10679 container modules.
github container description aliases
GITHUB adminer Database management in a single PHP file.
GITHUB amazon/aws-cli The AWS Command Line Interface (AWS CLI) is a unified tool to manage your AWS services. aws, aws_completer
GITHUB amdih/cp2k CP2K is a quantum chemistry and solid state physics software package that can perform atomistic simulations of solid state, liquid, molecular, periodic, material, crystal, and biological systems. cp2k.popt, cp2k.psmp.dbcsr_gpu, cp2k_shell.psmp, graph.psmp, grid_unittest.psmp, memory_utilities_unittest.psmp, xyz2dcd.psmp, cp2k.psmp, cp2k.psmp.no_dbcsr_gpu, dumpdcd.psmp, grid_miniapp.psmp, libcp2k_unittest.psmp, parallel_rng_types_unittest.psmp
GITHUB amdih/gromacs GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. gmx
GITHUB amdih/lammps LAMMPS is a classical molecular dynamics code with a focus on materials modeling. It's an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. lmp
GITHUB amdih/namd NAMD is a molecular dynamics package designed for simulating the movement of biomolecules over time. charmrun, namd2
GITHUB amdih/namd3 NAMD is a molecular dynamics package designed for simulating the movement of biomolecules over time. charmrun, namd3
GITHUB amdih/pytorch PyTorch is a GPU accelerated tensor computational framework with a Python front end. python3, python
GITHUB bids/aa BIDS App containing an instance of the Automatic Analysis. (https://github.com/BIDS-Apps/aa)
GITHUB bids/baracus Brain-Age Regression Analysis and Computation Utility Software (https://github.com/BIDS-Apps/baracus)
GITHUB bids/brainiak-srm Shared Response Model (SRM) from the Brain Imaging Analysis Kit (BrainIAK) (https://github.com/BIDS-Apps/brainiak-srm)
GITHUB bids/brainsautoworkup A BIDS App for running BRAINSAutoWorkup (https://github.com/BIDS-Apps/BRAINSAutoworkup)
GITHUB bids/broccoli BROCCOLI is a software for analysis of fMRI (functional magnetic resonance imaging) data and is written in OpenCL (Open Computing Language). (https://github.com/BIDS-Apps/BROCCOLI)
GITHUB bids/freesurfer Surface reconstruction using Freesurfer
GITHUB bids/hcppipelines BIDS-ified HPC Piplines to process MRI data for the Human Connectome Project (https://github.com/BIDS-Apps/HCPPipelines)
GITHUB bids/matlab-compiler-runtime Base image with Matlab compiler runtime (https://github.com/BIDS-Apps/matlab-compiler-runtime)
GITHUB bids/mrtrix3_connectome Generation and subsequent group analysis of structural connectomes generated from diffusion MRI data (via the MRtrix3 software package). https://github.com/BIDS-Apps/MRtrix3_connectome
GITHUB bids/niak The neuroimaging analysis kit. Pipeline for preprocessing of fMRI and structural MRI scans http://niak.simexp-lab.org/ (https://github.com/BIDS-Apps/niak)
GITHUB bids/pymvpa Take fMRI data and generates ROI based MultiVariate Pattern Analysis (MVPA) outputs (https://github.com/BIDS-Apps/PyMVPA)
GITHUB bids/rshrf Resting state HRF estimation and deconvolution (https://github.com/BIDS-Apps/rsHRF) rsHRF
GITHUB bids/spm The implementation of the theoretical concepts of Statistical Parametric Mapping in a complete analysis package. spm12
GITHUB bids/tracula Implements Freesurfer's TRACULA (TRActs Constrained by UnderLying Anatomy) tool for cross-sectional as well as longitudinal (multi session) input data (https://github.com/BIDS-Apps/tracula)
GITHUB bids/validator A validator for BIDS (Brain Imaging Data Structure) datasets. bids-validator
GITHUB couchdb CouchDB is a database that uses JSON for documents, an HTTP API, & JavaScript/declarative indexing. couchdb, couchdb.cmd, couchjs, remsh
GITHUB elasticsearch Elasticsearch is a powerful open source search and analytics engine that makes data easy to explore. elasticsearch, elasticsearch-certgen, elasticsearch-certutil, elasticsearch-cli, elasticsearch-croneval, elasticsearch-env, elasticsearch-env-from-file, elasticsearch-keystore, elasticsearch-migrate, elasticsearch-node, elasticsearch-plugin, elasticsearch-saml-metadata, elasticsearch-setup-passwords, elasticsearch-shard, elasticsearch-sql-cli, elasticsearch-sql-cli-7.12.0.jar, elasticsearch-syskeygen, elasticsearch-users
GITHUB ghcr.io/autamus/abi-dumper ABI Dumper is a tool for dumping ABI information of an ELF object containing DWARF debug info. abi-dumper
GITHUB ghcr.io/autamus/abyss ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. abyss-align, abyss-bloom, abyss-bloom-dbg, abyss-bloom-dist.mk, abyss-bowtie, abyss-bowtie2, abyss-bwa, abyss-bwamem, abyss-bwasw, abyss-db-csv, abyss-db-txt, abyss-dida, abyss-fac, abyss-fatoagp, abyss-filtergraph, abyss-fixmate, abyss-fixmate-ssq, abyss-gapfill, abyss-gc, abyss-index, abyss-junction, abyss-kaligner, abyss-layout, abyss-longseqdist, abyss-map, abyss-map-ssq, abyss-mergepairs, abyss-overlap, abyss-paired-dbg, abyss-paired-dbg-mpi, abyss-pe, abyss-samtoafg, abyss-scaffold, abyss-sealer, abyss-stack-size, abyss-tabtomd, abyss-todot, abyss-tofastq
GITHUB ghcr.io/autamus/accumulo Apache Accumulo is a sorted, distributed key/value store that provides robust, scalable data storage and retrieval.
GITHUB ghcr.io/autamus/addrwatch addrwatch is a similar software to arpwatch. It main purpose is to monitor network and log ethernet/ip pairings. addrwatch, addrwatch_stdout, addrwatch_syslog
GITHUB ghcr.io/autamus/adios The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation. adios_config, adios_lint, adios_list_methods, adios_list_methods_nompi, adios_list_methods_readonly, adios_list_methods_readonly_nompi
GITHUB ghcr.io/autamus/adios2 The Adaptable Input Output System version 2, developed in the Exascale Computing Program adios2-config, adios2_deactivate_bp, adios2_iotest, adios2_reorganize, adios2_reorganize_mpi
GITHUB ghcr.io/autamus/admixtools ADMIXTOOLS is a collection of programs which use genetic data to infer how populations are related to one another. convertf, dowtjack, expfit.sh, gcount, grabpars, gsl-config, gsl-histogram, gsl-randist, jackdiff, kimf, mergeit, mkpretty, qp3Pop, qp4diff, qpAdm, qpBound, qpDpart, qpDstat, qpF4ratio, qpGraph, qpWave, qpdslow, qpff3base, qpfmv, qpfstats, qpreroot, rexpfit.r, rolloff, rolloffp, simpjack2, twtable, wtjack.pl
GITHUB ghcr.io/autamus/advancecomp AdvanceCOMP is a set of cross-platform command line data (re-)compression tools. advdef, advmng, advpng, advzip
GITHUB ghcr.io/autamus/alan A simple in-terminal alignment viewer. alan
GITHUB ghcr.io/autamus/alps Algorithms and Libraries for Physics Simulations. alpspython
GITHUB ghcr.io/autamus/amrex AMReX is a publicly available software framework designed for building massively parallel block- structured adaptive mesh refinement (AMR) applications.
GITHUB ghcr.io/autamus/angsd ANGSD is a software for analyzing next generation sequencing data. angsd
GITHUB ghcr.io/autamus/arborx ArborX is a performance-portable library for geometric search
GITHUB ghcr.io/autamus/argobots A lightweight runtime system that supports integrated computation and data movement with massive concurrency.
GITHUB ghcr.io/autamus/aria2 aria2 is a lightweight multi-protocol & multi-source command-line download utility. aria2c
GITHUB ghcr.io/autamus/ascent An open source many-core capable lightweight in situ visualization and analysis infrastructure for multi-physics HPC simulations.
GITHUB ghcr.io/autamus/astral ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees. astral
GITHUB ghcr.io/autamus/bart BART: Toolbox for Computational Magnetic Resonance Imaging bart, bartview
GITHUB ghcr.io/autamus/bbmap A suite of fast, multithreaded bioinformatics tools designed for analysis of DNA and RNA sequence data.
GITHUB ghcr.io/autamus/bcftools BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. bcftools
GITHUB ghcr.io/autamus/beast2 BEAST 2 is a cross-platform program for Bayesian phylogenetic analysis of molecular sequences. beast, beasti, beauti, densitree, treeannotator
GITHUB ghcr.io/autamus/bedops BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. bam2bed, bam2bed_gnuParallel, bam2bed_sge, bam2bed_slurm, bam2starch, bam2starch_gnuParallel, bam2starch_sge, bam2starch_slurm, bedextract, bedmap, bedops, closest-features, convert2bed, gff2bed, gff2starch, gtf2bed, gtf2starch, gvf2bed, gvf2starch, psl2bed, psl2starch, rmsk2bed, rmsk2starch, sam2bed, sam2starch, sort-bed, starch, starch-diff, starchcat, starchcluster_gnuParallel, starchcluster_sge, starchcluster_slurm, starchstrip, unstarch, update-sort-bed-migrate-candidates, update-sort-bed-slurm, update-sort-bed-starch-slurm, vcf2bed, vcf2starch, wig2bed, wig2starch
GITHUB ghcr.io/autamus/bedtools2 The swiss army knife for genome arithmetic annotateBed, bamToBed, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, fastaFromBed, flankBed, genomeCoverageBed, intersectBed, linksBed, mapBed, maskFastaFromBed, mergeBed, multiIntersectBed, nucBed, pairToBed, randomBed, shiftBed, shuffleBed, slopBed, sortBed, subtractBed, unionBedGraphs, windowBed
GITHUB ghcr.io/autamus/bismark Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step. bismark, bismark_genome_preparation, bismark_methylation_extractor, bismark2bedGraph, bismark2report, bismark2summary
GITHUB ghcr.io/autamus/bolt BOLT targets a high-performing OpenMP implementation, especially specialized for fine-grain parallelism.
GITHUB ghcr.io/autamus/boost The Boost project provides free peer-reviewed portable C++ source libraries.
GITHUB ghcr.io/autamus/bowtie2 Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s
GITHUB ghcr.io/autamus/bracken Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
GITHUB ghcr.io/autamus/bwa BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. bwa
GITHUB ghcr.io/autamus/cabana The Exascale Co-Design Center for Particle Applications Toolkit
GITHUB ghcr.io/autamus/caliper Caliper is a program instrumentation and performance measurement framework. cali-query, cali-stat
GITHUB ghcr.io/autamus/cantera Cantera is an open-source collection of object-oriented software tools for problems involving chemical kinetics, thermodynamics, and transport processes.
GITHUB ghcr.io/autamus/cctools The Cooperative Computing Tools (CCTools) are a collection of programs that enable large scale distributed computing on systems such as clusters, clouds, and grids. c_rehash, captoinfo, catalog_query, catalog_server, catalog_update, ccache-swig, cctools_gpu_autodetect, chirp, chirp_audit_cluster, chirp_benchmark, chirp_distribute, chirp_fuse, chirp_get, chirp_put, chirp_server, chirp_server_hdfs, chirp_status, chirp_stream_files, chroot_package_run, clear, condor_submit_makeflow, condor_submit_workers, confuga_adm, corelist, cpan, cpanm
GITHUB ghcr.io/autamus/cdo CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data. cdo
GITHUB ghcr.io/autamus/cfitsio CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.
GITHUB ghcr.io/autamus/circos Circos is a software package for visualizing data and information. circos
GITHUB ghcr.io/autamus/clhep CLHEP is a C++ library that provides utility classes for general numerical programming, vector arithmetic, geometry, pseudorandom number generation, and linear algebra, specifically targeted for high energy physics simulation and analysis software. Cast-config, Evaluator-config, Exceptions-config, GenericFunctions-config, Geometry-config, Matrix-config, Random-config, RandomObjects-config, RefCount-config, Units-config, Utility-config, Vector-config, clhep-config
GITHUB ghcr.io/autamus/clingo An ASP system to ground and solve logic programs. clingo, gringo
GITHUB ghcr.io/autamus/cloc cloc is a command line program that takes file, directory, and/or archive names as inputs. cloc
GITHUB ghcr.io/autamus/conduit Conduit is an open source project from Lawrence Livermore National Laboratory that provides an intuitive model for describing hierarchical scientific data in C++, C, Fortran, and Python. conduit_blueprint_verify, conduit_relay_entangle.py, conduit_relay_io_convert, conduit_relay_io_ls, conduit_relay_node_viewer, conduit_staging, conduit_staging.sh
GITHUB ghcr.io/autamus/corset Corset is a command-line program to go from a de novo transcriptome assembly to gene-level counts. corset, corset_fasta_ID_changer
GITHUB ghcr.io/autamus/cowsay What does the cow say? cowsay
GITHUB ghcr.io/autamus/cufflinks Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. cuffcompare, cuffdiff, cufflinks, cuffmerge, cuffnorm, cuffquant
GITHUB ghcr.io/autamus/curl cURL is a computer software project providing a library and command-line tool for transferring data using various network protocols. The name stands for 'Client URL', which was first released in 1997. c_rehash, curl, curl-config
GITHUB ghcr.io/autamus/dakota The Dakota project delivers both state-of-the-art research and robust, usable software for optimization and UQ. Broadly, the Dakota software's advanced parametric analyses enable design exploration, model calibration, risk analysis, and quantification of margins and uncertainty with computational models. dakota, dakota_library_mode, dakota_library_split, dakota_order_input, dakota_restart_util
GITHUB ghcr.io/autamus/datatransferkit DataTransferKit is an open-source software library of parallel solution transfer services for multiphysics simulations
GITHUB ghcr.io/autamus/diamond A sequence aligner for protein and translated DNA searches, designed for high performance analysis of big sequence data. diamond
GITHUB ghcr.io/autamus/dyninst DyninstAPI - Tools for binary instrumentation, analysis, and modification.
GITHUB ghcr.io/autamus/eagle Explicit Alternative Genome Likelihood Evaluator eagle, eagle-nm, eagle-rc
GITHUB ghcr.io/autamus/ed GNU ed is a line-oriented text editor used to create, display, modify and otherwise manipulate text files, both interactively and via shell scripts https://www.gnu.org/software/ed. ed, red
GITHUB ghcr.io/autamus/emacs The Emacs programmable text editor. https://www.gnu.org/software/emacs ebrowse, emacs, emacsclient, etags
GITHUB ghcr.io/autamus/faodel Flexible, Asynchronous, Object Data-Exchange Libraries faodel
GITHUB ghcr.io/autamus/fastqc A quality control tool for high throughput sequence data. fastqc
GITHUB ghcr.io/autamus/ffmpeg FFmpeg is a free and open-source software project consisting of a large suite of libraries and programs for handling video, audio, and other multimedia files and streams. ffmpeg, ffprobe
GITHUB ghcr.io/autamus/flit Floating-point Litmus Tests (FLiT) is a C++ test infrastructure for detecting variability in floating-point code caused by variations in compiler code generation, hardware and execution environments. flit
GITHUB ghcr.io/autamus/fraggenescan An application for finding (fragmented) genes in short reads.
GITHUB ghcr.io/autamus/gasnet GASNet is a language-independent, networking middleware layer that provides network-independent, high-performance communication primitives including Remote Memory Access (RMA) and Active Messages (AM). gasnet_trace, gasnet_trace.pl
GITHUB ghcr.io/autamus/gatk GATK (pronounced 'Gee-ay-tee-kay', not 'Gat-kay'), stands for GenomeAnalysisToolkit. It is a collection of command-line tools for analyzing high-throughput sequencing data with a primary focus on variant discovery. gatk
GITHUB ghcr.io/autamus/gawk gawk is the GNU implementation of awk. The awk utility interprets a special-purpose programming language that makes it possible to handle simple data-reformatting jobs with just a few lines of code. https://www.gnu.org/software/gawk/ gawk
GITHUB ghcr.io/autamus/gcc The GNU Compiler Collection c++, cpp, g++, gcc, gcc-ar, gcc-nm, gcc-ranlib, gcov, gcov-dump, gcov-tool, gfortran, zstd
GITHUB ghcr.io/autamus/gdal GDAL is a translator library for raster and vector geospatial data formats that is released under an X/MIT style Open Source License by the Open Source Geospatial Foundation. gdal-config, gdal_contour, gdal_create, gdal_grid, gdal_rasterize, gdal_translate, gdal_viewshed, gdaladdo, gdalbuildvrt, gdaldem, gdalenhance, gdalinfo, gdallocationinfo, gdalmanage, gdalmdiminfo, gdalmdimtranslate, gdalsrsinfo, gdaltindex, gdaltransform, gdalwarp
GITHUB ghcr.io/autamus/geant4 Geant4 is a platform for the simulation of the passage of particles through matter using Monte Carlo methods. Cast-config, CreateDOMDocument, DOMCount, DOMPrint, EnumVal, Evaluator-config, Exceptions-config, GenericFunctions-config, Geometry-config, Matrix-config, MemParse, PParse, PSVIWriter, Random-config, RandomObjects-config, Redirect, RefCount-config, SAX2Count, SAX2Print, SAXCount, SAXPrint, SCMPrint, SEnumVal, StdInParse, Units-config, Utility-config, Vector-config, XInclude, geant4-config, geant4.csh, geant4.sh
GITHUB ghcr.io/autamus/geos GEOS is a C++11 library for performing operations on two-dimensional vector geometries. geos-config
GITHUB ghcr.io/autamus/ginkgo High-performance linear algebra library for manycore systems, with a focus on sparse solution of linear systems.
GITHUB ghcr.io/autamus/git Git is software for tracking changes in any set of files, usually used for coordinating work among programmers collaboratively developing source code during software development. Its goals include speed, data integrity, and support for distributed, non-linear workflows. git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack
GITHUB ghcr.io/autamus/glpk The GLPK package is a set of routines written in ANSI C and organized in the form of a callable library. This package is intended for solving large-scale linear programming (LP), mixed integer linear programming (MIP), and other related problems. glpsol
GITHUB ghcr.io/autamus/gmp GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating-point numbers. curl
GITHUB ghcr.io/autamus/gnuplot Gnuplot is a portable command-line driven graphing utility for Linux, OS/2, MS Windows, OSX, VMS, and many other platforms. gnuplot
GITHUB ghcr.io/autamus/gotcha C software library for shared library function wrapping, enables tools to intercept calls into shared libraries
GITHUB ghcr.io/autamus/graphviz Graphviz is open source graph visualization software. gc, gml2gv, graphml2gv, gv2gml, gv2gxl, gvcolor, gvgen, gvmap, gvmap.sh, gvpack, gvpr, gxl2dot, gxl2gv
GITHUB ghcr.io/autamus/grass GRASS GIS (https://grass.osgeo.org/) is a Geographic Information System used for geospatial data management and analysis, image processing, graphics/map production, spatial modeling, and visualization. grass78
GITHUB ghcr.io/autamus/gromacs A versatile package to perform molecular dynamics.
GITHUB ghcr.io/autamus/gsl The GNU Scientific Library. gsl-config, gsl-histogram, gsl-randist
GITHUB ghcr.io/autamus/hdf5 HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections. h5clear, h5copy, h5debug, h5diff, h5dump, h5format_convert, h5import, h5jam, h5ls, h5mkgrp, h5pcc, h5perf, h5perf_serial, h5redeploy, h5repack, h5repart, h5stat, h5unjam
GITHUB ghcr.io/autamus/heaptrack Heaptrack traces all memory allocations and annotates these events with stack traces. heaptrack, heaptrack_print
GITHUB ghcr.io/autamus/hisat2 HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes as well as to a single reference genome. hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, hisatgenotype.py, hisatgenotype_build_genome.py, hisatgenotype_extract_reads.py, hisatgenotype_extract_vars.py, hisatgenotype_hla_cyp.py, hisatgenotype_locus.py
GITHUB ghcr.io/autamus/hmmer HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. hmmalign, hmmbuild, hmmconvert, hmmemit, hmmfetch, hmmlogo, hmmpgmd, hmmpgmd_shard, hmmpress, hmmscan, hmmsearch, hmmsim, hmmstat
GITHUB ghcr.io/autamus/hpctoolkit HPCToolkit is an integrated suite of tools for measurement and analysis of program performance on computers ranging from multicore desktop systems to the nation's largest supercomputers. hello, hpclink, hpcprof, hpcrun, hpcstruct, hpcviewer
GITHUB ghcr.io/autamus/hpx C++ runtime system for parallel and distributed applications. hpxcxx, hpxrun.py
GITHUB ghcr.io/autamus/htop htop is an interactive text-mode process viewer for Unix systems. https://github.com/hishamhm/htop htop
GITHUB ghcr.io/autamus/htslib A C library for reading/writing high-throughput sequencing data. htsfile
GITHUB ghcr.io/autamus/hypre A library of high performance preconditioners and solvers featuring multigrid methods for the solution of large, sparse linear systems of equations on massively parallel computers.
GITHUB ghcr.io/autamus/igraph igraph is a library collection for creating and manipulating graphs and analyzing networks. It is written in C and also exists as Python and R packages.
GITHUB ghcr.io/autamus/intel-mkl Intel oneAPI Math Kernel Library, formerly just Intel Math Kernel Library, is a library of optimized math routines for science, engineering, and financial applications.
GITHUB ghcr.io/autamus/ior IOR is a parallel IO benchmark that can be used to test the performance of parallel storage systems using various interfaces and access patterns. ior
GITHUB ghcr.io/autamus/iq-tree IQ-TREE (http://www.iqtree.org, last accessed February 6, 2020) is a user-friendly and widely used software package for phylogenetic inference using maximum likelihood. iq-tree2
GITHUB ghcr.io/autamus/jags Just Another Gibbs Sampler. A program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation. jags
GITHUB ghcr.io/autamus/jasper JasPer is a collection of software (i.e., a library and application programs) for the coding and manipulation of images. jasper, jpegtran
GITHUB ghcr.io/autamus/julia Julia is a high-level, high-performance, dynamic programming language. julia
GITHUB ghcr.io/autamus/kallisto kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. kallisto
GITHUB ghcr.io/autamus/kraken2 Kraken 2 is the newest version of Kraken, a taxonomic classification system using exact k-mer matches to achieve high accuracy and fast classification speeds. kraken2, kraken2-build, kraken2-inspect, kraken2lib.pm
GITHUB ghcr.io/autamus/lammps LAMMPS is a classical molecular dynamics code with a focus on materials modeling.
GITHUB ghcr.io/autamus/legion Legion is a data-centric parallel programming system for writing portable high performance programs targeted at distributed heterogeneous architectures. legion_prof.py, legion_serializer.py, legion_spy.py
GITHUB ghcr.io/autamus/libnrm Libnrm, the application instrumentation library for the Node Resource Manager(NRM).
GITHUB ghcr.io/autamus/libpng libpng is the official PNG reference library. libpng-config, libpng16-config, png-fix-itxt, pngfix
GITHUB ghcr.io/autamus/libquo QUO (as in status quo) is a runtime library that aids in accommodating thread-level heterogeneity in dynamic, phased MPI+X applications comprising single- and multi-threaded libraries. quo-info
GITHUB ghcr.io/autamus/libtiff Libtiff is a library for reading and writing Tagged Image File Format (abbreviated TIFF) files. fax2tiff, ppm2tiff, raw2tiff, tiff2bw, tiff2pdf, tiff2ps, tiff2rgba, tiffcmp, tiffcp, tiffcrop, tiffdither, tiffdump, tiffinfo, tiffmedian, tiffset, tiffsplit
GITHUB ghcr.io/autamus/libunwind A portable and efficient C programming interface (API) to determine the call-chain of a program.
GITHUB ghcr.io/autamus/libxpm The X PixMap image format is an extension of the monochrome X BitMap format specified in the X protocol, and is commonly used in traditional X applications.
GITHUB ghcr.io/autamus/lmod The Persistence of Vision Ray Tracer, most commonly acronymed as POV-Ray, is a cross-platform ray-tracing program that generates images from a text-based scene description. module
GITHUB ghcr.io/autamus/loki Loki is a C++ library of designs, containing flexible implementations of common design patterns and idioms.
GITHUB ghcr.io/autamus/lp-solve Lp_solve is freely available (under LGPL 2) software for solving linear, integer and mixed integer programs. lp_solve
GITHUB ghcr.io/autamus/mafft MAFFT is a multiple sequence alignment program for unix-like operating systems. mafft, mafft-distance, mafft-einsi, mafft-fftns, mafft-fftnsi, mafft-ginsi, mafft-linsi, mafft-nwns, mafft-nwnsi, mafft-profile, mafft-qinsi, mafft-xinsi
GITHUB ghcr.io/autamus/meme The MEME suite provides online tools for discovering and using protein and DNA sequence motifs. meme, meme-chip, memhog
GITHUB ghcr.io/autamus/mercurial Mercurial is a distributed revision control tool for software developers. hg
GITHUB ghcr.io/autamus/mercury Mercury is a C library for implementing RPC, optimized for HPC
GITHUB ghcr.io/autamus/metall A Persistent Memory Allocator For Data-Centric Analytics
GITHUB ghcr.io/autamus/migrate Migrate estimates effective population sizes and past migration rates between n population assuming a migration matrix model with asymmetric migration rates and different subpopulation sizes migrate-n
GITHUB ghcr.io/autamus/mothur A single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community. mothur
GITHUB ghcr.io/autamus/mpc mithi/mpc: A software pipeline using the Model Predictive Control method to drive a car around a virtual track.
GITHUB ghcr.io/autamus/mpfr The MPFR library is a C library for multiple-precision floating-point computations with correct rounding.
GITHUB ghcr.io/autamus/mummer MUMmer is a system for rapidly aligning entire genomes. mummer, mummerplot
GITHUB ghcr.io/autamus/muscle Multiple Sequence Alignment. muscle
GITHUB ghcr.io/autamus/nco nc-config, ncap2, ncatted, ncbo, ncclimo, nccopy, ncdiff, ncdump, ncea, ncecat, nces, ncflint, ncgen, ncgen3, ncks, ncpdq, ncra, ncrcat, ncremap, ncrename, ncurses6-config, ncursesw6-config, ncwa
GITHUB ghcr.io/autamus/ninja Ninja is a small build system with a focus on speed. ninja, ninja-build
GITHUB ghcr.io/autamus/node-js A JavaScript runtime built on Chrome's V8 JavaScript engine. node
GITHUB ghcr.io/autamus/octave GNU Octave is a high-level interpreted language, primarily intended for numerical computations (like an open source Matlab) octave, octave-6.2.0, octave-cli, octave-cli-6.2.0, octave-config, octave-config-6.2.0
GITHUB ghcr.io/autamus/omega-h Omega_h is a C++11 library providing data structures and algorithms for adaptive discretizations.
