x86_64-conda_cos7-linux-gnu-ld, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches
GITHUB quay.io/biocontainers/aplanat shpc-registry automated BioContainers addition for aplanat aplanat, font-awesome-to-png, icon-font-to-png, bokeh, markdown_py, f2py3.10, chardetect, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10
GITHUB quay.io/biocontainers/apoc shpc-registry automated BioContainers addition for apoc apoc
GITHUB quay.io/biocontainers/apollo shpc-registry automated BioContainers addition for apollo arrow, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py
GITHUB quay.io/biocontainers/appspam shpc-registry automated BioContainers addition for appspam appspam
GITHUB quay.io/biocontainers/apt-probeset-summarize shpc-registry automated BioContainers addition for apt-probeset-summarize apt-probeset-summarize
GITHUB quay.io/biocontainers/aptardi shpc-registry automated BioContainers addition for aptardi aptardi, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, pyrsa-decrypt, pyrsa-encrypt
GITHUB quay.io/biocontainers/aquamis shpc-registry automated BioContainers addition for aquamis aquamis, aquamis_setup.sh, bracken, bracken-build, combine_bracken_outputs.py, confindr, confindr.py, confindr_create_db, confindr_database_setup, create_sampleSheet.sh, est_abundance.py, filter_json.py, generate_kmer_distribution.py, genson, helper_functions.py, icarus.py, kma, kma_index, kma_shm, kma_update, kmer2read_distr, kraken2, kraken2-build, kraken2-inspect, lighter, metaquast, metaquast.py, mlst, parse_json.py, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, shovill, skesa, taxonkit, write_QC_report.Rmd, write_report.Rmd, kmutate.sh, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, rsync-ssl, runhmm.sh, circos, circos.exe, compile.bat, compile.make
GITHUB quay.io/biocontainers/aquila shpc-registry automated BioContainers addition for aquila Aquila_assembly_based_variants_call, Aquila_clean, Aquila_phasing_all_variants, Aquila_step0_sortbam, Aquila_step0_sortbam_multilibs, Aquila_step1, Aquila_step1_multilibs, Aquila_step2, paftools.js, minimap2, k8, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m
GITHUB quay.io/biocontainers/aquila_stlfr shpc-registry automated BioContainers addition for aquila_stlfr Aquila_stLFR_assembly_based_variants_call, Aquila_stLFR_clean, Aquila_stLFR_fastq_preprocess, Aquila_stLFR_phasing_all_variants, Aquila_stLFR_step1, Aquila_stLFR_step2, Aquila_step0_sortbam_hybrid, Aquila_step1_hybrid, paftools.js, minimap2, k8, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m
GITHUB quay.io/biocontainers/aquila_sv shpc-registry automated BioContainers addition for aquila_sv AquilaSV_step1, AquilaSV_step2, AquilaSV_step3, sdust, paftools.js, minimap2, k8, fasta-sanitize.pl, plot-ampliconstats, f2py3.9, ace2sam, blast2sam.pl, bowtie2sam.pl
GITHUB quay.io/biocontainers/aquila_umap shpc-registry automated BioContainers addition for aquila_umap aquila_umap, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, 2to3-3.7
GITHUB quay.io/biocontainers/aquilasv shpc-registry automated BioContainers addition for aquilasv AquilaSV_step1, AquilaSV_step2, AquilaSV_step3, cds-mapping-stats, cds-subgraphs, mag-improve, spades-convert-bin-to-fasta, spades-gsimplifier, spades-kmer-estimating, spades-read-filter, spaligner, spades-bwa, spades-core
GITHUB quay.io/biocontainers/aragorn shpc-registry automated BioContainers addition for aragorn aragorn
GITHUB quay.io/biocontainers/arb-bio-devel shpc-registry automated BioContainers addition for arb-bio-devel DrawGram.jar, DrawTree.jar, arb, arb_2_ascii, arb_2_bin, arb_a2ps, arb_bootstrap, arb_clean, arb_consensus_tree, arb_convert_aln, arb_db_server, arb_dist, arb_dnapars, arb_dnarates, arb_echo, arb_edit4, arb_export_rates, arb_export_tree, arb_fastdnaml, arb_flush_mem, arb_gene_probe, arb_help2xml, arb_help_useredit.sh, arb_ign, arb_installubuntu4arb.sh, arb_launcher, arb_ludwig, arb_macsetup, arb_message, arb_naligner, arb_name_server, arb_nexus2newick.awk, arb_notify, arb_ntree, arb_panic, arb_pars, arb_phylo, arb_phyml, arb_primer, arb_probe, arb_proml, arb_proto_2_xsub, arb_protpars, arb_pt_server, arb_raxml, arb_read_tree, arb_readlink, arb_readseq, arb_remote, arb_repair, arb_replace, arb_rexec, arb_rnacma, arb_sed, arb_sleep, arb_textedit, arb_textprint, arb_trace, arb_treegen, arb_wait, arb_wetc, arb_who, clique, consense, contml, contrast, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, dollop, dolmove, dolpenny, drawgram, drawgram_gui, drawtree, drawtree_gui, fig2dev, fig2ps2tex, fitch, gendist, kitsch, mb, mb-mpi, mix, move, mwm, neighbor, ompi-dvm, ompi-ps, ompi-top, orte-dvm, orte-ps, orte-top, pars, penny, phylip, phyml, phyml-mpi, pic2tpic, proml, promlk, protdist, protpars, prun, restdist, restml, retree, seqboot, transfig, treedist, uil, xfig, xmbind, gnuplot, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, FastTree-2.1.10.c, oshCC, oshc++
GITHUB quay.io/biocontainers/arb-bio-tools shpc-registry automated BioContainers addition for arb-bio-tools arb_2_ascii, arb_2_bin, arb_a2ps, arb_consensus_tree, arb_convert_aln, arb_db_server, arb_dnarates, arb_export_rates, arb_export_tree, arb_flush_mem, arb_gene_probe, arb_help2xml, arb_message, arb_naligner, arb_name_server, arb_notify, arb_primer, arb_probe, arb_proto_2_xsub, arb_pt_server, arb_read_tree, arb_readseq, arb_replace, arb_rnacma, arb_treegen, gio-launch-desktop
GITHUB quay.io/biocontainers/arb-bio shpc-registry automated BioContainers addition for arb-bio DrawGram.jar, DrawTree.jar, arb, arb_2_ascii, arb_2_bin, arb_a2ps, arb_bootstrap, arb_clean, arb_consensus_tree, arb_convert_aln, arb_db_server, arb_dist, arb_dnapars, arb_dnarates, arb_echo, arb_edit4, arb_export_rates, arb_export_tree, arb_fastdnaml, arb_flush_mem, arb_gene_probe, arb_help2xml, arb_help_useredit.sh, arb_ign, arb_installubuntu4arb.sh, arb_launcher, arb_ludwig, arb_macsetup, arb_message, arb_naligner, arb_name_server, arb_nexus2newick.awk, arb_notify, arb_ntree, arb_panic, arb_pars, arb_phylo, arb_phyml, arb_primer, arb_probe, arb_proml, arb_proto_2_xsub, arb_protpars, arb_pt_server, arb_raxml, arb_read_tree, arb_readlink, arb_readseq, arb_remote, arb_repair, arb_replace, arb_rexec, arb_rnacma, arb_sed, arb_sleep, arb_textedit, arb_textprint, arb_trace, arb_treegen, arb_wait, arb_wetc, arb_who, clique, consense, contml, contrast, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, dollop, dolmove, dolpenny, drawgram, drawgram_gui, drawtree, drawtree_gui, fig2dev, fig2ps2tex, fitch, gendist, kitsch, mb, mb-mpi, mix, move, mwm, neighbor, ompi-dvm, ompi-ps, ompi-top, orte-dvm, orte-ps, orte-top, pars, penny, phylip, phyml, phyml-mpi, pic2tpic, proml, promlk, protdist, protpars, prun, restdist, restml, retree, seqboot, transfig, treedist, uil, xfig, xmbind, gnuplot, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, FastTree-2.1.10.c, oshCC, oshc++
GITHUB quay.io/biocontainers/arboreto shpc-registry automated BioContainers addition for arboreto dask-scheduler, dask-ssh, dask-worker, bokeh, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/arcas-hla shpc-registry automated BioContainers addition for arcas-hla arcasHLA, git-lfs, kallisto, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown
GITHUB quay.io/biocontainers/archer shpc-registry automated BioContainers addition for archer archer
GITHUB quay.io/biocontainers/arcs shpc-registry automated BioContainers addition for arcs arcs, arcs-make, long-to-linked-pe
GITHUB quay.io/biocontainers/arem shpc-registry automated BioContainers addition for arem arem, elandexport2bed, elandmulti2bed, elandresult2bed, wignorm, sam2bed, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/argh shpc-registry automated BioContainers addition for argh easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5
GITHUB quay.io/biocontainers/argparse2tool shpc-registry automated BioContainers addition for argparse2tool argparse2tool, argparse2tool_check_path, futurize, pasteurize, xslt-config, xsltproc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/argutils shpc-registry automated BioContainers addition for argutils 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/aria2 shpc-registry automated BioContainers addition for aria2 aria2c
GITHUB quay.io/biocontainers/ariba shpc-registry automated BioContainers addition for ariba ariba, bwa-spades, corrector, dipspades, dipspades.py, hammer, ionhammer, scaffold_correction, spades, fastaq, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div, cd-hit-div.pl, cd-hit-est-2d, cd-hit-para.pl, clstr2tree.pl
GITHUB quay.io/biocontainers/array-as-vcf shpc-registry automated BioContainers addition for array-as-vcf aav, array-as-vcf, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/arriba shpc-registry automated BioContainers addition for arriba arriba, convert_fusions_to_vcf.sh, draw_fusions.R, extract_fusion-supporting_alignments.sh, quantify_virus_expression.sh, run_arriba.sh, run_arriba_on_prealigned_bam.sh, STAR, STARlong, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long
GITHUB quay.io/biocontainers/arrow shpc-registry automated BioContainers addition for arrow easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5
GITHUB quay.io/biocontainers/art shpc-registry automated BioContainers addition for art art_454, art_SOLiD, art_illumina
GITHUB quay.io/biocontainers/artemis shpc-registry automated BioContainers addition for artemis act, art, bamview, dnaplotter, writedb_entry, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/artic-porechop shpc-registry automated BioContainers addition for artic-porechop porechop, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv
GITHUB quay.io/biocontainers/artic-tools shpc-registry automated BioContainers addition for artic-tools artic-tools, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/artic shpc-registry automated BioContainers addition for artic align_trim, align_trim_n, artic, artic-tools, artic_fasta_header, artic_get_stats, artic_make_depth_mask, artic_mask, artic_vcf_filter, artic_vcf_merge, check_compression, compress_fast5, demux_fast5, fast5_subset, hdf2tf.py, longshot, margin_cons, margin_cons_medaka, medaka, medaka_consensus, medaka_counts, medaka_data_path, medaka_haploid_variant, medaka_version_report, mini_align, multi_to_single_fast5, nanopolish, nanopolish_makerange.py, nanopolish_merge.py, porechop, rich-click, single_to_multi_fast5, vcfextract, whatshap, multiqc, minimap2.py, racon, rampler, racon_wrapper, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin
GITHUB quay.io/biocontainers/arvados-cli shpc-registry automated BioContainers addition for arvados-cli arv, arv-crunch-job, arv-run-pipeline-instance, arv-tag, google-api, launchy, erb, gem, irb, rake, rdoc, ri, ruby, easy_install-3.5, 2to3-3.5, idle3.5
GITHUB quay.io/biocontainers/arvados-cwl-runner shpc-registry automated BioContainers addition for arvados-cwl-runner arv-copy, arv-federation-migrate, arv-get, arv-keepdocker, arv-ls, arv-migrate-docker19, arv-normalize, arv-put, arv-ws, arvados-cwl-runner, bagit.py, cwl-runner, prov-compare, prov-convert, cwltool, schema-salad-doc, schema-salad-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, doesitcache, coloredlogs
GITHUB quay.io/biocontainers/arvados-python-client shpc-registry automated BioContainers addition for arvados-python-client arv-copy, arv-federation-migrate, arv-get, arv-keepdocker, arv-ls, arv-migrate-docker19, arv-normalize, arv-put, arv-ws, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, futurize, pasteurize, 2to3-3.8, idle3.8
GITHUB quay.io/biocontainers/ascat shpc-registry automated BioContainers addition for ascat
GITHUB quay.io/biocontainers/asciigenome shpc-registry automated BioContainers addition for asciigenome ASCIIGenome, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/askocli shpc-registry automated BioContainers addition for askocli askocli, chardetect, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/asn2gb shpc-registry automated BioContainers addition for asn2gb asn2gb, idn
GITHUB quay.io/biocontainers/asqcan shpc-registry automated BioContainers addition for asqcan asqcan, blobtools, blobtools-build_nodesdb, icarus.py, metaquast, metaquast.py, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, circos, circos.exe, compile.bat, compile.make, gddiag, glimmerhmm, glimmhmm.pl, list.modules, test.modules, trainGlimmerHMM
GITHUB quay.io/biocontainers/assemblerflow shpc-registry automated BioContainers addition for assemblerflow assemblerflow, nextflow, nextflow.bak, giffilter, gifsponge, gifecho, gifinto, basenc, b2sum, base32, base64, basename, cat
GITHUB quay.io/biocontainers/assembly-scan shpc-registry automated BioContainers addition for assembly-scan assembly-scan, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/assembly-stats shpc-registry automated BioContainers addition for assembly-stats assembly-stats
GITHUB quay.io/biocontainers/assemblytics shpc-registry automated BioContainers addition for assemblytics Assemblytics, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot
GITHUB quay.io/biocontainers/astalavista shpc-registry automated BioContainers addition for astalavista astalavista, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/astropy shpc-registry automated BioContainers addition for astropy fits2bitmap, fitscheck, fitsdiff, fitsheader, fitsinfo, samp_hub, showtable, volint, wcslint, py.test, pytest, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7
GITHUB quay.io/biocontainers/atactk shpc-registry automated BioContainers addition for atactk make_cut_matrix, make_midpoint_matrix, measure_features, measure_signal, plot_aggregate_cut_matrix.R, plot_aggregate_midpoint_matrix.R, plot_signal.R, trim_adapters, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, x86_64-conda-linux-gnu-gfortran.bin, pyvenv
GITHUB quay.io/biocontainers/ataqv shpc-registry automated BioContainers addition for ataqv ataqv, mkarv, srvarv, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown
GITHUB quay.io/biocontainers/athena_meta shpc-registry automated BioContainers addition for athena_meta Makefile, Makefile.am, Makefile.in, athena-meta, bazel-scan.py, fa2fq, fa2fq.o, filter_blat, filter_blat.o, filter_contigs, filter_contigs.o, filterfa, filterfa.o, flye, flye-assemble, flye-minimap2, flye-polish, flye-repeat, fq2fa, fq2fa.o, idba, idba.o, idba_hybrid, idba_hybrid.o, idba_subasm, idba_subasm.o, idba_tran, idba_tran.o, idba_tran_test, idba_tran_test.o, idba_ud, idba_ud.o, ipcluster, ipcontroller, ipengine, iptest2, ipython2, parallel_blat, parallel_blat.o, parallel_rna_blat, parallel_rna_blat.o, print_graph, print_graph.o, raw_n50, raw_n50.o, run-unittest.py, sample_reads, sample_reads.o, scaffold, scaffold.o, scan.py, shuffle_reads, shuffle_reads.o, sim_reads, sim_reads.o, sim_reads_tran, sim_reads_tran.o, sort_psl, sort_psl.o, sort_reads, sort_reads.o, split_fa, split_fa.o, split_fq, split_fq.o, split_scaffold, split_scaffold.o, test.o, validate_blat, validate_blat_parallel, validate_blat_parallel_local, validate_blat_parallel_rna, validate_component, validate_component.o, validate_contigs_blat, validate_contigs_blat.o, validate_contigs_mummer, validate_contigs_mummer.o, validate_mummer, validate_reads_blat, validate_reads_blat.o, validate_rna, validate_rna.o, jupyter-kernel, jupyter-kernelspec, jupyter-run, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py
GITHUB quay.io/biocontainers/atlas-data-import shpc-registry automated BioContainers addition for atlas-data-import data_import_post_install_tests.bats, data_import_post_install_tests.sh, get_experiment_data.R, import_classification_data.R, metadata_conda_debug.yaml, build_env_setup.sh, conda_build.sh, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/atlas-fastq-provider shpc-registry automated BioContainers addition for atlas-fastq-provider abi-dump.2.11.0, abi-load, abi-load.2, abi-load.2.11.0, align-cache.2.11.0, align-info.2.11.0, atlas-fastq-provider-config.sh, atlas-fastq-provider-functions.sh, atlas-fastq-provider-post-install-tests.sh, bam-load.2.11.0, bam2fastq, bam_add_tags, bam_annotate.sh, bam_umi_count, bash, bashbug, cache-mgr.2.11.0, ccextract, ccextract.2, ccextract.2.11.0, cg-load.2.11.0, deinterleave_fastq.sh, fasterq-dump-orig.2.11.0, fasterq-dump.2.11.0, fastq-dump-orig.2.11.0, fastq-dump.2.11.0, fastq-load, fastq-load.2, fastq-load.2.11.0, fastq2bam, fastq_filter_n, fastq_filterpair, fastq_info, fastq_not_empty, fastq_num_reads, fastq_pre_barcodes, fastq_split_interleaved, fastq_tests, fastq_trim_poly_at, fastq_truncate, fastq_validator.sh, fetchEnaLibraryFastqs.sh, fetchFastq.sh, helicos-load, helicos-load.2, helicos-load.2.11.0, illumina-dump.2.11.0, illumina-load, illumina-load.2, illumina-load.2.11.0, initialiseEnaProbe.sh, kar.2.11.0, kdbmeta.2.11.0, kget.2.11.0, latf-load.2.11.0, md5cp.2.11.0, pacbio-load, pacbio-load.2, pacbio-load.2.11.0, pacbio-loadxml, pacbio-loadxml.2, pacbio-loadxml.2.11.0, prefetch-orig.2.11.0, prefetch.2.11.0, rcexplain.2.11.0, read-filter-redact.2.11.0, sam-dump-orig.2.11.0, sam-dump.2.11.0, sff-dump.2.11.0, sff-load, sff-load.2, sff-load.2.11.0, sra-pileup-orig.2.11.0, sra-pileup.2.11.0, sra-sort-cg.2.11.0, sra-sort.2.11.0, sra-stat.2.11.0, srapath-orig.2.11.0, srapath.2.11.0, sratools.2.11.0, srf-load, srf-load.2, srf-load.2.11.0, test-sra.2.11.0, validateUri.sh, vdb-config.2.11.0, vdb-copy.2.11.0, vdb-decrypt.2.11.0, vdb-diff.2.11.0, vdb-dump-orig.2.11.0, vdb-dump.2.11.0, vdb-encrypt.2.11.0, vdb-lock.2.11.0, vdb-passwd.2.11.0, vdb-unlock.2.11.0, vdb-validate.2.11.0, align-cache.2, md5cp.2, read-filter-redact.2, sra-sort-cg.2, vdb-diff.2, align-cache, fasterq-dump-orig, fastq-dump-orig, md5cp, prefetch-orig
GITHUB quay.io/biocontainers/atlas-gene-annotation-manipulation shpc-registry automated BioContainers addition for atlas-gene-annotation-manipulation gtf2featureAnnotation.R
GITHUB quay.io/biocontainers/atlas-metadata-validator shpc-registry automated BioContainers addition for atlas-metadata-validator atlas_validation.py, chardetect, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/atlas shpc-registry automated BioContainers addition for atlas atlas