GITHUB ghcr.io/autamus/openbabel Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas. obabel, obconformer, obdistgen, obenergy, obfit, obfitall, obgen, obgrep, obminimize, obmm, obprobe, obprop, obrms, obrotamer, obrotate, obspectrophore, obsym, obtautomer, obthermo
GITHUB ghcr.io/autamus/opencv OpenCV is a library of programming functions mainly aimed at real-time computer vision. Originally developed by Intel, it was later supported by Willow Garage then Itseez. opencv_version, setup_vars_opencv4.sh
GITHUB ghcr.io/autamus/openjdk Open Java Development Kit jaotc, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jdeps, jfr, jhsdb, jimage, jinfo, jjs, jlink, jmap, jmod, jps, jrunscript, jshell, jstack, jstat, jstatd
GITHUB ghcr.io/autamus/openmpi An open source Message Passing Interface implementation. mpiCC, mpic++, mpicc, mpicxx, mpiexec, mpif77, mpif90, mpifort, mpirun, ompi-clean, ompi-server, ompi_info
GITHUB ghcr.io/autamus/pandaseq A program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. pandaseq, pandaseq-checkid, pandaseq-diff, pandaseq-hang, pandaxs
GITHUB ghcr.io/autamus/papi Performance Application Programming Interface. papi_avail, papi_clockres, papi_command_line, papi_component_avail, papi_cost, papi_decode, papi_error_codes, papi_event_chooser, papi_hl_output_writer.py, papi_mem_info, papi_multiplex_cost, papi_native_avail, papi_version, papi_xml_event_info
GITHUB ghcr.io/autamus/papyrus Parallel Aggregate Persistent Storage
GITHUB ghcr.io/autamus/parallel-netcdf PnetCDF (Parallel netCDF) is a high-performance parallel I/O library for accessing files in format compatibility with Unidata's NetCDF, specifically the formats of CDF-1, 2, and 5. pnetcdf-config, pnetcdf_version
GITHUB ghcr.io/autamus/pdt Program Database Toolkit (PDT) is a framework for analyzing source code written in several programming languages and for making rich program knowledge accessible to developers of static and dynamic analysis tools.
GITHUB ghcr.io/autamus/perl The Perl programming language. perl, perlbug, perldoc, perlivp, perlthanks
GITHUB ghcr.io/autamus/petsc PETSc is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.
GITHUB ghcr.io/autamus/phist The Pipelined, Hybrid-parallel Iterative Solver Toolkit provides implementations of and interfaces to block iterative solvers for sparse linear and eigenvalue problems. phist_Danasazi_krylov_schur, phist_Danasazi_lobpcg, phist_Dbelos_bgmres, phist_Dbelos_bpcg, phist_Dblockedbicgstab, phist_Dblockedgmres, phist_Dblockedpcg, phist_Dsimple_lanczos, phist_Dsubspacejada, phist_carp_cg
GITHUB ghcr.io/autamus/picard A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. picard, picard.jar
GITHUB ghcr.io/autamus/plasma Parallel Linear Algebra Software for Multicore Architectures, PLASMA is a software package for solving problems in dense linear algebra using multicore processors and Xeon Phi coprocessors. plasmatest
GITHUB ghcr.io/autamus/plink PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. plink
GITHUB ghcr.io/autamus/poppler Poppler is a free software utility library for rendering Portable Document Format (PDF) documents. pdfattach, pdfdetach, pdffonts, pdfimages, pdfinfo, pdfseparate, pdftohtml, pdftops, pdftotext, pdfunite, png-fix-itxt, pngfix
GITHUB ghcr.io/autamus/povray The Persistence of Vision Ray Tracer, most commonly acronymed as POV-Ray, is a cross-platform ray-tracing program that generates images from a text-based scene description. povray
GITHUB ghcr.io/autamus/precice preCICE (Precise Code Interaction Coupling Environment) is a coupling library for partitioned multi-physics simulations.
GITHUB ghcr.io/autamus/prodigal Prodigal Gene Prediction Software prodigal
GITHUB ghcr.io/autamus/proj PROJ is a generic coordinate transformation software, that transforms coordinates from one coordinate reference system (CRS) to another. proj, projinfo, projsync
GITHUB ghcr.io/autamus/protobuf Protocol Buffers is a method of serializing structured data. It is useful in developing programs to communicate with each other over a network or for storing data. protoc, protoc-3.15.8.0
GITHUB ghcr.io/autamus/pumi SCOREC RPI's Parallel Unstructured Mesh Infrastructure (PUMI). print_pumipic_partition
GITHUB ghcr.io/autamus/py-libensemble Library for managing ensemble-like collections of computations.
GITHUB ghcr.io/autamus/py-petsc4py This package provides Python bindings for the PETSc package.
GITHUB ghcr.io/autamus/python An interpreted, high-level and general-purpose programming language. pydoc3, pydoc3.8, python, python-config, python3, python3-config, python3.8, python3.8-config, python3.8-gdb.py
GITHUB ghcr.io/autamus/qhull Snappy (previously known as Zippy) is a fast data compression and decompression library written in C++ by Google based on ideas from LZ77 and open-sourced in 2011. qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox
GITHUB ghcr.io/autamus/r-seqlogo Sequence logos for DNA sequence alignments
GITHUB ghcr.io/autamus/r R is a language and environment for statistical computing and graphics. R
GITHUB ghcr.io/autamus/raxml RAxML (Randomized Axelerated Maximum Likelihood) is a popular program for phylogenetic analysis of large datasets under maximum likelihood. raxmlHPC, raxmlHPC-AVX, raxmlHPC-MPI, raxmlHPC-MPI-AVX, raxmlHPC-MPI-SSE3, raxmlHPC-SSE3
GITHUB ghcr.io/autamus/rclone Rclone is a command line program to manage files on cloud storage. rclone
GITHUB ghcr.io/autamus/rempi ReMPI is a record-and-replay tool for MPI applications. rempi, rempi_record, rempi_replay, reset
GITHUB ghcr.io/autamus/rsync An open source utility that provides fast incremental file transfer. https://rsync.samba.org/ rsync, rsync-ssl
GITHUB ghcr.io/autamus/ruby An interpreted, high-level, general-purpose programming language. bundle, bundler, erb, gem, irb, racc, rake, rbs, rdoc, ri, ruby
GITHUB ghcr.io/autamus/rust Rust is a multi-paradigm programming language designed for performance and safety, especially safe concurrency. cargo, cargo-clippy, cargo-fmt, clippy-driver, rust, rust-gdb, rust-gdbgui, rust-lldb, rustc, rustdoc, rustfmt
GITHUB ghcr.io/autamus/salmon Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data. salmon
GITHUB ghcr.io/autamus/samtools Samtools is a suite of programs for interacting with high-throughput sequencing data. blast2sam.pl, bowtie2sam.pl, export2sam.pl, fasta-sanitize.pl, interpolate_sam.pl, novo2sam.pl, psl2sam.pl, sam2vcf.pl, samtools, samtools.pl, seq_cache_populate.pl, soap2sam.pl, wgsim_eval.pl, zoom2sam.pl
GITHUB ghcr.io/autamus/scons SCons is an Open Source software construction tool. scons, scons-3.1.2, scons-3.1.2.bat, scons-configure-cache, scons-configure-cache-3.1.2, scons-time, scons-time-3.1.2, scons.bat, sconsign, sconsign-3.1.2
GITHUB ghcr.io/autamus/scr SCR caches checkpoint data in storage on the compute nodes of a Linux cluster to provide a fast, scalable checkpoint/restart capability for MPI codes. scancel, scontrol, scp, scr_check_node, scr_ckpt_interval.py, scr_copy, scr_crc32, scr_env, scr_flush_file, scr_get_jobstep_id, scr_glob_hosts, scr_halt, scr_halt_cntl, scr_index, scr_inspect, scr_kill_jobstep, scr_list_dir, scr_list_down_nodes, scr_log_event, scr_log_transfer, scr_nodes_file, scr_postrun, scr_prefix, scr_prerun, scr_print, scr_rebuild_partner, scr_rebuild_rs, scr_rebuild_xor, scr_retries_halt, scr_run, scr_scavenge, scr_srun, scr_test_datemanip, scr_test_runtime, scr_watchdog, scrlog.py, scrontab
GITHUB ghcr.io/autamus/siesta SIESTA performs electronic structure calculations and ab initio molecular dynamics simulations of molecules and solids. siesta
GITHUB ghcr.io/autamus/slate The Software for Linear Algebra Targeting Exascale (SLATE) project is to provide fundamental dense linear algebra capabilities to the US Department of Energy and to the high-performance computing (HPC) community at large.
GITHUB ghcr.io/autamus/slepc Scalable Library for Eigenvalue Problem Computations.
GITHUB ghcr.io/autamus/snappy Snappy (previously known as Zippy) is a fast data compression and decompression library written in C++ by Google based on ideas from LZ77 and open-sourced in 2011.
GITHUB ghcr.io/autamus/spades St. Petersburg genome assembler – an assembly toolkit containing various assembly pipelines. spades-bwa, spades-convert-bin-to-fasta, spades-core, spades-corrector-core, spades-gbuilder, spades-gmapper, spades-gsimplifier, spades-hammer, spades-ionhammer, spades-kmer-estimating, spades-kmercount, spades-read-filter, spades-truseq-scfcorrection, spades.py, spaligner
GITHUB ghcr.io/autamus/sparsehash several hash-map implementations, similar in API to SGI's hash_map class, but with different performance characteristics.
GITHUB ghcr.io/autamus/sqlite SQLite is a relational database management system contained in a C library. sqlite3
GITHUB ghcr.io/autamus/stc The Swift-Turbine Compiler (STC) stc, swift-t
GITHUB ghcr.io/autamus/stringtie StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. stringtie
GITHUB ghcr.io/autamus/superlu SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines.
GITHUB ghcr.io/autamus/sz Error-bounded Lossy Compressor for HPC Data sz
GITHUB ghcr.io/autamus/tasmanian The Toolkit for Adaptive Stochastic Modeling and Non-Intrusive ApproximatioN is a robust library for high dimensional integration and interpolation as well as parameter calibration. https://tasmanian.ornl.gov tasgrid
GITHUB ghcr.io/autamus/tau A portable profiling and tracing toolkit for performance analysis of parallel programs written in Fortran, C, C++, UPC, Java, Python.
GITHUB ghcr.io/autamus/tcsh tcsh
GITHUB ghcr.io/autamus/trilinos The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented software framework for the solution of large-scale, complex multi-physics engineering and scientific problems. A unique design feature of Trilinos is its focus on packages.
GITHUB ghcr.io/autamus/turbine Turbine is the Swift/T runtime turbine, turbine-pilot, turbine-read-doubles, turbine-write-doubles
GITHUB ghcr.io/autamus/udunits The UDUNITS package supports units of physical quantities. Its C library provides for arithmetic manipulation of units and for conversion of numeric values between compatible units. udunits2
GITHUB ghcr.io/autamus/umap Umap is a library that provides an mmap()-like interface to a simple, user-space page fault handler based on the userfaultfd Linux feature (starting with 4.3 linux kernel).
GITHUB ghcr.io/autamus/unifyfs User level file system that enables applications to use node-local storage as burst buffers for shared files. unifyfs, unifyfs-config, unifyfsd
GITHUB ghcr.io/autamus/unixodbc unixODBC-Test containing Qt based ODBC test tool, and autotest framework. odbc_config, odbcinst
GITHUB ghcr.io/autamus/upcxx UPC++ is a C++ library that supports Partitioned Global Address Space (PGAS) programming, and is designed to interoperate smoothly and efficiently with MPI, OpenMP, CUDA and AMTs. upcxx, upcxx-meta, upcxx-run, upcxx.sh
GITHUB ghcr.io/autamus/valgrind A suite of tools for debugging and profiling. valgrind, valgrind-di-server, valgrind-listener
GITHUB ghcr.io/autamus/veloc Very-Low Overhead Checkpointing System. VELOC is a multi-level checkpoint-restart runtime for HPC supercomputing infrastructures veloc-backend, veloc_check_node, veloc_env, veloc_glob_hosts, veloc_jsrun, veloc_list_down_nodes
GITHUB ghcr.io/autamus/wget GNU Wget is a free software package for retrieving files using HTTP, HTTPS, FTP and FTPS, the most widely used Internet protocols. wget
GITHUB ghcr.io/autamus/xnnpack High-efficiency floating-point neural network inference operators for mobile, server, and Web
GITHUB ghcr.io/autamus/xrootd XRootD software framework is a fully generic suite for fast, low latency and scalable data access, which can serve natively any kind of data, organized as a hierarchical filesystem-like namespace, based on the concept of directory. xrdacctest, xrdadler32, xrdcopy, xrdcp, xrdfs, xrdgsiproxy, xrdgsitest, xrdmapc, xrdpfc_print, xrdpinls, xrdpwdadmin, xrdsssadmin, xrootd, xrootd-config
GITHUB ghcr.io/autamus/xz XZ Utils is free general-purpose data compression software with a high compression ratio. xz, xzcat, xzcmp, xzdec, xzdiff, xzegrep, xzfgrep, xzgrep, xzless, xzmore
GITHUB ghcr.io/autamus/zfp zfp is a compressed number format for multidimensional floating-point and integer arrays.
GITHUB ghcr.io/autamus/zlib zlib is a software library used for data compression. zlib was written by Jean-loup Gailly and Mark Adler and is an abstraction of the DEFLATE compression algorithm used in their gzip file compression program.
GITHUB ghcr.io/singularityhub/github-ci An example SIF on GitHub packages to pull with oras
GITHUB golang Go (a.k.a., Golang) is a programming language first developed at Google. go, gofmt
GITHUB gradle Gradle is a build tool with a focus on build automation and support for multi-language development. gradle
GITHUB hashicorp/consul Automatic build of consul based on the current release. consul, docker-entrypoint.sh
GITHUB hashicorp/vault Vault is a tool for securely accessing secrets via a unified interface and tight access control. vault
GITHUB julia An interpreted, high-level, high-performance dynamic programming language for technical computing. julia
GITHUB jupyter/datascience-notebook Jupyter Datascience Notebook from https://github.com/jupyter/docker-stacks run-notebook
GITHUB jupyter/minimal-notebook Jupyter Minimal Notebook from https://github.com/jupyter/docker-stacks run-notebook
GITHUB jupyter/pyspark-notebook Jupyter Pyspark Notebook from https://github.com/jupyter/docker-stacks run-notebook
GITHUB jupyter/r-notebook Jupyter R Notebook from https://github.com/jupyter/docker-stacks run-notebook
GITHUB jupyter/scipy-notebook Jupyter Notebook Scientific Python Stack from https://github.com/jupyter/docker-stacks run-notebook
GITHUB jupyter/tensorflow-notebook Jupyter Tensorflow Notebook from https://github.com/jupyter/docker-stacks run-notebook
GITHUB kibana Kibana gives shape to any kind of data — structured and unstructured — indexed in Elasticsearch. kibana, kibana-encryption-keys, kibana-keystore, kibana-plugin
GITHUB mariadb MariaDB Server is one of the most popular database servers in the world. It’s made by the original developers of MySQL and guaranteed to stay open source. Notable users include Wikipedia, DBS Bank and ServiceNow. mariabackup, mariadb, mariadb-access, mariadb-admin, mariadb-analyze, mariadb-backup, mariadb-binlog, mariadb-check, mariadb-conv, mariadb-convert-table-format, mariadb-dump, mariadb-dumpslow, mariadb-find-rows, mariadb-fix-extensions, mariadb-hotcopy, mariadb-import, mariadb-install-db, mariadb-optimize, mariadb-plugin, mariadb-repair, mariadb-report, mariadb-secure-installation, mariadb-service-convert, mariadb-setpermission, mariadb-show, mariadb-slap, mariadb-tzinfo-to-sql, mariadb-upgrade, mariadb-waitpid, mariadbcheck, mariadbd-multi, mariadbd-safe, mariadbd-safe-helper
GITHUB mongo MongoDB is a free and open-source cross-platform document-oriented database program. Classified as a NoSQL database program, MongoDB uses JSON-like documents with schemata. mongo, mongod, mongodump, mongoexport, mongofiles, mongoimport, mongos, mongostat, mongostore, mongotop
GITHUB mysql MySQL is the world's most popular open source database. mysql, mysql_config_editor, mysql_secure_installation, mysql_ssl_rsa_setup, mysql_tzinfo_to_sql, mysql_upgrade, mysqladmin, mysqlbinlog, mysqlcheck, mysqld_multi, mysqld_safe, mysqldump, mysqldumpslow, mysqlimport, mysqlpump, mysqlshow, mysqlslap
GITHUB ncbi/blast The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.
GITHUB nginx Nginx (pronounced 'engine-x') is an open source reverse proxy server for HTTP, HTTPS, SMTP, POP3, and IMAP protocols, as well as a load balancer, HTTP cache, and a web server (origin server). nginx, nginx-debug
GITHUB node Node.js is a software platform for scalable server-side and networking applications. node, nodejs, npm, npx, yarn, yarnpkg
GITHUB nvcr.io/hpc/autodock The AutoDock-GPU Suite is a growing collection of methods for computational docking and virtual screening, for use in structure-based drug discovery and exploration of the basic mechanisms of biomolecular structure and function. More info on AutoDock-GPU be located at https://ccsb.scripps.edu/autodock/ and https://github.com/ccsb-scripps/AutoDock-GPU#usage. autodock
GITHUB nvcr.io/hpc/gromacs GROMACS is a popular molecular dynamics application used to simulate proteins and lipids. python
GITHUB nvcr.io/hpc/lammps Large-scale Atomic/Molecular Massively Parallel Simulator (LAMMPS) is a software application designed for molecular dynamics simulations. It has the potentials for solid-state materials (metals, semiconductor), soft matter (biomolecules, polymers), and coarse-grained or mesoscopic systems. The main use-case is atom scale particle modeling or, more generically, as a parallel particle simulator at the atomic, meson, or continuum scale. LAMMPS runs on single processors or in parallel using message-passing techniques and a spatial-decomposition of the simulation domain. Read more on the LAMMPS website https://lammps.sandia.gov/.
GITHUB nvcr.io/hpc/namd NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD uses the popular molecular graphics program VMD for simulation setup and trajectory analysis, but is also file-comp atible with AMBER, CHARMM, and X-PLOR. charmrun, flipbinpdb, flipdcd, namd3, psfgen, sortreplicas, vmd
GITHUB nvcr.io/hpc/preflightcheck The Pre-Flight Check container verifies that the container runtime is setup correctly for GPUs and InfiniBand.
GITHUB nvcr.io/hpc/quantum_espresso Quantum ESPRESSO is an integrated suite of Open-Source computer codes for electronic-structure calculations and materials modeling at the nanoscale based on density-functional theory, plane waves, and pseudopotentials.
GITHUB nvcr.io/nvidia/caffe NVIDIA Caffe, also known as NVCaffe, is an NVIDIA-maintained fork of Berkeley Vision and Learning Center (BVLC) Caffe tuned for NVIDIA GPUs, particularly in multi-GPU configurations. python
GITHUB nvcr.io/nvidia/digits The NVIDIA Deep Learning GPU Training System (DIGITS) puts the power of deep learning into the hands of engineers and data scientists. python
GITHUB nvcr.io/nvidia/hpc-benchmarks The NVIDIA HPC-Benchmarks collection provides three NVIDIA accelerated HPC benchmarks: HPL-NVIDIA, HPL-AI-NVIDIA, and HPCG-NVIDIA.
GITHUB nvcr.io/nvidia-hpcvis/paraview ParaView is one of the most popular visualization software for analyzing HPC datasets. pvdataserver, pvrenderserver, pvbatch, pypython, pvserver
GITHUB nvcr.io/nvidia/pytorch PyTorch is a GPU accelerated tensor computational framework with a Python front end. Functionality can be easily extended with common Python libraries such as NumPy, SciPy, and Cython. Automatic differentiation is done with a tape-based system at both a functional and neural network layer level.
GITHUB nvcr.io/nvidia/rapidsai/rapidsai The RAPIDS suite of software libraries gives you the freedom to execute end-to-end data science and analytics pipelines entirely on GPUs. python
GITHUB nvcr.io/nvidia/tensorflow TensorFlow is an open-source software library for high-performance numerical computation. Its flexible architecture allows easy deployment of computation across a variety of platforms (CPUs, GPUs, TPUs), and from desktops to clusters of servers to mobile and edge devices.
GITHUB openjdk OpenJDK is an open-source implementation of the Java Platform, Standard Edition. jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jdeprscan, jdeps, jfr, jhsdb, jimage, jinfo, jlink, jmap, jmod, jobs, join, jpackage, jps, jrunscript, jshell, jstack, jstat, jstatd
GITHUB php While designed for web development, the PHP scripting language also provides general-purpose use. php, php-cgi, php-config, phpdbg, phpize
GITHUB poldracklab/mriqc Automatic prediction of quality and visual reporting of MRI scans. mriqc
GITHUB postgres PostgreSQL, often simply 'Postgres', is an object-relational database management system (ORDBMS) with an emphasis on extensibility and standards-compliance. clusterdb, createdb, createuser, dropdb, dropuser, initdb, oid2name, pg_archivecleanup, pg_basebackup, pg_checksums, pg_config, pg_controldata, pg_ctl, pg_dump, pg_dumpall, pg_isready, pg_receivewal, pg_recvlogical, pg_resetwal, pg_restore, pg_rewind, pg_standby, pg_test_fsync, pg_test_timing, pg_upgrade, pg_verifybackup, pg_waldump, pgbench, postgres, postmaster, psql, reindexdb, vacuumdb, vacuumlo
GITHUB python An interpreted, high-level and general-purpose programming language. python
GITHUB quay.io/biocontainers/10x_bamtofastq singularity registry hpc automated addition for 10x_bamtofastq bamtofastq
GITHUB quay.io/biocontainers/2pg_cartesian shpc-registry automated BioContainers addition for 2pg_cartesian gmx, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, protpred-Gromacs-Dominance, protpred-Gromacs-Front, protpred-Gromacs-MC_Metropolis, protpred-Gromacs-Mono, protpred-Gromacs-NSGA2, protpred-Gromacs-Random_Algorithm, protpred-Gromacs-Sort_Method_Files_by_Front_Dominance, protpred-Gromacs-Sort_Method_by_Front_Dominance, protpred-Gromacs-Test_compute_Diehdral, protpred-Gromacs-Test_compute_objetivies, protpred-Gromacs-Test_crossover, protpred-Gromacs-Test_dm_refinement, protpred-Gromacs-Test_load_population, protpred-Gromacs-Test_random_number, protpred-Gromacs-Test_rotation, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/3seq singularity registry hpc automated addition for 3seq 3seq
GITHUB quay.io/biocontainers/a3partitioner singularity registry hpc automated addition for a3partitioner A3Partitioner, idle3.13, pydoc3.13, python3.13, python3.13-config, numpy-config
GITHUB quay.io/biocontainers/aacon singularity registry hpc automated addition for aacon aacon, jwebserver, pcre2posix_test, jpackage, cups-config, ippeveprinter, ipptool, hb-info, tjbench, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole
GITHUB quay.io/biocontainers/abacas shpc-registry automated BioContainers addition for abacas abacas.1.3.1.pl, abacas.pl, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot
GITHUB quay.io/biocontainers/abacat shpc-registry automated BioContainers addition for abacat phenotyping.py, prodigal.py, prokka.py, fastANI, annotate.py, prodigal, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/abawaca shpc-registry automated BioContainers addition for abawaca abawaca
GITHUB quay.io/biocontainers/abeona shpc-registry automated BioContainers addition for abeona abeona, cortexpy, kallisto, mccortex, mccortex127, mccortex31, mccortex63, mccortex95, nextflow, nextflow.bak, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown
GITHUB quay.io/biocontainers/abismal shpc-registry automated BioContainers addition for abismal abismal, abismalidx, simreads
GITHUB quay.io/biocontainers/abnumber shpc-registry automated BioContainers addition for abnumber ANARCI, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat
GITHUB quay.io/biocontainers/abpoa shpc-registry automated BioContainers addition for abpoa abpoa
GITHUB quay.io/biocontainers/abra2 shpc-registry automated BioContainers addition for abra2 abra2, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown
GITHUB quay.io/biocontainers/abricate shpc-registry automated BioContainers addition for abricate abricate, abricate-get_db, any2fasta, funzip, unzipsfx, zipgrep, zipinfo, unzip, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee
GITHUB quay.io/biocontainers/abritamr shpc-registry automated BioContainers addition for abritamr abriTAMR, abritamr, amr_report, amrfinder, amrfinder_update, dna_mutation, fasta2parts, fasta_check, fasta_extract, gff_check, vba_extract.py, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml
GITHUB quay.io/biocontainers/abromics_galaxy_json_extractor singularity registry hpc automated addition for abromics_galaxy_json_extractor abromics_extract, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1
GITHUB quay.io/biocontainers/abruijn shpc-registry automated BioContainers addition for abruijn abruijn, abruijn-assemble, abruijn-polish, abruijn-repeat, easy_install-2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5
GITHUB quay.io/biocontainers/absense singularity registry hpc automated addition for absense Plot_abSENSE.py, Run_abSENSE.py, get_gprof, get_objgraph, undill, f2py3.8, fonttools, pyftmerge, pyftsubset, ttx, brotli, tjbench, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, opj_compress, opj_decompress, opj_dump
GITHUB quay.io/biocontainers/abundancebin shpc-registry automated BioContainers addition for abundancebin abundancebin
GITHUB quay.io/biocontainers/abyss-k128 shpc-registry automated BioContainers addition for abyss-k128
GITHUB quay.io/biocontainers/abyss shpc-registry automated BioContainers addition for abyss ABYSS, ABYSS-P, abyss-align, abyss-bloom, abyss-bloom-dbg, abyss-bloom-dist.mk, abyss-bloom-dist.mk.Makefile, abyss-bowtie, abyss-bowtie2, abyss-bwa, abyss-bwamem, abyss-bwasw, abyss-db-txt, abyss-dida, abyss-fac, abyss-fatoagp, abyss-filtergraph, abyss-fixmate, abyss-fixmate-ssq, abyss-gapfill, abyss-gc, abyss-index, abyss-junction, abyss-kaligner, abyss-layout, abyss-longseqdist, abyss-map, abyss-map-ssq, abyss-mergepairs, abyss-overlap, abyss-paired-dbg, abyss-paired-dbg-mpi, abyss-pe, abyss-pe.Makefile, abyss-rresolver-short, abyss-samtoafg, abyss-scaffold, abyss-sealer, abyss-stack-size, abyss-tabtomd, abyss-todot, abyss-tofastq, irqtop, lsirq, nsenter, prlimit, scriptlive, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject
GITHUB quay.io/biocontainers/ac-diamond shpc-registry automated BioContainers addition for ac-diamond ac-diamond
GITHUB quay.io/biocontainers/ac shpc-registry automated BioContainers addition for ac AC
GITHUB quay.io/biocontainers/acdc singularity registry hpc automated addition for acdc acdc, acdc-filter-fasta-by-name.awk, acdc-make-fastas, kraken, kraken-build, kraken-filter, kraken-mpa-report, kraken-report, kraken-translate, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, jellyfish, tar, idn2, wget
GITHUB quay.io/biocontainers/aci singularity registry hpc automated addition for aci aci, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, jpgicc, linkicc, psicc, tificc, transicc
GITHUB quay.io/biocontainers/acms singularity registry hpc automated addition for acms acmbuild, acmbuild_checkCompatibility, acmbuild_train, acmsearch, addRNAoptions.pl, gapc, ghc, ghc-8.10.7, ghc-pkg, ghc-pkg-8.10.7, ghci, ghci-8.10.7, hp2ps, hpc, hsc2hs, runghc, runghc-8.10.7, runhaskell
GITHUB quay.io/biocontainers/actc singularity registry hpc automated addition for actc actc
GITHUB quay.io/biocontainers/adam shpc-registry automated BioContainers addition for adam adam-shell, adam-submit, beeline, beeline.cmd, csv-import, docker-image-tool.sh, elasticurl, elasticurl_cpp, elastipubsub, find-spark-home, find-spark-home.cmd, find_spark_home.py, load-spark-env.cmd, load-spark-env.sh, orc-memory, orc-scan, pyspark, pyspark.cmd, pyspark2.cmd, run-example, run-example.cmd, spark-class, spark-class.cmd, spark-class2.cmd, spark-shell, spark-shell.cmd, spark-shell2.cmd, spark-sql, spark-sql.cmd, spark-sql2.cmd, spark-submit, spark-submit.cmd, spark-submit2.cmd, sparkR, sparkR.cmd, sparkR2.cmd, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin
GITHUB quay.io/biocontainers/adapt shpc-registry automated BioContainers addition for adapt analyze_coverage.py, design.py, design_naively.py, import_pb_to_tensorboard, pick_test_targets.py, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2
GITHUB quay.io/biocontainers/adapterremoval shpc-registry automated BioContainers addition for adapterremoval AdapterRemoval, perl5.32.1, streamzip
GITHUB quay.io/biocontainers/adapterremovalfixprefix shpc-registry automated BioContainers addition for adapterremovalfixprefix AdapterRemovalFixPrefix, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/adas singularity registry hpc automated addition for adas adas-build, adas-chain, adas-insert, adas-knn, adas-search, usearch
GITHUB quay.io/biocontainers/addrg shpc-registry automated BioContainers addition for addrg addrg, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/admixtools shpc-registry automated BioContainers addition for admixtools convertf, dof4, dof4a, dowtjack, expfit.sh, gcount, getresult, grabpars, jackdiff, kimf, mergeit, mkpretty, numlines, qp3Pop, qp4diff, qpAdm, qpBound, qpDpart, qpDstat, qpF4ratio, qpGraph, qpWave, qpdslow, qpff3base, qpfmv, qpfstats, qpmix, qpreroot, rexpfit.r, rolloff, rolloffp, simpjack2, wtjack.pl, xtractcol, xtractcolv
GITHUB quay.io/biocontainers/admixture shpc-registry automated BioContainers addition for admixture admixture
GITHUB quay.io/biocontainers/adpred shpc-registry automated BioContainers addition for adpred run-adpred, theano-cache, theano-nose, freeze_graph, mako-render, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard
GITHUB quay.io/biocontainers/advntr shpc-registry automated BioContainers addition for advntr adVNTR-Filtering, advntr, unit2, theano-cache, theano-nose, freeze_graph, mako-render, tf_upgrade_v2, muscle, tflite_convert, saved_model_cli, toco
GITHUB quay.io/biocontainers/aegean shpc-registry automated BioContainers addition for aegean canon-gff3, gaeval, genometools-config, gt, locuspocus, parseval, pmrna, tidygff3, xtractore, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, 2to3-3.9, idle3.9, pydoc3.9
GITHUB quay.io/biocontainers/aenum shpc-registry automated BioContainers addition for aenum 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5, wish8.5
GITHUB quay.io/biocontainers/aeon singularity registry hpc automated addition for aeon 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/afpdb singularity registry hpc automated addition for afpdb numpy-config, ipython3, ipython, tabulate, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, pygmentize, normalizer
GITHUB quay.io/biocontainers/afplot shpc-registry automated BioContainers addition for afplot
GITHUB quay.io/biocontainers/afragmenter singularity registry hpc automated addition for afragmenter afragmenter, rich-click, igraph, idle3.13, pydoc3.13, python3.13, python3.13-config, markdown-it, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, glpsol, pygmentize, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, tjbench, opj_compress, opj_decompress
GITHUB quay.io/biocontainers/afterqc shpc-registry automated BioContainers addition for afterqc after.py, barcodeprocesser.py, bubbledetector.py, bubbleprocesser.py, circledetector.py, debubble.py, fastq.py, preprocesser.py, qcreporter.py, qualitycontrol.py, util.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/agat shpc-registry automated BioContainers addition for agat agat_convert_bed2gff.pl, agat_convert_embl2gff.pl, agat_convert_genscan2gff.pl, agat_convert_mfannot2gff.pl, agat_convert_minimap2_bam2gff.pl, agat_convert_sp_gff2bed.pl, agat_convert_sp_gff2gtf.pl, agat_convert_sp_gff2tsv.pl, agat_convert_sp_gff2zff.pl, agat_convert_sp_gxf2gxf.pl, agat_sp_Prokka_inferNameFromAttributes.pl, agat_sp_add_attribute_shortest_exon_size.pl, agat_sp_add_attribute_shortest_intron_size.pl, agat_sp_add_introns.pl, agat_sp_add_start_and_stop.pl, agat_sp_alignment_output_style.pl, agat_sp_clipN_seqExtremities_and_fixCoordinates.pl, agat_sp_compare_two_BUSCOs.pl, agat_sp_compare_two_annotations.pl, agat_sp_complement_annotations.pl, agat_sp_ensembl_output_style.pl, agat_sp_extract_attributes.pl, agat_sp_extract_sequences.pl, agat_sp_filter_by_ORF_size.pl, agat_sp_filter_by_locus_distance.pl, agat_sp_filter_by_mrnaBlastValue.pl, agat_sp_filter_feature_by_attribute_presence.pl, agat_sp_filter_feature_by_attribute_value.pl, agat_sp_filter_feature_from_keep_list.pl, agat_sp_filter_feature_from_kill_list.pl, agat_sp_filter_gene_by_intron_numbers.pl, agat_sp_filter_gene_by_length.pl, agat_sp_filter_incomplete_gene_coding_models.pl, agat_sp_filter_record_by_coordinates.pl, agat_sp_fix_cds_phases.pl, agat_sp_fix_features_locations_duplicated.pl, agat_sp_fix_fusion.pl, agat_sp_fix_longest_ORF.pl, agat_sp_fix_overlaping_genes.pl, agat_sp_fix_small_exon_from_extremities.pl, agat_sp_flag_premature_stop_codons.pl, agat_sp_flag_short_introns.pl, agat_sp_functional_statistics.pl, agat_sp_keep_longest_isoform.pl, agat_sp_kraken_assess_liftover.pl, agat_sp_list_short_introns.pl, agat_sp_load_function_from_protein_align.pl, agat_sp_manage_IDs.pl, agat_sp_manage_UTRs.pl, agat_sp_manage_attributes.pl, agat_sp_manage_functional_annotation.pl, agat_sp_manage_introns.pl, agat_sp_merge_annotations.pl, agat_sp_prokka_fix_fragmented_gene_annotations.pl, agat_sp_sensitivity_specificity.pl, agat_sp_separate_by_record_type.pl, agat_sp_statistics.pl, agat_sp_webApollo_compliant.pl, agat_sq_add_attributes_from_tsv.pl, agat_sq_add_hash_tag.pl, agat_sq_add_locus_tag.pl, agat_sq_count_attributes.pl, agat_sq_filter_feature_from_fasta.pl, agat_sq_list_attributes.pl, agat_sq_manage_IDs.pl, agat_sq_manage_attributes.pl, agat_sq_mask.pl, agat_sq_remove_redundant_entries.pl, agat_sq_repeats_analyzer.pl, agat_sq_reverse_complement.pl, agat_sq_rfam_analyzer.pl, agat_sq_split.pl, agat_sq_stat_basic.pl, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc
GITHUB quay.io/biocontainers/agc singularity registry hpc automated addition for agc agc
GITHUB quay.io/biocontainers/age-metasv shpc-registry automated BioContainers addition for age-metasv age_align
GITHUB quay.io/biocontainers/agfusion shpc-registry automated BioContainers addition for agfusion agfusion, epylint, isort, nose2, nose2-2.7, nose2-3.6, pyensembl, pylint, pyreverse, symilar, coverage, futurize, pasteurize, f2py3.8, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/agg shpc-registry automated BioContainers addition for agg agg
GITHUB quay.io/biocontainers/agouti singularity registry hpc automated addition for agouti agouti, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/agrvate shpc-registry automated BioContainers addition for agrvate agrvate, file, snippy, snippy-clean_full_aln, snippy-core, snippy-multi, snippy-vcf_extract_subs, snippy-vcf_report, snippy-vcf_to_tab, vcfnormalizesvs, vcfnull2ref, vcfunphase, snp-sites, filter-table, spdi2prod, vt, seqkit, plotBfst.R, plotHapLrt.R, plotHaplotypes.R, plotPfst.R, plotSmoothed.R
GITHUB quay.io/biocontainers/airr shpc-registry automated BioContainers addition for airr airr-tools, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/akt shpc-registry automated BioContainers addition for akt akt
GITHUB quay.io/biocontainers/albatradis shpc-registry automated BioContainers addition for albatradis add_tradis_tags, albatradis, albatradis-annotation, albatradis-artemis_project, albatradis-gene_reports, albatradis-presence_absence, albatradis-scatterplot, bacteria_tradis, basqcol, check_tradis_tags, combine_tradis_plots, fetchseq, filter_tradis_tags, mixreads, readstats, remove_tradis_tags, simqual, simread, smalt, splitmates, splitreads, tradis_comparison.R, tradis_essentiality.R, tradis_gene_insert_sites, tradis_merge_plots, tradis_plot, trunkreads, fastaq, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches
GITHUB quay.io/biocontainers/alcor singularity registry hpc automated addition for alcor AlcoR
GITHUB quay.io/biocontainers/alder shpc-registry automated BioContainers addition for alder alder, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/alen singularity registry hpc automated addition for alen alen
GITHUB quay.io/biocontainers/aletsch shpc-registry automated BioContainers addition for aletsch aletsch, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/alevin-fry shpc-registry automated BioContainers addition for alevin-fry alevin-fry
GITHUB quay.io/biocontainers/alfa shpc-registry automated BioContainers addition for alfa alfa, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed
GITHUB quay.io/biocontainers/alfred shpc-registry automated BioContainers addition for alfred alfred, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/aliceasm singularity registry hpc automated addition for aliceasm aliceasm, bcalm, gfatools, graphunzip, paf2gfa, reduce, h5cc
GITHUB quay.io/biocontainers/alientrimmer singularity registry hpc automated addition for alientrimmer alientrimmer, jwebserver, jpackage, cups-config, ippeveprinter, ipptool, hb-info, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo
GITHUB quay.io/biocontainers/align_it shpc-registry automated BioContainers addition for align_it align-it, babel, obchiral, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop
GITHUB quay.io/biocontainers/aligncov singularity registry hpc automated addition for aligncov aligncov, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl
GITHUB quay.io/biocontainers/alignlib-lite shpc-registry automated BioContainers addition for alignlib-lite 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/alignment shpc-registry automated BioContainers addition for alignment 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/alignoth singularity registry hpc automated addition for alignoth alignoth
GITHUB quay.io/biocontainers/alignstats shpc-registry automated BioContainers addition for alignstats alignstats, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/aliview singularity registry hpc automated addition for aliview aliview, aliview-test, jwebserver, jpackage, cups-config, ippeveprinter, ipptool, hb-info, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo
GITHUB quay.io/biocontainers/allhic singularity registry hpc automated addition for allhic allhic
GITHUB quay.io/biocontainers/allo singularity registry hpc automated addition for allo allo, flatc, protoc-24.4.0, h5tools_test_utils, import_pb_to_tensorboard, h5fuse.sh, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, h5delete, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, markdown_py, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen
GITHUB quay.io/biocontainers/altair-mf singularity registry hpc automated addition for altair-mf AltaiR
GITHUB quay.io/biocontainers/altamisa shpc-registry automated BioContainers addition for altamisa isatab2dot, isatab2isatab, isatab_validate, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/alv shpc-registry automated BioContainers addition for alv alv, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/amap shpc-registry automated BioContainers addition for amap amap, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides
GITHUB quay.io/biocontainers/amas shpc-registry automated BioContainers addition for amas AMAS.py, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/amdirt singularity registry hpc automated addition for amdirt AMDirT, streamlit, streamlit.cmd, watchmedo, markdown-it, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, tjbench, gflags_completions.sh, jupyter-kernel, jupyter-kernelspec, jupyter-run, f2py3.11, curve_keygen, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, ipython3
GITHUB quay.io/biocontainers/amiga singularity registry hpc automated addition for amiga amiga, cygdb, cython, cythonize, tabulate, fonttools, pyftmerge, pyftsubset, ttx, brotli, tjbench, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config
GITHUB quay.io/biocontainers/aminoextract singularity registry hpc automated addition for aminoextract AminoExtract, aminoextract, markdown-it, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, pygmentize, python3.1
GITHUB quay.io/biocontainers/amos shpc-registry automated BioContainers addition for amos AMOScmp, AMOScmp-shortReads, AMOScmp-shortReads-alignmentTrimmed, Bundler, Chainer, FRCurve, FilterEdgesByCluster, Joiner, Linearize, MarkRepeats, Minimo, OrientContigs, OutputMotifs, OutputResults, OutputScaffolds, RankMotifs, ace2contig, agp2amos, amos2ace, amos2frg, amos2mates, amos2sq, amosvalidate, analyze-read-depth, analyzeSNPs, arachne2ctg, arachne2scaff, arrive, arrive2, asmQC, asmQC2, assembleRNAs, astats, bank-clean, bank-combine, bank-mapping, bank-report, bank-transact, bank-tutorial, bank-unlock, bank2contig, bank2coverage, bank2fasta, bank2lib, bank2sam, bank2scaff, benchmark2arachne, benchmark2ca, benchmark2mates, benchmark2ta, benchmark_qual, benchmark_seq, blasr2coords, blat2nucmer, ca2ctg, ca2mates, ca2scaff, ca2singletons, ca2ta, casm-breaks, casm-layout, castats, cavalidate, cestat-cov, cgb2ctg, clk, clusterSnps, contig-cmp, contig2contig, coords2cam, count-kmers, count-qmers, ctg2fasta, ctg2umdcontig, ctgovl, cvgChop, cvgStat, delta2clr, delta2cvg, dumpContigsAsReads, dumpFeatures, dumpmates, dumpreads, excl_seqs, extractContig, extractScaffold, fasta_select_len, fasta_to_fastq, fastq64_to_fastq33, fastq_filter, fastq_rename, fastq_to_fasta_fast, fastqqc, filter_contig, filter_seq, filterfrg, find-duplicate-reads, find-query-breaks, find-tandem, findChimeras, findMissingMates, findTcovSnp, find_ends, fixfastq, fixfrg, fixlib, frg-umd-merge, frg2fasta, frg2fastq, frg2ta, gap-links, gc-content-plot, gccontent, gene_asm, genome-complexity, genome-complexity-fast, getFRCvalues, getN50, getlengths, goBambus2, grow-readbank, hash-overlap, insert-sizes, iterate, kmer-count, kmer-cov, kmer-cov-plot, kmers, ktrimfrg, library-histogram, list-linked-contigs, listGCContent, listReadPlacedStatus, listSingletonMates, listSurrogates, listcontigreads, load-overlaps, loadFeatures, make-consensus, make-consensus_poly, merge-contigs, message-count, message-extract, message-validate, minimus, minimus2, minimus2-blat, missing-reads, normalizeScaffold, nucmer2ovl, nucmerAnnotate, olapsFromContig, overlap-align, ovl-degr-dist, ovl2OVL, parsecasm, partitionBank, phd2afg, postCAqc, preTA, preassembleFrgs, printScaff, pullTArchive, pyrosim, qmer-filter, read-cov-plot, readinfo2cam, rearrangeSeqs, recallConsensus, renameReads, rerunMultiTest, resetFragLibrary, revFasta, revScaffold, runAmos, runMultiTest, runTA, runTest, running-cmp, samPileupConsensus, samtoafg, scaff2fasta, scaffoldRange2Ungapped, select-reads, show-ma-asm, shuffleBank, sidebyside, sim-cover-depth, sim-cover2, sim-shotgun, simple-overlap, simpleContigLoader, simplifyLibraries, singles, sort2, stats, summarizeMultiTest, suspiciousfeat2region, ta2ace, tab2ovls, tagsum-reduce, tandemCollapse, tarchive2amos, tarchive2ca, tigger, tiling2cam, toAmos, toAmos_new, toArachne, trace_comment, trace_comments, trace_convert, trace_scf_dump, trace_seq, translate-fasta, trimByOvl, trimends, trimfrg, untangle, updateBankPositions, updateClrRanges, updateDeltaClr, updateLibSizes, vecfix, verify-layout, jellyfish, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer
GITHUB quay.io/biocontainers/ampcombi shpc-registry automated BioContainers addition for ampcombi amp_database.py, amp_fasta.py, ampcombi, ampcombi.py, check_input.py, diamond_alignment.sh, diamond_makedb.sh, print_header.py, reformat_tables.py, diamond, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/ampd-up singularity registry hpc automated addition for ampd-up AMPd-Up, ninja, convert-caffe2-to-onnx, convert-onnx-to-caffe2, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, f2py3.6, futurize, pasteurize, protoc, 2to3-3.6, idle3.6, pydoc3.6, python3.6
GITHUB quay.io/biocontainers/amplici singularity registry hpc automated addition for amplici run_AmpliCI
GITHUB quay.io/biocontainers/amplicon_coverage_plot shpc-registry automated BioContainers addition for amplicon_coverage_plot amplicov, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/ampliconclassifier shpc-registry automated BioContainers addition for ampliconclassifier amplicon_classifier.py, amplicon_similarity.py, amplicons_intersecting_bed.py, feature_similarity.py, make_input.sh, make_results_table.py, softlink_images.py, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp
GITHUB quay.io/biocontainers/ampliconsuite singularity registry hpc automated addition for ampliconsuite AmpliconSuite-pipeline.py, GroupedAnalysisAmpSuite.py, cnvkit.py, hb-info, flask, tjbench, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, qualfa2fq.pl, xa2multi.pl, bwa, futurize, pasteurize, fasta-sanitize.pl, plot-ampliconstats, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, f2py3.10, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl
GITHUB quay.io/biocontainers/amplicontyper singularity registry hpc automated addition for amplicontyper check_for_update.py, classifier_report.py, classify, classify.py, data_classes.py, genotyper_utilities, genotyper_utilities.py, hierarchy_utils.py, html_head.txt, input_processing.py, inputs_validation.py, map.py, model_manager.py, read_classifier.py, reporting_classes.py, train, train.py, x86_64-conda-linux-gnu.cfg, annot-tsv, numpy-config, sdust, paftools.js, k8, minimap2, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fasta-sanitize.pl, plot-ampliconstats, tqdm, normalizer, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite
GITHUB quay.io/biocontainers/amplify shpc-registry automated BioContainers addition for amplify AMPlify, train_amplify, theano-cache, theano-nose, freeze_graph, mako-render, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, markdown_py
GITHUB quay.io/biocontainers/ampligone singularity registry hpc automated addition for ampligone AmpliGone, ampligone, minimap2.py, cmark, pygmentize, futurize, pasteurize, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/amplisim singularity registry hpc automated addition for amplisim amplisim
GITHUB quay.io/biocontainers/amptk shpc-registry automated BioContainers addition for amptk amptk, amptk_synthetic_mock.py, bold2utax.py, distro, pyfastx, biom, FastTree-2.1.10.c, vsearch, FastTreeMP, FastTree, fasttree, mafft-sparsecore.rb, einsi, fftns, fftnsi
GITHUB quay.io/biocontainers/amulety singularity registry hpc automated addition for amulety amulety, datasets-cli, huggingface-cli, identify-cli, nodeenv, pre-commit, protoc-28.3.0, torchfrtrace, transformers-cli, typer, xxh3sum, virtualenv, checksum-profile, elastishadow, pybind11-config, get_gprof, torch_shm_manager, xxh128sum, xxh32sum, xxh64sum, xxhsum, isympy, torchrun, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, get_objgraph, undill, elasticurl, elasticurl_cpp, elastipubsub, markdown-it, csv-import, orc-memory, orc-scan
GITHUB quay.io/biocontainers/amused shpc-registry automated BioContainers addition for amused AMUSED, AMUSED-KS, alignKMers, bundle, bundler, racc, racc2y, shuffleCodons.rb, shuffleCodonsAddMotifs.rb, y2racc, gdbm_dump, gdbm_load, gdbmtool, jemalloc-config, jeprof, jemalloc.sh, erb, gem, irb, rake
GITHUB quay.io/biocontainers/anadama2 shpc-registry automated BioContainers addition for anadama2 anadama2_aws_batch_task, ptangle, pweave, pweave-convert, pypublish, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run, iptest3, curve_keygen, iptest, ipython3, ipython, jupyter-trust
GITHUB quay.io/biocontainers/ananse shpc-registry automated BioContainers addition for ananse GenomeOntology.pl, HomerConfig.pm, HomerSVGLogo.pm, ProSampler, SIMA.pl, Statistics.pm, XXmotif, addData.pl, addDataHeader.pl, addGeneAnnotation.pl, addInternalData.pl, addOligos.pl, adjustPeakFile.pl, adjustRedunGroupFile.pl, analyzeChIP-Seq.pl, analyzeHiC, analyzeRNA.pl, analyzeRepeats.pl, ananse, annotateInteractions.pl, annotatePeaks.pl, annotateRelativePosition.pl, annotateTranscripts.pl, assignGeneWeights.pl, assignGenomeAnnotation, assignTSStoGene.pl, batchAnnotatePeaksHistogram.pl, batchFindMotifs.pl, batchFindMotifsGenome.pl, batchMakeHiCMatrix.pl, batchMakeMultiWigHub.pl, batchMakeTagDirectory.pl, batchParallel.pl, bed2DtoUCSCbed.pl, bed2pos.pl, bed2tag.pl, bedToGenePred, bigBedToBed, blat2gtf.pl, bridgeResult2Cytoscape.pl, changeNewLine.pl, checkPeakFile.pl, checkTagBias.pl, chopUpBackground.pl, chopUpPeakFile.pl, chopify.pl, cleanUpPeakFile.pl, cleanUpSequences.pl, cluster2bed.pl, cluster2bedgraph.pl, combineGO.pl, combineHubs.pl, combine_peaks, compareMotifs.pl, condenseBedGraph.pl, cons2fasta.pl, conservationAverage.pl, conservationPerLocus.pl, convertCoordinates.pl, convertIDs.pl, convertOrganismID.pl, coverage_table, dinamo, dreme-py3, dtc, duplicateCol.pl, eland2tags.pl, fasta-dinucleotide-shuffle-py3, fasta-hamming-enrich-py3, fasta-re-match, fasta2tab.pl, fastq2fasta.pl, filterListBy.pl, filterTADsAndCPs.pl, filterTADsAndLoops.pl, findGO.pl, findGOtxt.pl, findHiCCompartments.pl, findHiCDomains.pl, findHiCInteractionsByChr.pl, findKnownMotifs.pl, findMotifs.pl, findMotifsGenome.pl, findPeaks, findRedundantBLAT.pl, findTADsAndLoops.pl, findTADsAndLoopsFromRelMatrix, findTopMotifs.pl, findcsRNATSS.pl, flipPC1toMatch.pl, freq2group.pl, gadem, genePredToBed, genePredToGtf, genericConvertIDs.pl, genomeOntology, genomepy, getChrLengths.pl, getConservedRegions.pl, getDiffExpression.pl, getDifferentialBedGraph.pl, getDifferentialPeaks, getDifferentialPeaksReplicates.pl, getDistalPeaks.pl, getFocalPeaks.pl, getGWASoverlap.pl, getGenesInCategory.pl, getGenomeTilingPeaks, getHiCcorrDiff.pl, getHomerQCstats.pl, getLikelyAdapters.pl, getMappableRegions, getMappingStats.pl, getPartOfPromoter.pl, getPeakTags, getPos.pl, getRandomReads.pl, getSiteConservation.pl, getTopPeaks.pl, gff2pos.pl, gff3ToGenePred, gimme, go2cytoscape.pl, groupSequences.pl, gtfToGenePred, homer, homer2, homerTools, joinFiles.pl, lightning_predict, lightning_train, loadGenome.pl, loadPromoters.pl, makeBigBedMotifTrack.pl, makeBigWig.pl, makeBinaryFile.pl, makeHiCWashUfile.pl, makeMetaGeneProfile.pl, makeMultiWigHub.pl, makeTagDirectory, makeUCSCfile, map-fastq.pl, meme-chip_html_to_tsv, merge2Dbed.pl, mergeData.pl, mergePeaks, momo, motif2Jaspar.pl, motif2Logo.pl, parseGTF.pl, plasma_store_server, pos2bed.pl, prepForR.pl, preparseGenome.pl, profile2seq.pl, qseq2fastq.pl, randRemoveBackground.pl, randomizeGroupFile.pl, randomizeMotifs.pl, removeAccVersion.pl, removeBadSeq.pl, removeOutOfBoundsReads.pl, removePoorSeq.pl, removeRedundantPeaks.pl, renamePeaks.pl, resizePosFile.pl, revoppMotif.pl, rotateHiCmatrix.pl, runHiCpca.pl, sam2spliceJunc.pl, scanMotifGenomeWide.pl, scrambleFasta.pl, selectRepeatBg.pl, seq2profile.pl, subtractBedGraphs.pl, subtractBedGraphsDirectory.pl, tab2fasta.pl, tag2bed.pl, tag2pos.pl, tagDir2HiCsummary.pl, tagDir2bed.pl, tagDir2hicFile.pl, thrift, trawler, weeder2, xsltproc_lite, zipHomerResults.pl, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip
GITHUB quay.io/biocontainers/anansescanpy singularity registry hpc automated addition for anansescanpy hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, tjbench, aec, scanpy, numba, pycc, natsort, fonttools, pyftmerge, pyftsubset, ttx, normalizer, tqdm, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug
GITHUB quay.io/biocontainers/anansnake singularity registry hpc automated addition for anansnake anansnake, bedToGenePred, bsdcat, bsdcpio, bsdtar, conda2solv, deseq2science, dumpsolv, genePredToBed, genePredToGtf, genomepy, gff3ToGenePred, gtfToGenePred, installcheck, mamba, mamba-package, matplotlib, mergesolv, pysradb, repo2solv, seq2science, testsolv, nosetests-3.9, conda-env, cph, plac_runner.py, yte, docutils, nosetests, pulptest, cbc, clp, vcf_sample_filter.py, vcf_filter.py, vcf_melt, snakemake, snakemake-bash-completion, tabulate, jupyter-trust, faidx, jupyter, jupyter-migrate, jupyter-troubleshoot, my_print_defaults, mysql_config, perror, rst2html4.py
GITHUB quay.io/biocontainers/anarci shpc-registry automated BioContainers addition for anarci ANARCI, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat
GITHUB quay.io/biocontainers/ancestry_hmm-s shpc-registry automated BioContainers addition for ancestry_hmm-s ahmm-s
GITHUB quay.io/biocontainers/anchorwave shpc-registry automated BioContainers addition for anchorwave anchorwave, anchorwave_avx2, anchorwave_avx512, anchorwave_sse2, anchorwave_sse4.1, atoiindex, bulk-counts, cmetindex, configure, cpuid, dbsnp_iit, ensembl_genes, fa_coords, get-genome, gff3_genes, gff3_introns, gff3_splicesites, gmap.nosimd, gmap.sse42, gmap_build, gmap_cat, gmap_process, gmapindex, gmapl, gmapl.nosimd, gmapl.sse42, gsnap, gsnap.nosimd, gsnap.sse42, gsnapl, gsnapl.nosimd, gsnapl.sse42, gtf_genes, gtf_introns, gtf_splicesites, gtf_transcript_splicesites, gvf_iit, iit_dump, iit_get, iit_store, indexdb_cat, md_coords, psl_genes, psl_introns, psl_splicesites, sam_sort, sc-counts, snpindex, trindex, vcf_iit, velocity-counts, gmap, sdust, paftools.js, minimap2, k8, perl5.32.1, streamzip
GITHUB quay.io/biocontainers/andi shpc-registry automated BioContainers addition for andi andi, gsl-randist
GITHUB quay.io/biocontainers/anglerfish shpc-registry automated BioContainers addition for anglerfish anglerfish, sdust, paftools.js, minimap2, k8, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/angsd shpc-registry automated BioContainers addition for angsd NGSadmix, angsd, contamination, contamination2, haploToPlink, ibs, msHOT2glf, msToGlf, ngsPSMC, printIcounts, realSFS, scounts, smartCount, splitgl, supersim, thetaStat, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/aniclustermap singularity registry hpc automated addition for aniclustermap ANIclustermap, f2py3.11, skani, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fastANI, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc
GITHUB quay.io/biocontainers/anise_basil shpc-registry automated BioContainers addition for anise_basil anise, basil, filter_basil.py, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv
GITHUB quay.io/biocontainers/aniso8601 shpc-registry automated BioContainers addition for aniso8601 easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5
GITHUB quay.io/biocontainers/anndata shpc-registry automated BioContainers addition for anndata natsort, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, h5clear
GITHUB quay.io/biocontainers/anndata2ri shpc-registry automated BioContainers addition for anndata2ri dunamai, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, natsort, mirror_server, mirror_server_stop
GITHUB quay.io/biocontainers/annembed singularity registry hpc automated addition for annembed annembed
GITHUB quay.io/biocontainers/annonars singularity registry hpc automated addition for annonars annonars
GITHUB quay.io/biocontainers/annosine2 singularity registry hpc automated addition for annosine2 RM2Bed.py, annosine2, buildRMLibFromEMBL.pl, buildSummary.pl, corepack, h5tools_test_utils, irf, makeclusterdb, maskFile.pl, wublastToCrossmatch.pl, DateRepeats, DupMasker, ProcessRepeats, RepeatMasker, RepeatProteinMask, calcDivergenceFromAlign.pl, createRepeatLandscape.pl, dupliconToSVG.pl, getRepeatMaskerBatch.pl, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, trfMask, npx, rmblastn, node, npm, blast_report, blastdb_convert, blastdb_path, trf, h5fuse.sh, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl
GITHUB quay.io/biocontainers/annotsv singularity registry hpc automated addition for annotsv AnnotSV, INSTALL_annotations.sh, variantconvert, funzip, unzipsfx, zipgrep, zipinfo, unzip, f2py3.11, gff2gff.py, vcf_sample_filter.py, basenc, vcf_filter.py, vcf_melt, b2sum, ls, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp
GITHUB quay.io/biocontainers/annotwg singularity registry hpc automated addition for annotwg annotwg, bash, bashbug, cutGenome, egrep, fgrep, grep, gff2gff.py, gawk-5.1.0, basenc, awk, b2sum, gawk, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd
GITHUB quay.io/biocontainers/anospp-analysis singularity registry hpc automated addition for anospp-analysis anospp-prep, anospp-qc, tjbench, cutadapt, FastTreeMP, FastTree, fasttree, igzip, pbunzip2, pbzcat, pbzip2, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns, mafft-fftnsi, mafft-ginsi, mafft-homologs.rb, mafft-linsi, mafft-nwns, mafft-nwnsi, mafft-profile
GITHUB quay.io/biocontainers/ansible shpc-registry automated BioContainers addition for ansible ansible, ansible-doc, ansible-galaxy, ansible-playbook, ansible-pull, ansible-vault, smtpd.pyc, easy_install-2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5
GITHUB quay.io/biocontainers/ant shpc-registry automated BioContainers addition for ant ant, ant.bat, ant.cmd, antRun, antRun.bat, antRun.pl, antenv.cmd, complete-ant-cmd.pl, envset.cmd, lcp.bat, runant.pl, runant.py, runrc.cmd, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/antarna shpc-registry automated BioContainers addition for antarna antarna.py, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex
GITHUB quay.io/biocontainers/antismash-lite shpc-registry automated BioContainers addition for antismash-lite antismash, download-antismash-databases, hmmalign2, hmmbuild2, hmmc2, hmmcalibrate2, hmmconvert2, hmmemit2, hmmerfm-exactmatch, hmmfetch2, hmmindex2, hmmpfam2, hmmsearch2, less2scss, pyscss, xsltproc_lite, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip
GITHUB quay.io/biocontainers/antismash shpc-registry automated BioContainers addition for antismash antismash, download-antismash-databases, hmmalign2, hmmbuild2, hmmc2, hmmcalibrate2, hmmconvert2, hmmemit2, hmmerfm-exactmatch, hmmfetch2, hmmindex2, hmmpfam2, hmmsearch2, less2scss, pyscss, xsltproc_lite, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip
GITHUB quay.io/biocontainers/anvio-minimal shpc-registry automated BioContainers addition for anvio-minimal anvi-analyze-synteny, anvi-cluster-contigs, anvi-compute-ani, anvi-compute-completeness, anvi-compute-functional-enrichment, anvi-compute-functional-enrichment-across-genomes, anvi-compute-functional-enrichment-in-pan, anvi-compute-gene-cluster-homogeneity, anvi-compute-genome-similarity, anvi-compute-metabolic-enrichment, anvi-db-info, anvi-delete-collection, anvi-delete-functions, anvi-delete-hmms, anvi-delete-misc-data, anvi-delete-state, anvi-dereplicate-genomes, anvi-display-contigs-stats, anvi-display-functions, anvi-display-metabolism, anvi-display-pan, anvi-display-structure, anvi-estimate-genome-completeness, anvi-estimate-genome-taxonomy, anvi-estimate-metabolism, anvi-estimate-scg-taxonomy, anvi-estimate-trna-taxonomy, anvi-experimental-organization, anvi-export-collection, anvi-export-contigs, anvi-export-functions, anvi-export-gene-calls, anvi-export-gene-coverage-and-detection, anvi-export-items-order, anvi-export-locus, anvi-export-misc-data, anvi-export-splits-and-coverages, anvi-export-splits-taxonomy, anvi-export-state, anvi-export-structures, anvi-export-table, anvi-gen-contigs-database, anvi-gen-fixation-index-matrix, anvi-gen-gene-consensus-sequences, anvi-gen-gene-level-stats-databases, anvi-gen-genomes-storage, anvi-gen-network, anvi-gen-phylogenomic-tree, anvi-gen-structure-database, anvi-gen-variability-matrix, anvi-gen-variability-network, anvi-gen-variability-profile, anvi-get-aa-counts, anvi-get-codon-frequencies, anvi-get-pn-ps-ratio, anvi-get-sequences-for-gene-calls, anvi-get-sequences-for-gene-clusters, anvi-get-sequences-for-hmm-hits, anvi-get-short-reads-from-bam, anvi-get-short-reads-mapping-to-a-gene, anvi-get-split-coverages, anvi-get-tlen-dist-from-bam, anvi-help, anvi-import-collection, anvi-import-functions, anvi-import-items-order, anvi-import-misc-data, anvi-import-state, anvi-import-taxonomy-for-genes, anvi-import-taxonomy-for-layers, anvi-init-bam, anvi-inspect, anvi-interactive, anvi-matrix-to-newick, anvi-mcg-classifier, anvi-merge, anvi-merge-bins, anvi-merge-trnaseq, anvi-meta-pan-genome, anvi-migrate, anvi-oligotype-linkmers, anvi-pan-genome, anvi-plot-trnaseq, anvi-profile, anvi-profile-blitz, anvi-push, anvi-refine, anvi-rename-bins, anvi-report-inversions, anvi-report-linkmers, anvi-run-hmms, anvi-run-interacdome, anvi-run-kegg-kofams, anvi-run-ncbi-cogs, anvi-run-pfams, anvi-run-scg-taxonomy, anvi-run-trna-taxonomy, anvi-run-workflow, anvi-scan-trnas, anvi-script-add-default-collection, anvi-script-augustus-output-to-external-gene-calls, anvi-script-checkm-tree-to-interactive, anvi-script-compute-ani-for-fasta, anvi-script-compute-bayesian-pan-core, anvi-script-enrichment-stats, anvi-script-estimate-genome-size, anvi-script-filter-fasta-by-blast, anvi-script-filter-hmm-hits-table, anvi-script-fix-homopolymer-indels, anvi-script-gen-CPR-classifier, anvi-script-gen-distribution-of-genes-in-a-bin, anvi-script-gen-functions-per-group-stats-output, anvi-script-gen-genomes-file, anvi-script-gen-help-pages, anvi-script-gen-hmm-hits-matrix-across-genomes, anvi-script-gen-programs-network, anvi-script-gen-programs-vignette, anvi-script-gen-pseudo-paired-reads-from-fastq, anvi-script-gen-scg-domain-classifier, anvi-script-gen-short-reads, anvi-script-gen_stats_for_single_copy_genes.R, anvi-script-gen_stats_for_single_copy_genes.py, anvi-script-gen_stats_for_single_copy_genes.sh, anvi-script-get-collection-info, anvi-script-get-coverage-from-bam, anvi-script-get-hmm-hits-per-gene-call, anvi-script-get-primer-matches, anvi-script-merge-collections, anvi-script-permute-trnaseq-seeds, anvi-script-pfam-accessions-to-hmms-directory, anvi-script-predict-CPR-genomes, anvi-script-process-genbank, anvi-script-process-genbank-metadata, anvi-script-reformat-fasta, anvi-script-run-eggnog-mapper, anvi-script-snvs-to-interactive, anvi-script-tabulate, anvi-script-transpose-matrix, anvi-script-variability-to-vcf, anvi-script-visualize-split-coverages, anvi-search-functions, anvi-search-palindromes, anvi-search-sequence-motifs, anvi-self-test, anvi-setup-interacdome, anvi-setup-kegg-kofams, anvi-setup-ncbi-cogs, anvi-setup-pdb-database, anvi-setup-pfams, anvi-setup-scg-taxonomy, anvi-setup-trna-taxonomy, anvi-show-collections-and-bins, anvi-show-misc-data, anvi-split, anvi-summarize, anvi-summarize-blitz, anvi-tabulate-trnaseq, anvi-trnaseq, anvi-update-db-description, anvi-update-structure-database, anvi-upgrade, average_nucleotide_identity.py, bottle.py, delta_filter_wrapper.py, django-admin, django-admin.py, genbank_get_genomes_by_taxon.py, iu-compute-qual-dicts-from-fastq, iu-deinterleave-fastq, iu-demultiplex, iu-fasta-to-fastq, iu-fastq-to-fasta, iu-filter-merged-reads, iu-filter-quality-bokulich, iu-filter-quality-minoche, iu-gen-configs, iu-gen-matching-fastq-files, iu-interleave-fastq, iu-merge-pairs, iu-remove-ids-from-fastq, iu-subsample-fastq, iu-trim-V6-primers, iu-trim-fastq, iu-visualize-mismatch-distribution, iu-visualize-plot-dicts, iu-visualize-qual-dicts, sqlformat, filter-table, spdi2prod, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb
GITHUB quay.io/biocontainers/anvio shpc-registry automated BioContainers addition for anvio EukHighConfidenceFilter, anvi-analyze-synteny, anvi-cluster-contigs, anvi-compute-ani, anvi-compute-completeness, anvi-compute-gene-cluster-homogeneity, anvi-compute-genome-similarity, anvi-db-info, anvi-delete-collection, anvi-delete-hmms, anvi-delete-misc-data, anvi-delete-state, anvi-dereplicate-genomes, anvi-display-contigs-stats, anvi-display-pan, anvi-display-structure, anvi-estimate-genome-completeness, anvi-estimate-genome-taxonomy, anvi-estimate-scg-taxonomy, anvi-experimental-organization, anvi-export-collection, anvi-export-contigs, anvi-export-functions, anvi-export-gene-calls, anvi-export-gene-coverage-and-detection, anvi-export-items-order, anvi-export-locus, anvi-export-misc-data, anvi-export-splits-and-coverages, anvi-export-splits-taxonomy, anvi-export-state, anvi-export-structures, anvi-export-table, anvi-gen-contigs-database, anvi-gen-fixation-index-matrix, anvi-gen-gene-consensus-sequences, anvi-gen-gene-level-stats-databases, anvi-gen-genomes-storage, anvi-gen-network, anvi-gen-phylogenomic-tree, anvi-gen-structure-database, anvi-gen-variability-matrix, anvi-gen-variability-network, anvi-gen-variability-profile, anvi-get-aa-counts, anvi-get-codon-frequencies, anvi-get-enriched-functions-per-pan-group, anvi-get-sequences-for-gene-calls, anvi-get-sequences-for-gene-clusters, anvi-get-sequences-for-hmm-hits, anvi-get-short-reads-from-bam, anvi-get-short-reads-mapping-to-a-gene, anvi-get-split-coverages, anvi-help, anvi-import-collection, anvi-import-functions, anvi-import-items-order, anvi-import-misc-data, anvi-import-state, anvi-import-taxonomy-for-genes, anvi-import-taxonomy-for-layers, anvi-init-bam, anvi-inspect, anvi-interactive, anvi-matrix-to-newick, anvi-mcg-classifier, anvi-merge, anvi-merge-bins, anvi-meta-pan-genome, anvi-migrate, anvi-oligotype-linkmers, anvi-pan-genome, anvi-profile, anvi-push, anvi-refine, anvi-rename-bins, anvi-report-linkmers, anvi-run-hmms, anvi-run-ncbi-cogs, anvi-run-pfams, anvi-run-scg-taxonomy, anvi-run-workflow, anvi-scan-trnas, anvi-script-FASTA-to-contigs-db, anvi-script-add-default-collection, anvi-script-calculate-pn-ps-ratio, anvi-script-checkm-tree-to-interactive, anvi-script-compute-ani-for-fasta, anvi-script-estimate-genome-size, anvi-script-filter-fasta-by-blast, anvi-script-gen-CPR-classifier, anvi-script-gen-distribution-of-genes-in-a-bin, anvi-script-gen-hmm-hits-matrix-across-genomes, anvi-script-gen-programs-network, anvi-script-gen-programs-vignette, anvi-script-gen-scg-domain-classifier, anvi-script-gen-short-reads, anvi-script-gen_stats_for_single_copy_genes.R, anvi-script-gen_stats_for_single_copy_genes.py, anvi-script-gen_stats_for_single_copy_genes.sh, anvi-script-get-collection-info, anvi-script-get-coverage-from-bam, anvi-script-get-hmm-hits-per-gene-call, anvi-script-get-short-reads-matching-something, anvi-script-merge-collections, anvi-script-predict-CPR-genomes, anvi-script-process-genbank, anvi-script-process-genbank-metadata, anvi-script-reformat-fasta, anvi-script-run-eggnog-mapper, anvi-script-run-functional-enrichment-stats, anvi-script-snvs-to-interactive, anvi-script-transpose-matrix, anvi-script-variability-to-vcf, anvi-script-visualize-split-coverages, anvi-search-functions, anvi-self-test, anvi-setup-ncbi-cogs, anvi-setup-pdb-database, anvi-setup-pfams, anvi-setup-scg-databases, anvi-show-collections-and-bins, anvi-show-misc-data, anvi-split, anvi-summarize, anvi-threshold-taxonomy, anvi-update-db-description, anvi-update-structure-database, anvi-upgrade, average_nucleotide_identity.py, bottle.py, calc-prorate, centrifuge, centrifuge-BuildSharedSequence.pl, centrifuge-RemoveEmptySequence.pl, centrifuge-RemoveN.pl, centrifuge-build, centrifuge-build-bin, centrifuge-class, centrifuge-compress.pl, centrifuge-download, centrifuge-inspect, centrifuge-inspect-bin, centrifuge-kreport, centrifuge-sort-nt.pl, centrifuge_evaluate.py, centrifuge_simulate_reads.py, cheroot, cherryd, covels-SE, coves-SE, delta_filter_wrapper.py, django-admin, django-admin.py, eufindtRNA, fasta2gsi, genbank_get_genomes_by_taxon.py, iu-compute-qual-dicts-from-fastq, iu-deinterleave-fastq, iu-demultiplex, iu-fasta-to-fastq, iu-fastq-to-fasta, iu-filter-merged-reads, iu-filter-quality-bokulich, iu-filter-quality-minoche, iu-gen-configs, iu-gen-matching-fastq-files, iu-interleave-fastq, iu-merge-pairs, iu-remove-ids-from-fastq, iu-subsample-fastq, iu-trim-V6-primers, iu-trim-fastq, iu-visualize-mismatch-distribution, iu-visualize-plot-dicts, iu-visualize-qual-dicts, sqlformat, sstofa, tRNAscan-SE, tRNAscan-SE.conf, trnascan-1.4, readal, statal, trimal, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, megahit, megahit_toolkit, bl2seq, blastall
GITHUB quay.io/biocontainers/any2fasta shpc-registry automated BioContainers addition for any2fasta any2fasta, perl5.32.0, streamzip
GITHUB quay.io/biocontainers/aodp shpc-registry automated BioContainers addition for aodp aodp, x86_64-conda_cos7-linux-gnu-ld, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches
GITHUB quay.io/biocontainers/aplanat shpc-registry automated BioContainers addition for aplanat aplanat, font-awesome-to-png, icon-font-to-png, bokeh, markdown_py, f2py3.10, chardetect, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10
GITHUB quay.io/biocontainers/apoc shpc-registry automated BioContainers addition for apoc apoc
GITHUB quay.io/biocontainers/apollo shpc-registry automated BioContainers addition for apollo arrow, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py
GITHUB quay.io/biocontainers/appspam shpc-registry automated BioContainers addition for appspam appspam
GITHUB quay.io/biocontainers/aprfinder singularity registry hpc automated addition for aprfinder aprfinder
GITHUB quay.io/biocontainers/apscale singularity registry hpc automated addition for apscale apscale, csv-import, demultiplexer, orc-memory, orc-scan, psghelp, psgissue, psgmain, psgsettings, psgupgrade, psgver, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, cutadapt, vsearch, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, protoc, tqdm, f2py3.9
GITHUB quay.io/biocontainers/apt-probeset-summarize shpc-registry automated BioContainers addition for apt-probeset-summarize apt-probeset-summarize
GITHUB quay.io/biocontainers/aptardi shpc-registry automated BioContainers addition for aptardi aptardi, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, pyrsa-decrypt, pyrsa-encrypt
GITHUB quay.io/biocontainers/apu-label-propagation singularity registry hpc automated addition for apu-label-propagation apu-label-propagation
GITHUB quay.io/biocontainers/aquamis shpc-registry automated BioContainers addition for aquamis aquamis, aquamis_setup.sh, bracken, bracken-build, combine_bracken_outputs.py, confindr, confindr.py, confindr_create_db, confindr_database_setup, create_sampleSheet.sh, est_abundance.py, filter_json.py, generate_kmer_distribution.py, genson, helper_functions.py, icarus.py, kma, kma_index, kma_shm, kma_update, kmer2read_distr, kraken2, kraken2-build, kraken2-inspect, lighter, metaquast, metaquast.py, mlst, parse_json.py, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, shovill, skesa, taxonkit, write_QC_report.Rmd, write_report.Rmd, kmutate.sh, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, rsync-ssl, runhmm.sh, circos, circos.exe, compile.bat, compile.make
GITHUB quay.io/biocontainers/aquila shpc-registry automated BioContainers addition for aquila Aquila_assembly_based_variants_call, Aquila_clean, Aquila_phasing_all_variants, Aquila_step0_sortbam, Aquila_step0_sortbam_multilibs, Aquila_step1, Aquila_step1_multilibs, Aquila_step2, paftools.js, minimap2, k8, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m
GITHUB quay.io/biocontainers/aquila_stlfr shpc-registry automated BioContainers addition for aquila_stlfr Aquila_stLFR_assembly_based_variants_call, Aquila_stLFR_clean, Aquila_stLFR_fastq_preprocess, Aquila_stLFR_phasing_all_variants, Aquila_stLFR_step1, Aquila_stLFR_step2, Aquila_step0_sortbam_hybrid, Aquila_step1_hybrid, paftools.js, minimap2, k8, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m
GITHUB quay.io/biocontainers/aquila_sv shpc-registry automated BioContainers addition for aquila_sv AquilaSV_step1, AquilaSV_step2, AquilaSV_step3, sdust, paftools.js, minimap2, k8, fasta-sanitize.pl, plot-ampliconstats, f2py3.9, ace2sam, blast2sam.pl, bowtie2sam.pl
GITHUB quay.io/biocontainers/aquila_umap shpc-registry automated BioContainers addition for aquila_umap aquila_umap, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, 2to3-3.7
GITHUB quay.io/biocontainers/aquilasv shpc-registry automated BioContainers addition for aquilasv AquilaSV_step1, AquilaSV_step2, AquilaSV_step3, cds-mapping-stats, cds-subgraphs, mag-improve, spades-convert-bin-to-fasta, spades-gsimplifier, spades-kmer-estimating, spades-read-filter, spaligner, spades-bwa, spades-core
GITHUB quay.io/biocontainers/aragorn shpc-registry automated BioContainers addition for aragorn aragorn
GITHUB quay.io/biocontainers/arb-bio-devel shpc-registry automated BioContainers addition for arb-bio-devel DrawGram.jar, DrawTree.jar, arb, arb_2_ascii, arb_2_bin, arb_a2ps, arb_bootstrap, arb_clean, arb_consensus_tree, arb_convert_aln, arb_db_server, arb_dist, arb_dnapars, arb_dnarates, arb_echo, arb_edit4, arb_export_rates, arb_export_tree, arb_fastdnaml, arb_flush_mem, arb_gene_probe, arb_help2xml, arb_help_useredit.sh, arb_ign, arb_installubuntu4arb.sh, arb_launcher, arb_ludwig, arb_macsetup, arb_message, arb_naligner, arb_name_server, arb_nexus2newick.awk, arb_notify, arb_ntree, arb_panic, arb_pars, arb_phylo, arb_phyml, arb_primer, arb_probe, arb_proml, arb_proto_2_xsub, arb_protpars, arb_pt_server, arb_raxml, arb_read_tree, arb_readlink, arb_readseq, arb_remote, arb_repair, arb_replace, arb_rexec, arb_rnacma, arb_sed, arb_sleep, arb_textedit, arb_textprint, arb_trace, arb_treegen, arb_wait, arb_wetc, arb_who, clique, consense, contml, contrast, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, dollop, dolmove, dolpenny, drawgram, drawgram_gui, drawtree, drawtree_gui, fig2dev, fig2ps2tex, fitch, gendist, kitsch, mb, mb-mpi, mix, move, mwm, neighbor, ompi-dvm, ompi-ps, ompi-top, orte-dvm, orte-ps, orte-top, pars, penny, phylip, phyml, phyml-mpi, pic2tpic, proml, promlk, protdist, protpars, prun, restdist, restml, retree, seqboot, transfig, treedist, uil, xfig, xmbind, gnuplot, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, FastTree-2.1.10.c, oshCC, oshc++
GITHUB quay.io/biocontainers/arb-bio-tools shpc-registry automated BioContainers addition for arb-bio-tools arb_2_ascii, arb_2_bin, arb_a2ps, arb_consensus_tree, arb_convert_aln, arb_db_server, arb_dnarates, arb_export_rates, arb_export_tree, arb_flush_mem, arb_gene_probe, arb_help2xml, arb_message, arb_naligner, arb_name_server, arb_notify, arb_primer, arb_probe, arb_proto_2_xsub, arb_pt_server, arb_read_tree, arb_readseq, arb_replace, arb_rnacma, arb_treegen, gio-launch-desktop
GITHUB quay.io/biocontainers/arb-bio shpc-registry automated BioContainers addition for arb-bio DrawGram.jar, DrawTree.jar, arb, arb_2_ascii, arb_2_bin, arb_a2ps, arb_bootstrap, arb_clean, arb_consensus_tree, arb_convert_aln, arb_db_server, arb_dist, arb_dnapars, arb_dnarates, arb_echo, arb_edit4, arb_export_rates, arb_export_tree, arb_fastdnaml, arb_flush_mem, arb_gene_probe, arb_help2xml, arb_help_useredit.sh, arb_ign, arb_installubuntu4arb.sh, arb_launcher, arb_ludwig, arb_macsetup, arb_message, arb_naligner, arb_name_server, arb_nexus2newick.awk, arb_notify, arb_ntree, arb_panic, arb_pars, arb_phylo, arb_phyml, arb_primer, arb_probe, arb_proml, arb_proto_2_xsub, arb_protpars, arb_pt_server, arb_raxml, arb_read_tree, arb_readlink, arb_readseq, arb_remote, arb_repair, arb_replace, arb_rexec, arb_rnacma, arb_sed, arb_sleep, arb_textedit, arb_textprint, arb_trace, arb_treegen, arb_wait, arb_wetc, arb_who, clique, consense, contml, contrast, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, dollop, dolmove, dolpenny, drawgram, drawgram_gui, drawtree, drawtree_gui, fig2dev, fig2ps2tex, fitch, gendist, kitsch, mb, mb-mpi, mix, move, mwm, neighbor, ompi-dvm, ompi-ps, ompi-top, orte-dvm, orte-ps, orte-top, pars, penny, phylip, phyml, phyml-mpi, pic2tpic, proml, promlk, protdist, protpars, prun, restdist, restml, retree, seqboot, transfig, treedist, uil, xfig, xmbind, gnuplot, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, FastTree-2.1.10.c, oshCC, oshc++
GITHUB quay.io/biocontainers/arborator singularity registry hpc automated addition for arborator arborator, gas, profile_dists, cpuinfo, h5tools_test_utils, cmtime, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, mckey, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, ucmatose, udaddy, udpong, io_demo
GITHUB quay.io/biocontainers/arboreto shpc-registry automated BioContainers addition for arboreto dask-scheduler, dask-ssh, dask-worker, bokeh, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/arcas-hla shpc-registry automated BioContainers addition for arcas-hla arcasHLA, git-lfs, kallisto, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown
GITHUB quay.io/biocontainers/archer shpc-registry automated BioContainers addition for archer archer
GITHUB quay.io/biocontainers/architeuthis singularity registry hpc automated addition for architeuthis architeuthis, taxonkit
GITHUB quay.io/biocontainers/arcs shpc-registry automated BioContainers addition for arcs arcs, arcs-make, long-to-linked-pe
GITHUB quay.io/biocontainers/arcsv singularity registry hpc automated addition for arcsv ArcSV, BKinCheck.pl, BKinCheck_len.pl, bed2pos, createClip.sh, extractBK_bam.sh, extractSoftclipped, fastqToBKS.pl, filter_PopSpec_AF.sh, find_record.sh, format_header.txt, gen_pop_bed.sh, generateBKSinArc.sh, generateBKSinArc_each.sh, generateBKSinBam.pl, generateBKSinBam.sh, generateBKSinBam_each.sh, getSoftclippedAndNearbySeq.py, getfastq.sh, pos2bed, transDeepMEI2BK.sh, gff2gff.py, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, build_env_setup.sh, shiftBed, conda_build.sh, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed
GITHUB quay.io/biocontainers/arem shpc-registry automated BioContainers addition for arem arem, elandexport2bed, elandmulti2bed, elandresult2bed, wignorm, sam2bed, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/argh shpc-registry automated BioContainers addition for argh easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5
GITHUB quay.io/biocontainers/argnorm singularity registry hpc automated addition for argnorm argnorm, pronto, py.test, pytest, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config
GITHUB quay.io/biocontainers/argopy singularity registry hpc automated addition for argopy h5tools_test_utils, nc3tonc4, nc4tonc3, ncinfo, httpx, h5fuse.sh, h5delete, zipcmp, zipmerge, ziptool, 2to3-3.12, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff
GITHUB quay.io/biocontainers/argparse2tool shpc-registry automated BioContainers addition for argparse2tool argparse2tool, argparse2tool_check_path, futurize, pasteurize, xslt-config, xsltproc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/args_oap singularity registry hpc automated addition for args_oap args_oap, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, diamond, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl
GITHUB quay.io/biocontainers/argutils shpc-registry automated BioContainers addition for argutils 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/aria2 shpc-registry automated BioContainers addition for aria2 aria2c
GITHUB quay.io/biocontainers/ariba shpc-registry automated BioContainers addition for ariba ariba, bwa-spades, corrector, dipspades, dipspades.py, hammer, ionhammer, scaffold_correction, spades, fastaq, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div, cd-hit-div.pl, cd-hit-est-2d, cd-hit-para.pl, clstr2tree.pl
GITHUB quay.io/biocontainers/array-as-vcf shpc-registry automated BioContainers addition for array-as-vcf aav, array-as-vcf, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/arriba shpc-registry automated BioContainers addition for arriba arriba, convert_fusions_to_vcf.sh, draw_fusions.R, extract_fusion-supporting_alignments.sh, quantify_virus_expression.sh, run_arriba.sh, run_arriba_on_prealigned_bam.sh, STAR, STARlong, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long
GITHUB quay.io/biocontainers/arrow shpc-registry automated BioContainers addition for arrow easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5
GITHUB quay.io/biocontainers/art shpc-registry automated BioContainers addition for art art_454, art_SOLiD, art_illumina
GITHUB quay.io/biocontainers/artemis shpc-registry automated BioContainers addition for artemis act, art, bamview, dnaplotter, writedb_entry, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/artex singularity registry hpc automated addition for artex artex, artex.py, clair3.py, libclair3.c, libclair3.o, longphase, pypy, pypy3, pypy3.6, run_clair3.sh, whatshap, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex, rst2xml, cpuinfo, gdbm_dump, gdbm_load, gdbmtool, import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, gff2gff.py, tf_upgrade_v2, pt2to3, ptdump, ptrepack, pttree, tflite_convert
GITHUB quay.io/biocontainers/artic-porechop shpc-registry automated BioContainers addition for artic-porechop porechop, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv
GITHUB quay.io/biocontainers/artic-tools shpc-registry automated BioContainers addition for artic-tools artic-tools, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/artic shpc-registry automated BioContainers addition for artic align_trim, align_trim_n, artic, artic-tools, artic_fasta_header, artic_get_stats, artic_make_depth_mask, artic_mask, artic_vcf_filter, artic_vcf_merge, check_compression, compress_fast5, demux_fast5, fast5_subset, hdf2tf.py, longshot, margin_cons, margin_cons_medaka, medaka, medaka_consensus, medaka_counts, medaka_data_path, medaka_haploid_variant, medaka_version_report, mini_align, multi_to_single_fast5, nanopolish, nanopolish_makerange.py, nanopolish_merge.py, porechop, rich-click, single_to_multi_fast5, vcfextract, whatshap, multiqc, minimap2.py, racon, rampler, racon_wrapper, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin
GITHUB quay.io/biocontainers/arvados-cli shpc-registry automated BioContainers addition for arvados-cli arv, arv-crunch-job, arv-run-pipeline-instance, arv-tag, google-api, launchy, erb, gem, irb, rake, rdoc, ri, ruby, easy_install-3.5, 2to3-3.5, idle3.5
GITHUB quay.io/biocontainers/arvados-cwl-runner shpc-registry automated BioContainers addition for arvados-cwl-runner arv-copy, arv-federation-migrate, arv-get, arv-keepdocker, arv-ls, arv-migrate-docker19, arv-normalize, arv-put, arv-ws, arvados-cwl-runner, bagit.py, cwl-runner, prov-compare, prov-convert, cwltool, schema-salad-doc, schema-salad-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, doesitcache, coloredlogs
GITHUB quay.io/biocontainers/arvados-python-client shpc-registry automated BioContainers addition for arvados-python-client arv-copy, arv-federation-migrate, arv-get, arv-keepdocker, arv-ls, arv-migrate-docker19, arv-normalize, arv-put, arv-ws, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, futurize, pasteurize, 2to3-3.8, idle3.8
GITHUB quay.io/biocontainers/ascat shpc-registry automated BioContainers addition for ascat