GITHUB quay.io/biocontainers/atropos shpc-registry automated BioContainers addition for atropos atropos, tqdm, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/augur shpc-registry automated BioContainers addition for augur augur, dsdp5, treetime, vcftools, iqtree, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, FastTree-2.1.10.c, FastTreeMP, cmpfillin
GITHUB quay.io/biocontainers/augustus shpc-registry automated BioContainers addition for augustus PF00225_full.blocks.txt, PF00225_seed.blocks.txt, SplicedAlignment.pm, aa2nonred.pl, add_name_to_gff3.pl, aln2wig, augustify.py, augustus, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, bam2wig, bamToWig.py, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, cdbfasta, cdbyank, cegma2gff.pl, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, compare_masking.pl, compileSpliceCands, computeFlankingRegion.pl, createAugustusJoblist.pl, del_from_prfl.pl, evalCGP.pl, eval_dualdecomp.pl, eval_multi_gtf.pl, executeTestCGP.py, exonerate2hints.pl, exoniphyDb2hints.pl, extractAnno.py, extractTranscriptEnds.pl, filter-ppx.pl, filterGenes.pl, filterGenesIn.pl, filterGenesIn_mRNAname.pl, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, findGffNamesInFasta.pl, findRepetitiveProtSeqs.py, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, getAnnoFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, getSeq, get_loci_from_gb.pl, gff2gbSmallDNA.pl, gff2ps_mycustom, gffGetmRNA.pl, gp2othergp.pl, gtf2aa.pl, gtf2gff.pl, gth2gtf.pl, hal2maf_split.pl, helpMod.pm, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, load2sqlitedb, lp_solve, maf2conswig.pl, makeMatchLists.pl, makeUtrTrainingSet.pl, maskNregions.pl, merge_masking.pl, moveParameters.pl, msa2prfl.pl, new_species.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, peptides2alternatives.pl, peptides2hints.pl, phastconsDB2hints.pl, polyA2hints.pl, pp_simScore, prints2prfl.pl, pslMap.pl, randomSplit.pl, rename_species.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, samMap.pl, scipiogff2gff.pl, setStopCodonFreqs.pl, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, splitMfasta.pl, split_wiggle.pl, stringtie2fa.py, summarizeACGTcontent.pl, transMap2hints.pl, uniquePeptides.pl, utrgff2gbrowse.pl, utrrnaseq, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, yaml2gff.1.4.pl, bam2hints, etraining, fastBlockSearch, filterBam, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign, twoBitInfo, faToTwoBit
GITHUB quay.io/biocontainers/auspice shpc-registry automated BioContainers addition for auspice auspice, corepack, node, npm, npx
GITHUB quay.io/biocontainers/autodock-vina shpc-registry automated BioContainers addition for autodock-vina vina, vina_split
GITHUB quay.io/biocontainers/autodock shpc-registry automated BioContainers addition for autodock autodock4, autodock4.omp
GITHUB quay.io/biocontainers/autogenes shpc-registry automated BioContainers addition for autogenes get_objgraph, undill, natsort, mirror_server, mirror_server_stop, f2py3.9, opj_compress, opj_decompress, opj_dump, h5clear
GITHUB quay.io/biocontainers/autolog shpc-registry automated BioContainers addition for autolog 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv
GITHUB quay.io/biocontainers/autometa shpc-registry automated BioContainers addition for autometa autometa, autometa-bedtools-genomecov, autometa-benchmark, autometa-binning, autometa-binning-ldm, autometa-binning-ldm-loginfo, autometa-binning-summary, autometa-config, autometa-coverage, autometa-download-dataset, autometa-hmmsearch-filter, autometa-kmers, autometa-length-filter, autometa-markers, autometa-orfs, autometa-taxonomy, autometa-taxonomy-lca, autometa-taxonomy-majority-vote, autometa-unclustered-recruitment, autometa-update-databases, gdown, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, doesitcache, ipython3, diamond, parsort
GITHUB quay.io/biocontainers/avro-cwl shpc-registry automated BioContainers addition for avro-cwl avro, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/avro-python2 shpc-registry automated BioContainers addition for avro-python2 avro, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/avro-python3 shpc-registry automated BioContainers addition for avro-python3 avro, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/avro shpc-registry automated BioContainers addition for avro avro, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5
GITHUB quay.io/biocontainers/awscli shpc-registry automated BioContainers addition for awscli aws, aws.cmd, aws_completer, aws_zsh_completer.sh, pyrsa-decrypt-bigfile, pyrsa-encrypt-bigfile, jp.py, easy_install-3.5, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify
GITHUB quay.io/biocontainers/axiome shpc-registry automated BioContainers addition for axiome axiome, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/b2btools shpc-registry automated BioContainers addition for b2btools torchrun, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, protoc, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli
GITHUB quay.io/biocontainers/bacgwasim shpc-registry automated BioContainers addition for bacgwasim BacGWASim, SimBac, gcta64, plink, snp-sites, stone, dendropy-format, x86_64-conda-linux-gnu-pkg-config, pulptest, Magick++-config, MagickCore-config, MagickWand-config, animate, composite
GITHUB quay.io/biocontainers/backports.csv shpc-registry automated BioContainers addition for backports.csv easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5
GITHUB quay.io/biocontainers/backports.unittest_mock shpc-registry automated BioContainers addition for backports.unittest_mock pbr, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config
GITHUB quay.io/biocontainers/backspinpy shpc-registry automated BioContainers addition for backspinpy backspin, futurize, pasteurize, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6
GITHUB quay.io/biocontainers/bacphlip shpc-registry automated BioContainers addition for bacphlip bacphlip, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/bactopia shpc-registry automated BioContainers addition for bactopia amr_report, amrfinder, amrfinder_update, ariba, bactopia, bactopia-citations.py, bactopia-datasets.py, bactopia-download.py, bactopia-prepare.py, bactopia-search.py, bsdcat, bsdcpio, bsdtar, check-assembly-accession.py, check-fastqs.py, cleanup-coverage.py, conda2solv, dna_mutation, dumpsolv, executor, fasta2parts, fasta_check, fasta_extract, gff_check, gimme_taxa.py, installcheck, mamba, mamba-package, mask-consensus.py, merge-blast-json.py, mergesolv, mlst-blast.py, ncbi-genome-download, nextflow, nextflow.bak, ngd, repo2solv, select-references.py, split-coverages.py, staphopia, testsolv, conda-env, cph, fastaq, funzip, unzipsfx, zipgrep, zipinfo, FET.pl, cd-hit-clstr_2_blm8.pl, cds-mapping-stats
GITHUB quay.io/biocontainers/badread shpc-registry automated BioContainers addition for badread badread, edlib-aligner, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc
GITHUB quay.io/biocontainers/baitfisher shpc-registry automated BioContainers addition for baitfisher BaitFilter, BaitFisher
GITHUB quay.io/biocontainers/bakdrive shpc-registry automated BioContainers addition for bakdrive bakdrive, httpx, isympy, cmark, pulptest, cbc, clp, glpsol, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py
GITHUB quay.io/biocontainers/bakta shpc-registry automated BioContainers addition for bakta EukHighConfidenceFilter, amr_report, amrfinder, amrfinder_update, bakta, bakta_db, bakta_proteins, covels-SE, coves-SE, dna_mutation, eufindtRNA, fasta2gsi, fasta2parts, fasta_check, fasta_extract, gff_check, pilercr, sstofa, tRNAscan-SE, tRNAscan-SE.conf, trnascan-1.4, aragorn, igzip, pbunzip2, pbzcat, pbzip2, cmalign, cmbuild, cmcalibrate, cmconvert, cmemit
GITHUB quay.io/biocontainers/bali-phy shpc-registry automated BioContainers addition for bali-phy alignment-cat, alignment-chop-internal, alignment-compare, alignment-consensus, alignment-convert, alignment-distances, alignment-draw, alignment-find, alignment-find-conserved, alignment-gild, alignment-identity, alignment-indices, alignment-info, alignment-max, alignment-smc, alignment-thin, alignment-translate, alignments-diff, bali-phy, bali-phy-pkg, bali-subsample, bp-analyze, cut-range, draw-graph, draw-tree, extract-ancestors, joint-indels, joint-parsimony, mctree-mean-lengths, model_P, partitions-supported, path-graph, pickout, statreport, stats-cat, stats-merge, stats-select, summarize-ancestors, tree-mean-lengths, tree-partitions, tree-reroot, tree-tool, trees-bootstrap, trees-consensus, trees-distances, trees-pair-distances, trees-to-SRQ, chrpath, gnuplot, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config
GITHUB quay.io/biocontainers/balrog shpc-registry automated BioContainers addition for balrog balrog, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/baltic shpc-registry automated BioContainers addition for baltic f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc
GITHUB quay.io/biocontainers/bam-readcount shpc-registry automated BioContainers addition for bam-readcount bam-readcount, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, perl5.26.2, podselect
GITHUB quay.io/biocontainers/bam2fasta shpc-registry automated BioContainers addition for bam2fasta bam2fasta, pathos_connect, portpicker, pox, ppserver, screed, get_objgraph, undill, tqdm, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/bam2fastx shpc-registry automated BioContainers addition for bam2fastx bam2fasta, bam2fastq, bam2sam, ccs-kinetics-bystrandify, pbbamify, pbindex, pbindexdump, pbmerge, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/bamaddrg shpc-registry automated BioContainers addition for bamaddrg bamaddrg
GITHUB quay.io/biocontainers/bamaligncleaner shpc-registry automated BioContainers addition for bamaligncleaner bamAlignCleaner, tqdm, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/bambamc shpc-registry automated BioContainers addition for bambamc
GITHUB quay.io/biocontainers/bamclipper shpc-registry automated BioContainers addition for bamclipper bamclipper.sh, clipprimer.pl, injectseparator.pl, parsort, perl5.32.0, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh
GITHUB quay.io/biocontainers/bamcmp shpc-registry automated BioContainers addition for bamcmp bamcmp, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/bamhash shpc-registry automated BioContainers addition for bamhash bamhash_checksum_bam, bamhash_checksum_fasta, bamhash_checksum_fastq
GITHUB quay.io/biocontainers/bamkit shpc-registry automated BioContainers addition for bamkit bamcleanheader.py, bamfilterrg.py, bamgroupreads.py, bamheadrg.py, bamlibs.py, bamtofastq.py, sectosupp, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/bamm shpc-registry automated BioContainers addition for bamm bamFlags, bamm, perl5.32.0, qualfa2fq.pl, xa2multi.pl, bwa, f2py2, f2py2.7, fasta-sanitize.pl, plot-ampliconstats, python2-config, python2.7-config
GITHUB quay.io/biocontainers/bamr shpc-registry automated BioContainers addition for bamr 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/bamread shpc-registry automated BioContainers addition for bamread bamread, natsort, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7
GITHUB quay.io/biocontainers/bamscale shpc-registry automated BioContainers addition for bamscale BAMscale, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/bamsnap shpc-registry automated BioContainers addition for bamsnap bamsnap, faidx, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, jpgicc
GITHUB quay.io/biocontainers/bamtocov shpc-registry automated BioContainers addition for bamtocov average-coverage.py, bamcountrefs, bamtarget, bamtocounts, bamtocov, comparecounts.py, covToWig.py, covtotarget, feat-counts.py, gff2bed.py, low-cov-multisample.py, make-target-from-bam.py, prokka-annotation-refupdate.py, strip-seq-from-bam.py, gff2bed, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/bamtools shpc-registry automated BioContainers addition for bamtools bamtools
GITHUB quay.io/biocontainers/bamutil shpc-registry automated BioContainers addition for bamutil bam
GITHUB quay.io/biocontainers/bandage shpc-registry automated BioContainers addition for bandage
GITHUB quay.io/biocontainers/banner shpc-registry automated BioContainers addition for banner banner, conv-template, from-template, py.test, pytest, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m
GITHUB quay.io/biocontainers/barcode_splitter shpc-registry automated BioContainers addition for barcode_splitter barcode_splitter, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/baredsc shpc-registry automated BioContainers addition for baredsc baredSC_1d, baredSC_2d, combineMultipleModels_1d, combineMultipleModels_2d, nc3tonc4, nc4tonc3, ncinfo, zipcmp, zipmerge, ziptool, natsort, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8
GITHUB quay.io/biocontainers/barriers shpc-registry automated BioContainers addition for barriers barriers, crossrates.pl, fix_bar.pl, genPoHoLandscape, saddle.pl, saddle2dot.pl, saddle2gml.pl, treeplot.pl, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold
GITHUB quay.io/biocontainers/barrnap-python shpc-registry automated BioContainers addition for barrnap-python barrnap.py, barrnap, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct
GITHUB quay.io/biocontainers/barrnap shpc-registry automated BioContainers addition for barrnap barrnap, perl5.32.0, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev
GITHUB quay.io/biocontainers/basenji shpc-registry automated BioContainers addition for basenji akita_data.py, akita_data_read.py, akita_data_write.py, akita_predict.py, akita_sat_plot.py, akita_sat_vcf.py, akita_scd.py, akita_scd_multi.py, akita_test.py, akita_train.py, bam_cov.py, basenji_annot_chr.py, basenji_bench_classify.py, basenji_bench_gtex.py, basenji_bench_gtex_cmp.py, basenji_bench_phylop.py, basenji_bench_phylop_folds.py, basenji_cmp.py, basenji_data.py, basenji_data2.py, basenji_data_align.py, basenji_data_gene.py, basenji_data_hic_read.py, basenji_data_hic_write.py, basenji_data_read.py, basenji_data_write.py, basenji_fetch_app.py, basenji_fetch_app1.py, basenji_fetch_app2.py, basenji_fetch_norm.py, basenji_fetch_vcf.py, basenji_gtex_folds.py, basenji_hdf5_genes.py, basenji_hidden.py, basenji_map.py, basenji_map_genes.py, basenji_map_seqs.py, basenji_motifs.py, basenji_motifs_denovo.py, basenji_norm_h5.py, basenji_predict.py, basenji_predict_bed.py, basenji_predict_bed_multi.py, basenji_sad.py, basenji_sad_multi.py, basenji_sad_norm.py, basenji_sad_ref.py, basenji_sad_ref_multi.py, basenji_sad_table.py, basenji_sat_bed.py, basenji_sat_bed_multi.py, basenji_sat_folds.py, basenji_sat_plot.py, basenji_sat_plot2.py, basenji_sat_vcf.py, basenji_sed.py, basenji_sed_multi.py, basenji_sedg.py, basenji_test.py, basenji_test_folds.py, basenji_test_genes.py, basenji_test_reps.py, basenji_test_specificity.py, basenji_train.py, basenji_train1.py, basenji_train2.py, basenji_train_folds.py, basenji_train_hic.py, basenji_train_reps.py, cooltools, fits2bitmap, fitscheck, fitsdiff, fitsheader, fitsinfo, import_pb_to_tensorboard, samp_hub, save_model.py, showtable, sonnet_predict_bed.py, sonnet_sad.py, sonnet_sad_multi.py, sonnet_sat_bed.py, sonnet_sat_vcf.py, tfr_bw.py, tfr_hdf5.py, tfr_qc.py, upgrade_tf1.py, volint, wcslint, cooler, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix
GITHUB quay.io/biocontainers/basic shpc-registry automated BioContainers addition for basic BASIC.py, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, perl5.26.2
GITHUB quay.io/biocontainers/batch_brb shpc-registry automated BioContainers addition for batch_brb accession_retrieve, adb01_check_db.py, adb02_add_alias_to_db.py, aliasdb_pipeline, alncut, alnpi, ar01_accret.py, bash, bashbug, batch_brb_functions.py, batch_brb_setup, batch_makeblastdb, del01_delete_db_entries.py, delete_db, fascodon, fascomp, fasconvert, fascut, fasfilter, fasgrep, fashead, faslen, faspaste, fasrc, fassort, fassub, fastail, fastax, fastaxsort, fastr, fasttree_pipeline, fasuniq, faswc, fasxl, ft01_extract_accessions.py, gbfalncut, gbfcut, mdb01_makeblastdb.sh, mdb02_convert_headers.py, mdb03_add_to_db.py, merge_results, or01_filter_hits.py, or02_find_orthologs.py, orthology_pipeline, show, seqkit, FastTree-2.1.10.c, FastTreeMP, muscle, FastTree, fasttree, CA.pm, cacert.pem, index-themes, fetch-extras
GITHUB quay.io/biocontainers/bats shpc-registry automated BioContainers addition for bats bats
GITHUB quay.io/biocontainers/batvi shpc-registry automated BioContainers addition for batvi call_integrations.sh, cat_sorted_sam.sh, clean_run.sh, collate.sh, collate_from_file.sh, combine_hits.pl, commandline.sh, convert_to_fastq.sh, email.sh, extract_hbv_from_fasta.sh, extract_sam_xargs.sh, extract_unmapped_and_oneside.sh, extracthbv.sh, gen_paths.sh, get_blast_hits.sh, get_reads.pl, hbvblast.sh, join_sam.sh, manualcompile.sh, relabelunbugreads.sh, search_text.sh, sort_by_name.sh, unbug.pl, unbug.sh, unbug_xarg.sh, view_xargs.sh, build.sh, picard, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns
GITHUB quay.io/biocontainers/bax2bam shpc-registry automated BioContainers addition for bax2bam bam2sam, bax2bam, pbbamify, pbindex, pbindexdump, pbmerge, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff
GITHUB quay.io/biocontainers/bayesase shpc-registry automated BioContainers addition for bayesase bwa_split_sam_seonly_2output.py, calculate_priors_ase_count_tables.py, check_aln_design_file.py, check_comparate_design_file.py, check_lost_reads.py, check_sam_present.py, check_samcomp_lost_reads.py, combine_count_tables.py, merge_comparates_generate_bayesian_headers.py, merge_priors_to_comparate.py, nbmodel_stan2.py, sam_compare_w_feature.py, summarize_sam_compare_cnts_table_1cond.py, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin, c89, c99
GITHUB quay.io/biocontainers/bayescan shpc-registry automated BioContainers addition for bayescan bayescan2
GITHUB quay.io/biocontainers/bayestyper shpc-registry automated BioContainers addition for bayestyper bayesTyper, bayesTyperTools
GITHUB quay.io/biocontainers/bazam shpc-registry automated BioContainers addition for bazam bazam, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bbknn shpc-registry automated BioContainers addition for bbknn numba, pycc, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config