GITHUB quay.io/biocontainers/asciigenome shpc-registry automated BioContainers addition for asciigenome ASCIIGenome, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/asgal singularity registry hpc automated addition for asgal SpliceAwareAligner, asgal, asgal_BitVector.py, asgal_SplicingGraph.py, asgal_detectEvents.py, asgal_formatSAM.py, asgal_utils.py, dimacs-solver, dimacs-to-lgf, lemon-0.x-to-1.x.sh, lgf-gen, salmon, gffutils-cli, cbc, clp, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, fasta-sanitize.pl, plot-ampliconstats, f2py3.10, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite
GITHUB quay.io/biocontainers/ashlar singularity registry hpc automated addition for ashlar aomdec, aomenc, ashlar, dav1d, make_alignment_movie, preview_slide, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, aec, imageio_download_bin, imageio_remove_bin, skivi, fitscopy, fpack, funpack, imcopy, smem, cups-config, ippeveprinter, ipptool, fonttools, pyftmerge, pyftsubset
GITHUB quay.io/biocontainers/ashleys-qc singularity registry hpc automated addition for ashleys-qc ashleys, py.test, pytest, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc, transicc
GITHUB quay.io/biocontainers/askocli shpc-registry automated BioContainers addition for askocli askocli, chardetect, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/asn2gb shpc-registry automated BioContainers addition for asn2gb asn2gb, idn
GITHUB quay.io/biocontainers/aspera-cli singularity registry hpc automated addition for aspera-cli ascli, ascp, asession, aspera-license, rbs, rdbg, typeprof, racc, bundle, bundler, gdbm_dump, gdbm_load, gdbmtool, erb, gem, irb, rake, rdoc, ri, ruby
GITHUB quay.io/biocontainers/asqcan shpc-registry automated BioContainers addition for asqcan asqcan, blobtools, blobtools-build_nodesdb, icarus.py, metaquast, metaquast.py, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, circos, circos.exe, compile.bat, compile.make, gddiag, glimmerhmm, glimmhmm.pl, list.modules, test.modules, trainGlimmerHMM
GITHUB quay.io/biocontainers/assemblerflow shpc-registry automated BioContainers addition for assemblerflow assemblerflow, nextflow, nextflow.bak, giffilter, gifsponge, gifecho, gifinto, basenc, b2sum, base32, base64, basename, cat
GITHUB quay.io/biocontainers/assembly-scan shpc-registry automated BioContainers addition for assembly-scan assembly-scan, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/assembly-stats shpc-registry automated BioContainers addition for assembly-stats assembly-stats
GITHUB quay.io/biocontainers/assembly_finder singularity registry hpc automated addition for assembly_finder ascli, ascp, asession, aspera-license, assembly_finder, rbs, rdbg, typeprof, racc, bundle, bundler, mpg123, mpg123-id3dump, mpg123-strip, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, libgcrypt-config, mpicalc, yat2m, gdbm_dump, gdbm_load, gdbmtool, lame, erb, gem, irb, rake, rdoc, ri, ruby
GITHUB quay.io/biocontainers/assemblycomparator2 singularity registry hpc automated addition for assemblycomparator2 asscom2, bsdunzip, eido, jsondiff, jsonpatch, jsonpointer, protoc-24.3.0, mamba-package, conda2solv, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, bsdcat, bsdcpio, bsdtar, conda-env, cph, markdown-it, stone, yte, plac_runner.py, docutils, pulptest, cbc, clp, humanfriendly, snakemake, snakemake-bash-completion, jp.py
GITHUB quay.io/biocontainers/assemblytics shpc-registry automated BioContainers addition for assemblytics Assemblytics, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot
GITHUB quay.io/biocontainers/astalavista shpc-registry automated BioContainers addition for astalavista astalavista, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/aster singularity registry hpc automated addition for aster asterisk, astral, astral-pro
GITHUB quay.io/biocontainers/astral-tree singularity registry hpc automated addition for astral-tree astral, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs, pack200, rmic, rmid, unpack200, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo
GITHUB quay.io/biocontainers/astropy shpc-registry automated BioContainers addition for astropy fits2bitmap, fitscheck, fitsdiff, fitsheader, fitsinfo, samp_hub, showtable, volint, wcslint, py.test, pytest, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7
GITHUB quay.io/biocontainers/atactk shpc-registry automated BioContainers addition for atactk make_cut_matrix, make_midpoint_matrix, measure_features, measure_signal, plot_aggregate_cut_matrix.R, plot_aggregate_midpoint_matrix.R, plot_signal.R, trim_adapters, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, x86_64-conda-linux-gnu-gfortran.bin, pyvenv
GITHUB quay.io/biocontainers/ataqv shpc-registry automated BioContainers addition for ataqv ataqv, mkarv, srvarv, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown
GITHUB quay.io/biocontainers/athena_meta shpc-registry automated BioContainers addition for athena_meta Makefile, Makefile.am, Makefile.in, athena-meta, bazel-scan.py, fa2fq, fa2fq.o, filter_blat, filter_blat.o, filter_contigs, filter_contigs.o, filterfa, filterfa.o, flye, flye-assemble, flye-minimap2, flye-polish, flye-repeat, fq2fa, fq2fa.o, idba, idba.o, idba_hybrid, idba_hybrid.o, idba_subasm, idba_subasm.o, idba_tran, idba_tran.o, idba_tran_test, idba_tran_test.o, idba_ud, idba_ud.o, ipcluster, ipcontroller, ipengine, iptest2, ipython2, parallel_blat, parallel_blat.o, parallel_rna_blat, parallel_rna_blat.o, print_graph, print_graph.o, raw_n50, raw_n50.o, run-unittest.py, sample_reads, sample_reads.o, scaffold, scaffold.o, scan.py, shuffle_reads, shuffle_reads.o, sim_reads, sim_reads.o, sim_reads_tran, sim_reads_tran.o, sort_psl, sort_psl.o, sort_reads, sort_reads.o, split_fa, split_fa.o, split_fq, split_fq.o, split_scaffold, split_scaffold.o, test.o, validate_blat, validate_blat_parallel, validate_blat_parallel_local, validate_blat_parallel_rna, validate_component, validate_component.o, validate_contigs_blat, validate_contigs_blat.o, validate_contigs_mummer, validate_contigs_mummer.o, validate_mummer, validate_reads_blat, validate_reads_blat.o, validate_rna, validate_rna.o, jupyter-kernel, jupyter-kernelspec, jupyter-run, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py
GITHUB quay.io/biocontainers/atlas-data-import shpc-registry automated BioContainers addition for atlas-data-import data_import_post_install_tests.bats, data_import_post_install_tests.sh, get_experiment_data.R, import_classification_data.R, metadata_conda_debug.yaml, build_env_setup.sh, conda_build.sh, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/atlas-fastq-provider shpc-registry automated BioContainers addition for atlas-fastq-provider abi-dump.2.11.0, abi-load, abi-load.2, abi-load.2.11.0, align-cache.2.11.0, align-info.2.11.0, atlas-fastq-provider-config.sh, atlas-fastq-provider-functions.sh, atlas-fastq-provider-post-install-tests.sh, bam-load.2.11.0, bam2fastq, bam_add_tags, bam_annotate.sh, bam_umi_count, bash, bashbug, cache-mgr.2.11.0, ccextract, ccextract.2, ccextract.2.11.0, cg-load.2.11.0, deinterleave_fastq.sh, fasterq-dump-orig.2.11.0, fasterq-dump.2.11.0, fastq-dump-orig.2.11.0, fastq-dump.2.11.0, fastq-load, fastq-load.2, fastq-load.2.11.0, fastq2bam, fastq_filter_n, fastq_filterpair, fastq_info, fastq_not_empty, fastq_num_reads, fastq_pre_barcodes, fastq_split_interleaved, fastq_tests, fastq_trim_poly_at, fastq_truncate, fastq_validator.sh, fetchEnaLibraryFastqs.sh, fetchFastq.sh, helicos-load, helicos-load.2, helicos-load.2.11.0, illumina-dump.2.11.0, illumina-load, illumina-load.2, illumina-load.2.11.0, initialiseEnaProbe.sh, kar.2.11.0, kdbmeta.2.11.0, kget.2.11.0, latf-load.2.11.0, md5cp.2.11.0, pacbio-load, pacbio-load.2, pacbio-load.2.11.0, pacbio-loadxml, pacbio-loadxml.2, pacbio-loadxml.2.11.0, prefetch-orig.2.11.0, prefetch.2.11.0, rcexplain.2.11.0, read-filter-redact.2.11.0, sam-dump-orig.2.11.0, sam-dump.2.11.0, sff-dump.2.11.0, sff-load, sff-load.2, sff-load.2.11.0, sra-pileup-orig.2.11.0, sra-pileup.2.11.0, sra-sort-cg.2.11.0, sra-sort.2.11.0, sra-stat.2.11.0, srapath-orig.2.11.0, srapath.2.11.0, sratools.2.11.0, srf-load, srf-load.2, srf-load.2.11.0, test-sra.2.11.0, validateUri.sh, vdb-config.2.11.0, vdb-copy.2.11.0, vdb-decrypt.2.11.0, vdb-diff.2.11.0, vdb-dump-orig.2.11.0, vdb-dump.2.11.0, vdb-encrypt.2.11.0, vdb-lock.2.11.0, vdb-passwd.2.11.0, vdb-unlock.2.11.0, vdb-validate.2.11.0, align-cache.2, md5cp.2, read-filter-redact.2, sra-sort-cg.2, vdb-diff.2, align-cache, fasterq-dump-orig, fastq-dump-orig, md5cp, prefetch-orig
GITHUB quay.io/biocontainers/atlas-gene-annotation-manipulation shpc-registry automated BioContainers addition for atlas-gene-annotation-manipulation gtf2featureAnnotation.R
GITHUB quay.io/biocontainers/atlas-metadata-validator shpc-registry automated BioContainers addition for atlas-metadata-validator atlas_validation.py, chardetect, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/atlas shpc-registry automated BioContainers addition for atlas atlas
GITHUB quay.io/biocontainers/atropos shpc-registry automated BioContainers addition for atropos atropos, tqdm, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/attotree singularity registry hpc automated addition for attotree attotree, quicktree, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config
GITHUB quay.io/biocontainers/augur shpc-registry automated BioContainers addition for augur augur, dsdp5, treetime, vcftools, iqtree, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, FastTree-2.1.10.c, FastTreeMP, cmpfillin
GITHUB quay.io/biocontainers/augustus shpc-registry automated BioContainers addition for augustus PF00225_full.blocks.txt, PF00225_seed.blocks.txt, SplicedAlignment.pm, aa2nonred.pl, add_name_to_gff3.pl, aln2wig, augustify.py, augustus, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, bam2wig, bamToWig.py, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, cdbfasta, cdbyank, cegma2gff.pl, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, compare_masking.pl, compileSpliceCands, computeFlankingRegion.pl, createAugustusJoblist.pl, del_from_prfl.pl, evalCGP.pl, eval_dualdecomp.pl, eval_multi_gtf.pl, executeTestCGP.py, exonerate2hints.pl, exoniphyDb2hints.pl, extractAnno.py, extractTranscriptEnds.pl, filter-ppx.pl, filterGenes.pl, filterGenesIn.pl, filterGenesIn_mRNAname.pl, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, findGffNamesInFasta.pl, findRepetitiveProtSeqs.py, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, getAnnoFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, getSeq, get_loci_from_gb.pl, gff2gbSmallDNA.pl, gff2ps_mycustom, gffGetmRNA.pl, gp2othergp.pl, gtf2aa.pl, gtf2gff.pl, gth2gtf.pl, hal2maf_split.pl, helpMod.pm, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, load2sqlitedb, lp_solve, maf2conswig.pl, makeMatchLists.pl, makeUtrTrainingSet.pl, maskNregions.pl, merge_masking.pl, moveParameters.pl, msa2prfl.pl, new_species.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, peptides2alternatives.pl, peptides2hints.pl, phastconsDB2hints.pl, polyA2hints.pl, pp_simScore, prints2prfl.pl, pslMap.pl, randomSplit.pl, rename_species.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, samMap.pl, scipiogff2gff.pl, setStopCodonFreqs.pl, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, splitMfasta.pl, split_wiggle.pl, stringtie2fa.py, summarizeACGTcontent.pl, transMap2hints.pl, uniquePeptides.pl, utrgff2gbrowse.pl, utrrnaseq, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, yaml2gff.1.4.pl, bam2hints, etraining, fastBlockSearch, filterBam, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign, twoBitInfo, faToTwoBit
GITHUB quay.io/biocontainers/auriclass singularity registry hpc automated addition for auriclass auriclass, dmypy, mypy, mypyc, stubgen, stubtest, pyfastx, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, py.test, pytest, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config
GITHUB quay.io/biocontainers/auspice shpc-registry automated BioContainers addition for auspice auspice, corepack, node, npm, npx
GITHUB quay.io/biocontainers/authentict singularity registry hpc automated addition for authentict AuthentiCT, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, normalizer, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl
GITHUB quay.io/biocontainers/autobigs-cli singularity registry hpc automated addition for autobigs-cli autoBIGS, idle3.13, pydoc3.13, python3.13, python3.13-config, numpy-config
GITHUB quay.io/biocontainers/autobigs-engine singularity registry hpc automated addition for autobigs-engine idle3.13, pydoc3.13, python3.13, python3.13-config, numpy-config
GITHUB quay.io/biocontainers/autocycler singularity registry hpc automated addition for autocycler autocycler
GITHUB quay.io/biocontainers/autodock-vina shpc-registry automated BioContainers addition for autodock-vina vina, vina_split
GITHUB quay.io/biocontainers/autodock shpc-registry automated BioContainers addition for autodock autodock4, autodock4.omp
GITHUB quay.io/biocontainers/autogenes shpc-registry automated BioContainers addition for autogenes get_objgraph, undill, natsort, mirror_server, mirror_server_stop, f2py3.9, opj_compress, opj_decompress, opj_dump, h5clear
GITHUB quay.io/biocontainers/autogrid singularity registry hpc automated addition for autogrid autogrid4
GITHUB quay.io/biocontainers/autolog shpc-registry automated BioContainers addition for autolog 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv
GITHUB quay.io/biocontainers/automappa singularity registry hpc automated addition for automappa automappa, autometa-bedtools-genomecov, autometa-benchmark, autometa-binning, autometa-binning-ldm, autometa-binning-ldm-loginfo, autometa-binning-summary, autometa-config, autometa-coverage, autometa-download-dataset, autometa-hmmsearch-filter, autometa-kmers, autometa-length-filter, autometa-markers, autometa-orfs, autometa-taxonomy, autometa-taxonomy-lca, autometa-taxonomy-majority-vote, autometa-unclustered-recruitment, autometa-update-databases, dash-generate-components, dash-update-components, editorconfig, gdown, js-beautify, renderer, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, doesitcache, flask, diamond, ipython3, parsort, ipython, cygdb, cython, cythonize, numba, pycc, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh
GITHUB quay.io/biocontainers/autometa shpc-registry automated BioContainers addition for autometa autometa, autometa-bedtools-genomecov, autometa-benchmark, autometa-binning, autometa-binning-ldm, autometa-binning-ldm-loginfo, autometa-binning-summary, autometa-config, autometa-coverage, autometa-download-dataset, autometa-hmmsearch-filter, autometa-kmers, autometa-length-filter, autometa-markers, autometa-orfs, autometa-taxonomy, autometa-taxonomy-lca, autometa-taxonomy-majority-vote, autometa-unclustered-recruitment, autometa-update-databases, gdown, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, doesitcache, ipython3, diamond, parsort
GITHUB quay.io/biocontainers/aviary singularity registry hpc automated addition for aviary Xcalcmem.sh, aviary, bloomfilterparser.sh, bsdcat, bsdcpio, bsdtar, conda2solv, dumpsolv, installcheck, mamba, mamba-package, mergesolv, repo2solv, testsolv, kmutate.sh, runhmm.sh, stone, conda-env, cph, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, plac_runner.py, sketchblacklist2.sh, splitribo.sh, yte, addssu.sh, adjusthomopolymers.sh, analyzeaccession.sh, analyzegenes.sh, applyvariants.sh, bbcms.sh, bloomfilter.sh, callgenes.sh, comparegff.sh
GITHUB quay.io/biocontainers/avro-cwl shpc-registry automated BioContainers addition for avro-cwl avro, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/avro-python2 shpc-registry automated BioContainers addition for avro-python2 avro, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/avro-python3 shpc-registry automated BioContainers addition for avro-python3 avro, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/avro shpc-registry automated BioContainers addition for avro avro, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5
GITHUB quay.io/biocontainers/awscli shpc-registry automated BioContainers addition for awscli aws, aws.cmd, aws_completer, aws_zsh_completer.sh, pyrsa-decrypt-bigfile, pyrsa-encrypt-bigfile, jp.py, easy_install-3.5, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify
GITHUB quay.io/biocontainers/axiome shpc-registry automated BioContainers addition for axiome axiome, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/b2b-utils singularity registry hpc automated addition for b2b-utils DrawGram.jar, DrawTree.jar, TMalign, TMscore, attr, balsam, bam2consensus, bgzip.pl, blast2diamond, boot2frac, bstats, bundle, bundler, clique, comppair, consense, contml, contrast, conus_compare, conus_train, dca, decode_sam_flag, dialign-tx, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, dollop, dolmove, dolpenny, drawgram, drawgram_gui, drawtree, drawtree_gui, dumpsexp, fakealigner, faketree, famsa, fasta2nexus, fasta2phylip, fasttreeMP, fitch, fq_deinterleave, fq_interleave, frag_lens, gb2fasta, gendist, getfattr, gpg-error, gpgrt-config, guess_ill_instrument, hmac256, hmmeralign, hmmerbuild, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, hyperopt-mongo-worker, jackd, kalign, kitsch, lame, libgcrypt-config, lprodump, lrelease-pro, lstopo, lstopo-no-graphics, lupdate-pro, make_pscores.pl, matplotlib, meshdebug, minimeta, mix, move, mpg123, mpg123-id3dump, mpg123-strip, mpicalc, mustang, ncbi_blast_update, neighbor, opal.jar, orc-bugreport, orcc, out123, pModel, pa-info, pacat, pacmd, pactl, padaligner, padsp, pamon, paplay, parec, parecord, pars, pasuspender, penny, phylip, poa, probcons, probconsRNA, proml, promlk, protdist, protpars, pulseaudio, qbin, qmlformat, qmltime, qmltyperegistrar, qpaeq, racc, randtree, raxml, raxmlp, rbs, rdbg, restdist, restml, retree, rm_chim, rm_gaps, run_pasta.py, run_pasta_gui.py, run_seqtools.py, sap, scompare, seq_diff, seqboot, setfattr, sfold, shrink_bedgraph, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, strain_ml, summarize_assembly, sync_reads, tracegen, treedist, typeprof, uc, yat2m, clustalo, flac, gdbm_dump, gdbm_load, gdbmtool, metaflac, prank, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, aec, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb
GITHUB quay.io/biocontainers/b2btools shpc-registry automated BioContainers addition for b2btools torchrun, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, protoc, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli
GITHUB quay.io/biocontainers/bacgwasim shpc-registry automated BioContainers addition for bacgwasim BacGWASim, SimBac, gcta64, plink, snp-sites, stone, dendropy-format, x86_64-conda-linux-gnu-pkg-config, pulptest, Magick++-config, MagickCore-config, MagickWand-config, animate, composite
GITHUB quay.io/biocontainers/backports.csv shpc-registry automated BioContainers addition for backports.csv easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5
GITHUB quay.io/biocontainers/backports.unittest_mock shpc-registry automated BioContainers addition for backports.unittest_mock pbr, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config
GITHUB quay.io/biocontainers/backspinpy shpc-registry automated BioContainers addition for backspinpy backspin, futurize, pasteurize, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6
GITHUB quay.io/biocontainers/bacphlip shpc-registry automated BioContainers addition for bacphlip bacphlip, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/bactopia-assembler singularity registry hpc automated addition for bactopia-assembler assembly-scan, bactopia-assembler, check_compression, compress_fast5, coronaspades.py, demux_fast5, dragonflye, fast5_subset, flye, flye-minimap2, flye-modules, flye-samtools, hdf2tf.py, lighter, medaka, medaka_consensus, medaka_counts, medaka_data_path, medaka_haploid_variant, medaka_version_report, metaplasmidspades.py, metaviralspades.py, mini_align, miniasm, minidot, multi_to_single_fast5, nanoq, polypolish, polypolish_insert_filter.pxd, polypolish_insert_filter.py, porechop, rasusa, raven, rnaviralspades.py, shovill, shovill-se, single_to_multi_fast5, skesa, unicycler, whatshap, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, fastp, flash, megahit, megahit_toolkit, pilon, minimap2.py, samclip, velvetg, velveth, any2fasta, kmc, kmc_dump, kmc_tools, racon, rampler, racon_wrapper, estimator_ckpt_converter, docutils, cds-mapping-stats, cds-subgraphs, google-oauthlib-tool, mag-improve
GITHUB quay.io/biocontainers/bactopia-gather singularity registry hpc automated addition for bactopia-gather Xcalcmem.sh, abi-dump.3, abi-dump.3.0.3, align-info.3, align-info.3.0.3, aln2bed.pl, art_454, art_SOLiD, art_illumina, art_profiler_454, art_profiler_illumina, bactopia-gather, bloomfilterparser.sh, cache-mgr.3, cache-mgr.3.0.3, check-assembly-accession.py, check-corrupt, check-corrupt.3, check-corrupt.3.0.3, check-fastqs.py, combinedAvg.pl, empDist.pl, executor, fasterq-dump-orig.3.0.3, fasterq-dump.3, fasterq-dump.3.0.3, fastq-dl, fastq-dump-orig.3.0.3, fastq-dump.3, fastq-dump.3.0.3, fastq-scan, fastqReadAvg.pl, gimme_taxa.py, illumina-dump.3, illumina-dump.3.0.3, kdbmeta.3, kdbmeta.3.0.3, map2bed.pl, markdown-it, ncbi-genome-download, ngd, ngs-pileup, ngs-pileup.3, ngs-pileup.3.0.3, prefetch-orig.3.0.3, prefetch.3, prefetch.3.0.3, pysradb, rcexplain.3, rcexplain.3.0.3, ref-variation, ref-variation.3, ref-variation.3.0.3, rich-click, sam-dump-orig.3.0.3, sam-dump.3, sam-dump.3.0.3, sff-dump.3, sff-dump.3.0.3, sra-pileup-orig.3.0.3, sra-pileup.3, sra-pileup.3.0.3, sra-search, sra-search.3, sra-search.3.0.3, sra-stat.3, sra-stat.3.0.3, srapath-orig.3.0.3, srapath.3, srapath.3.0.3, sratools.3, sratools.3.0.3, summation.pl, test-sra.3, test-sra.3.0.3, var-expand, var-expand.3, var-expand.3.0.3, vdb-config.3, vdb-config.3.0.3, vdb-decrypt.3, vdb-decrypt.3.0.3, vdb-dump-orig.3.0.3, vdb-dump.3, vdb-dump.3.0.3, vdb-encrypt.3, vdb-encrypt.3.0.3, vdb-validate.3, vdb-validate.3.0.3, kmutate.sh, runhmm.sh, fasterq-dump-orig, fastq-dump-orig, prefetch-orig, sam-dump-orig, sra-pileup-orig, srapath-orig, kmerposition.sh, reformatpb.sh, sratools, summarizecoverage.sh, uuid, uuid-config, abi-dump, align-info, alltoall.sh, analyzesketchresults.sh, cache-mgr, comparessu.sh, fasterq-dump, fastq-dump, filtersilva.sh, illumina-dump, kdbmeta
GITHUB quay.io/biocontainers/bactopia-py singularity registry hpc automated addition for bactopia-py bactopia-citations, bactopia-download, bactopia-prepare, bactopia-search, bactopia-summary, executor, markdown-it, pysradb, rich-click, f2py3.11, coloredlogs, humanfriendly, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, pygmentize, xslt-config, xsltproc, tqdm, normalizer, python3.1
GITHUB quay.io/biocontainers/bactopia-qc singularity registry hpc automated addition for bactopia-qc NanoPlot, Xcalcmem.sh, bactopia-qc, bloomfilterparser.sh, check-fastqs.py, csv-import, elasticurl, elasticurl_cpp, elastipubsub, fastq-scan, kaleido, lighter, mathjax-path, nanoq, orc-memory, orc-scan, porechop, produce_x_platform_fuzz_corpus, rasusa, run_x_platform_fuzz_corpus, timezone-dump, kmutate.sh, runhmm.sh, fastp, kmerposition.sh, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, reformatpb.sh, sha256_profile, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, rename, sketchblacklist2.sh, splitribo.sh, addssu.sh, adjusthomopolymers.sh, analyzeaccession.sh, analyzegenes.sh, applyvariants.sh, bbcms.sh
GITHUB quay.io/biocontainers/bactopia-sketcher singularity registry hpc automated addition for bactopia-sketcher bactopia-sketcher, sourmash, screed, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd, df
GITHUB quay.io/biocontainers/bactopia-teton singularity registry hpc automated addition for bactopia-teton alpha_diversity.py, bactopia-teton, beta_diversity.py, bracken, bracken-build, combine_bracken_outputs.py, combine_kreports.py, combine_mpa.py, est_abundance.py, extract_kraken_reads.py, fastq-scan, filter_bracken.out.py, fix_unmapped.py, generate_kmer_distribution.py, kmer2read_distr, kraken-bracken-summary.py, kraken2, kraken2-build, kraken2-inspect, kreport2krona.py, kreport2mpa.py, ktClassifyHits, ktImportHits, make_kreport.py, make_ktaxonomy.py, rsync-ssl, ktClassifyBLAST, ktGetContigMagnitudes, ktGetLCA, ktGetLibPath, ktGetTaxIDFromAcc, ktGetTaxInfo, ktImportBLAST, ktImportDiskUsage, ktImportEC, ktImportFCP, ktImportGalaxy, ktImportKrona, ktImportMETAREP-BLAST, ktImportMETAREP-EC, ktImportMGRAST, ktImportPhymmBL, ktImportRDP, ktImportRDPComparison, ktImportTaxonomy, ktImportText, ktImportXML, ktUpdateTaxonomy.sh, rsync, xxh128sum
GITHUB quay.io/biocontainers/bactopia-variants singularity registry hpc automated addition for bactopia-variants RNAmultifold, TMalign, bactopia-variants, cleanup-coverage.py, make_pscores.pl, mask-consensus.py, poa, sam_add_rg.pl, snippy, snippy-clean_full_aln, snippy-core, snippy-multi, snippy-vcf_extract_subs, snippy-vcf_report, snippy-vcf_to_tab, split_ref_by_bai_datasize.py, update_version.sh, vcf-annotator, snp-sites, clustalo, vt, rename, tabix++, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb, impala, makemat, megablast, samclip, any2fasta, snpEff, bamleftalign, bc, coverage_to_regions.py, dc, fasta_generate_regions.py, freebayes-parallel
GITHUB quay.io/biocontainers/bactopia shpc-registry automated BioContainers addition for bactopia amr_report, amrfinder, amrfinder_update, ariba, bactopia, bactopia-citations.py, bactopia-datasets.py, bactopia-download.py, bactopia-prepare.py, bactopia-search.py, bsdcat, bsdcpio, bsdtar, check-assembly-accession.py, check-fastqs.py, cleanup-coverage.py, conda2solv, dna_mutation, dumpsolv, executor, fasta2parts, fasta_check, fasta_extract, gff_check, gimme_taxa.py, installcheck, mamba, mamba-package, mask-consensus.py, merge-blast-json.py, mergesolv, mlst-blast.py, ncbi-genome-download, nextflow, nextflow.bak, ngd, repo2solv, select-references.py, split-coverages.py, staphopia, testsolv, conda-env, cph, fastaq, funzip, unzipsfx, zipgrep, zipinfo, FET.pl, cd-hit-clstr_2_blm8.pl, cds-mapping-stats
GITHUB quay.io/biocontainers/baczy singularity registry hpc automated addition for baczy baczy, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex, rst2xml, yte, plac_runner.py, docutils, pulptest, snakemake-bash-completion, snakemake, cbc, clp, humanfriendly, numpy-config, tabulate, jupyter-trust, jupyter, jupyter-migrate, jupyter-troubleshoot
GITHUB quay.io/biocontainers/badread shpc-registry automated BioContainers addition for badread badread, edlib-aligner, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc
GITHUB quay.io/biocontainers/baitfisher shpc-registry automated BioContainers addition for baitfisher BaitFilter, BaitFisher
GITHUB quay.io/biocontainers/bakdrive shpc-registry automated BioContainers addition for bakdrive bakdrive, httpx, isympy, cmark, pulptest, cbc, clp, glpsol, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py
GITHUB quay.io/biocontainers/bakrep-cli singularity registry hpc automated addition for bakrep-cli bakrep, idle3.13, pydoc3.13, python3.13, python3.13-config, normalizer