GITHUB quay.io/biocontainers/bbmap shpc-registry automated BioContainers addition for bbmap bbmap.sh, bbmapskimmer.sh, demuxbyname2.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, sketchblacklist2.sh, splitribo.sh, addssu.sh, adjusthomopolymers.sh, analyzeaccession.sh, analyzegenes.sh
GITHUB quay.io/biocontainers/bcalm shpc-registry automated BioContainers addition for bcalm bcalm, h5cc
GITHUB quay.io/biocontainers/bcbio-gff shpc-registry automated BioContainers addition for bcbio-gff aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py
GITHUB quay.io/biocontainers/bcbio-prioritize shpc-registry automated BioContainers addition for bcbio-prioritize bcbio-prioritize, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bcbio-rnaseq shpc-registry automated BioContainers addition for bcbio-rnaseq bcbio-rnaseq, pandoc-citeproc, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj
GITHUB quay.io/biocontainers/bcbio-variation-recall shpc-registry automated BioContainers addition for bcbio-variation-recall bcbio-variation-recall, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bcbio-variation shpc-registry automated BioContainers addition for bcbio-variation bcbio-variation, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bcbio_monitor shpc-registry automated BioContainers addition for bcbio_monitor bcbio_monitor, flask, cxpm, sxpm, acyclic, bcomps, ccomps, circo, dijkstra, dot, dot2gxl
GITHUB quay.io/biocontainers/bcbiogff shpc-registry automated BioContainers addition for bcbiogff f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/bcbreport shpc-registry automated BioContainers addition for bcbreport 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/bcdoc shpc-registry automated BioContainers addition for bcdoc easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, rst2html.py
GITHUB quay.io/biocontainers/bcftools-gtc2vcf-plugin shpc-registry automated BioContainers addition for bcftools-gtc2vcf-plugin guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl
GITHUB quay.io/biocontainers/bcftools-snvphyl-plugin shpc-registry automated BioContainers addition for bcftools-snvphyl-plugin guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/bcftools shpc-registry automated BioContainers addition for bcftools
GITHUB quay.io/biocontainers/bcl2fastq-nextseq shpc-registry automated BioContainers addition for bcl2fastq-nextseq bcl_to_fastq, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc
GITHUB quay.io/biocontainers/bcool shpc-registry automated BioContainers addition for bcool bcalm, bcool, bgreat, btrim, ntcard, nthll, h5cc, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/bcov shpc-registry automated BioContainers addition for bcov bcov, glpsol
GITHUB quay.io/biocontainers/bctools shpc-registry automated BioContainers addition for bctools convert_bc_to_binary_RY.py, coords2clnt.py, datamash, extract_aln_ends.py, extract_bcs.py, merge_pcr_duplicates.py, remove_tail.py, rm_spurious_events.pl, rm_spurious_events.py, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, f2py3.6, guess-ploidy.py
GITHUB quay.io/biocontainers/bd2k-python-lib shpc-registry automated BioContainers addition for bd2k-python-lib 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/beagle-lib shpc-registry automated BioContainers addition for beagle-lib cups-config, ippeveprinter, ipptool, libtoolize, libtool, jfr, jaotc, aserver, jdeprscan, jhsdb
GITHUB quay.io/biocontainers/beagle shpc-registry automated BioContainers addition for beagle beagle, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/beamspy shpc-registry automated BioContainers addition for beamspy beamspy, pyside2-lupdate, pyside2-rcc, pyside2-uic, pyside_tool.py, shiboken2, shiboken_tool.py, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, qwebengine_convert_dict
GITHUB quay.io/biocontainers/beast shpc-registry automated BioContainers addition for beast beast, beauti, loganalyser, logcombiner, treeannotator, treestat, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/beast2 shpc-registry automated BioContainers addition for beast2 applauncher, beast, beauti, densitree, loganalyser, logcombiner, packagemanager, treeannotator, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/bedops shpc-registry automated BioContainers addition for bedops bedops, bedops-float128, bedops-megarow, bedops-typical, switch-BEDOPS-binary-type, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical, bam2bed_sge, bam2bed_sge-float128
GITHUB quay.io/biocontainers/bedparse shpc-registry automated BioContainers addition for bedparse bedparse, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/bedtk shpc-registry automated BioContainers addition for bedtk bedtk
GITHUB quay.io/biocontainers/bedtools shpc-registry automated BioContainers addition for bedtools bedtools, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, closestBed, clusterBed
GITHUB quay.io/biocontainers/behst shpc-registry automated BioContainers addition for behst behst, behst-download-data, behst-download-data.sh, behst.orig, behst.py, chromRegionLength.r, dataframeSumAllValues.r, difference_from_first_TSS_script_mordor.r, difference_from_first_TSS_script_mordor_chrom_wide.r, download_behst_data.sh, gProfilerCall.r, gene_annotation_parser.py, gene_annotation_parser_load_pickled_files.py, hiC_parser.py, hiC_parser_load_pickle_file.py, list_of_files, plot_heatmaps.r, project.sh, project.sh.orig, pvaluesPlotGenerator.r, retrieveMinRowCol.r, script_all_heatmaps.sh, script_multi_project_run.sh, script_multi_project_run_WITHOUT_LOOP.sh, script_multi_project_run_input_parameters.sh, temp_test.sh, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, idn2, shiftBed
GITHUB quay.io/biocontainers/bel-resources shpc-registry automated BioContainers addition for bel-resources bel-resources, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/bellerophon shpc-registry automated BioContainers addition for bellerophon bellerophon, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/bellmans-gapc shpc-registry automated BioContainers addition for bellmans-gapc gapc
GITHUB quay.io/biocontainers/berokka shpc-registry automated BioContainers addition for berokka berokka, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml, basemlg, chi2, codeml, evolver, infinitesites
GITHUB quay.io/biocontainers/besst shpc-registry automated BioContainers addition for besst reads_to_ctg_map.py, runBESST, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/bftools shpc-registry automated BioContainers addition for bftools bf.sh, bfconvert, bioformats_package.jar, config.sh, domainlist, formatlist, ijview, mkfake, showinf, tiffcomment, xmlindent, xmlvalid, metadata_conda_debug.yaml, jpackage, cups-config, ippeveprinter, ipptool, build_env_setup.sh, conda_build.sh, jfr, aserver, jdeprscan
GITHUB quay.io/biocontainers/bgreat shpc-registry automated BioContainers addition for bgreat bgreat
GITHUB quay.io/biocontainers/biasaway shpc-registry automated BioContainers addition for biasaway biasaway, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc, tificc
GITHUB quay.io/biocontainers/bibliospec shpc-registry automated BioContainers addition for bibliospec BlibBuild, BlibFilter, BlibSearch, BlibToMs2
GITHUB quay.io/biocontainers/bicseq2-norm shpc-registry automated BioContainers addition for bicseq2-norm BRS, NBICseq-norm.pl, PrepPois, PrepPoisGAM, combineFile, compRatio.R, filterCNV, normalize.R, normalizeGAM.R, plot_RC_vs_GC.R, purity.R, purityEM, random_split, refine.R, refineGAM.R, test.mgcv.installed.R, perl5.32.1, streamzip
GITHUB quay.io/biocontainers/bicseq2-seg shpc-registry automated BioContainers addition for bicseq2-seg BICseqMulSample.pl, BICseqOneSample.pl, BICseqTwoSample.pl, EstLambdaFct, MBICseq, NBICseq-seg.pl, bootstrap, combineFile, combineSegBoostrap.R, countRead, genotype, genotype.pl, plotProfile.R, report.R, reportOneSample.R, perl5.32.1, streamzip
GITHUB quay.io/biocontainers/bifrost shpc-registry automated BioContainers addition for bifrost Bifrost
GITHUB quay.io/biocontainers/bigsi shpc-registry automated BioContainers addition for bigsi bigsi, falcon-bench, falcon-print-routes, hug, humanfriendly, cygdb, cython, cythonize, db_archive, db_checkpoint, db_deadlock, db_dump, db_hotbackup, db_load
GITHUB quay.io/biocontainers/bindash shpc-registry automated BioContainers addition for bindash bindash
GITHUB quay.io/biocontainers/binlorry shpc-registry automated BioContainers addition for binlorry binlorry, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/binning_refiner singularity registry hpc automated addition for binning_refiner Binning_refiner, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/binsanity shpc-registry automated BioContainers addition for binsanity Binsanity, Binsanity-lc, Binsanity-profile, Binsanity-refine, Binsanity-wf, Binsanity2-beta, bin_evaluation, checkm, checkm_analysis, concat, detectionCall, exactSNP, featureCounts, flattenGTF, genRandomReads, get-ids, identifyHMM, propmapped, qualityScores, removeDup, repair, simplify-fasta, subindel, subjunc, sublong, subread-align, subread-buildindex, subread-fullscan, transform-coverage-profile, txUnique, rppr, guppy, pplacer, dendropy-format, sumlabels.py, sumtrees.py, prodigal, hmmpgmd_shard, easel, esl-mixdchlet
GITHUB quay.io/biocontainers/bio-ting shpc-registry automated BioContainers addition for bio-ting imseq2ting, ting, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/bio_assembly_refinement shpc-registry automated BioContainers addition for bio_assembly_refinement contig_break_finder, contig_cleaner, contig_overlap_trimmer, pacbio_post_process, fastaq, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer
GITHUB quay.io/biocontainers/bio_hansel shpc-registry automated BioContainers addition for bio_hansel biohansel, hansel, cmark, pygmentize, futurize, pasteurize, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/bioawk shpc-registry automated BioContainers addition for bioawk bioawk
GITHUB quay.io/biocontainers/biobambam shpc-registry automated BioContainers addition for biobambam bam12auxmerge, bam12split, bam12strip, bamadapterclip, bamadapterfind, bamalignfrac, bamauxmerge, bamauxsort, bamcat, bamchecksort, bamclipreinsert, bamcollate, bamcollate2, bamdownsamplerandom, bamexplode, bamfillquery, bamfilteraux, bamfilterflags, bamfilterheader, bamfilterheader2, bamfilterlength, bamfiltermc, bamfilternames, bamfilterrefid, bamfilterrg, bamfixmateinformation, bamflagsplit, bamheap2, bamindex, bamintervalcomment, bamintervalcommenthist, bamlastfilter, bammapdist, bammarkduplicates, bammarkduplicates2, bammarkduplicatesopt, bammaskflags, bammdnm, bammerge, bamnumericalindex, bamrank, bamranksort, bamrecalculatecigar, bamrecompress, bamrefinterval, bamreset, bamscrapcount, bamseqchksum, bamsormadup, bamsort, bamsplit, bamsplitdiv, bamstreamingmarkduplicates, bamtagconversion, bamtofastq, bamvalidate, bamzztoname
GITHUB quay.io/biocontainers/biobasehttptools shpc-registry automated BioContainers addition for biobasehttptools AccessionToTaxId, AccessionToTaxId-bin, FetchSequence, FetchSequence-bin, GeneIdToGOTerms, GeneIdToGOTerms-bin, GeneIdToUniProtId, GeneIdToUniProtId-bin
GITHUB quay.io/biocontainers/biobb_adapters shpc-registry automated BioContainers addition for biobb_adapters bagit.py, black, black-primer, blackd, jupyter-console, jupyter-dejavu, jupyter-qtconsole, prov-compare, prov-convert, send2trash, cwltool, schema-salad-doc, schema-salad-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, jupyter-bundlerextension, jupyter-nbextension
GITHUB quay.io/biocontainers/biobb_amber shpc-registry automated BioContainers addition for biobb_amber AddToBox, CartHess2FC.py, ChBox, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, MMPBSA.py.MPI, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, amber_to_pdb, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, bar_pbsa.py, bondtype, bondtype.orig, car_to_files.py, ceinutil.py, cestats, cestats_run, charmmlipid2amber.py, cpeinutil.py, cphstats, cphstats_run, cpinutil.py, cpptraj, cpptraj_randomize_ions, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gwh, hcp_getpdb, leap_add_ions, leap_build_linear_structure, leap_gen_top, leap_solvate, makeANG_RST, makeCHIR_RST, makeCSA_RST.na, makeDIP_RST.protein, makeDIST_RST, makeRIGID_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nab_build_dna_structure, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, parmed_cpinutil, parmed_hmassrepartition, pbsa, pdb4amber, pdb4amber_run, pmemd_mdrun, prepgen, process_mdout, process_mdout.perl, process_minout, process_minout.perl, py_resp.py, pymdpbsa, pytleap, reduce, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, sander_mdrun, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tinker_to_amber, tleap, ucpp, xaLeap, xleap, xparmed, cygdb, cython, cythonize, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc
GITHUB quay.io/biocontainers/biobb_analysis shpc-registry automated BioContainers addition for biobb_analysis AddToBox, CartHess2FC.py, ChBox, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, MMPBSA.py.MPI, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, bar_pbsa.py, bondtype, bondtype.orig, car_to_files.py, ceinutil.py, cestats, charmmlipid2amber.py, cpeinutil.py, cphstats, cpinutil.py, cpptraj, cpptraj_average, cpptraj_bfactor, cpptraj_convert, cpptraj_dry, cpptraj_image, cpptraj_mask, cpptraj_rgyr, cpptraj_rms, cpptraj_rmsf, cpptraj_slice, cpptraj_snapshot, cpptraj_strip, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gmx, gmx_cluster, gmx_energy, gmx_image, gmx_rgyr, gmx_rms, gmx_trjconv_str, gmx_trjconv_str_ens, gmx_trjconv_trj, gwh, hcp_getpdb, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, makeANG_RST, makeCHIR_RST, makeCSA_RST.na, makeDIP_RST.protein, makeDIST_RST, makeRIGID_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, pbsa, pdb4amber, prepgen, process_mdout.perl, process_minout.perl, py_resp.py, pymdpbsa, pytleap, reduce, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tinker_to_amber, tleap, ucpp, xaLeap, xleap, xparmed, cygdb, cython, cythonize, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc
GITHUB quay.io/biocontainers/biobb_chemistry shpc-registry automated BioContainers addition for biobb_chemistry AddToBox, CartHess2FC.py, ChBox, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, MMPBSA.py.MPI, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, acpype, acpype_params_ac, acpype_params_cns, acpype_params_gmx, acpype_params_gmx_opls, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, babel_add_hydrogens, babel_convert, babel_minimize, babel_remove_hydrogens, bar_pbsa.py, bondtype, bondtype.orig, car_to_files.py, ceinutil.py, cestats, charmmlipid2amber.py, cpeinutil.py, cphstats, cpinutil.py, cpptraj, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gwh, hcp_getpdb, makeANG_RST, makeCHIR_RST, makeCSA_RST.na, makeDIP_RST.protein, makeDIST_RST, makeRIGID_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, obfitall, obmm, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, pbsa, pdb4amber, prepgen, process_mdout.perl, process_minout.perl, py_resp.py, pymdpbsa, pytleap, reduce, reduce_add_hydrogens, reduce_remove_hydrogens, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tinker_to_amber, tleap, ucpp, xaLeap, xleap, xparmed, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop
GITHUB quay.io/biocontainers/biobb_cmip shpc-registry automated BioContainers addition for biobb_cmip avgEpsGrid, canal, check_structure, cmip, getPatch, grd2cube, gsd, mrcfile-header, mrcfile-validate, nc3tonc4, nc4tonc3, ncinfo, prepare_structure, surfnet2binaryGrid, titration, watden, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/biobb_common shpc-registry automated BioContainers addition for biobb_common normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/biobb_dna shpc-registry automated BioContainers addition for biobb_dna AddToBox, Canal, Canion, CartHess2FC.py, ChBox, Cur+, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, average_stiffness, basepair_stiffness, biobb_canal, biobb_canion, biobb_curves, bipopulations, bondtype, bondtype.orig, canonicalag, car_to_files.py, ceinutil.py, cestats, charmmlipid2amber.py, cpeinutil.py, cphstats, cpinutil.py, cpptraj, dna_averages, dna_bimodality, dna_timeseries, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gwh, hcp_getpdb, interbpcorr, interhpcorr, interseqcorr, intrabpcorr, intrahpcorr, intraseqcorr, makeANG_RST, makeDIST_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, pbsa, pdb4amber, prepgen, process_mdout.perl, process_minout.perl, puckering, pymdpbsa, pytleap, reduce, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tleap, ucpp, xaLeap, xleap, xparmed, cygdb, cython, cythonize, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/biobb_io shpc-registry automated BioContainers addition for biobb_io alphafold, api_binding_site, canonical_fasta, drugbank, ideal_sdf, ligand, memprotmd_sim, memprotmd_sim_list, memprotmd_sim_search, mmcif, pdb, pdb_cluster_zip, pdb_variants, structure_info, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/biobb_md shpc-registry automated BioContainers addition for biobb_md GMXRC, GMXRC.bash, GMXRC.csh, GMXRC.zsh, append_ligand, demux.pl, editconf, genion, genrestr, gmx, gmx-completion-gmx.bash, gmx-completion.bash, gmxselect, grompp, grompp_mdrun, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, make_ndx, mdrun, ndx2resttop, pdb2gmx, solvate, xplor2gmx.pl, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, normalizer, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7
GITHUB quay.io/biocontainers/biobb_ml shpc-registry automated BioContainers addition for biobb_ml agglomerative_clustering, agglomerative_coefficient, autoencoder_neural_network, classification_neural_network, classification_predict, clustering_predict, correlation_matrix, dbscan, decision_tree, dendrogram, drop_columns, dummy_variables, import_pb_to_tensorboard, k_means, k_means_coefficient, k_neighbors, k_neighbors_coefficient, linear_regression, logistic_regression, map_variables, neural_network_decode, neural_network_predict, oversampling, pairwise_comparison, pls_components, pls_regression, polynomial_regression, principal_component, random_forest_classifier, random_forest_regressor, recurrent_neural_network, regression_neural_network, regression_predict, resampling, scale_columns, spectral_clustering, spectral_coefficient, support_vector_machine, undersampling, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2
GITHUB quay.io/biocontainers/biobb_model shpc-registry automated BioContainers addition for biobb_model check_structure, checking_log, fix_amides, fix_backbone, fix_chirality, fix_side_chain, mutate, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/biobb_pmx shpc-registry automated BioContainers addition for biobb_pmx pmx, pmxanalyse, pmxatom_mapping, pmxcreate_top, pmxgentop, pmxligand_hybrid, pmxmerge_ff, pmxmutate, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, futurize, pasteurize, f2py3.7, opj_compress
GITHUB quay.io/biocontainers/biobb_structure_checking shpc-registry automated BioContainers addition for biobb_structure_checking check_structure, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/biobb_structure_manager shpc-registry automated BioContainers addition for biobb_structure_manager f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/biobb_structure_utils shpc-registry automated BioContainers addition for biobb_structure_utils cat_pdb, check_structure, closest_residues, extract_atoms, extract_chain, extract_heteroatoms, extract_model, extract_molecule, extract_residues, remove_ligand, remove_molecules, remove_pdb_water, renumber_structure, sort_gro_residues, str_check_add_hydrogens, structure_check, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/biobb_vs shpc-registry automated BioContainers addition for biobb_vs autodock_vina_run, bindingsite, box, box_residues, dpocket, extract_model_pdbqt, fpocket, fpocket_filter, fpocket_run, fpocket_select, mdpocket, tpocket, vina, vina_split, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/biobb_wf_mutations shpc-registry automated BioContainers addition for biobb_wf_mutations GMXRC, GMXRC.bash, GMXRC.csh, GMXRC.zsh, bagit.py, demux.pl, editconf, fix_side_chain, genion, genrestr, gmx, gmx-completion-gmx.bash, gmx-completion.bash, grompp, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, jupyter-console, jupyter-qtconsole, lstopo, lstopo-no-graphics, make_ndx, mdrun, mutate, ndx2resttop, pdb, pdb2gmx, pdb_cluster_zip, pdb_variants, prov-compare, prov-convert, solvate, xplor2gmx.pl, cwltool, schema-salad-doc, schema-salad-tool, g-ir-doc-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, jupyter-bundlerextension
GITHUB quay.io/biocontainers/bioblend shpc-registry automated BioContainers addition for bioblend bioblend-galaxy-tests, x86_64-conda_cos7-linux-gnu-ld, normalizer, futurize, pasteurize, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/biocommons.seqrepo shpc-registry automated BioContainers addition for biocommons.seqrepo pyppeteer-install, seqrepo, sqlformat, yoyo, yoyo-migrate, coloredlogs, humanfriendly, tabulate, normalizer, tqdm, xslt-config, xsltproc, 2to3-3.9, idle3.9, pydoc3.9
GITHUB quay.io/biocontainers/bioconda-utils shpc-registry automated BioContainers addition for bioconda-utils anaconda, binstar, bioconda-utils, boa, bsdcat, bsdcpio, bsdtar, celery, conda-build, conda-convert, conda-debug, conda-develop, conda-index, conda-inspect, conda-mambabuild, conda-metapackage, conda-render, conda-server, conda-skeleton, conda-verify, conda2solv, dumpsolv, galaxy-tool-test, installcheck, involucro, mamba, mamba-package, mergesolv, mulled-build, mulled-build-channel, mulled-build-files, mulled-build-tool, mulled-search, patchelf, pkginfo, pyjson5, repo2solv, rg, scalar, skopeo, testsolv, watchgod, conda-env, cph, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, docutils
GITHUB quay.io/biocontainers/bioconda2biocontainer shpc-registry automated BioContainers addition for bioconda2biocontainer bioconda2biocontainer, bioconda2cwldocker, biocontainers-search, normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-a4 shpc-registry automated BioContainers addition for bioconductor-a4
GITHUB quay.io/biocontainers/bioconductor-a4base shpc-registry automated BioContainers addition for bioconductor-a4base
GITHUB quay.io/biocontainers/bioconductor-a4classif shpc-registry automated BioContainers addition for bioconductor-a4classif
GITHUB quay.io/biocontainers/bioconductor-a4core shpc-registry automated BioContainers addition for bioconductor-a4core
GITHUB quay.io/biocontainers/bioconductor-a4preproc shpc-registry automated BioContainers addition for bioconductor-a4preproc
GITHUB quay.io/biocontainers/bioconductor-a4reporting shpc-registry automated BioContainers addition for bioconductor-a4reporting
GITHUB quay.io/biocontainers/bioconductor-abadata shpc-registry automated BioContainers addition for bioconductor-abadata wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-abaenrichment shpc-registry automated BioContainers addition for bioconductor-abaenrichment wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-abarray shpc-registry automated BioContainers addition for bioconductor-abarray
GITHUB quay.io/biocontainers/bioconductor-abseqr shpc-registry automated BioContainers addition for bioconductor-abseqr pandoc, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-absseq shpc-registry automated BioContainers addition for bioconductor-absseq
GITHUB quay.io/biocontainers/bioconductor-acde shpc-registry automated BioContainers addition for bioconductor-acde tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-ace shpc-registry automated BioContainers addition for bioconductor-ace x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-acgh shpc-registry automated BioContainers addition for bioconductor-acgh
GITHUB quay.io/biocontainers/bioconductor-acme shpc-registry automated BioContainers addition for bioconductor-acme
GITHUB quay.io/biocontainers/bioconductor-adacgh2 shpc-registry automated BioContainers addition for bioconductor-adacgh2
GITHUB quay.io/biocontainers/bioconductor-adam shpc-registry automated BioContainers addition for bioconductor-adam x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-adamgui shpc-registry automated BioContainers addition for bioconductor-adamgui x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-adaptest shpc-registry automated BioContainers addition for bioconductor-adaptest 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-adductdata shpc-registry automated BioContainers addition for bioconductor-adductdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-adductomicsr shpc-registry automated BioContainers addition for bioconductor-adductomicsr zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-adimpute shpc-registry automated BioContainers addition for bioconductor-adimpute
GITHUB quay.io/biocontainers/bioconductor-adme16cod.db shpc-registry automated BioContainers addition for bioconductor-adme16cod.db
GITHUB quay.io/biocontainers/bioconductor-adsplit shpc-registry automated BioContainers addition for bioconductor-adsplit
GITHUB quay.io/biocontainers/bioconductor-affixcan shpc-registry automated BioContainers addition for bioconductor-affixcan x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-affxparser shpc-registry automated BioContainers addition for bioconductor-affxparser
GITHUB quay.io/biocontainers/bioconductor-affy shpc-registry automated BioContainers addition for bioconductor-affy
GITHUB quay.io/biocontainers/bioconductor-affycomp shpc-registry automated BioContainers addition for bioconductor-affycomp
GITHUB quay.io/biocontainers/bioconductor-affycompatible shpc-registry automated BioContainers addition for bioconductor-affycompatible
GITHUB quay.io/biocontainers/bioconductor-affycompdata shpc-registry automated BioContainers addition for bioconductor-affycompdata
GITHUB quay.io/biocontainers/bioconductor-affycontam shpc-registry automated BioContainers addition for bioconductor-affycontam
GITHUB quay.io/biocontainers/bioconductor-affycoretools shpc-registry automated BioContainers addition for bioconductor-affycoretools
GITHUB quay.io/biocontainers/bioconductor-affydata shpc-registry automated BioContainers addition for bioconductor-affydata
GITHUB quay.io/biocontainers/bioconductor-affyexpress shpc-registry automated BioContainers addition for bioconductor-affyexpress x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-affyhgu133a2expr shpc-registry automated BioContainers addition for bioconductor-affyhgu133a2expr
GITHUB quay.io/biocontainers/bioconductor-affyhgu133aexpr shpc-registry automated BioContainers addition for bioconductor-affyhgu133aexpr
GITHUB quay.io/biocontainers/bioconductor-affyhgu133plus2expr shpc-registry automated BioContainers addition for bioconductor-affyhgu133plus2expr
GITHUB quay.io/biocontainers/bioconductor-affyilm shpc-registry automated BioContainers addition for bioconductor-affyilm
GITHUB quay.io/biocontainers/bioconductor-affyio shpc-registry automated BioContainers addition for bioconductor-affyio
GITHUB quay.io/biocontainers/bioconductor-affylmgui shpc-registry automated BioContainers addition for bioconductor-affylmgui
GITHUB quay.io/biocontainers/bioconductor-affymetrixdatatestfiles shpc-registry automated BioContainers addition for bioconductor-affymetrixdatatestfiles
GITHUB quay.io/biocontainers/bioconductor-affymoe4302expr shpc-registry automated BioContainers addition for bioconductor-affymoe4302expr
GITHUB quay.io/biocontainers/bioconductor-affypara shpc-registry automated BioContainers addition for bioconductor-affypara x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-affypdnn shpc-registry automated BioContainers addition for bioconductor-affypdnn gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-affyplm shpc-registry automated BioContainers addition for bioconductor-affyplm
GITHUB quay.io/biocontainers/bioconductor-affyqcreport shpc-registry automated BioContainers addition for bioconductor-affyqcreport x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-affyrnadegradation shpc-registry automated BioContainers addition for bioconductor-affyrnadegradation
GITHUB quay.io/biocontainers/bioconductor-ag.db shpc-registry automated BioContainers addition for bioconductor-ag.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-agcdf shpc-registry automated BioContainers addition for bioconductor-agcdf
GITHUB quay.io/biocontainers/bioconductor-agdex shpc-registry automated BioContainers addition for bioconductor-agdex
GITHUB quay.io/biocontainers/bioconductor-aggregatebiovar shpc-registry automated BioContainers addition for bioconductor-aggregatebiovar
GITHUB quay.io/biocontainers/bioconductor-agilp shpc-registry automated BioContainers addition for bioconductor-agilp tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-agimicrorna shpc-registry automated BioContainers addition for bioconductor-agimicrorna
GITHUB quay.io/biocontainers/bioconductor-agprobe shpc-registry automated BioContainers addition for bioconductor-agprobe
GITHUB quay.io/biocontainers/bioconductor-ahcytobands shpc-registry automated BioContainers addition for bioconductor-ahcytobands
GITHUB quay.io/biocontainers/bioconductor-ahensdbs shpc-registry automated BioContainers addition for bioconductor-ahensdbs
GITHUB quay.io/biocontainers/bioconductor-ahlrbasedbs shpc-registry automated BioContainers addition for bioconductor-ahlrbasedbs
GITHUB quay.io/biocontainers/bioconductor-ahmeshdbs shpc-registry automated BioContainers addition for bioconductor-ahmeshdbs
GITHUB quay.io/biocontainers/bioconductor-ahpathbankdbs shpc-registry automated BioContainers addition for bioconductor-ahpathbankdbs
GITHUB quay.io/biocontainers/bioconductor-ahpubmeddbs shpc-registry automated BioContainers addition for bioconductor-ahpubmeddbs
GITHUB quay.io/biocontainers/bioconductor-ahwikipathwaysdbs shpc-registry automated BioContainers addition for bioconductor-ahwikipathwaysdbs
GITHUB quay.io/biocontainers/bioconductor-aims shpc-registry automated BioContainers addition for bioconductor-aims bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-airpart shpc-registry automated BioContainers addition for bioconductor-airpart
GITHUB quay.io/biocontainers/bioconductor-airway shpc-registry automated BioContainers addition for bioconductor-airway 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-aldex2 shpc-registry automated BioContainers addition for bioconductor-aldex2 bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-alevinqc shpc-registry automated BioContainers addition for bioconductor-alevinqc pandoc, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-all shpc-registry automated BioContainers addition for bioconductor-all
GITHUB quay.io/biocontainers/bioconductor-allelicimbalance shpc-registry automated BioContainers addition for bioconductor-allelicimbalance
GITHUB quay.io/biocontainers/bioconductor-allenpvc shpc-registry automated BioContainers addition for bioconductor-allenpvc gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-allmll shpc-registry automated BioContainers addition for bioconductor-allmll
GITHUB quay.io/biocontainers/bioconductor-alphabeta shpc-registry automated BioContainers addition for bioconductor-alphabeta
GITHUB quay.io/biocontainers/bioconductor-alpine shpc-registry automated BioContainers addition for bioconductor-alpine wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-alpinedata shpc-registry automated BioContainers addition for bioconductor-alpinedata wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-alps shpc-registry automated BioContainers addition for bioconductor-alps x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-alpsnmr shpc-registry automated BioContainers addition for bioconductor-alpsnmr pandoc
GITHUB quay.io/biocontainers/bioconductor-alsace shpc-registry automated BioContainers addition for bioconductor-alsace
GITHUB quay.io/biocontainers/bioconductor-altcdfenvs shpc-registry automated BioContainers addition for bioconductor-altcdfenvs
GITHUB quay.io/biocontainers/bioconductor-alternativesplicingevents.hg19 shpc-registry automated BioContainers addition for bioconductor-alternativesplicingevents.hg19
GITHUB quay.io/biocontainers/bioconductor-alternativesplicingevents.hg38 shpc-registry automated BioContainers addition for bioconductor-alternativesplicingevents.hg38
GITHUB quay.io/biocontainers/bioconductor-amaretto shpc-registry automated BioContainers addition for bioconductor-amaretto pandoc, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-amountain shpc-registry automated BioContainers addition for bioconductor-amountain c89, c99
GITHUB quay.io/biocontainers/bioconductor-ampaffyexample shpc-registry automated BioContainers addition for bioconductor-ampaffyexample
GITHUB quay.io/biocontainers/bioconductor-amplican shpc-registry automated BioContainers addition for bioconductor-amplican pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ampliqueso shpc-registry automated BioContainers addition for bioconductor-ampliqueso
GITHUB quay.io/biocontainers/bioconductor-analysispageserver shpc-registry automated BioContainers addition for bioconductor-analysispageserver 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-anamir shpc-registry automated BioContainers addition for bioconductor-anamir gdalserver, pg_verify_checksums, testepsg, pg_standby, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, dap-config
GITHUB quay.io/biocontainers/bioconductor-anaquin shpc-registry automated BioContainers addition for bioconductor-anaquin gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ancombc shpc-registry automated BioContainers addition for bioconductor-ancombc
GITHUB quay.io/biocontainers/bioconductor-aneufinder shpc-registry automated BioContainers addition for bioconductor-aneufinder
GITHUB quay.io/biocontainers/bioconductor-aneufinderdata shpc-registry automated BioContainers addition for bioconductor-aneufinderdata
GITHUB quay.io/biocontainers/bioconductor-anf shpc-registry automated BioContainers addition for bioconductor-anf gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-animalcules shpc-registry automated BioContainers addition for bioconductor-animalcules f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-annaffy shpc-registry automated BioContainers addition for bioconductor-annaffy
GITHUB quay.io/biocontainers/bioconductor-annmap shpc-registry automated BioContainers addition for bioconductor-annmap my_print_defaults, mysql_config, perror
GITHUB quay.io/biocontainers/bioconductor-annotate shpc-registry automated BioContainers addition for bioconductor-annotate
GITHUB quay.io/biocontainers/bioconductor-annotationdbi shpc-registry automated BioContainers addition for bioconductor-annotationdbi
GITHUB quay.io/biocontainers/bioconductor-annotationfilter shpc-registry automated BioContainers addition for bioconductor-annotationfilter gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-annotationforge shpc-registry automated BioContainers addition for bioconductor-annotationforge
GITHUB quay.io/biocontainers/bioconductor-annotationfuncs shpc-registry automated BioContainers addition for bioconductor-annotationfuncs x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-annotationhub shpc-registry automated BioContainers addition for bioconductor-annotationhub
GITHUB quay.io/biocontainers/bioconductor-annotationhubdata shpc-registry automated BioContainers addition for bioconductor-annotationhubdata wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-annotationtools shpc-registry automated BioContainers addition for bioconductor-annotationtools
GITHUB quay.io/biocontainers/bioconductor-annotatr shpc-registry automated BioContainers addition for bioconductor-annotatr wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-anopheles.db0 shpc-registry automated BioContainers addition for bioconductor-anopheles.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-anota shpc-registry automated BioContainers addition for bioconductor-anota
GITHUB quay.io/biocontainers/bioconductor-anota2seq shpc-registry automated BioContainers addition for bioconductor-anota2seq gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-antiprofiles shpc-registry automated BioContainers addition for bioconductor-antiprofiles
GITHUB quay.io/biocontainers/bioconductor-antiprofilesdata shpc-registry automated BioContainers addition for bioconductor-antiprofilesdata
GITHUB quay.io/biocontainers/bioconductor-anvil shpc-registry automated BioContainers addition for bioconductor-anvil