GITHUB quay.io/biocontainers/bakta shpc-registry automated BioContainers addition for bakta EukHighConfidenceFilter, amr_report, amrfinder, amrfinder_update, bakta, bakta_db, bakta_proteins, covels-SE, coves-SE, dna_mutation, eufindtRNA, fasta2gsi, fasta2parts, fasta_check, fasta_extract, gff_check, pilercr, sstofa, tRNAscan-SE, tRNAscan-SE.conf, trnascan-1.4, aragorn, igzip, pbunzip2, pbzcat, pbzip2, cmalign, cmbuild, cmcalibrate, cmconvert, cmemit
GITHUB quay.io/biocontainers/bali-phy shpc-registry automated BioContainers addition for bali-phy alignment-cat, alignment-chop-internal, alignment-compare, alignment-consensus, alignment-convert, alignment-distances, alignment-draw, alignment-find, alignment-find-conserved, alignment-gild, alignment-identity, alignment-indices, alignment-info, alignment-max, alignment-smc, alignment-thin, alignment-translate, alignments-diff, bali-phy, bali-phy-pkg, bali-subsample, bp-analyze, cut-range, draw-graph, draw-tree, extract-ancestors, joint-indels, joint-parsimony, mctree-mean-lengths, model_P, partitions-supported, path-graph, pickout, statreport, stats-cat, stats-merge, stats-select, summarize-ancestors, tree-mean-lengths, tree-partitions, tree-reroot, tree-tool, trees-bootstrap, trees-consensus, trees-distances, trees-pair-distances, trees-to-SRQ, chrpath, gnuplot, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config
GITHUB quay.io/biocontainers/balrog shpc-registry automated BioContainers addition for balrog balrog, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/baltic shpc-registry automated BioContainers addition for baltic f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc
GITHUB quay.io/biocontainers/bam-readcount shpc-registry automated BioContainers addition for bam-readcount bam-readcount, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, perl5.26.2, podselect
GITHUB quay.io/biocontainers/bam2fasta shpc-registry automated BioContainers addition for bam2fasta bam2fasta, pathos_connect, portpicker, pox, ppserver, screed, get_objgraph, undill, tqdm, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/bam2fastx shpc-registry automated BioContainers addition for bam2fastx bam2fasta, bam2fastq, bam2sam, ccs-kinetics-bystrandify, pbbamify, pbindex, pbindexdump, pbmerge, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/bam2plot singularity registry hpc automated addition for bam2plot bam2plot, checksum-profile, elastishadow, mosdepth, protoc-28.2.0, pyfastx, minimap2.py, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, annot-tsv, elasticurl, elasticurl_cpp, elastipubsub, numpy-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, gflags_completions.sh
GITHUB quay.io/biocontainers/bamaddrg shpc-registry automated BioContainers addition for bamaddrg bamaddrg
GITHUB quay.io/biocontainers/bamaligncleaner shpc-registry automated BioContainers addition for bamaligncleaner bamAlignCleaner, tqdm, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/bambamc shpc-registry automated BioContainers addition for bambamc
GITHUB quay.io/biocontainers/bamclipper shpc-registry automated BioContainers addition for bamclipper bamclipper.sh, clipprimer.pl, injectseparator.pl, parsort, perl5.32.0, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh
GITHUB quay.io/biocontainers/bamcmp shpc-registry automated BioContainers addition for bamcmp bamcmp, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/bamdash singularity registry hpc automated addition for bamdash bamdash, kaleido, mathjax-path, certutil, nspr-config, nss-config, pk12util, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bamhash shpc-registry automated BioContainers addition for bamhash bamhash_checksum_bam, bamhash_checksum_fasta, bamhash_checksum_fastq
GITHUB quay.io/biocontainers/bamkit shpc-registry automated BioContainers addition for bamkit bamcleanheader.py, bamfilterrg.py, bamgroupreads.py, bamheadrg.py, bamlibs.py, bamtofastq.py, sectosupp, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/bamm shpc-registry automated BioContainers addition for bamm bamFlags, bamm, perl5.32.0, qualfa2fq.pl, xa2multi.pl, bwa, f2py2, f2py2.7, fasta-sanitize.pl, plot-ampliconstats, python2-config, python2.7-config
GITHUB quay.io/biocontainers/bamr shpc-registry automated BioContainers addition for bamr 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/bamread shpc-registry automated BioContainers addition for bamread bamread, natsort, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7
GITHUB quay.io/biocontainers/bamscale shpc-registry automated BioContainers addition for bamscale BAMscale, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/bamsnap shpc-registry automated BioContainers addition for bamsnap bamsnap, faidx, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, jpgicc
GITHUB quay.io/biocontainers/bamstats singularity registry hpc automated addition for bamstats bamstats
GITHUB quay.io/biocontainers/bamsurgeon singularity registry hpc automated addition for bamsurgeon addindel.py, addsnv.py, addsv.py, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, esd2esi, exonerate, exonerate-server, fasta2esd, fastaannotatecdna, fastachecksum, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasubseq, fastatranslate, fastavalidcds, ipcress
GITHUB quay.io/biocontainers/bamtocov shpc-registry automated BioContainers addition for bamtocov average-coverage.py, bamcountrefs, bamtarget, bamtocounts, bamtocov, comparecounts.py, covToWig.py, covtotarget, feat-counts.py, gff2bed.py, low-cov-multisample.py, make-target-from-bam.py, prokka-annotation-refupdate.py, strip-seq-from-bam.py, gff2bed, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/bamtools shpc-registry automated BioContainers addition for bamtools bamtools
GITHUB quay.io/biocontainers/bamutil shpc-registry automated BioContainers addition for bamutil bam
GITHUB quay.io/biocontainers/bandage shpc-registry automated BioContainers addition for bandage
GITHUB quay.io/biocontainers/banner shpc-registry automated BioContainers addition for banner banner, conv-template, from-template, py.test, pytest, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m
GITHUB quay.io/biocontainers/barcode_splitter shpc-registry automated BioContainers addition for barcode_splitter barcode_splitter, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/baredsc shpc-registry automated BioContainers addition for baredsc baredSC_1d, baredSC_2d, combineMultipleModels_1d, combineMultipleModels_2d, nc3tonc4, nc4tonc3, ncinfo, zipcmp, zipmerge, ziptool, natsort, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8
GITHUB quay.io/biocontainers/barriers shpc-registry automated BioContainers addition for barriers barriers, crossrates.pl, fix_bar.pl, genPoHoLandscape, saddle.pl, saddle2dot.pl, saddle2gml.pl, treeplot.pl, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold
GITHUB quay.io/biocontainers/barrnap-python shpc-registry automated BioContainers addition for barrnap-python barrnap.py, barrnap, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct
GITHUB quay.io/biocontainers/barrnap shpc-registry automated BioContainers addition for barrnap barrnap, perl5.32.0, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev
GITHUB quay.io/biocontainers/barseqcount singularity registry hpc automated addition for barseqcount barseqcount, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc
GITHUB quay.io/biocontainers/bart singularity registry hpc automated addition for bart bart, bart-profile, bart-update, kma, kma_index, kma_shm, kma_update, refseq_masher, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/basenji shpc-registry automated BioContainers addition for basenji akita_data.py, akita_data_read.py, akita_data_write.py, akita_predict.py, akita_sat_plot.py, akita_sat_vcf.py, akita_scd.py, akita_scd_multi.py, akita_test.py, akita_train.py, bam_cov.py, basenji_annot_chr.py, basenji_bench_classify.py, basenji_bench_gtex.py, basenji_bench_gtex_cmp.py, basenji_bench_phylop.py, basenji_bench_phylop_folds.py, basenji_cmp.py, basenji_data.py, basenji_data2.py, basenji_data_align.py, basenji_data_gene.py, basenji_data_hic_read.py, basenji_data_hic_write.py, basenji_data_read.py, basenji_data_write.py, basenji_fetch_app.py, basenji_fetch_app1.py, basenji_fetch_app2.py, basenji_fetch_norm.py, basenji_fetch_vcf.py, basenji_gtex_folds.py, basenji_hdf5_genes.py, basenji_hidden.py, basenji_map.py, basenji_map_genes.py, basenji_map_seqs.py, basenji_motifs.py, basenji_motifs_denovo.py, basenji_norm_h5.py, basenji_predict.py, basenji_predict_bed.py, basenji_predict_bed_multi.py, basenji_sad.py, basenji_sad_multi.py, basenji_sad_norm.py, basenji_sad_ref.py, basenji_sad_ref_multi.py, basenji_sad_table.py, basenji_sat_bed.py, basenji_sat_bed_multi.py, basenji_sat_folds.py, basenji_sat_plot.py, basenji_sat_plot2.py, basenji_sat_vcf.py, basenji_sed.py, basenji_sed_multi.py, basenji_sedg.py, basenji_test.py, basenji_test_folds.py, basenji_test_genes.py, basenji_test_reps.py, basenji_test_specificity.py, basenji_train.py, basenji_train1.py, basenji_train2.py, basenji_train_folds.py, basenji_train_hic.py, basenji_train_reps.py, cooltools, fits2bitmap, fitscheck, fitsdiff, fitsheader, fitsinfo, import_pb_to_tensorboard, samp_hub, save_model.py, showtable, sonnet_predict_bed.py, sonnet_sad.py, sonnet_sad_multi.py, sonnet_sat_bed.py, sonnet_sat_vcf.py, tfr_bw.py, tfr_hdf5.py, tfr_qc.py, upgrade_tf1.py, volint, wcslint, cooler, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix
GITHUB quay.io/biocontainers/basic shpc-registry automated BioContainers addition for basic BASIC.py, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, perl5.26.2
GITHUB quay.io/biocontainers/batch_brb shpc-registry automated BioContainers addition for batch_brb accession_retrieve, adb01_check_db.py, adb02_add_alias_to_db.py, aliasdb_pipeline, alncut, alnpi, ar01_accret.py, bash, bashbug, batch_brb_functions.py, batch_brb_setup, batch_makeblastdb, del01_delete_db_entries.py, delete_db, fascodon, fascomp, fasconvert, fascut, fasfilter, fasgrep, fashead, faslen, faspaste, fasrc, fassort, fassub, fastail, fastax, fastaxsort, fastr, fasttree_pipeline, fasuniq, faswc, fasxl, ft01_extract_accessions.py, gbfalncut, gbfcut, mdb01_makeblastdb.sh, mdb02_convert_headers.py, mdb03_add_to_db.py, merge_results, or01_filter_hits.py, or02_find_orthologs.py, orthology_pipeline, show, seqkit, FastTree-2.1.10.c, FastTreeMP, muscle, FastTree, fasttree, CA.pm, cacert.pem, index-themes, fetch-extras
GITHUB quay.io/biocontainers/bats shpc-registry automated BioContainers addition for bats bats
GITHUB quay.io/biocontainers/batvi shpc-registry automated BioContainers addition for batvi call_integrations.sh, cat_sorted_sam.sh, clean_run.sh, collate.sh, collate_from_file.sh, combine_hits.pl, commandline.sh, convert_to_fastq.sh, email.sh, extract_hbv_from_fasta.sh, extract_sam_xargs.sh, extract_unmapped_and_oneside.sh, extracthbv.sh, gen_paths.sh, get_blast_hits.sh, get_reads.pl, hbvblast.sh, join_sam.sh, manualcompile.sh, relabelunbugreads.sh, search_text.sh, sort_by_name.sh, unbug.pl, unbug.sh, unbug_xarg.sh, view_xargs.sh, build.sh, picard, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns
GITHUB quay.io/biocontainers/bax2bam shpc-registry automated BioContainers addition for bax2bam bam2sam, bax2bam, pbbamify, pbindex, pbindexdump, pbmerge, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff
GITHUB quay.io/biocontainers/bayesase shpc-registry automated BioContainers addition for bayesase bwa_split_sam_seonly_2output.py, calculate_priors_ase_count_tables.py, check_aln_design_file.py, check_comparate_design_file.py, check_lost_reads.py, check_sam_present.py, check_samcomp_lost_reads.py, combine_count_tables.py, merge_comparates_generate_bayesian_headers.py, merge_priors_to_comparate.py, nbmodel_stan2.py, sam_compare_w_feature.py, summarize_sam_compare_cnts_table_1cond.py, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin, c89, c99
GITHUB quay.io/biocontainers/bayescan shpc-registry automated BioContainers addition for bayescan bayescan2
GITHUB quay.io/biocontainers/bayescode singularity registry hpc automated addition for bayescode attr, balsam, calibs_coevol_to_mutsel.py, esdcompat, fasta_to_ali.py, fitness_to_selcoeff.py, getfattr, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, lprodump, lrelease-pro, lupdate-pro, meshdebug, mutselomega, nodemutsel, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, plot_tree.py, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, readmutselomega, readnodemutsel, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, traits_coevol_to_mutsel.py, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, xml2-config.bak, ete3, xkbcli, db_convert, cups-config, ippeveprinter, ipptool, db_archive, db_checkpoint, db_deadlock, db_dump, db_hotbackup, db_load
GITHUB quay.io/biocontainers/bayestyper shpc-registry automated BioContainers addition for bayestyper bayesTyper, bayesTyperTools
GITHUB quay.io/biocontainers/baypass singularity registry hpc automated addition for baypass g_baypass
GITHUB quay.io/biocontainers/bazam shpc-registry automated BioContainers addition for bazam bazam, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bbknn shpc-registry automated BioContainers addition for bbknn numba, pycc, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config
GITHUB quay.io/biocontainers/bbmap shpc-registry automated BioContainers addition for bbmap a_sample_mt.sh, addadapters.sh, addssu.sh, adjusthomopolymers.sh, alltoall.sh, analyzeaccession.sh, analyzegenes.sh, analyzesketchresults.sh, applyvariants.sh, bbcms.sh, bbcountunique.sh, bbduk.sh, bbest.sh, bbfakereads.sh, bbmap.sh, bbmapskimmer.sh, bbmask.sh, bbmerge-auto.sh, bbmerge.sh, bbnorm.sh, bbrealign.sh, bbrename.sh, bbsketch.sh, bbsplit.sh, bbsplitpairs.sh, bbstats.sh, bbversion.sh, bbwrap.sh, bloomfilter.sh, build_env_setup.sh, calcmem.sh, calctruequality.sh, callgenes.sh, callpeaks.sh, callvariants.sh, callvariants2.sh, clumpify.sh, commonkmers.sh, comparegff.sh, comparesketch.sh, comparessu.sh, comparevcf.sh, conda_build.sh, consect.sh, consensus.sh, countbarcodes.sh, countgc.sh, countsharedlines.sh, crossblock.sh, crosscontaminate.sh, cutgff.sh, cutprimers.sh, decontaminate.sh, dedupe.sh, dedupe2.sh, dedupebymapping.sh, demuxbyname.sh, diskbench.sh, estherfilter.sh, explodetree.sh, fetchproks.sh, filterassemblysummary.sh, filterbarcodes.sh, filterbycoverage.sh, filterbyname.sh, filterbysequence.sh, filterbytaxa.sh, filterbytile.sh, filterlines.sh, filterqc.sh, filtersam.sh, filtersilva.sh, filtersubs.sh, filtervcf.sh, fixgaps.sh, fungalrelease.sh, fuse.sh, gbff2gff.sh, getreads.sh, gi2ancestors.sh, gi2taxid.sh, gitable.sh, grademerge.sh, gradesam.sh, icecreamfinder.sh, icecreamgrader.sh, icecreammaker.sh, idmatrix.sh, idtree.sh, invertkey.sh, kapastats.sh, kcompress.sh, keepbestcopy.sh, khist.sh, kmercountexact.sh, kmercountmulti.sh, kmercoverage.sh, kmerfilterset.sh, kmerlimit.sh, kmerlimit2.sh, kmerposition.sh, kmutate.sh, lilypad.sh, loadreads.sh, loglog.sh, makechimeras.sh, makecontaminatedgenomes.sh, makepolymers.sh, mapPacBio.sh, matrixtocolumns.sh, mergeOTUs.sh, mergebarcodes.sh, mergepgm.sh, mergeribo.sh, mergesam.sh, mergesketch.sh, mergesorted.sh, msa.sh, mutate.sh, muxbyname.sh, partition.sh, phylip2fasta.sh, pileup.sh, plotflowcell.sh, plotgc.sh, postfilter.sh, printtime.sh, processfrag.sh, processhi-c.sh, processspeed.sh, randomgenome.sh, randomreads.sh, readlength.sh, readqc.sh, reducesilva.sh, reformat.sh, reformatpb.sh, removebadbarcodes.sh, removecatdogmousehuman.sh, removehuman.sh, removehuman2.sh, removemicrobes.sh, removesmartbell.sh, rename.sh, renameimg.sh, repair.sh, replaceheaders.sh, representative.sh, rqcfilter.sh, rqcfilter2.sh, runhmm.sh, samtoroc.sh, seal.sh, sendsketch.sh, shred.sh, shrinkaccession.sh, shuffle.sh, shuffle2.sh, sketch.sh, sketchblacklist.sh, sketchblacklist2.sh, sortbyname.sh, splitbytaxa.sh, splitnextera.sh, splitribo.sh, splitsam.sh, splitsam4way.sh, splitsam6way.sh, stats.sh, statswrapper.sh, streamsam.sh, subsketch.sh, summarizecontam.sh, summarizecoverage.sh, summarizecrossblock.sh, summarizemerge.sh, summarizequast.sh, summarizescafstats.sh, summarizeseal.sh, summarizesketch.sh, synthmda.sh, tadpipe.sh, tadpole.sh, tadwrapper.sh, taxonomy.sh, taxserver.sh, taxsize.sh, taxtree.sh, testfilesystem.sh, testformat.sh, testformat2.sh, tetramerfreq.sh, textfile.sh, translate6frames.sh, unicode2ascii.sh, unzip.sh, vcf2gff.sh, webcheck.sh
GITHUB quay.io/biocontainers/bbmapy singularity registry hpc automated addition for bbmapy bbmapy-ensure-java, bbmapy-test, generate-bbmapy-commands, markdown-it, idle3.13, pydoc3.13, python3.13, python3.13-config, pygmentize
GITHUB quay.io/biocontainers/bbmix singularity registry hpc automated addition for bbmix qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fonttools, pyftmerge, pyftsubset, ttx, tjbench, brotli, opj_compress, opj_decompress, opj_dump
GITHUB quay.io/biocontainers/bcalm shpc-registry automated BioContainers addition for bcalm bcalm, h5cc
GITHUB quay.io/biocontainers/bcbio-gff shpc-registry automated BioContainers addition for bcbio-gff aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py
GITHUB quay.io/biocontainers/bcbio-prioritize shpc-registry automated BioContainers addition for bcbio-prioritize bcbio-prioritize, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bcbio-rnaseq shpc-registry automated BioContainers addition for bcbio-rnaseq bcbio-rnaseq, pandoc-citeproc, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj
GITHUB quay.io/biocontainers/bcbio-variation-recall shpc-registry automated BioContainers addition for bcbio-variation-recall bcbio-variation-recall, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bcbio-variation shpc-registry automated BioContainers addition for bcbio-variation bcbio-variation, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bcbio_monitor shpc-registry automated BioContainers addition for bcbio_monitor bcbio_monitor, flask, cxpm, sxpm, acyclic, bcomps, ccomps, circo, dijkstra, dot, dot2gxl
GITHUB quay.io/biocontainers/bcbiogff shpc-registry automated BioContainers addition for bcbiogff f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/bcbreport shpc-registry automated BioContainers addition for bcbreport 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/bcdoc shpc-registry automated BioContainers addition for bcdoc easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, rst2html.py
GITHUB quay.io/biocontainers/bcftools-gtc2vcf-plugin shpc-registry automated BioContainers addition for bcftools-gtc2vcf-plugin guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl
GITHUB quay.io/biocontainers/bcftools-liftover-plugin singularity registry hpc automated addition for bcftools-liftover-plugin gff2gff.py, annot-tsv, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/bcftools-snvphyl-plugin shpc-registry automated BioContainers addition for bcftools-snvphyl-plugin guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/bcftools shpc-registry automated BioContainers addition for bcftools bcftools, bgzip, color-chrs.pl, gff2gff.py, guess-ploidy.py, htsfile, libdeflate-gunzip, libdeflate-gzip, plot-roh.py, plot-vcfstats, run-roh.pl, tabix, vcfutils.pl
GITHUB quay.io/biocontainers/bcgtree singularity registry hpc automated addition for bcgtree Gblocks, bash, bashbug, bcgTree.pl, concatenate_by_header.pl, extract_essential_genes.sh, mm-alignments.pl, plot_matrix.py, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, muscle, prodigal, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn, esl-seqrange
GITHUB quay.io/biocontainers/bcl2fastq-nextseq shpc-registry automated BioContainers addition for bcl2fastq-nextseq bcl_to_fastq, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc
GITHUB quay.io/biocontainers/bcool shpc-registry automated BioContainers addition for bcool bcalm, bcool, bgreat, btrim, ntcard, nthll, h5cc, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/bcov shpc-registry automated BioContainers addition for bcov bcov, glpsol
GITHUB quay.io/biocontainers/bctools shpc-registry automated BioContainers addition for bctools convert_bc_to_binary_RY.py, coords2clnt.py, datamash, extract_aln_ends.py, extract_bcs.py, merge_pcr_duplicates.py, remove_tail.py, rm_spurious_events.pl, rm_spurious_events.py, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, f2py3.6, guess-ploidy.py
GITHUB quay.io/biocontainers/bd2k-python-lib shpc-registry automated BioContainers addition for bd2k-python-lib 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/beacon2-import singularity registry hpc automated addition for beacon2-import beacon2-import, beacon2-search, bioblend-galaxy-tests, asadmin, bundle_image, cfadmin, cq, cwutil, cyvcf2, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier, instance_events, kill_instance, launch_instance, list_instances, lss3, mturk, pyami_sendmail, route53, s3put, sdbadmin, taskadmin, coloredlogs, humanfriendly, f2py3.6
GITHUB quay.io/biocontainers/beacon2-ri-tools singularity registry hpc automated addition for beacon2-ri-tools beacon, bff-validator, bff2html.pl, bff2json.pl, crc32, csv2xlsx, extract_vba, hypnotoad, mojo, morbo, perl-doc, pxf2bff, vcf2bff.pl, yamlpp5-events, yamlpp5-highlight, yamlpp5-load, yamlpp5-load-dump, yamlpp5-parse-emit, pg_amcheck, pg_verifybackup, pg_checksums, tzselect, zdump, zic, oid2name, pg_receivewal, pg_resetwal, pg_waldump, vacuumlo, clusterdb, createdb, createuser, dropdb, dropuser, ecpg, initdb, pg_archivecleanup, pg_basebackup, pg_controldata, pg_ctl, pg_dump, pg_dumpall, pg_isready
GITHUB quay.io/biocontainers/beagle-lib shpc-registry automated BioContainers addition for beagle-lib cups-config, ippeveprinter, ipptool, libtoolize, libtool, jfr, jaotc, aserver, jdeprscan, jhsdb
GITHUB quay.io/biocontainers/beagle shpc-registry automated BioContainers addition for beagle beagle, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/beamspy shpc-registry automated BioContainers addition for beamspy beamspy, pyside2-lupdate, pyside2-rcc, pyside2-uic, pyside_tool.py, shiboken2, shiboken_tool.py, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, qwebengine_convert_dict
GITHUB quay.io/biocontainers/beast shpc-registry automated BioContainers addition for beast beast, beauti, loganalyser, logcombiner, treeannotator, treestat, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/beast2 shpc-registry automated BioContainers addition for beast2 applauncher, beast, beauti, densitree, loganalyser, logcombiner, packagemanager, treeannotator, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/beav singularity registry hpc automated addition for beav MitoHighConfidenceFilter, TMalign, amr_report, amrfinder, amrfinder_index, amrfinder_update, antismash, bakta, bakta_db, bakta_plot, bakta_proteins, beav, beav_db, defense-finder, dna_mutation, download-antismash-databases, fasta2parts, fasta_check, fasta_extract, gff_check, hmmalign2, hmmbuild2, hmmcalibrate2, hmmconvert2, hmmemit2, hmmfetch2, hmmindex2, hmmpfam2, hmmsearch2, integron_finder, integron_merge, integron_split, less2scss, macsyconfig, macsydata, macsyfinder, macsymerge, macsyprofile, macsysplit, pilercr, pl2bat.pl, pyrodigal, pyscss, tbl2asn-test, xsltproc_lite, make_pscores.pl, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip, compute-prior-dist, compute-uniform-priors, create-priors, dreme, dreme_xml_to_html, dreme_xml_to_txt, dust, elm2meme, fasta-center, fasta-dinucleotide-shuffle, fasta-fetch, fasta-get-markov, fasta-grep, fasta-hamming-enrich
GITHUB quay.io/biocontainers/bed2gff singularity registry hpc automated addition for bed2gff bed2gff
GITHUB quay.io/biocontainers/bed2gtf singularity registry hpc automated addition for bed2gtf bed2gtf
GITHUB quay.io/biocontainers/bedgovcf singularity registry hpc automated addition for bedgovcf bedgovcf, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/bedops shpc-registry automated BioContainers addition for bedops bedops, bedops-float128, bedops-megarow, bedops-typical, switch-BEDOPS-binary-type, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical, bam2bed_sge, bam2bed_sge-float128
GITHUB quay.io/biocontainers/bedparse shpc-registry automated BioContainers addition for bedparse bedparse, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/bedtk shpc-registry automated BioContainers addition for bedtk bedtk
GITHUB quay.io/biocontainers/bedtools shpc-registry automated BioContainers addition for bedtools bedtools, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, closestBed, clusterBed
GITHUB quay.io/biocontainers/behst shpc-registry automated BioContainers addition for behst behst, behst-download-data, behst-download-data.sh, behst.orig, behst.py, chromRegionLength.r, dataframeSumAllValues.r, difference_from_first_TSS_script_mordor.r, difference_from_first_TSS_script_mordor_chrom_wide.r, download_behst_data.sh, gProfilerCall.r, gene_annotation_parser.py, gene_annotation_parser_load_pickled_files.py, hiC_parser.py, hiC_parser_load_pickle_file.py, list_of_files, plot_heatmaps.r, project.sh, project.sh.orig, pvaluesPlotGenerator.r, retrieveMinRowCol.r, script_all_heatmaps.sh, script_multi_project_run.sh, script_multi_project_run_WITHOUT_LOOP.sh, script_multi_project_run_input_parameters.sh, temp_test.sh, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, idn2, shiftBed
GITHUB quay.io/biocontainers/bel-resources shpc-registry automated BioContainers addition for bel-resources bel-resources, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/bellerophon shpc-registry automated BioContainers addition for bellerophon bellerophon, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/bellmans-gapc shpc-registry automated BioContainers addition for bellmans-gapc gapc
GITHUB quay.io/biocontainers/berokka shpc-registry automated BioContainers addition for berokka berokka, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml, basemlg, chi2, codeml, evolver, infinitesites
GITHUB quay.io/biocontainers/besst shpc-registry automated BioContainers addition for besst reads_to_ctg_map.py, runBESST, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/bftools shpc-registry automated BioContainers addition for bftools bf.sh, bfconvert, bioformats_package.jar, config.sh, domainlist, formatlist, ijview, mkfake, showinf, tiffcomment, xmlindent, xmlvalid, metadata_conda_debug.yaml, jpackage, cups-config, ippeveprinter, ipptool, build_env_setup.sh, conda_build.sh, jfr, aserver, jdeprscan
GITHUB quay.io/biocontainers/bgreat shpc-registry automated BioContainers addition for bgreat bgreat
GITHUB quay.io/biocontainers/bialign singularity registry hpc automated addition for bialign bialign.py, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, gif2rgb, gifbuild, gifclrmp, giffix, giftext, giftool
GITHUB quay.io/biocontainers/biasaway shpc-registry automated BioContainers addition for biasaway biasaway, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc, tificc
GITHUB quay.io/biocontainers/bibliospec shpc-registry automated BioContainers addition for bibliospec BlibBuild, BlibFilter, BlibSearch, BlibToMs2
GITHUB quay.io/biocontainers/bicseq2-norm shpc-registry automated BioContainers addition for bicseq2-norm BRS, NBICseq-norm.pl, PrepPois, PrepPoisGAM, combineFile, compRatio.R, filterCNV, normalize.R, normalizeGAM.R, plot_RC_vs_GC.R, purity.R, purityEM, random_split, refine.R, refineGAM.R, test.mgcv.installed.R, perl5.32.1, streamzip