GITHUB quay.io/biocontainers/bioconductor-anvilbilling shpc-registry automated BioContainers addition for bioconductor-anvilbilling
GITHUB quay.io/biocontainers/bioconductor-anvilpublish shpc-registry automated BioContainers addition for bioconductor-anvilpublish pandoc
GITHUB quay.io/biocontainers/bioconductor-apalyzer shpc-registry automated BioContainers addition for bioconductor-apalyzer
GITHUB quay.io/biocontainers/bioconductor-apcomplex shpc-registry automated BioContainers addition for bioconductor-apcomplex
GITHUB quay.io/biocontainers/bioconductor-apeglm shpc-registry automated BioContainers addition for bioconductor-apeglm gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-apl singularity registry hpc automated addition for bioconductor-apl geosop, geos-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-appreci8r shpc-registry automated BioContainers addition for bioconductor-appreci8r 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-arabidopsis.db0 shpc-registry automated BioContainers addition for bioconductor-arabidopsis.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-aracne.networks shpc-registry automated BioContainers addition for bioconductor-aracne.networks wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-aroma.light shpc-registry automated BioContainers addition for bioconductor-aroma.light tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-arrayexpress shpc-registry automated BioContainers addition for bioconductor-arrayexpress
GITHUB quay.io/biocontainers/bioconductor-arrayexpresshts shpc-registry automated BioContainers addition for bioconductor-arrayexpresshts jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink
GITHUB quay.io/biocontainers/bioconductor-arraymvout shpc-registry automated BioContainers addition for bioconductor-arraymvout
GITHUB quay.io/biocontainers/bioconductor-arrayquality shpc-registry automated BioContainers addition for bioconductor-arrayquality
GITHUB quay.io/biocontainers/bioconductor-arrayqualitymetrics shpc-registry automated BioContainers addition for bioconductor-arrayqualitymetrics
GITHUB quay.io/biocontainers/bioconductor-arraytools shpc-registry automated BioContainers addition for bioconductor-arraytools x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-arraytv shpc-registry automated BioContainers addition for bioconductor-arraytv 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-arrmdata shpc-registry automated BioContainers addition for bioconductor-arrmdata
GITHUB quay.io/biocontainers/bioconductor-arrmnormalization shpc-registry automated BioContainers addition for bioconductor-arrmnormalization
GITHUB quay.io/biocontainers/bioconductor-artms shpc-registry automated BioContainers addition for bioconductor-artms x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-asafe shpc-registry automated BioContainers addition for bioconductor-asafe c89, c99
GITHUB quay.io/biocontainers/bioconductor-aseb shpc-registry automated BioContainers addition for bioconductor-aseb
GITHUB quay.io/biocontainers/bioconductor-asgsca shpc-registry automated BioContainers addition for bioconductor-asgsca
GITHUB quay.io/biocontainers/bioconductor-ashkenazimsonchr21 shpc-registry automated BioContainers addition for bioconductor-ashkenazimsonchr21
GITHUB quay.io/biocontainers/bioconductor-asics shpc-registry automated BioContainers addition for bioconductor-asics x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-asicsdata shpc-registry automated BioContainers addition for bioconductor-asicsdata 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-aspediafi shpc-registry automated BioContainers addition for bioconductor-aspediafi
GITHUB quay.io/biocontainers/bioconductor-aspli shpc-registry automated BioContainers addition for bioconductor-aspli pandoc
GITHUB quay.io/biocontainers/bioconductor-assessorf shpc-registry automated BioContainers addition for bioconductor-assessorf x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-assessorfdata shpc-registry automated BioContainers addition for bioconductor-assessorfdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-asset shpc-registry automated BioContainers addition for bioconductor-asset x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-assign shpc-registry automated BioContainers addition for bioconductor-assign
GITHUB quay.io/biocontainers/bioconductor-asurat singularity registry hpc automated addition for bioconductor-asurat installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-ataccogaps singularity registry hpc automated addition for bioconductor-ataccogaps installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, pandoc, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-atacseqqc shpc-registry automated BioContainers addition for bioconductor-atacseqqc gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-atacseqtfea singularity registry hpc automated addition for bioconductor-atacseqtfea installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-atena shpc-registry automated BioContainers addition for bioconductor-atena
GITHUB quay.io/biocontainers/bioconductor-ath1121501.db shpc-registry automated BioContainers addition for bioconductor-ath1121501.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-ath1121501cdf shpc-registry automated BioContainers addition for bioconductor-ath1121501cdf
GITHUB quay.io/biocontainers/bioconductor-ath1121501probe shpc-registry automated BioContainers addition for bioconductor-ath1121501probe
GITHUB quay.io/biocontainers/bioconductor-atlasrdf shpc-registry automated BioContainers addition for bioconductor-atlasrdf bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-atsnp shpc-registry automated BioContainers addition for bioconductor-atsnp x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-attract shpc-registry automated BioContainers addition for bioconductor-attract
GITHUB quay.io/biocontainers/bioconductor-aucell shpc-registry automated BioContainers addition for bioconductor-aucell gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-autonomics shpc-registry automated BioContainers addition for bioconductor-autonomics
GITHUB quay.io/biocontainers/bioconductor-autotuner shpc-registry automated BioContainers addition for bioconductor-autotuner zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-awfisher shpc-registry automated BioContainers addition for bioconductor-awfisher
GITHUB quay.io/biocontainers/bioconductor-awst shpc-registry automated BioContainers addition for bioconductor-awst
GITHUB quay.io/biocontainers/bioconductor-baalchip shpc-registry automated BioContainers addition for bioconductor-baalchip wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-bac shpc-registry automated BioContainers addition for bioconductor-bac
GITHUB quay.io/biocontainers/bioconductor-bacon shpc-registry automated BioContainers addition for bioconductor-bacon
GITHUB quay.io/biocontainers/bioconductor-bader shpc-registry automated BioContainers addition for bioconductor-bader
GITHUB quay.io/biocontainers/bioconductor-badregionfinder shpc-registry automated BioContainers addition for bioconductor-badregionfinder wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-bags shpc-registry automated BioContainers addition for bioconductor-bags
GITHUB quay.io/biocontainers/bioconductor-ballgown shpc-registry automated BioContainers addition for bioconductor-ballgown tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-bambu shpc-registry automated BioContainers addition for bioconductor-bambu xgboost
GITHUB quay.io/biocontainers/bioconductor-bamsignals shpc-registry automated BioContainers addition for bioconductor-bamsignals
GITHUB quay.io/biocontainers/bioconductor-bandits shpc-registry automated BioContainers addition for bioconductor-bandits x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-bandle singularity registry hpc automated addition for bioconductor-bandle zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff, hdp, hrepack, jpeg2hdf, paltohdf
GITHUB quay.io/biocontainers/bioconductor-banocc shpc-registry automated BioContainers addition for bioconductor-banocc gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-barcodetrackr shpc-registry automated BioContainers addition for bioconductor-barcodetrackr
GITHUB quay.io/biocontainers/bioconductor-barley1cdf shpc-registry automated BioContainers addition for bioconductor-barley1cdf
GITHUB quay.io/biocontainers/bioconductor-barley1probe shpc-registry automated BioContainers addition for bioconductor-barley1probe
GITHUB quay.io/biocontainers/bioconductor-basecallqc shpc-registry automated BioContainers addition for bioconductor-basecallqc pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-basespacer shpc-registry automated BioContainers addition for bioconductor-basespacer
GITHUB quay.io/biocontainers/bioconductor-basic4cseq shpc-registry automated BioContainers addition for bioconductor-basic4cseq bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-basics shpc-registry automated BioContainers addition for bioconductor-basics glpsol
GITHUB quay.io/biocontainers/bioconductor-basicstan singularity registry hpc automated addition for bioconductor-basicstan installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-basicstarrseq shpc-registry automated BioContainers addition for bioconductor-basicstarrseq
GITHUB quay.io/biocontainers/bioconductor-basilisk shpc-registry automated BioContainers addition for bioconductor-basilisk
GITHUB quay.io/biocontainers/bioconductor-basilisk.utils shpc-registry automated BioContainers addition for bioconductor-basilisk.utils
GITHUB quay.io/biocontainers/bioconductor-batchelor shpc-registry automated BioContainers addition for bioconductor-batchelor x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-batchqc shpc-registry automated BioContainers addition for bioconductor-batchqc pandoc-citeproc, pandoc, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-bayesknockdown shpc-registry automated BioContainers addition for bioconductor-bayesknockdown c89, c99
GITHUB quay.io/biocontainers/bioconductor-bayespeak shpc-registry automated BioContainers addition for bioconductor-bayespeak 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-bayesspace shpc-registry automated BioContainers addition for bioconductor-bayesspace xgboost, glpsol
GITHUB quay.io/biocontainers/bioconductor-baynorm shpc-registry automated BioContainers addition for bioconductor-baynorm x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-bayseq shpc-registry automated BioContainers addition for bioconductor-bayseq
GITHUB quay.io/biocontainers/bioconductor-bbcanalyzer shpc-registry automated BioContainers addition for bioconductor-bbcanalyzer my_print_defaults, mysql_config, perror, wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-bcellviper shpc-registry automated BioContainers addition for bioconductor-bcellviper
GITHUB quay.io/biocontainers/bioconductor-bcrank shpc-registry automated BioContainers addition for bioconductor-bcrank
GITHUB quay.io/biocontainers/bioconductor-bcseq shpc-registry automated BioContainers addition for bioconductor-bcseq gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-bdmmacorrect shpc-registry automated BioContainers addition for bioconductor-bdmmacorrect x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-beachmat shpc-registry automated BioContainers addition for bioconductor-beachmat x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-beadarray shpc-registry automated BioContainers addition for bioconductor-beadarray
GITHUB quay.io/biocontainers/bioconductor-beadarrayexampledata shpc-registry automated BioContainers addition for bioconductor-beadarrayexampledata
GITHUB quay.io/biocontainers/bioconductor-beadarraysnp shpc-registry automated BioContainers addition for bioconductor-beadarraysnp
GITHUB quay.io/biocontainers/bioconductor-beadarrayusecases shpc-registry automated BioContainers addition for bioconductor-beadarrayusecases
GITHUB quay.io/biocontainers/bioconductor-beaddatapackr shpc-registry automated BioContainers addition for bioconductor-beaddatapackr
GITHUB quay.io/biocontainers/bioconductor-beadsorted.saliva.epic shpc-registry automated BioContainers addition for bioconductor-beadsorted.saliva.epic
GITHUB quay.io/biocontainers/bioconductor-bearscc shpc-registry automated BioContainers addition for bioconductor-bearscc 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-beat shpc-registry automated BioContainers addition for bioconductor-beat
GITHUB quay.io/biocontainers/bioconductor-beclear shpc-registry automated BioContainers addition for bioconductor-beclear x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-beer singularity registry hpc automated addition for bioconductor-beer jags, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-benchdamic shpc-registry automated BioContainers addition for bioconductor-benchdamic
GITHUB quay.io/biocontainers/bioconductor-benchmarkfdrdata2019 shpc-registry automated BioContainers addition for bioconductor-benchmarkfdrdata2019
GITHUB quay.io/biocontainers/bioconductor-beta7 shpc-registry automated BioContainers addition for bioconductor-beta7
GITHUB quay.io/biocontainers/bioconductor-bgafun shpc-registry automated BioContainers addition for bioconductor-bgafun 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-bgeecall shpc-registry automated BioContainers addition for bioconductor-bgeecall x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-bgeedb shpc-registry automated BioContainers addition for bioconductor-bgeedb wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-bgmix shpc-registry automated BioContainers addition for bioconductor-bgmix
GITHUB quay.io/biocontainers/bioconductor-bgx shpc-registry automated BioContainers addition for bioconductor-bgx
GITHUB quay.io/biocontainers/bioconductor-bhc shpc-registry automated BioContainers addition for bioconductor-bhc
GITHUB quay.io/biocontainers/bioconductor-bicare shpc-registry automated BioContainers addition for bioconductor-bicare
GITHUB quay.io/biocontainers/bioconductor-bifet shpc-registry automated BioContainers addition for bioconductor-bifet 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-biggr shpc-registry automated BioContainers addition for bioconductor-biggr diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts
GITHUB quay.io/biocontainers/bioconductor-bigmelon shpc-registry automated BioContainers addition for bioconductor-bigmelon wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-bigmemoryextras shpc-registry automated BioContainers addition for bioconductor-bigmemoryextras x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-bigpint shpc-registry automated BioContainers addition for bioconductor-bigpint x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-bindingsitefinder shpc-registry automated BioContainers addition for bioconductor-bindingsitefinder
GITHUB quay.io/biocontainers/bioconductor-bioassayr shpc-registry automated BioContainers addition for bioconductor-bioassayr rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders
GITHUB quay.io/biocontainers/bioconductor-biobase shpc-registry automated BioContainers addition for bioconductor-biobase
GITHUB quay.io/biocontainers/bioconductor-biobroom shpc-registry automated BioContainers addition for bioconductor-biobroom
GITHUB quay.io/biocontainers/bioconductor-biobtreer shpc-registry automated BioContainers addition for bioconductor-biobtreer
GITHUB quay.io/biocontainers/bioconductor-biocancer shpc-registry automated BioContainers addition for bioconductor-biocancer pandoc
GITHUB quay.io/biocontainers/bioconductor-biocbaseutils singularity registry hpc automated addition for bioconductor-biocbaseutils
GITHUB quay.io/biocontainers/bioconductor-bioccasestudies shpc-registry automated BioContainers addition for bioconductor-bioccasestudies x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-bioccheck shpc-registry automated BioContainers addition for bioconductor-bioccheck
GITHUB quay.io/biocontainers/bioconductor-biocdockermanager shpc-registry automated BioContainers addition for bioconductor-biocdockermanager
GITHUB quay.io/biocontainers/bioconductor-biocfhir singularity registry hpc automated addition for bioconductor-biocfhir glpsol
GITHUB quay.io/biocontainers/bioconductor-biocfilecache shpc-registry automated BioContainers addition for bioconductor-biocfilecache
GITHUB quay.io/biocontainers/bioconductor-biocgenerics shpc-registry automated BioContainers addition for bioconductor-biocgenerics
GITHUB quay.io/biocontainers/bioconductor-biocgraph shpc-registry automated BioContainers addition for bioconductor-biocgraph
GITHUB quay.io/biocontainers/bioconductor-biocinstaller shpc-registry automated BioContainers addition for bioconductor-biocinstaller c89, c99
GITHUB quay.io/biocontainers/bioconductor-biocio shpc-registry automated BioContainers addition for bioconductor-biocio
GITHUB quay.io/biocontainers/bioconductor-biocneighbors shpc-registry automated BioContainers addition for bioconductor-biocneighbors x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-bioconcotk shpc-registry automated BioContainers addition for bioconductor-bioconcotk 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-biocor shpc-registry automated BioContainers addition for bioconductor-biocor gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-biocparallel shpc-registry automated BioContainers addition for bioconductor-biocparallel uconv, tclsh8.5, wish8.5, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-biocpkgtools shpc-registry automated BioContainers addition for bioconductor-biocpkgtools x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-biocset shpc-registry automated BioContainers addition for bioconductor-biocset
GITHUB quay.io/biocontainers/bioconductor-biocsingular shpc-registry automated BioContainers addition for bioconductor-biocsingular x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-biocsklearn shpc-registry automated BioContainers addition for bioconductor-biocsklearn f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, h5clear
GITHUB quay.io/biocontainers/bioconductor-biocstyle shpc-registry automated BioContainers addition for bioconductor-biocstyle pandoc-citeproc, pandoc
GITHUB quay.io/biocontainers/bioconductor-biocthis shpc-registry automated BioContainers addition for bioconductor-biocthis
GITHUB quay.io/biocontainers/bioconductor-biocversion shpc-registry automated BioContainers addition for bioconductor-biocversion gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-biocviews shpc-registry automated BioContainers addition for bioconductor-biocviews
GITHUB quay.io/biocontainers/bioconductor-biocworkflowtools shpc-registry automated BioContainers addition for bioconductor-biocworkflowtools pandoc-citeproc, pandoc, c89, c99
GITHUB quay.io/biocontainers/bioconductor-biodb shpc-registry automated BioContainers addition for bioconductor-biodb
GITHUB quay.io/biocontainers/bioconductor-biodbchebi shpc-registry automated BioContainers addition for bioconductor-biodbchebi
GITHUB quay.io/biocontainers/bioconductor-biodbexpasy singularity registry hpc automated addition for bioconductor-biodbexpasy
GITHUB quay.io/biocontainers/bioconductor-biodbhmdb shpc-registry automated BioContainers addition for bioconductor-biodbhmdb
GITHUB quay.io/biocontainers/bioconductor-biodbkegg shpc-registry automated BioContainers addition for bioconductor-biodbkegg
GITHUB quay.io/biocontainers/bioconductor-biodblipidmaps shpc-registry automated BioContainers addition for bioconductor-biodblipidmaps
GITHUB quay.io/biocontainers/bioconductor-biodbmirbase singularity registry hpc automated addition for bioconductor-biodbmirbase
GITHUB quay.io/biocontainers/bioconductor-biodbncbi singularity registry hpc automated addition for bioconductor-biodbncbi
GITHUB quay.io/biocontainers/bioconductor-biodbnci singularity registry hpc automated addition for bioconductor-biodbnci
GITHUB quay.io/biocontainers/bioconductor-biodbuniprot shpc-registry automated BioContainers addition for bioconductor-biodbuniprot
GITHUB quay.io/biocontainers/bioconductor-biodist shpc-registry automated BioContainers addition for bioconductor-biodist
GITHUB quay.io/biocontainers/bioconductor-bioimagedbs shpc-registry automated BioContainers addition for bioconductor-bioimagedbs SvtAv1DecApp, SvtAv1EncApp, aomdec, aomenc, asn1Coding, asn1Decoding, asn1Parser, ffmpeg, ffprobe, h264dec, h264enc, lame, p11-kit, p11tool, trust, vpxdec, vpxenc, x264, x265, pandoc-server, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv
GITHUB quay.io/biocontainers/bioconductor-biomart shpc-registry automated BioContainers addition for bioconductor-biomart
GITHUB quay.io/biocontainers/bioconductor-biomformat shpc-registry automated BioContainers addition for bioconductor-biomformat
GITHUB quay.io/biocontainers/bioconductor-biomm shpc-registry automated BioContainers addition for bioconductor-biomm jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bioconductor-biomvcclass shpc-registry automated BioContainers addition for bioconductor-biomvcclass
GITHUB quay.io/biocontainers/bioconductor-biomvrcns shpc-registry automated BioContainers addition for bioconductor-biomvrcns
GITHUB quay.io/biocontainers/bioconductor-bionar singularity registry hpc automated addition for bioconductor-bionar installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-bionero shpc-registry automated BioContainers addition for bioconductor-bionero
GITHUB quay.io/biocontainers/bioconductor-bionet shpc-registry automated BioContainers addition for bioconductor-bionet
GITHUB quay.io/biocontainers/bioconductor-bionetstat shpc-registry automated BioContainers addition for bioconductor-bionetstat 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-bioplex shpc-registry automated BioContainers addition for bioconductor-bioplex
GITHUB quay.io/biocontainers/bioconductor-bioqc shpc-registry automated BioContainers addition for bioconductor-bioqc ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-bioseqclass shpc-registry automated BioContainers addition for bioconductor-bioseqclass 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-biosigner shpc-registry automated BioContainers addition for bioconductor-biosigner
GITHUB quay.io/biocontainers/bioconductor-biostrings shpc-registry automated BioContainers addition for bioconductor-biostrings
GITHUB quay.io/biocontainers/bioconductor-biosvd shpc-registry automated BioContainers addition for bioconductor-biosvd 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-biotip shpc-registry automated BioContainers addition for bioconductor-biotip
GITHUB quay.io/biocontainers/bioconductor-biotmle shpc-registry automated BioContainers addition for bioconductor-biotmle gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-biotmledata shpc-registry automated BioContainers addition for bioconductor-biotmledata gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-biovizbase shpc-registry automated BioContainers addition for bioconductor-biovizbase
GITHUB quay.io/biocontainers/bioconductor-birewire shpc-registry automated BioContainers addition for bioconductor-birewire glpsol
GITHUB quay.io/biocontainers/bioconductor-birta shpc-registry automated BioContainers addition for bioconductor-birta 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-birte shpc-registry automated BioContainers addition for bioconductor-birte c89, c99
GITHUB quay.io/biocontainers/bioconductor-biscuiteer shpc-registry automated BioContainers addition for bioconductor-biscuiteer
GITHUB quay.io/biocontainers/bioconductor-biscuiteerdata shpc-registry automated BioContainers addition for bioconductor-biscuiteerdata
GITHUB quay.io/biocontainers/bioconductor-biseq shpc-registry automated BioContainers addition for bioconductor-biseq
GITHUB quay.io/biocontainers/bioconductor-bitseq shpc-registry automated BioContainers addition for bioconductor-bitseq
GITHUB quay.io/biocontainers/bioconductor-blacksheepr shpc-registry automated BioContainers addition for bioconductor-blacksheepr
GITHUB quay.io/biocontainers/bioconductor-bladderbatch shpc-registry automated BioContainers addition for bioconductor-bladderbatch
GITHUB quay.io/biocontainers/bioconductor-blima shpc-registry automated BioContainers addition for bioconductor-blima
GITHUB quay.io/biocontainers/bioconductor-blimatestingdata shpc-registry automated BioContainers addition for bioconductor-blimatestingdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-blma shpc-registry automated BioContainers addition for bioconductor-blma gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-bloodcancermultiomics2017 shpc-registry automated BioContainers addition for bioconductor-bloodcancermultiomics2017 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-bloodgen3module shpc-registry automated BioContainers addition for bioconductor-bloodgen3module x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-bluster shpc-registry automated BioContainers addition for bioconductor-bluster glpsol
GITHUB quay.io/biocontainers/bioconductor-bnbc shpc-registry automated BioContainers addition for bioconductor-bnbc mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, mpifort, mpic++, mpicc
GITHUB quay.io/biocontainers/bioconductor-bnem shpc-registry automated BioContainers addition for bioconductor-bnem diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts
GITHUB quay.io/biocontainers/bioconductor-bobafit singularity registry hpc automated addition for bioconductor-bobafit installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-bodymaprat shpc-registry automated BioContainers addition for bioconductor-bodymaprat x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-borealis singularity registry hpc automated addition for bioconductor-borealis installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-bovine.db shpc-registry automated BioContainers addition for bioconductor-bovine.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-bovine.db0 shpc-registry automated BioContainers addition for bioconductor-bovine.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-bovinecdf shpc-registry automated BioContainers addition for bioconductor-bovinecdf
GITHUB quay.io/biocontainers/bioconductor-bovineprobe shpc-registry automated BioContainers addition for bioconductor-bovineprobe
GITHUB quay.io/biocontainers/bioconductor-bprmeth shpc-registry automated BioContainers addition for bioconductor-bprmeth pandoc-citeproc, pandoc, wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-brain shpc-registry automated BioContainers addition for bioconductor-brain
GITHUB quay.io/biocontainers/bioconductor-brainflowprobes shpc-registry automated BioContainers addition for bioconductor-brainflowprobes
GITHUB quay.io/biocontainers/bioconductor-brainimager shpc-registry automated BioContainers addition for bioconductor-brainimager gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-brainimagerdata shpc-registry automated BioContainers addition for bioconductor-brainimagerdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-brainsaber shpc-registry automated BioContainers addition for bioconductor-brainsaber
GITHUB quay.io/biocontainers/bioconductor-brainstars shpc-registry automated BioContainers addition for bioconductor-brainstars x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-branchpointer shpc-registry automated BioContainers addition for bioconductor-branchpointer wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-breakpointr shpc-registry automated BioContainers addition for bioconductor-breakpointr x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-breakpointrdata shpc-registry automated BioContainers addition for bioconductor-breakpointrdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-breastcancermainz shpc-registry automated BioContainers addition for bioconductor-breastcancermainz
GITHUB quay.io/biocontainers/bioconductor-breastcancernki shpc-registry automated BioContainers addition for bioconductor-breastcancernki
GITHUB quay.io/biocontainers/bioconductor-breastcancertransbig shpc-registry automated BioContainers addition for bioconductor-breastcancertransbig
GITHUB quay.io/biocontainers/bioconductor-breastcancerunt shpc-registry automated BioContainers addition for bioconductor-breastcancerunt
GITHUB quay.io/biocontainers/bioconductor-breastcancerupp shpc-registry automated BioContainers addition for bioconductor-breastcancerupp
GITHUB quay.io/biocontainers/bioconductor-breastcancervdx shpc-registry automated BioContainers addition for bioconductor-breastcancervdx
GITHUB quay.io/biocontainers/bioconductor-brendadb shpc-registry automated BioContainers addition for bioconductor-brendadb
GITHUB quay.io/biocontainers/bioconductor-brgedata shpc-registry automated BioContainers addition for bioconductor-brgedata gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-brgenomics shpc-registry automated BioContainers addition for bioconductor-brgenomics
GITHUB quay.io/biocontainers/bioconductor-bridge shpc-registry automated BioContainers addition for bioconductor-bridge
GITHUB quay.io/biocontainers/bioconductor-bridgedbr shpc-registry automated BioContainers addition for bioconductor-bridgedbr jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bioconductor-bronchialil13 shpc-registry automated BioContainers addition for bioconductor-bronchialil13
GITHUB quay.io/biocontainers/bioconductor-browserviz shpc-registry automated BioContainers addition for bioconductor-browserviz gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-browservizdemo shpc-registry automated BioContainers addition for bioconductor-browservizdemo
GITHUB quay.io/biocontainers/bioconductor-bsgenome shpc-registry automated BioContainers addition for bioconductor-bsgenome
GITHUB quay.io/biocontainers/bioconductor-bsseq shpc-registry automated BioContainers addition for bioconductor-bsseq
GITHUB quay.io/biocontainers/bioconductor-bsseqdata shpc-registry automated BioContainers addition for bioconductor-bsseqdata
GITHUB quay.io/biocontainers/bioconductor-bsubtiliscdf shpc-registry automated BioContainers addition for bioconductor-bsubtiliscdf
GITHUB quay.io/biocontainers/bioconductor-bsubtilisprobe shpc-registry automated BioContainers addition for bioconductor-bsubtilisprobe
GITHUB quay.io/biocontainers/bioconductor-bubbletree shpc-registry automated BioContainers addition for bioconductor-bubbletree pandoc-citeproc, pandoc, wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-bufferedmatrix shpc-registry automated BioContainers addition for bioconductor-bufferedmatrix
GITHUB quay.io/biocontainers/bioconductor-bufferedmatrixmethods shpc-registry automated BioContainers addition for bioconductor-bufferedmatrixmethods
GITHUB quay.io/biocontainers/bioconductor-bugsigdbr shpc-registry automated BioContainers addition for bioconductor-bugsigdbr
GITHUB quay.io/biocontainers/bioconductor-bumhmm shpc-registry automated BioContainers addition for bioconductor-bumhmm gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-bumphunter shpc-registry automated BioContainers addition for bioconductor-bumphunter
GITHUB quay.io/biocontainers/bioconductor-bumpymatrix shpc-registry automated BioContainers addition for bioconductor-bumpymatrix
GITHUB quay.io/biocontainers/bioconductor-bus shpc-registry automated BioContainers addition for bioconductor-bus
GITHUB quay.io/biocontainers/bioconductor-buscorrect shpc-registry automated BioContainers addition for bioconductor-buscorrect x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-busparse shpc-registry automated BioContainers addition for bioconductor-busparse
GITHUB quay.io/biocontainers/bioconductor-busseq shpc-registry automated BioContainers addition for bioconductor-busseq
GITHUB quay.io/biocontainers/bioconductor-caen shpc-registry automated BioContainers addition for bioconductor-caen
GITHUB quay.io/biocontainers/bioconductor-cafe shpc-registry automated BioContainers addition for bioconductor-cafe
GITHUB quay.io/biocontainers/bioconductor-cagefightr shpc-registry automated BioContainers addition for bioconductor-cagefightr 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cageminer shpc-registry automated BioContainers addition for bioconductor-cageminer
GITHUB quay.io/biocontainers/bioconductor-cager shpc-registry automated BioContainers addition for bioconductor-cager
GITHUB quay.io/biocontainers/bioconductor-calib shpc-registry automated BioContainers addition for bioconductor-calib gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-calm shpc-registry automated BioContainers addition for bioconductor-calm
GITHUB quay.io/biocontainers/bioconductor-camera shpc-registry automated BioContainers addition for bioconductor-camera zipcmp, zipmerge, ziptool, gif2hdf, glpsol, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8
GITHUB quay.io/biocontainers/bioconductor-camthc shpc-registry automated BioContainers addition for bioconductor-camthc extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/bioconductor-cancerclass shpc-registry automated BioContainers addition for bioconductor-cancerclass
GITHUB quay.io/biocontainers/bioconductor-cancerdata shpc-registry automated BioContainers addition for bioconductor-cancerdata
GITHUB quay.io/biocontainers/bioconductor-cancerinsilico shpc-registry automated BioContainers addition for bioconductor-cancerinsilico 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cancermutationanalysis shpc-registry automated BioContainers addition for bioconductor-cancermutationanalysis x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-cancersubtypes shpc-registry automated BioContainers addition for bioconductor-cancersubtypes wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cand shpc-registry automated BioContainers addition for bioconductor-cand bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-canine.db shpc-registry automated BioContainers addition for bioconductor-canine.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-canine.db0 shpc-registry automated BioContainers addition for bioconductor-canine.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-canine2.db shpc-registry automated BioContainers addition for bioconductor-canine2.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-canine2cdf shpc-registry automated BioContainers addition for bioconductor-canine2cdf
GITHUB quay.io/biocontainers/bioconductor-canine2probe shpc-registry automated BioContainers addition for bioconductor-canine2probe
GITHUB quay.io/biocontainers/bioconductor-caninecdf shpc-registry automated BioContainers addition for bioconductor-caninecdf
GITHUB quay.io/biocontainers/bioconductor-canineprobe shpc-registry automated BioContainers addition for bioconductor-canineprobe
GITHUB quay.io/biocontainers/bioconductor-caomicsv shpc-registry automated BioContainers addition for bioconductor-caomicsv
GITHUB quay.io/biocontainers/bioconductor-cardelino singularity registry hpc automated addition for bioconductor-cardelino installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-cardinal shpc-registry automated BioContainers addition for bioconductor-cardinal fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-cardinalworkflows shpc-registry automated BioContainers addition for bioconductor-cardinalworkflows fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/bioconductor-carnival shpc-registry automated BioContainers addition for bioconductor-carnival pandoc
GITHUB quay.io/biocontainers/bioconductor-casper shpc-registry automated BioContainers addition for bioconductor-casper
GITHUB quay.io/biocontainers/bioconductor-catalyst shpc-registry automated BioContainers addition for bioconductor-catalyst gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-category shpc-registry automated BioContainers addition for bioconductor-category
GITHUB quay.io/biocontainers/bioconductor-categorycompare shpc-registry automated BioContainers addition for bioconductor-categorycompare Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage
GITHUB quay.io/biocontainers/bioconductor-causalr shpc-registry automated BioContainers addition for bioconductor-causalr bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-cbaf shpc-registry automated BioContainers addition for bioconductor-cbaf extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/bioconductor-cbea singularity registry hpc automated addition for bioconductor-cbea installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-cbioportaldata shpc-registry automated BioContainers addition for bioconductor-cbioportaldata