GITHUB quay.io/biocontainers/bicseq2-seg shpc-registry automated BioContainers addition for bicseq2-seg BICseqMulSample.pl, BICseqOneSample.pl, BICseqTwoSample.pl, EstLambdaFct, MBICseq, NBICseq-seg.pl, bootstrap, combineFile, combineSegBoostrap.R, countRead, genotype, genotype.pl, plotProfile.R, report.R, reportOneSample.R, perl5.32.1, streamzip
GITHUB quay.io/biocontainers/bifrost shpc-registry automated BioContainers addition for bifrost Bifrost
GITHUB quay.io/biocontainers/bigscape singularity registry hpc automated addition for bigscape bigscape.py, matplotlib, FastTreeMP, FastTree, fasttree, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn, esl-seqrange, esl-seqstat, esl-sfetch, esl-shuffle, esl-ssdraw, esl-translate
GITHUB quay.io/biocontainers/bigsi shpc-registry automated BioContainers addition for bigsi bigsi, falcon-bench, falcon-print-routes, hug, humanfriendly, cygdb, cython, cythonize, db_archive, db_checkpoint, db_deadlock, db_dump, db_hotbackup, db_load
GITHUB quay.io/biocontainers/bigslice singularity registry hpc automated addition for bigslice bigslice, download_bigslice_hmmdb, vectorize_bgcs, protoc-25.3.0, numpy-config, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, protoc
GITHUB quay.io/biocontainers/bigtools singularity registry hpc automated addition for bigtools bedgraphtobigwig, bedtobigbed, bigbedinfo, bigbedtobed, bigtools, bigwigaverageoverbed, bigwiginfo, bigwigmerge, bigwigtobedgraph, bigwigvaluesoverbed
GITHUB quay.io/biocontainers/binchicken singularity registry hpc automated addition for binchicken binchicken, cmtime, eido, genl-ctrl-list, ib_acme, ibis, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, idiag-socket-details, jsondiff, jsonpatch, jsonpointer, mckey, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave, nl-link-ifindex2name, nl-link-list, nl-link-name2ifindex, nl-link-release, nl-link-set, nl-link-stats, nl-list-caches, nl-list-sockets, nl-monitor, nl-neigh-add, nl-neigh-delete, nl-neigh-list, nl-neightbl-list, nl-nh-list, nl-pktloc-lookup, nl-qdisc-add, nl-qdisc-delete, nl-qdisc-list, nl-route-add, nl-route-delete, nl-route-get, nl-route-list, nl-rule-list, nl-tctree-list, nl-util-addr, protoc-24.4.0, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, ucmatose, udaddy, udpong, io_demo, ucx_info, ucx_perftest, ucx_read_profile, mamba-package, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, conda2solv, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, bsdcat, bsdcpio, bsdtar, conda-env, cph, elasticurl, elasticurl_cpp
GITHUB quay.io/biocontainers/bindash shpc-registry automated BioContainers addition for bindash bindash
GITHUB quay.io/biocontainers/bindashtree singularity registry hpc automated addition for bindashtree bindashtree
GITHUB quay.io/biocontainers/binette singularity registry hpc automated addition for binette binette, checkm2, protoc-23.3.0, pyrodigal, pyfastx, import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, diamond, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, markdown_py, prodigal, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign
GITHUB quay.io/biocontainers/binlorry shpc-registry automated BioContainers addition for binlorry binlorry, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/binning_refiner singularity registry hpc automated addition for binning_refiner Binning_refiner, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/binny singularity registry hpc automated addition for binny binny, blastn_vdb, cmtime, cnitool, elastipubsub5, h5fuse.sh, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, io_demo, mantis, mckey, mksquashfs, mqtt5_app, mqtt5_canary, mqtt5canary, nltk, produce_x_platform_fuzz_corpus, protoc-23.3.0, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, run-singularity, run_x_platform_fuzz_corpus, scalar, scmp_sys_resolver, singularity, tblastn_vdb, ucmatose, ucx_info, ucx_perftest, ucx_read_profile, udaddy, udpong, unsquashfs, elasticurl, elasticurl_cpp, elastipubsub, markdown-it, bsdcat, bsdcpio, bsdtar, csv-import, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, orc-memory, orc-scan, seqkit, timezone-dump, h5delete, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh
GITHUB quay.io/biocontainers/binsanity shpc-registry automated BioContainers addition for binsanity Binsanity, Binsanity-lc, Binsanity-profile, Binsanity-refine, Binsanity-wf, Binsanity2-beta, bin_evaluation, checkm, checkm_analysis, concat, detectionCall, exactSNP, featureCounts, flattenGTF, genRandomReads, get-ids, identifyHMM, propmapped, qualityScores, removeDup, repair, simplify-fasta, subindel, subjunc, sublong, subread-align, subread-buildindex, subread-fullscan, transform-coverage-profile, txUnique, rppr, guppy, pplacer, dendropy-format, sumlabels.py, sumtrees.py, prodigal, hmmpgmd_shard, easel, esl-mixdchlet
GITHUB quay.io/biocontainers/binspreader singularity registry hpc automated addition for binspreader bin-refine
GITHUB quay.io/biocontainers/bio-ting shpc-registry automated BioContainers addition for bio-ting imseq2ting, ting, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/bio-vcf singularity registry hpc automated addition for bio-vcf bio-vcf, bundle, bundler, gdbm_dump, gdbm_load, gdbmtool, erb, gem, irb, rake, rdoc, ri, ruby
GITHUB quay.io/biocontainers/bio_assembly_refinement shpc-registry automated BioContainers addition for bio_assembly_refinement contig_break_finder, contig_cleaner, contig_overlap_trimmer, pacbio_post_process, fastaq, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer
GITHUB quay.io/biocontainers/bio_hansel shpc-registry automated BioContainers addition for bio_hansel biohansel, hansel, cmark, pygmentize, futurize, pasteurize, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/bioawk shpc-registry automated BioContainers addition for bioawk bioawk
GITHUB quay.io/biocontainers/biobambam shpc-registry automated BioContainers addition for biobambam bam12auxmerge, bam12split, bam12strip, bamadapterclip, bamadapterfind, bamalignfrac, bamauxmerge, bamauxsort, bamcat, bamchecksort, bamclipreinsert, bamcollate, bamcollate2, bamdownsamplerandom, bamexplode, bamfillquery, bamfilteraux, bamfilterflags, bamfilterheader, bamfilterheader2, bamfilterlength, bamfiltermc, bamfilternames, bamfilterrefid, bamfilterrg, bamfixmateinformation, bamflagsplit, bamheap2, bamindex, bamintervalcomment, bamintervalcommenthist, bamlastfilter, bammapdist, bammarkduplicates, bammarkduplicates2, bammarkduplicatesopt, bammaskflags, bammdnm, bammerge, bamnumericalindex, bamrank, bamranksort, bamrecalculatecigar, bamrecompress, bamrefinterval, bamreset, bamscrapcount, bamseqchksum, bamsormadup, bamsort, bamsplit, bamsplitdiv, bamstreamingmarkduplicates, bamtagconversion, bamtofastq, bamvalidate, bamzztoname
GITHUB quay.io/biocontainers/biobasehttptools shpc-registry automated BioContainers addition for biobasehttptools AccessionToTaxId, AccessionToTaxId-bin, FetchSequence, FetchSequence-bin, GeneIdToGOTerms, GeneIdToGOTerms-bin, GeneIdToUniProtId, GeneIdToUniProtId-bin
GITHUB quay.io/biocontainers/biobb_adapters shpc-registry automated BioContainers addition for biobb_adapters bagit.py, black, black-primer, blackd, jupyter-console, jupyter-dejavu, jupyter-qtconsole, prov-compare, prov-convert, send2trash, cwltool, schema-salad-doc, schema-salad-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, jupyter-bundlerextension, jupyter-nbextension
GITHUB quay.io/biocontainers/biobb_amber shpc-registry automated BioContainers addition for biobb_amber AddToBox, CartHess2FC.py, ChBox, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, MMPBSA.py.MPI, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, amber_to_pdb, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, bar_pbsa.py, bondtype, bondtype.orig, car_to_files.py, ceinutil.py, cestats, cestats_run, charmmlipid2amber.py, cpeinutil.py, cphstats, cphstats_run, cpinutil.py, cpptraj, cpptraj_randomize_ions, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gwh, hcp_getpdb, leap_add_ions, leap_build_linear_structure, leap_gen_top, leap_solvate, makeANG_RST, makeCHIR_RST, makeCSA_RST.na, makeDIP_RST.protein, makeDIST_RST, makeRIGID_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nab_build_dna_structure, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, parmed_cpinutil, parmed_hmassrepartition, pbsa, pdb4amber, pdb4amber_run, pmemd_mdrun, prepgen, process_mdout, process_mdout.perl, process_minout, process_minout.perl, py_resp.py, pymdpbsa, pytleap, reduce, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, sander_mdrun, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tinker_to_amber, tleap, ucpp, xaLeap, xleap, xparmed, cygdb, cython, cythonize, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc
GITHUB quay.io/biocontainers/biobb_analysis shpc-registry automated BioContainers addition for biobb_analysis AddToBox, CartHess2FC.py, ChBox, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, MMPBSA.py.MPI, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, bar_pbsa.py, bondtype, bondtype.orig, car_to_files.py, ceinutil.py, cestats, charmmlipid2amber.py, cpeinutil.py, cphstats, cpinutil.py, cpptraj, cpptraj_average, cpptraj_bfactor, cpptraj_convert, cpptraj_dry, cpptraj_image, cpptraj_mask, cpptraj_rgyr, cpptraj_rms, cpptraj_rmsf, cpptraj_slice, cpptraj_snapshot, cpptraj_strip, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gmx, gmx_cluster, gmx_energy, gmx_image, gmx_rgyr, gmx_rms, gmx_trjconv_str, gmx_trjconv_str_ens, gmx_trjconv_trj, gwh, hcp_getpdb, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, makeANG_RST, makeCHIR_RST, makeCSA_RST.na, makeDIP_RST.protein, makeDIST_RST, makeRIGID_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, pbsa, pdb4amber, prepgen, process_mdout.perl, process_minout.perl, py_resp.py, pymdpbsa, pytleap, reduce, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tinker_to_amber, tleap, ucpp, xaLeap, xleap, xparmed, cygdb, cython, cythonize, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc
GITHUB quay.io/biocontainers/biobb_chemistry shpc-registry automated BioContainers addition for biobb_chemistry AddToBox, CartHess2FC.py, ChBox, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, MMPBSA.py.MPI, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, acpype, acpype_params_ac, acpype_params_cns, acpype_params_gmx, acpype_params_gmx_opls, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, babel_add_hydrogens, babel_convert, babel_minimize, babel_remove_hydrogens, bar_pbsa.py, bondtype, bondtype.orig, car_to_files.py, ceinutil.py, cestats, charmmlipid2amber.py, cpeinutil.py, cphstats, cpinutil.py, cpptraj, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gwh, hcp_getpdb, makeANG_RST, makeCHIR_RST, makeCSA_RST.na, makeDIP_RST.protein, makeDIST_RST, makeRIGID_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, obfitall, obmm, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, pbsa, pdb4amber, prepgen, process_mdout.perl, process_minout.perl, py_resp.py, pymdpbsa, pytleap, reduce, reduce_add_hydrogens, reduce_remove_hydrogens, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tinker_to_amber, tleap, ucpp, xaLeap, xleap, xparmed, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop
GITHUB quay.io/biocontainers/biobb_cmip shpc-registry automated BioContainers addition for biobb_cmip avgEpsGrid, canal, check_structure, cmip, getPatch, grd2cube, gsd, mrcfile-header, mrcfile-validate, nc3tonc4, nc4tonc3, ncinfo, prepare_structure, surfnet2binaryGrid, titration, watden, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/biobb_common shpc-registry automated BioContainers addition for biobb_common normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/biobb_cp2k singularity registry hpc automated addition for biobb_cp2k cp2k.sopt, cp2k.ssmp, cp2k_prep, cp2k_run, cp2k_shell.ssmp, libxsmm_gemm_generator, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, normalizer, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/biobb_dna shpc-registry automated BioContainers addition for biobb_dna AddToBox, Canal, Canion, CartHess2FC.py, ChBox, Cur+, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, average_stiffness, basepair_stiffness, biobb_canal, biobb_canion, biobb_curves, bipopulations, bondtype, bondtype.orig, canonicalag, car_to_files.py, ceinutil.py, cestats, charmmlipid2amber.py, cpeinutil.py, cphstats, cpinutil.py, cpptraj, dna_averages, dna_bimodality, dna_timeseries, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gwh, hcp_getpdb, interbpcorr, interhpcorr, interseqcorr, intrabpcorr, intrahpcorr, intraseqcorr, makeANG_RST, makeDIST_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, pbsa, pdb4amber, prepgen, process_mdout.perl, process_minout.perl, puckering, pymdpbsa, pytleap, reduce, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tleap, ucpp, xaLeap, xleap, xparmed, cygdb, cython, cythonize, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/biobb_flexdyn singularity registry hpc automated addition for biobb_flexdyn NOLB, concoord_disco, concoord_dist, dist, dist.exe, evol, imc, imod_imode, imod_imove, imode_gcc, imodview, imove, nolb_nma, prody, prody_anm, disco, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc, transicc
GITHUB quay.io/biocontainers/biobb_flexserv singularity registry hpc automated addition for biobb_flexserv bd, bd_run, bison, diaghess, dmd_run, dmdgoopt, flex, flex++, genpcz, lorellnma, m4, mc-eigen-mdweb.pl, mc-eigen.pl, nma_run, nmanu.pl, pca_anim_mc.pl, pcaunzip, pcazip, pcz_animate, pcz_bfactor, pcz_collectivity, pcz_evecs, pcz_hinges, pcz_info, pcz_lindemann, pcz_similarity, pcz_stiffness, pcz_unzip, pcz_zip, pczdump, yacc, aec, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff, hdp, hrepack, jpeg2hdf
GITHUB quay.io/biocontainers/biobb_godmd singularity registry hpc automated addition for biobb_godmd discrete, godmd_prep, godmd_run, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/biobb_gromacs singularity registry hpc automated addition for biobb_gromacs append_ligand, editconf, genion, genrestr, gmx, gmxselect, grompp, grompp_mdrun, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, make_ndx, mdrun, ndx2resttop, pdb2gmx, solvate, trjcat, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, normalizer, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/biobb_haddock singularity registry hpc automated addition for biobb_haddock capri_eval, clust_fcc, em_ref, flex_ref, rigid_body, sele_top, topology, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, normalizer
GITHUB quay.io/biocontainers/biobb_io shpc-registry automated BioContainers addition for biobb_io alphafold, api_binding_site, canonical_fasta, drugbank, ideal_sdf, ligand, memprotmd_sim, memprotmd_sim_list, memprotmd_sim_search, mmcif, pdb, pdb_cluster_zip, pdb_variants, structure_info, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/biobb_md shpc-registry automated BioContainers addition for biobb_md GMXRC, GMXRC.bash, GMXRC.csh, GMXRC.zsh, append_ligand, demux.pl, editconf, genion, genrestr, gmx, gmx-completion-gmx.bash, gmx-completion.bash, gmxselect, grompp, grompp_mdrun, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, make_ndx, mdrun, ndx2resttop, pdb2gmx, solvate, xplor2gmx.pl, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, normalizer, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7
GITHUB quay.io/biocontainers/biobb_mem singularity registry hpc automated addition for biobb_mem AddToBox, CartHess2FC.py, ChBox, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, MMPBSA.py.MPI, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, ambmask, ambpdb, android_deploy.py, androiddeployqt6, ante-MMPBSA.py, antechamber, assistant6, atomtype, bar_pbsa.py, bln2gnu, bondtype, capost2gnu, car_to_files.py, ceinutil.py, cestats, charmmlipid2amber.py, cllayerinfo, cpeinutil.py, cphstats, cpinutil.py, cpptraj, cpptraj_density, deploy.py, designer6, draw_membrane2, edgembar, edgembar-WriteGraphHtml.py, edgembar-amber2dats.py, elsize, espgen, espgen.py, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gmx, grd2gnu, gsd, gwh, hcp_getpdb, hole, immers, labqpt, ldapadd, ldapcompare, ldapdelete, ldapexop, ldapmodify, ldapmodrdn, ldappasswd, ldapsearch, ldapurl, ldapvc, ldapwhoami, linguist6, lpp_assign_leaflets, makeANG_RST, makeCHIR_RST, makeCSA_RST.na, makeDIP_RST.protein, makeDIST_RST, makeRIGID_RST, make_crd_hg, make_post2gnu, make_post_map, mda_hole, mdgx, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metaobjectdump.py, metatwist, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, mrcfile-header, mrcfile-validate, ndfes, ndfes-AvgFESs.py, ndfes-CheckEquil.py, ndfes-CombineMetafiles.py, ndfes-FTSM-PrepareAnalysis.py, ndfes-FTSM-PrepareGuess.py, ndfes-FTSM-PrepareSims.py, ndfes-PrepareAmberData.py, ndfes-PrintFES.py, ndfes-PrintStringFES.py, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, pbsa, pdb4amber, pixeltool6, prepgen, process_mdout.perl, process_minout.perl, project.py, py_resp.py, pyresp_gen.py, pyside6-rcc, pyside6-uic, qdbus6, qdbusviewer6, qdistancefieldgenerator6, qdoc6, qmake6, qml.py, qml6, qmleasing6, qmlls6, qmlpreview6, qmlscene6, qplot, qpt_conv, qt6.conf, qtdiag6, qtplugininfo6, qtpy2cpp.py, quick, reduce, requirements-android.txt, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, shiboken6, shiboken_tool.py, simplepbsa, softcore_setup.py, sos_triangle, sph_process, sqm, sviol, sviol2, teLeap, test-api, tinker_to_amber, tleap, ucpp, vdwdot, vmd_triangles_to_lines, wayland-scanner, xaLeap, xleap, nc3tonc4, nc4tonc3, ncinfo, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, h5tools_test_utils, h5fuse.sh, cygdb, cython, cythonize, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch
GITHUB quay.io/biocontainers/biobb_ml shpc-registry automated BioContainers addition for biobb_ml agglomerative_clustering, agglomerative_coefficient, autoencoder_neural_network, classification_neural_network, classification_predict, clustering_predict, correlation_matrix, dbscan, decision_tree, dendrogram, drop_columns, dummy_variables, import_pb_to_tensorboard, k_means, k_means_coefficient, k_neighbors, k_neighbors_coefficient, linear_regression, logistic_regression, map_variables, neural_network_decode, neural_network_predict, oversampling, pairwise_comparison, pls_components, pls_regression, polynomial_regression, principal_component, random_forest_classifier, random_forest_regressor, recurrent_neural_network, regression_neural_network, regression_predict, resampling, scale_columns, spectral_clustering, spectral_coefficient, support_vector_machine, undersampling, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2
GITHUB quay.io/biocontainers/biobb_model shpc-registry automated BioContainers addition for biobb_model check_structure, checking_log, fix_amides, fix_backbone, fix_chirality, fix_side_chain, mutate, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/biobb_pdb_tools singularity registry hpc automated addition for biobb_pdb_tools biobb_pdb_chain, biobb_pdb_chainxseg, biobb_pdb_delhetatm, biobb_pdb_fetch, biobb_pdb_merge, biobb_pdb_mkensemble, biobb_pdb_reres, biobb_pdb_seg, biobb_pdb_splitmodel, biobb_pdb_splitseg, biobb_pdb_tidy, biobb_pdb_tofasta, pdb_b, pdb_chain, pdb_chainbows, pdb_chainxseg, pdb_chkensemble, pdb_delchain, pdb_delelem, pdb_delhetatm, pdb_delinsertion, pdb_delres, pdb_delresname, pdb_element, pdb_fetch, pdb_fixinsert, pdb_fromcif, pdb_gap, pdb_head, pdb_intersect, pdb_keepcoord, pdb_merge, pdb_mkensemble, pdb_occ, pdb_reatom, pdb_reres, pdb_rplchain, pdb_rplresname, pdb_seg, pdb_segxchain, pdb_selaltloc, pdb_selatom, pdb_selchain, pdb_selelem, pdb_selhetatm, pdb_selmodel, pdb_selres, pdb_selresname, pdb_selseg, pdb_shiftres, pdb_sort, pdb_splitchain, pdb_splitmodel, pdb_splitseg, pdb_tidy, pdb_tocif, pdb_tofasta, pdb_uniqname, pdb_validate, pdb_wc, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, normalizer
GITHUB quay.io/biocontainers/biobb_pmx shpc-registry automated BioContainers addition for biobb_pmx pmx, pmxanalyse, pmxatom_mapping, pmxcreate_top, pmxgentop, pmxligand_hybrid, pmxmerge_ff, pmxmutate, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, futurize, pasteurize, f2py3.7, opj_compress
GITHUB quay.io/biocontainers/biobb_pytorch singularity registry hpc automated addition for biobb_pytorch apply_mdae, protoc-25.1.0, torch_shm_manager, train_mdae, torchrun, isympy, convert-caffe2-to-onnx, convert-onnx-to-caffe2, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, protoc, normalizer
GITHUB quay.io/biocontainers/biobb_remote singularity registry hpc automated addition for biobb_remote credentials, scp_service, slurm_test, ssh_command, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/biobb_structure_checking shpc-registry automated BioContainers addition for biobb_structure_checking check_structure, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/biobb_structure_manager shpc-registry automated BioContainers addition for biobb_structure_manager f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/biobb_structure_utils shpc-registry automated BioContainers addition for biobb_structure_utils cat_pdb, check_structure, closest_residues, extract_atoms, extract_chain, extract_heteroatoms, extract_model, extract_molecule, extract_residues, remove_ligand, remove_molecules, remove_pdb_water, renumber_structure, sort_gro_residues, str_check_add_hydrogens, structure_check, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/biobb_vs shpc-registry automated BioContainers addition for biobb_vs autodock_vina_run, bindingsite, box, box_residues, dpocket, extract_model_pdbqt, fpocket, fpocket_filter, fpocket_run, fpocket_select, mdpocket, tpocket, vina, vina_split, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/biobb_wf_mutations shpc-registry automated BioContainers addition for biobb_wf_mutations GMXRC, GMXRC.bash, GMXRC.csh, GMXRC.zsh, bagit.py, demux.pl, editconf, fix_side_chain, genion, genrestr, gmx, gmx-completion-gmx.bash, gmx-completion.bash, grompp, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, jupyter-console, jupyter-qtconsole, lstopo, lstopo-no-graphics, make_ndx, mdrun, mutate, ndx2resttop, pdb, pdb2gmx, pdb_cluster_zip, pdb_variants, prov-compare, prov-convert, solvate, xplor2gmx.pl, cwltool, schema-salad-doc, schema-salad-tool, g-ir-doc-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, jupyter-bundlerextension
GITHUB quay.io/biocontainers/bioblend shpc-registry automated BioContainers addition for bioblend bioblend-galaxy-tests, x86_64-conda_cos7-linux-gnu-ld, normalizer, futurize, pasteurize, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/biobloomtools singularity registry hpc automated addition for biobloomtools biobloomcategorizer, biobloommaker, biobloommicategorizer, biobloommimaker
GITHUB quay.io/biocontainers/biobox_add_taxid singularity registry hpc automated addition for biobox_add_taxid biobox_add_taxid.py, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config
GITHUB quay.io/biocontainers/biocamlib singularity registry hpc automated addition for biocamlib FASTools, Octopus, Parallel, RC
GITHUB quay.io/biocontainers/biocantor singularity registry hpc automated addition for biocantor gffutils-cli, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/biocode singularity registry hpc automated addition for biocode add_gff3_locus_tags.py, add_polypeptide_to_gff3_gene_models.py, append_to_column_9_value.py, append_to_fasta_header.py, append_to_fastq_read_header.py, calculate_gene_coverage_from_assembly.py, calculate_query_coverage_by_blast.py, check_for_embedded_fasta_headers.py, check_gff_for_internal_stops.py, compare_gene_structures.py, convert_aat_btab_to_gff3.py, convert_augustus_to_gff3.py, convert_blast_btab_to_bed.py, convert_blast_btab_to_gff3.py, convert_cegma_gff_to_gff3.py, convert_cufflinks_gtf_to_gff3.py, convert_fasta_contigs_to_gff3.py, convert_fastq_to_fasta.py, convert_genbank_to_gff3.py, convert_gff3_to_bed.py, convert_gff3_to_gbk.py, convert_gff3_to_gene_association_format.py, convert_gff3_to_ncbi_tbl.py, convert_gff_to_ncbi_gff3.py, convert_glimmerHMM_gff_to_gff3.py, convert_htab_to_bed.py, convert_metagenemark_gff_to_gff3.py, convert_pasa_gff_to_models.py, convert_prodigal_to_gff3.py, convert_scipio_gff_to_gff3.py, correct_gff3_CDS_phase_column.py, create_rsem_html_table.py, create_taxonomic_profile_from_blast.py, create_taxonomy_db.py, detect_inverted_repeats.py, download_assemblies_from_genbank.py, eggnog_to_sqlite3.py, extend_genes_to_stops.py, extract_fasta_regions.py, fasta_base_content.py, fasta_simple_stats.py, fasta_size_distribution_plot.py, fastq_simple_stats.py, filter_fasta_by_abundance.py, filter_fasta_by_header_regex.py, filter_fasta_by_type.py, filter_fastq_by_N_content.py, filter_gff3_by_id_list.py, filter_uniref_by_repid.py, filter_uniref_by_taxonomy.py, get_mpilup_from_id_list.py, hmmlib_to_sqlite3.py, interleave_fastq.py, join_columnar_files.py, list_biocode.py, make_cufflinks_ids_unique.py, make_go_index.py, make_go_slim.py, make_go_slim_index.py, mark_partial_genes.py, merge_bam_files.py, merge_fasta_files_and_uniquify_ids.py, merge_masked_fasta_files.py, merge_predicted_gff3.py, prepend_to_fasta_header.py, pwiz.py, randomly_subsample_fastq.py, reformat_fasta_residue_lengths.py, remove_duplicate_features.py, remove_duplicate_sequences.py, remove_masked_gene_models.py, remove_orphaned_features.py, reorient_sequences_by_id.py, replace_gff_type_column_value.py, replace_homopolymeric_repeats_with_Ns.py, report_basic_gff_model_agreement.py, report_coverage_gaps.py, report_gff3_statistics.py, report_gff_intron_and_intergenic_stats.py, report_go_slim_counts.py, report_or_replace_nonstandard_residues.py, reverse_misordered_cds_coords.py, select_training_and_evaluation_transcripts.py, set_source_column.py, split_fasta_into_even_files.py, split_interleaved_sequence_file.py, split_isoforms_into_individual_genes.py, split_molecules_on_gaps.py, subsample_fasta.py, taxadb, tigrfam_info_to_sqlite3.py, uniprot_sprot_to_sqlite3.py, uniref_to_sqlite3.py, update_selected_column9_values.py, validate_fasta.py, validate_feature_boundaries_on_molecules.py, write_fasta_from_gff.py, igraph, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis, ndmetis, glpsol, fonttools, pyftmerge, pyftsubset, ttx, normalizer, tqdm, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/biocommons.seqrepo shpc-registry automated BioContainers addition for biocommons.seqrepo pyppeteer-install, seqrepo, sqlformat, yoyo, yoyo-migrate, coloredlogs, humanfriendly, tabulate, normalizer, tqdm, xslt-config, xsltproc, 2to3-3.9, idle3.9, pydoc3.9
GITHUB quay.io/biocontainers/bioconda-utils shpc-registry automated BioContainers addition for bioconda-utils anaconda, binstar, bioconda-utils, boa, bsdcat, bsdcpio, bsdtar, celery, conda-build, conda-convert, conda-debug, conda-develop, conda-index, conda-inspect, conda-mambabuild, conda-metapackage, conda-render, conda-server, conda-skeleton, conda-verify, conda2solv, dumpsolv, galaxy-tool-test, installcheck, involucro, mamba, mamba-package, mergesolv, mulled-build, mulled-build-channel, mulled-build-files, mulled-build-tool, mulled-search, patchelf, pkginfo, pyjson5, repo2solv, rg, scalar, skopeo, testsolv, watchgod, conda-env, cph, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, docutils