GITHUB quay.io/biocontainers/bioconductor-cbpmanager shpc-registry automated BioContainers addition for bioconductor-cbpmanager pandoc
GITHUB quay.io/biocontainers/bioconductor-ccdata shpc-registry automated BioContainers addition for bioconductor-ccdata wget
GITHUB quay.io/biocontainers/bioconductor-ccfindr shpc-registry automated BioContainers addition for bioconductor-ccfindr aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info, opal_wrapper, orte-clean, orte-info, orte-server
GITHUB quay.io/biocontainers/bioconductor-ccimpute singularity registry hpc automated addition for bioconductor-ccimpute
GITHUB quay.io/biocontainers/bioconductor-ccl4 shpc-registry automated BioContainers addition for bioconductor-ccl4
GITHUB quay.io/biocontainers/bioconductor-ccmap shpc-registry automated BioContainers addition for bioconductor-ccmap xgboost, wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ccpromise shpc-registry automated BioContainers addition for bioconductor-ccpromise c89, c99
GITHUB quay.io/biocontainers/bioconductor-ccrepe shpc-registry automated BioContainers addition for bioconductor-ccrepe
GITHUB quay.io/biocontainers/bioconductor-cctutorial shpc-registry automated BioContainers addition for bioconductor-cctutorial
GITHUB quay.io/biocontainers/bioconductor-celaref shpc-registry automated BioContainers addition for bioconductor-celaref x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-celarefdata shpc-registry automated BioContainers addition for bioconductor-celarefdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-celda shpc-registry automated BioContainers addition for bioconductor-celda x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify
GITHUB quay.io/biocontainers/bioconductor-celegans.db shpc-registry automated BioContainers addition for bioconductor-celegans.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-celeganscdf shpc-registry automated BioContainers addition for bioconductor-celeganscdf
GITHUB quay.io/biocontainers/bioconductor-celegansprobe shpc-registry automated BioContainers addition for bioconductor-celegansprobe
GITHUB quay.io/biocontainers/bioconductor-cellarepertorium shpc-registry automated BioContainers addition for bioconductor-cellarepertorium
GITHUB quay.io/biocontainers/bioconductor-cellbarcode shpc-registry automated BioContainers addition for bioconductor-cellbarcode
GITHUB quay.io/biocontainers/bioconductor-cellbaser shpc-registry automated BioContainers addition for bioconductor-cellbaser gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cellbench shpc-registry automated BioContainers addition for bioconductor-cellbench x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-celldex shpc-registry automated BioContainers addition for bioconductor-celldex
GITHUB quay.io/biocontainers/bioconductor-cellgrowth shpc-registry automated BioContainers addition for bioconductor-cellgrowth gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cellhts2 shpc-registry automated BioContainers addition for bioconductor-cellhts2 x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-cellid shpc-registry automated BioContainers addition for bioconductor-cellid geosop, geos-config, glpsol
GITHUB quay.io/biocontainers/bioconductor-cellity shpc-registry automated BioContainers addition for bioconductor-cellity
GITHUB quay.io/biocontainers/bioconductor-cellmapper shpc-registry automated BioContainers addition for bioconductor-cellmapper
GITHUB quay.io/biocontainers/bioconductor-cellmapperdata shpc-registry automated BioContainers addition for bioconductor-cellmapperdata wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cellmigration shpc-registry automated BioContainers addition for bioconductor-cellmigration
GITHUB quay.io/biocontainers/bioconductor-cellmixs shpc-registry automated BioContainers addition for bioconductor-cellmixs x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-cellnoptr shpc-registry automated BioContainers addition for bioconductor-cellnoptr diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts
GITHUB quay.io/biocontainers/bioconductor-cellscape shpc-registry automated BioContainers addition for bioconductor-cellscape gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cellscore shpc-registry automated BioContainers addition for bioconductor-cellscore 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-celltrails shpc-registry automated BioContainers addition for bioconductor-celltrails x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-celltree shpc-registry automated BioContainers addition for bioconductor-celltree
GITHUB quay.io/biocontainers/bioconductor-cellxgenedp singularity registry hpc automated addition for bioconductor-cellxgenedp
GITHUB quay.io/biocontainers/bioconductor-cemitool shpc-registry automated BioContainers addition for bioconductor-cemitool pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-censcyt shpc-registry automated BioContainers addition for bioconductor-censcyt
GITHUB quay.io/biocontainers/bioconductor-cepo shpc-registry automated BioContainers addition for bioconductor-cepo
GITHUB quay.io/biocontainers/bioconductor-cernanetsim shpc-registry automated BioContainers addition for bioconductor-cernanetsim
GITHUB quay.io/biocontainers/bioconductor-cetf shpc-registry automated BioContainers addition for bioconductor-cetf Cytoscape, cytoscape.sh, gen_vmoptions.sh, jpackage, curve_keygen, cups-config, ippeveprinter, ipptool, glpsol, f2py3.10
GITHUB quay.io/biocontainers/bioconductor-ceu1kg shpc-registry automated BioContainers addition for bioconductor-ceu1kg 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ceu1kgv shpc-registry automated BioContainers addition for bioconductor-ceu1kgv x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-ceuhm3 shpc-registry automated BioContainers addition for bioconductor-ceuhm3 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cexor shpc-registry automated BioContainers addition for bioconductor-cexor pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-cfassay shpc-registry automated BioContainers addition for bioconductor-cfassay
GITHUB quay.io/biocontainers/bioconductor-cfdnapro shpc-registry automated BioContainers addition for bioconductor-cfdnapro
GITHUB quay.io/biocontainers/bioconductor-cgdv17 shpc-registry automated BioContainers addition for bioconductor-cgdv17 x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-cgen shpc-registry automated BioContainers addition for bioconductor-cgen
GITHUB quay.io/biocontainers/bioconductor-cghbase shpc-registry automated BioContainers addition for bioconductor-cghbase
GITHUB quay.io/biocontainers/bioconductor-cghcall shpc-registry automated BioContainers addition for bioconductor-cghcall
GITHUB quay.io/biocontainers/bioconductor-cghmcr shpc-registry automated BioContainers addition for bioconductor-cghmcr
GITHUB quay.io/biocontainers/bioconductor-cghnormaliter shpc-registry automated BioContainers addition for bioconductor-cghnormaliter
GITHUB quay.io/biocontainers/bioconductor-cghregions shpc-registry automated BioContainers addition for bioconductor-cghregions
GITHUB quay.io/biocontainers/bioconductor-champ shpc-registry automated BioContainers addition for bioconductor-champ pandoc, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-champdata shpc-registry automated BioContainers addition for bioconductor-champdata
GITHUB quay.io/biocontainers/bioconductor-charge shpc-registry automated BioContainers addition for bioconductor-charge 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-charm shpc-registry automated BioContainers addition for bioconductor-charm wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-charmdata shpc-registry automated BioContainers addition for bioconductor-charmdata wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chemminedrugs shpc-registry automated BioContainers addition for bioconductor-chemminedrugs rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders
GITHUB quay.io/biocontainers/bioconductor-chemmineob singularity registry hpc automated addition for bioconductor-chemmineob 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, obfitall, obmm, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop, obrms, obrotamer, obrotate, obspectrophore, obsym, obtautomer, obthermo, roundtrip, python3.1
GITHUB quay.io/biocontainers/bioconductor-chemminer shpc-registry automated BioContainers addition for bioconductor-chemminer rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders
GITHUB quay.io/biocontainers/bioconductor-chetah shpc-registry automated BioContainers addition for bioconductor-chetah
GITHUB quay.io/biocontainers/bioconductor-chic.data shpc-registry automated BioContainers addition for bioconductor-chic.data x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-chic shpc-registry automated BioContainers addition for bioconductor-chic 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chicago shpc-registry automated BioContainers addition for bioconductor-chicago
GITHUB quay.io/biocontainers/bioconductor-chicken.db shpc-registry automated BioContainers addition for bioconductor-chicken.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-chicken.db0 shpc-registry automated BioContainers addition for bioconductor-chicken.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chickencdf shpc-registry automated BioContainers addition for bioconductor-chickencdf
GITHUB quay.io/biocontainers/bioconductor-chickenprobe shpc-registry automated BioContainers addition for bioconductor-chickenprobe
GITHUB quay.io/biocontainers/bioconductor-chimera shpc-registry automated BioContainers addition for bioconductor-chimera STAR, STARlong, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-chimeraviz shpc-registry automated BioContainers addition for bioconductor-chimeraviz pandoc-citeproc, pandoc, wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chimp.db0 shpc-registry automated BioContainers addition for bioconductor-chimp.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chimphumanbraindata shpc-registry automated BioContainers addition for bioconductor-chimphumanbraindata
GITHUB quay.io/biocontainers/bioconductor-chipanalyser shpc-registry automated BioContainers addition for bioconductor-chipanalyser gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chipcomp shpc-registry automated BioContainers addition for bioconductor-chipcomp wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-chipenrich.data shpc-registry automated BioContainers addition for bioconductor-chipenrich.data gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chipenrich shpc-registry automated BioContainers addition for bioconductor-chipenrich gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chipexoqual shpc-registry automated BioContainers addition for bioconductor-chipexoqual pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chipexoqualexample shpc-registry automated BioContainers addition for bioconductor-chipexoqualexample gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chippeakanno shpc-registry automated BioContainers addition for bioconductor-chippeakanno
GITHUB quay.io/biocontainers/bioconductor-chipqc shpc-registry automated BioContainers addition for bioconductor-chipqc
GITHUB quay.io/biocontainers/bioconductor-chipseeker shpc-registry automated BioContainers addition for bioconductor-chipseeker pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-chipseq shpc-registry automated BioContainers addition for bioconductor-chipseq
GITHUB quay.io/biocontainers/bioconductor-chipseqdbdata shpc-registry automated BioContainers addition for bioconductor-chipseqdbdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-chipseqr shpc-registry automated BioContainers addition for bioconductor-chipseqr
GITHUB quay.io/biocontainers/bioconductor-chipseqspike shpc-registry automated BioContainers addition for bioconductor-chipseqspike x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-chipsim shpc-registry automated BioContainers addition for bioconductor-chipsim
GITHUB quay.io/biocontainers/bioconductor-chipxpress shpc-registry automated BioContainers addition for bioconductor-chipxpress
GITHUB quay.io/biocontainers/bioconductor-chipxpressdata shpc-registry automated BioContainers addition for bioconductor-chipxpressdata
GITHUB quay.io/biocontainers/bioconductor-chopsticks shpc-registry automated BioContainers addition for bioconductor-chopsticks
GITHUB quay.io/biocontainers/bioconductor-chrogps shpc-registry automated BioContainers addition for bioconductor-chrogps gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chromdraw shpc-registry automated BioContainers addition for bioconductor-chromdraw wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-chromheatmap shpc-registry automated BioContainers addition for bioconductor-chromheatmap
GITHUB quay.io/biocontainers/bioconductor-chromhmmdata shpc-registry automated BioContainers addition for bioconductor-chromhmmdata
GITHUB quay.io/biocontainers/bioconductor-chromplot shpc-registry automated BioContainers addition for bioconductor-chromplot wget
GITHUB quay.io/biocontainers/bioconductor-chromscape shpc-registry automated BioContainers addition for bioconductor-chromscape pandoc-server, glpsol, pandoc
GITHUB quay.io/biocontainers/bioconductor-chromstar shpc-registry automated BioContainers addition for bioconductor-chromstar wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chromstardata shpc-registry automated BioContainers addition for bioconductor-chromstardata wget
GITHUB quay.io/biocontainers/bioconductor-chromswitch shpc-registry automated BioContainers addition for bioconductor-chromswitch gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chromvar shpc-registry automated BioContainers addition for bioconductor-chromvar gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chronos shpc-registry automated BioContainers addition for bioconductor-chronos
GITHUB quay.io/biocontainers/bioconductor-cicero shpc-registry automated BioContainers addition for bioconductor-cicero x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-cimice shpc-registry automated BioContainers addition for bioconductor-cimice
GITHUB quay.io/biocontainers/bioconductor-cindex shpc-registry automated BioContainers addition for bioconductor-cindex wget
GITHUB quay.io/biocontainers/bioconductor-circrnaprofiler shpc-registry automated BioContainers addition for bioconductor-circrnaprofiler
GITHUB quay.io/biocontainers/bioconductor-circseqaligntk singularity registry hpc automated addition for bioconductor-circseqaligntk installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-cispath shpc-registry automated BioContainers addition for bioconductor-cispath
GITHUB quay.io/biocontainers/bioconductor-citefuse shpc-registry automated BioContainers addition for bioconductor-citefuse
GITHUB quay.io/biocontainers/bioconductor-citruscdf shpc-registry automated BioContainers addition for bioconductor-citruscdf
GITHUB quay.io/biocontainers/bioconductor-citrusprobe shpc-registry automated BioContainers addition for bioconductor-citrusprobe
GITHUB quay.io/biocontainers/bioconductor-clariomdhumanprobeset.db shpc-registry automated BioContainers addition for bioconductor-clariomdhumanprobeset.db
GITHUB quay.io/biocontainers/bioconductor-clariomdhumantranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-clariomdhumantranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-clariomshumantranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-clariomshumantranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-clariomsmousetranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-clariomsmousetranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-clariomsrathttranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-clariomsrathttranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-clariomsrattranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-clariomsrattranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-classifyr shpc-registry automated BioContainers addition for bioconductor-classifyr 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cleanupdtseq shpc-registry automated BioContainers addition for bioconductor-cleanupdtseq
GITHUB quay.io/biocontainers/bioconductor-cleaver shpc-registry automated BioContainers addition for bioconductor-cleaver
GITHUB quay.io/biocontainers/bioconductor-clippda shpc-registry automated BioContainers addition for bioconductor-clippda
GITHUB quay.io/biocontainers/bioconductor-clipper shpc-registry automated BioContainers addition for bioconductor-clipper glpsol
GITHUB quay.io/biocontainers/bioconductor-cliprofiler shpc-registry automated BioContainers addition for bioconductor-cliprofiler
GITHUB quay.io/biocontainers/bioconductor-cliquems shpc-registry automated BioContainers addition for bioconductor-cliquems zipcmp, zipmerge, ziptool, gif2hdf, glpsol, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8
GITHUB quay.io/biocontainers/bioconductor-cll shpc-registry automated BioContainers addition for bioconductor-cll
GITHUB quay.io/biocontainers/bioconductor-cllmethylation shpc-registry automated BioContainers addition for bioconductor-cllmethylation 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-clomial shpc-registry automated BioContainers addition for bioconductor-clomial
GITHUB quay.io/biocontainers/bioconductor-clonality shpc-registry automated BioContainers addition for bioconductor-clonality
GITHUB quay.io/biocontainers/bioconductor-clonotyper shpc-registry automated BioContainers addition for bioconductor-clonotyper
GITHUB quay.io/biocontainers/bioconductor-clst shpc-registry automated BioContainers addition for bioconductor-clst
GITHUB quay.io/biocontainers/bioconductor-clstutils shpc-registry automated BioContainers addition for bioconductor-clstutils
GITHUB quay.io/biocontainers/bioconductor-clumsid shpc-registry automated BioContainers addition for bioconductor-clumsid zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-clumsiddata shpc-registry automated BioContainers addition for bioconductor-clumsiddata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-clustcomp shpc-registry automated BioContainers addition for bioconductor-clustcomp
GITHUB quay.io/biocontainers/bioconductor-clusterexperiment shpc-registry automated BioContainers addition for bioconductor-clusterexperiment f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-clusterjudge shpc-registry automated BioContainers addition for bioconductor-clusterjudge gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-clusterprofiler shpc-registry automated BioContainers addition for bioconductor-clusterprofiler
GITHUB quay.io/biocontainers/bioconductor-clusterseq shpc-registry automated BioContainers addition for bioconductor-clusterseq gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-clustersignificance shpc-registry automated BioContainers addition for bioconductor-clustersignificance
GITHUB quay.io/biocontainers/bioconductor-clusterstab shpc-registry automated BioContainers addition for bioconductor-clusterstab
GITHUB quay.io/biocontainers/bioconductor-clustifyr shpc-registry automated BioContainers addition for bioconductor-clustifyr
GITHUB quay.io/biocontainers/bioconductor-clustifyrdatahub shpc-registry automated BioContainers addition for bioconductor-clustifyrdatahub
GITHUB quay.io/biocontainers/bioconductor-cma shpc-registry automated BioContainers addition for bioconductor-cma
GITHUB quay.io/biocontainers/bioconductor-cmap shpc-registry automated BioContainers addition for bioconductor-cmap x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-cmap2data shpc-registry automated BioContainers addition for bioconductor-cmap2data
GITHUB quay.io/biocontainers/bioconductor-cmapr shpc-registry automated BioContainers addition for bioconductor-cmapr
GITHUB quay.io/biocontainers/bioconductor-cn.farms shpc-registry automated BioContainers addition for bioconductor-cn.farms
GITHUB quay.io/biocontainers/bioconductor-cn.mops shpc-registry automated BioContainers addition for bioconductor-cn.mops
GITHUB quay.io/biocontainers/bioconductor-cnanorm shpc-registry automated BioContainers addition for bioconductor-cnanorm
GITHUB quay.io/biocontainers/bioconductor-cner shpc-registry automated BioContainers addition for bioconductor-cner
GITHUB quay.io/biocontainers/bioconductor-cnordt shpc-registry automated BioContainers addition for bioconductor-cnordt diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts
GITHUB quay.io/biocontainers/bioconductor-cnorfeeder shpc-registry automated BioContainers addition for bioconductor-cnorfeeder diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts
GITHUB quay.io/biocontainers/bioconductor-cnorfuzzy shpc-registry automated BioContainers addition for bioconductor-cnorfuzzy diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts
GITHUB quay.io/biocontainers/bioconductor-cnorode shpc-registry automated BioContainers addition for bioconductor-cnorode diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts
GITHUB quay.io/biocontainers/bioconductor-cnpbayes shpc-registry automated BioContainers addition for bioconductor-cnpbayes gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cntools shpc-registry automated BioContainers addition for bioconductor-cntools
GITHUB quay.io/biocontainers/bioconductor-cnvfilter shpc-registry automated BioContainers addition for bioconductor-cnvfilter
GITHUB quay.io/biocontainers/bioconductor-cnvgears shpc-registry automated BioContainers addition for bioconductor-cnvgears
GITHUB quay.io/biocontainers/bioconductor-cnvgsa shpc-registry automated BioContainers addition for bioconductor-cnvgsa
GITHUB quay.io/biocontainers/bioconductor-cnvgsadata shpc-registry automated BioContainers addition for bioconductor-cnvgsadata
GITHUB quay.io/biocontainers/bioconductor-cnviz shpc-registry automated BioContainers addition for bioconductor-cnviz
GITHUB quay.io/biocontainers/bioconductor-cnvmetrics singularity registry hpc automated addition for bioconductor-cnvmetrics installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-cnvpanelizer shpc-registry automated BioContainers addition for bioconductor-cnvpanelizer wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-cnvranger shpc-registry automated BioContainers addition for bioconductor-cnvranger x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-cnvrd2 shpc-registry automated BioContainers addition for bioconductor-cnvrd2 jags
GITHUB quay.io/biocontainers/bioconductor-cnvtools shpc-registry automated BioContainers addition for bioconductor-cnvtools 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cobindr shpc-registry automated BioContainers addition for bioconductor-cobindr 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cocitestats shpc-registry automated BioContainers addition for bioconductor-cocitestats
GITHUB quay.io/biocontainers/bioconductor-cocoa shpc-registry automated BioContainers addition for bioconductor-cocoa
GITHUB quay.io/biocontainers/bioconductor-codelink shpc-registry automated BioContainers addition for bioconductor-codelink
GITHUB quay.io/biocontainers/bioconductor-codex shpc-registry automated BioContainers addition for bioconductor-codex tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-coexnet shpc-registry automated BioContainers addition for bioconductor-coexnet pandoc-citeproc, pandoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cogaps shpc-registry automated BioContainers addition for bioconductor-cogaps 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cogena shpc-registry automated BioContainers addition for bioconductor-cogena
GITHUB quay.io/biocontainers/bioconductor-cogeqc singularity registry hpc automated addition for bioconductor-cogeqc installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-cogito shpc-registry automated BioContainers addition for bioconductor-cogito pandoc
GITHUB quay.io/biocontainers/bioconductor-cogps shpc-registry automated BioContainers addition for bioconductor-cogps
GITHUB quay.io/biocontainers/bioconductor-cohcap shpc-registry automated BioContainers addition for bioconductor-cohcap perl5.32.1, streamzip
GITHUB quay.io/biocontainers/bioconductor-cohcapanno shpc-registry automated BioContainers addition for bioconductor-cohcapanno
GITHUB quay.io/biocontainers/bioconductor-cola shpc-registry automated BioContainers addition for bioconductor-cola
GITHUB quay.io/biocontainers/bioconductor-colonca shpc-registry automated BioContainers addition for bioconductor-colonca
GITHUB quay.io/biocontainers/bioconductor-comapr singularity registry hpc automated addition for bioconductor-comapr installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-combi shpc-registry automated BioContainers addition for bioconductor-combi
GITHUB quay.io/biocontainers/bioconductor-comet shpc-registry automated BioContainers addition for bioconductor-comet
GITHUB quay.io/biocontainers/bioconductor-comethdmr singularity registry hpc automated addition for bioconductor-comethdmr installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-compartmap shpc-registry automated BioContainers addition for bioconductor-compartmap f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-compass shpc-registry automated BioContainers addition for bioconductor-compass pandoc-server, pandoc
GITHUB quay.io/biocontainers/bioconductor-compcoder shpc-registry automated BioContainers addition for bioconductor-compcoder
GITHUB quay.io/biocontainers/bioconductor-compepitools shpc-registry automated BioContainers addition for bioconductor-compepitools
GITHUB quay.io/biocontainers/bioconductor-compgo shpc-registry automated BioContainers addition for bioconductor-compgo jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bioconductor-complexheatmap shpc-registry automated BioContainers addition for bioconductor-complexheatmap x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-compounddb singularity registry hpc automated addition for bioconductor-compounddb installBiocDataPackage.sh, tomlq, xq, yq, rsvg-convert, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-compran shpc-registry automated BioContainers addition for bioconductor-compran
GITHUB quay.io/biocontainers/bioconductor-conclus shpc-registry automated BioContainers addition for bioconductor-conclus
GITHUB quay.io/biocontainers/bioconductor-condcomp shpc-registry automated BioContainers addition for bioconductor-condcomp gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-condiments shpc-registry automated BioContainers addition for bioconductor-condiments
GITHUB quay.io/biocontainers/bioconductor-confess shpc-registry automated BioContainers addition for bioconductor-confess fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/bioconductor-confessdata shpc-registry automated BioContainers addition for bioconductor-confessdata
GITHUB quay.io/biocontainers/bioconductor-connectivitymap shpc-registry automated BioContainers addition for bioconductor-connectivitymap
GITHUB quay.io/biocontainers/bioconductor-consensus shpc-registry automated BioContainers addition for bioconductor-consensus x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-consensusclusterplus shpc-registry automated BioContainers addition for bioconductor-consensusclusterplus
GITHUB quay.io/biocontainers/bioconductor-consensusde shpc-registry automated BioContainers addition for bioconductor-consensusde 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin, c89, c99
GITHUB quay.io/biocontainers/bioconductor-consensusov shpc-registry automated BioContainers addition for bioconductor-consensusov gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-consensusseeker shpc-registry automated BioContainers addition for bioconductor-consensusseeker wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-consica singularity registry hpc automated addition for bioconductor-consica installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-constand shpc-registry automated BioContainers addition for bioconductor-constand
GITHUB quay.io/biocontainers/bioconductor-contibait shpc-registry automated BioContainers addition for bioconductor-contibait wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-conumee shpc-registry automated BioContainers addition for bioconductor-conumee x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-convert shpc-registry automated BioContainers addition for bioconductor-convert
GITHUB quay.io/biocontainers/bioconductor-copa shpc-registry automated BioContainers addition for bioconductor-copa
GITHUB quay.io/biocontainers/bioconductor-copdsexualdimorphism.data shpc-registry automated BioContainers addition for bioconductor-copdsexualdimorphism.data
GITHUB quay.io/biocontainers/bioconductor-copyhelper shpc-registry automated BioContainers addition for bioconductor-copyhelper
GITHUB quay.io/biocontainers/bioconductor-copyneutralima shpc-registry automated BioContainers addition for bioconductor-copyneutralima x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-copynumber shpc-registry automated BioContainers addition for bioconductor-copynumber
GITHUB quay.io/biocontainers/bioconductor-copynumberplots shpc-registry automated BioContainers addition for bioconductor-copynumberplots x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-copywriter shpc-registry automated BioContainers addition for bioconductor-copywriter
GITHUB quay.io/biocontainers/bioconductor-cordon shpc-registry automated BioContainers addition for bioconductor-cordon x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-coregflux shpc-registry automated BioContainers addition for bioconductor-coregflux glpsol, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-coregnet shpc-registry automated BioContainers addition for bioconductor-coregnet glpsol
GITHUB quay.io/biocontainers/bioconductor-coregx shpc-registry automated BioContainers addition for bioconductor-coregx
GITHUB quay.io/biocontainers/bioconductor-cormotif shpc-registry automated BioContainers addition for bioconductor-cormotif
GITHUB quay.io/biocontainers/bioconductor-cormut shpc-registry automated BioContainers addition for bioconductor-cormut 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-corral shpc-registry automated BioContainers addition for bioconductor-corral x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-correp shpc-registry automated BioContainers addition for bioconductor-correp
GITHUB quay.io/biocontainers/bioconductor-coseq shpc-registry automated BioContainers addition for bioconductor-coseq gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cosmic.67 shpc-registry automated BioContainers addition for bioconductor-cosmic.67
GITHUB quay.io/biocontainers/bioconductor-cosmiq shpc-registry automated BioContainers addition for bioconductor-cosmiq zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-cosmosr shpc-registry automated BioContainers addition for bioconductor-cosmosr pandoc
GITHUB quay.io/biocontainers/bioconductor-cosnet shpc-registry automated BioContainers addition for bioconductor-cosnet
GITHUB quay.io/biocontainers/bioconductor-cotan singularity registry hpc automated addition for bioconductor-cotan
GITHUB quay.io/biocontainers/bioconductor-cottoncdf shpc-registry automated BioContainers addition for bioconductor-cottoncdf
GITHUB quay.io/biocontainers/bioconductor-cottonprobe shpc-registry automated BioContainers addition for bioconductor-cottonprobe
GITHUB quay.io/biocontainers/bioconductor-countclust shpc-registry automated BioContainers addition for bioconductor-countclust
GITHUB quay.io/biocontainers/bioconductor-countsimqc shpc-registry automated BioContainers addition for bioconductor-countsimqc pandoc, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-coveb shpc-registry automated BioContainers addition for bioconductor-coveb gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-coverageview shpc-registry automated BioContainers addition for bioconductor-coverageview
GITHUB quay.io/biocontainers/bioconductor-covrna shpc-registry automated BioContainers addition for bioconductor-covrna c89, c99
GITHUB quay.io/biocontainers/bioconductor-cpvsnp shpc-registry automated BioContainers addition for bioconductor-cpvsnp
GITHUB quay.io/biocontainers/bioconductor-cqn shpc-registry automated BioContainers addition for bioconductor-cqn
GITHUB quay.io/biocontainers/bioconductor-crcl18 shpc-registry automated BioContainers addition for bioconductor-crcl18 x86_64-conda-linux-gnu-gfortran.bin, c89, c99
GITHUB quay.io/biocontainers/bioconductor-crimage shpc-registry automated BioContainers addition for bioconductor-crimage fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/bioconductor-crisprbase singularity registry hpc automated addition for bioconductor-crisprbase installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-crisprbowtie singularity registry hpc automated addition for bioconductor-crisprbowtie installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-crisprbwa singularity registry hpc automated addition for bioconductor-crisprbwa installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-crisprdesign singularity registry hpc automated addition for bioconductor-crisprdesign 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-crisprscore singularity registry hpc automated addition for bioconductor-crisprscore installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-crisprscoredata singularity registry hpc automated addition for bioconductor-crisprscoredata installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-crisprseek shpc-registry automated BioContainers addition for bioconductor-crisprseek
GITHUB quay.io/biocontainers/bioconductor-crisprseekplus shpc-registry automated BioContainers addition for bioconductor-crisprseekplus wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-crisprvariants shpc-registry automated BioContainers addition for bioconductor-crisprvariants wget
GITHUB quay.io/biocontainers/bioconductor-crisprverse singularity registry hpc automated addition for bioconductor-crisprverse 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-crisprviz singularity registry hpc automated addition for bioconductor-crisprviz 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-crlmm shpc-registry automated BioContainers addition for bioconductor-crlmm
GITHUB quay.io/biocontainers/bioconductor-crossicc shpc-registry automated BioContainers addition for bioconductor-crossicc 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-crossmeta shpc-registry automated BioContainers addition for bioconductor-crossmeta xgboost, pandoc-citeproc, pandoc, wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-csar shpc-registry automated BioContainers addition for bioconductor-csar
GITHUB quay.io/biocontainers/bioconductor-csaw shpc-registry automated BioContainers addition for bioconductor-csaw bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-csdr shpc-registry automated BioContainers addition for bioconductor-csdr
GITHUB quay.io/biocontainers/bioconductor-cssp shpc-registry automated BioContainers addition for bioconductor-cssp
GITHUB quay.io/biocontainers/bioconductor-cssq shpc-registry automated BioContainers addition for bioconductor-cssq
GITHUB quay.io/biocontainers/bioconductor-ctc shpc-registry automated BioContainers addition for bioconductor-ctc
GITHUB quay.io/biocontainers/bioconductor-ctcf shpc-registry automated BioContainers addition for bioconductor-ctcf
GITHUB quay.io/biocontainers/bioconductor-ctdquerier shpc-registry automated BioContainers addition for bioconductor-ctdquerier
GITHUB quay.io/biocontainers/bioconductor-ctggem shpc-registry automated BioContainers addition for bioconductor-ctggem
GITHUB quay.io/biocontainers/bioconductor-ctrap shpc-registry automated BioContainers addition for bioconductor-ctrap x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-ctsge shpc-registry automated BioContainers addition for bioconductor-ctsge gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ctsv singularity registry hpc automated addition for bioconductor-ctsv x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500
GITHUB quay.io/biocontainers/bioconductor-cummerbund shpc-registry automated BioContainers addition for bioconductor-cummerbund wget
GITHUB quay.io/biocontainers/bioconductor-curatedadipoarray shpc-registry automated BioContainers addition for bioconductor-curatedadipoarray
GITHUB quay.io/biocontainers/bioconductor-curatedadipochip shpc-registry automated BioContainers addition for bioconductor-curatedadipochip x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-curatedadiporna shpc-registry automated BioContainers addition for bioconductor-curatedadiporna