GITHUB quay.io/biocontainers/bioconda2biocontainer shpc-registry automated BioContainers addition for bioconda2biocontainer bioconda2biocontainer, bioconda2cwldocker, biocontainers-search, normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-a4 shpc-registry automated BioContainers addition for bioconductor-a4
GITHUB quay.io/biocontainers/bioconductor-a4base shpc-registry automated BioContainers addition for bioconductor-a4base
GITHUB quay.io/biocontainers/bioconductor-a4classif shpc-registry automated BioContainers addition for bioconductor-a4classif
GITHUB quay.io/biocontainers/bioconductor-a4core shpc-registry automated BioContainers addition for bioconductor-a4core
GITHUB quay.io/biocontainers/bioconductor-a4preproc shpc-registry automated BioContainers addition for bioconductor-a4preproc
GITHUB quay.io/biocontainers/bioconductor-a4reporting shpc-registry automated BioContainers addition for bioconductor-a4reporting
GITHUB quay.io/biocontainers/bioconductor-abadata shpc-registry automated BioContainers addition for bioconductor-abadata wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-abaenrichment shpc-registry automated BioContainers addition for bioconductor-abaenrichment wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-abarray shpc-registry automated BioContainers addition for bioconductor-abarray
GITHUB quay.io/biocontainers/bioconductor-abseqr shpc-registry automated BioContainers addition for bioconductor-abseqr pandoc, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-absseq shpc-registry automated BioContainers addition for bioconductor-absseq
GITHUB quay.io/biocontainers/bioconductor-acde shpc-registry automated BioContainers addition for bioconductor-acde tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-ace shpc-registry automated BioContainers addition for bioconductor-ace x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-acgh shpc-registry automated BioContainers addition for bioconductor-acgh
GITHUB quay.io/biocontainers/bioconductor-acme shpc-registry automated BioContainers addition for bioconductor-acme
GITHUB quay.io/biocontainers/bioconductor-adacgh2 shpc-registry automated BioContainers addition for bioconductor-adacgh2
GITHUB quay.io/biocontainers/bioconductor-adam shpc-registry automated BioContainers addition for bioconductor-adam x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-adamgui shpc-registry automated BioContainers addition for bioconductor-adamgui x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-adaptest shpc-registry automated BioContainers addition for bioconductor-adaptest 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-adductdata shpc-registry automated BioContainers addition for bioconductor-adductdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-adductomicsr shpc-registry automated BioContainers addition for bioconductor-adductomicsr zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-adimpute shpc-registry automated BioContainers addition for bioconductor-adimpute
GITHUB quay.io/biocontainers/bioconductor-adme16cod.db shpc-registry automated BioContainers addition for bioconductor-adme16cod.db
GITHUB quay.io/biocontainers/bioconductor-adsplit shpc-registry automated BioContainers addition for bioconductor-adsplit
GITHUB quay.io/biocontainers/bioconductor-adverscarial singularity registry hpc automated addition for bioconductor-adverscarial pcre2posix_test, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-affixcan shpc-registry automated BioContainers addition for bioconductor-affixcan x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-affxparser shpc-registry automated BioContainers addition for bioconductor-affxparser
GITHUB quay.io/biocontainers/bioconductor-affy shpc-registry automated BioContainers addition for bioconductor-affy
GITHUB quay.io/biocontainers/bioconductor-affycomp shpc-registry automated BioContainers addition for bioconductor-affycomp
GITHUB quay.io/biocontainers/bioconductor-affycompatible shpc-registry automated BioContainers addition for bioconductor-affycompatible
GITHUB quay.io/biocontainers/bioconductor-affycompdata shpc-registry automated BioContainers addition for bioconductor-affycompdata
GITHUB quay.io/biocontainers/bioconductor-affycontam shpc-registry automated BioContainers addition for bioconductor-affycontam
GITHUB quay.io/biocontainers/bioconductor-affycoretools shpc-registry automated BioContainers addition for bioconductor-affycoretools
GITHUB quay.io/biocontainers/bioconductor-affydata shpc-registry automated BioContainers addition for bioconductor-affydata
GITHUB quay.io/biocontainers/bioconductor-affyexpress shpc-registry automated BioContainers addition for bioconductor-affyexpress x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-affyhgu133a2expr shpc-registry automated BioContainers addition for bioconductor-affyhgu133a2expr
GITHUB quay.io/biocontainers/bioconductor-affyhgu133aexpr shpc-registry automated BioContainers addition for bioconductor-affyhgu133aexpr
GITHUB quay.io/biocontainers/bioconductor-affyhgu133plus2expr shpc-registry automated BioContainers addition for bioconductor-affyhgu133plus2expr
GITHUB quay.io/biocontainers/bioconductor-affyilm shpc-registry automated BioContainers addition for bioconductor-affyilm
GITHUB quay.io/biocontainers/bioconductor-affyio shpc-registry automated BioContainers addition for bioconductor-affyio
GITHUB quay.io/biocontainers/bioconductor-affylmgui shpc-registry automated BioContainers addition for bioconductor-affylmgui
GITHUB quay.io/biocontainers/bioconductor-affymetrixdatatestfiles shpc-registry automated BioContainers addition for bioconductor-affymetrixdatatestfiles
GITHUB quay.io/biocontainers/bioconductor-affymoe4302expr shpc-registry automated BioContainers addition for bioconductor-affymoe4302expr
GITHUB quay.io/biocontainers/bioconductor-affypara shpc-registry automated BioContainers addition for bioconductor-affypara x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-affypdnn shpc-registry automated BioContainers addition for bioconductor-affypdnn gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-affyplm shpc-registry automated BioContainers addition for bioconductor-affyplm
GITHUB quay.io/biocontainers/bioconductor-affyqcreport shpc-registry automated BioContainers addition for bioconductor-affyqcreport x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-affyrnadegradation shpc-registry automated BioContainers addition for bioconductor-affyrnadegradation
GITHUB quay.io/biocontainers/bioconductor-ag.db shpc-registry automated BioContainers addition for bioconductor-ag.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-agcdf shpc-registry automated BioContainers addition for bioconductor-agcdf
GITHUB quay.io/biocontainers/bioconductor-agdex shpc-registry automated BioContainers addition for bioconductor-agdex
GITHUB quay.io/biocontainers/bioconductor-aggregatebiovar shpc-registry automated BioContainers addition for bioconductor-aggregatebiovar
GITHUB quay.io/biocontainers/bioconductor-agilp shpc-registry automated BioContainers addition for bioconductor-agilp tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-agimicrorna shpc-registry automated BioContainers addition for bioconductor-agimicrorna
GITHUB quay.io/biocontainers/bioconductor-agprobe shpc-registry automated BioContainers addition for bioconductor-agprobe
GITHUB quay.io/biocontainers/bioconductor-ahcytobands shpc-registry automated BioContainers addition for bioconductor-ahcytobands
GITHUB quay.io/biocontainers/bioconductor-ahensdbs shpc-registry automated BioContainers addition for bioconductor-ahensdbs
GITHUB quay.io/biocontainers/bioconductor-ahlrbasedbs shpc-registry automated BioContainers addition for bioconductor-ahlrbasedbs
GITHUB quay.io/biocontainers/bioconductor-ahmassbank singularity registry hpc automated addition for bioconductor-ahmassbank hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1
GITHUB quay.io/biocontainers/bioconductor-ahmeshdbs shpc-registry automated BioContainers addition for bioconductor-ahmeshdbs
GITHUB quay.io/biocontainers/bioconductor-ahpathbankdbs shpc-registry automated BioContainers addition for bioconductor-ahpathbankdbs
GITHUB quay.io/biocontainers/bioconductor-ahpubmeddbs shpc-registry automated BioContainers addition for bioconductor-ahpubmeddbs
GITHUB quay.io/biocontainers/bioconductor-ahwikipathwaysdbs shpc-registry automated BioContainers addition for bioconductor-ahwikipathwaysdbs
GITHUB quay.io/biocontainers/bioconductor-aims shpc-registry automated BioContainers addition for bioconductor-aims bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-airpart shpc-registry automated BioContainers addition for bioconductor-airpart
GITHUB quay.io/biocontainers/bioconductor-airway shpc-registry automated BioContainers addition for bioconductor-airway 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-alabaster.base singularity registry hpc automated addition for bioconductor-alabaster.base hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-alabaster.bumpy singularity registry hpc automated addition for bioconductor-alabaster.bumpy hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-alabaster.files singularity registry hpc automated addition for bioconductor-alabaster.files pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete
GITHUB quay.io/biocontainers/bioconductor-alabaster.mae singularity registry hpc automated addition for bioconductor-alabaster.mae hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-alabaster.matrix singularity registry hpc automated addition for bioconductor-alabaster.matrix hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-alabaster.ranges singularity registry hpc automated addition for bioconductor-alabaster.ranges hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-alabaster.sce singularity registry hpc automated addition for bioconductor-alabaster.sce hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-alabaster.schemas singularity registry hpc automated addition for bioconductor-alabaster.schemas hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-alabaster.se singularity registry hpc automated addition for bioconductor-alabaster.se hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-alabaster.spatial singularity registry hpc automated addition for bioconductor-alabaster.spatial x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, hb-info, dvipdf, eps2eps, gs, gsbj, gsdj
GITHUB quay.io/biocontainers/bioconductor-alabaster.string singularity registry hpc automated addition for bioconductor-alabaster.string hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-alabaster.vcf singularity registry hpc automated addition for bioconductor-alabaster.vcf hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-aldex2 shpc-registry automated BioContainers addition for bioconductor-aldex2 bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-alevinqc shpc-registry automated BioContainers addition for bioconductor-alevinqc pandoc, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-all shpc-registry automated BioContainers addition for bioconductor-all
GITHUB quay.io/biocontainers/bioconductor-allelicimbalance shpc-registry automated BioContainers addition for bioconductor-allelicimbalance
GITHUB quay.io/biocontainers/bioconductor-allenpvc shpc-registry automated BioContainers addition for bioconductor-allenpvc gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-allmll shpc-registry automated BioContainers addition for bioconductor-allmll
GITHUB quay.io/biocontainers/bioconductor-alphabeta shpc-registry automated BioContainers addition for bioconductor-alphabeta
GITHUB quay.io/biocontainers/bioconductor-alphamissense.v2023.hg19 singularity registry hpc automated addition for bioconductor-alphamissense.v2023.hg19 pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-alphamissense.v2023.hg38 singularity registry hpc automated addition for bioconductor-alphamissense.v2023.hg38 pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-alphamissenser singularity registry hpc automated addition for bioconductor-alphamissenser x86_64-conda-linux-gnu.cfg, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-alpine shpc-registry automated BioContainers addition for bioconductor-alpine wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-alpinedata shpc-registry automated BioContainers addition for bioconductor-alpinedata wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-alps shpc-registry automated BioContainers addition for bioconductor-alps x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-alpsnmr shpc-registry automated BioContainers addition for bioconductor-alpsnmr pandoc
GITHUB quay.io/biocontainers/bioconductor-alsace shpc-registry automated BioContainers addition for bioconductor-alsace
GITHUB quay.io/biocontainers/bioconductor-altcdfenvs shpc-registry automated BioContainers addition for bioconductor-altcdfenvs
GITHUB quay.io/biocontainers/bioconductor-alternativesplicingevents.hg19 shpc-registry automated BioContainers addition for bioconductor-alternativesplicingevents.hg19
GITHUB quay.io/biocontainers/bioconductor-alternativesplicingevents.hg38 shpc-registry automated BioContainers addition for bioconductor-alternativesplicingevents.hg38
GITHUB quay.io/biocontainers/bioconductor-amaretto shpc-registry automated BioContainers addition for bioconductor-amaretto pandoc, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-amountain shpc-registry automated BioContainers addition for bioconductor-amountain c89, c99
GITHUB quay.io/biocontainers/bioconductor-ampaffyexample shpc-registry automated BioContainers addition for bioconductor-ampaffyexample
GITHUB quay.io/biocontainers/bioconductor-amplican shpc-registry automated BioContainers addition for bioconductor-amplican pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ampliqueso shpc-registry automated BioContainers addition for bioconductor-ampliqueso
GITHUB quay.io/biocontainers/bioconductor-analysispageserver shpc-registry automated BioContainers addition for bioconductor-analysispageserver 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-anamir shpc-registry automated BioContainers addition for bioconductor-anamir gdalserver, pg_verify_checksums, testepsg, pg_standby, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, dap-config
GITHUB quay.io/biocontainers/bioconductor-anaquin shpc-registry automated BioContainers addition for bioconductor-anaquin gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ancombc shpc-registry automated BioContainers addition for bioconductor-ancombc
GITHUB quay.io/biocontainers/bioconductor-aneufinder shpc-registry automated BioContainers addition for bioconductor-aneufinder
GITHUB quay.io/biocontainers/bioconductor-aneufinderdata shpc-registry automated BioContainers addition for bioconductor-aneufinderdata
GITHUB quay.io/biocontainers/bioconductor-anf shpc-registry automated BioContainers addition for bioconductor-anf gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-animalcules shpc-registry automated BioContainers addition for bioconductor-animalcules f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-annaffy shpc-registry automated BioContainers addition for bioconductor-annaffy
GITHUB quay.io/biocontainers/bioconductor-annmap shpc-registry automated BioContainers addition for bioconductor-annmap my_print_defaults, mysql_config, perror
GITHUB quay.io/biocontainers/bioconductor-annotate shpc-registry automated BioContainers addition for bioconductor-annotate
GITHUB quay.io/biocontainers/bioconductor-annotationdbi shpc-registry automated BioContainers addition for bioconductor-annotationdbi
GITHUB quay.io/biocontainers/bioconductor-annotationfilter shpc-registry automated BioContainers addition for bioconductor-annotationfilter gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-annotationforge shpc-registry automated BioContainers addition for bioconductor-annotationforge
GITHUB quay.io/biocontainers/bioconductor-annotationfuncs shpc-registry automated BioContainers addition for bioconductor-annotationfuncs x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-annotationhub shpc-registry automated BioContainers addition for bioconductor-annotationhub
GITHUB quay.io/biocontainers/bioconductor-annotationhubdata shpc-registry automated BioContainers addition for bioconductor-annotationhubdata wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-annotationtools shpc-registry automated BioContainers addition for bioconductor-annotationtools
GITHUB quay.io/biocontainers/bioconductor-annotatr shpc-registry automated BioContainers addition for bioconductor-annotatr wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-anopheles.db0 shpc-registry automated BioContainers addition for bioconductor-anopheles.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-anota shpc-registry automated BioContainers addition for bioconductor-anota
GITHUB quay.io/biocontainers/bioconductor-anota2seq shpc-registry automated BioContainers addition for bioconductor-anota2seq gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-antiprofiles shpc-registry automated BioContainers addition for bioconductor-antiprofiles
GITHUB quay.io/biocontainers/bioconductor-antiprofilesdata shpc-registry automated BioContainers addition for bioconductor-antiprofilesdata
GITHUB quay.io/biocontainers/bioconductor-anvil shpc-registry automated BioContainers addition for bioconductor-anvil
GITHUB quay.io/biocontainers/bioconductor-anvilaz singularity registry hpc automated addition for bioconductor-anvilaz x86_64-conda-linux-gnu.cfg, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-anvilbase singularity registry hpc automated addition for bioconductor-anvilbase x86_64-conda-linux-gnu.cfg, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-anvilbilling shpc-registry automated BioContainers addition for bioconductor-anvilbilling
GITHUB quay.io/biocontainers/bioconductor-anvilgcp singularity registry hpc automated addition for bioconductor-anvilgcp x86_64-conda-linux-gnu.cfg, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-anvilpublish shpc-registry automated BioContainers addition for bioconductor-anvilpublish pandoc
GITHUB quay.io/biocontainers/bioconductor-anvilworkflow singularity registry hpc automated addition for bioconductor-anvilworkflow hb-info, tjbench, pandoc
GITHUB quay.io/biocontainers/bioconductor-apalyzer shpc-registry automated BioContainers addition for bioconductor-apalyzer
GITHUB quay.io/biocontainers/bioconductor-apcomplex shpc-registry automated BioContainers addition for bioconductor-apcomplex
GITHUB quay.io/biocontainers/bioconductor-apeglm shpc-registry automated BioContainers addition for bioconductor-apeglm gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-apl singularity registry hpc automated addition for bioconductor-apl geosop, geos-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-appreci8r shpc-registry automated BioContainers addition for bioconductor-appreci8r 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-arabidopsis.db0 shpc-registry automated BioContainers addition for bioconductor-arabidopsis.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-aracne.networks shpc-registry automated BioContainers addition for bioconductor-aracne.networks wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-aroma.light shpc-registry automated BioContainers addition for bioconductor-aroma.light tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-arrayexpress shpc-registry automated BioContainers addition for bioconductor-arrayexpress
GITHUB quay.io/biocontainers/bioconductor-arrayexpresshts shpc-registry automated BioContainers addition for bioconductor-arrayexpresshts jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink
GITHUB quay.io/biocontainers/bioconductor-arraymvout shpc-registry automated BioContainers addition for bioconductor-arraymvout
GITHUB quay.io/biocontainers/bioconductor-arrayquality shpc-registry automated BioContainers addition for bioconductor-arrayquality
GITHUB quay.io/biocontainers/bioconductor-arrayqualitymetrics shpc-registry automated BioContainers addition for bioconductor-arrayqualitymetrics
GITHUB quay.io/biocontainers/bioconductor-arraytools shpc-registry automated BioContainers addition for bioconductor-arraytools x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-arraytv shpc-registry automated BioContainers addition for bioconductor-arraytv 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-arrmdata shpc-registry automated BioContainers addition for bioconductor-arrmdata
GITHUB quay.io/biocontainers/bioconductor-arrmnormalization shpc-registry automated BioContainers addition for bioconductor-arrmnormalization
GITHUB quay.io/biocontainers/bioconductor-artms shpc-registry automated BioContainers addition for bioconductor-artms x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-asafe shpc-registry automated BioContainers addition for bioconductor-asafe c89, c99
GITHUB quay.io/biocontainers/bioconductor-aseb shpc-registry automated BioContainers addition for bioconductor-aseb
GITHUB quay.io/biocontainers/bioconductor-asgsca shpc-registry automated BioContainers addition for bioconductor-asgsca
GITHUB quay.io/biocontainers/bioconductor-ashkenazimsonchr21 shpc-registry automated BioContainers addition for bioconductor-ashkenazimsonchr21
GITHUB quay.io/biocontainers/bioconductor-asics shpc-registry automated BioContainers addition for bioconductor-asics x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-asicsdata shpc-registry automated BioContainers addition for bioconductor-asicsdata 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-aspediafi shpc-registry automated BioContainers addition for bioconductor-aspediafi
GITHUB quay.io/biocontainers/bioconductor-aspli shpc-registry automated BioContainers addition for bioconductor-aspli pandoc
GITHUB quay.io/biocontainers/bioconductor-assessorf shpc-registry automated BioContainers addition for bioconductor-assessorf x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-assessorfdata shpc-registry automated BioContainers addition for bioconductor-assessorfdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-asset shpc-registry automated BioContainers addition for bioconductor-asset x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-assign shpc-registry automated BioContainers addition for bioconductor-assign
GITHUB quay.io/biocontainers/bioconductor-assorthead singularity registry hpc automated addition for bioconductor-assorthead x86_64-conda-linux-gnu.cfg, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-asurat singularity registry hpc automated addition for bioconductor-asurat installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-ataccogaps singularity registry hpc automated addition for bioconductor-ataccogaps installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, pandoc, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-atacseqqc shpc-registry automated BioContainers addition for bioconductor-atacseqqc gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-atacseqtfea singularity registry hpc automated addition for bioconductor-atacseqtfea installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-atena shpc-registry automated BioContainers addition for bioconductor-atena
GITHUB quay.io/biocontainers/bioconductor-ath1121501.db shpc-registry automated BioContainers addition for bioconductor-ath1121501.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-ath1121501cdf shpc-registry automated BioContainers addition for bioconductor-ath1121501cdf
GITHUB quay.io/biocontainers/bioconductor-ath1121501frmavecs singularity registry hpc automated addition for bioconductor-ath1121501frmavecs x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-ath1121501probe shpc-registry automated BioContainers addition for bioconductor-ath1121501probe
GITHUB quay.io/biocontainers/bioconductor-atlasrdf shpc-registry automated BioContainers addition for bioconductor-atlasrdf bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-atsnp shpc-registry automated BioContainers addition for bioconductor-atsnp x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-attract shpc-registry automated BioContainers addition for bioconductor-attract
GITHUB quay.io/biocontainers/bioconductor-aucell shpc-registry automated BioContainers addition for bioconductor-aucell gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-autonomics shpc-registry automated BioContainers addition for bioconductor-autonomics
GITHUB quay.io/biocontainers/bioconductor-autotuner shpc-registry automated BioContainers addition for bioconductor-autotuner zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-awfisher shpc-registry automated BioContainers addition for bioconductor-awfisher
GITHUB quay.io/biocontainers/bioconductor-awst shpc-registry automated BioContainers addition for bioconductor-awst
GITHUB quay.io/biocontainers/bioconductor-baalchip shpc-registry automated BioContainers addition for bioconductor-baalchip wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-bac shpc-registry automated BioContainers addition for bioconductor-bac
GITHUB quay.io/biocontainers/bioconductor-bacon shpc-registry automated BioContainers addition for bioconductor-bacon
GITHUB quay.io/biocontainers/bioconductor-bader shpc-registry automated BioContainers addition for bioconductor-bader
GITHUB quay.io/biocontainers/bioconductor-badregionfinder shpc-registry automated BioContainers addition for bioconductor-badregionfinder wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-bags shpc-registry automated BioContainers addition for bioconductor-bags
GITHUB quay.io/biocontainers/bioconductor-ballgown shpc-registry automated BioContainers addition for bioconductor-ballgown tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-bambu shpc-registry automated BioContainers addition for bioconductor-bambu xgboost
GITHUB quay.io/biocontainers/bioconductor-bamsignals shpc-registry automated BioContainers addition for bioconductor-bamsignals
GITHUB quay.io/biocontainers/bioconductor-bandits shpc-registry automated BioContainers addition for bioconductor-bandits x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-bandle singularity registry hpc automated addition for bioconductor-bandle zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff, hdp, hrepack, jpeg2hdf, paltohdf
GITHUB quay.io/biocontainers/bioconductor-banocc shpc-registry automated BioContainers addition for bioconductor-banocc gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-barcodetrackr shpc-registry automated BioContainers addition for bioconductor-barcodetrackr
GITHUB quay.io/biocontainers/bioconductor-barley1cdf shpc-registry automated BioContainers addition for bioconductor-barley1cdf
GITHUB quay.io/biocontainers/bioconductor-barley1probe shpc-registry automated BioContainers addition for bioconductor-barley1probe
GITHUB quay.io/biocontainers/bioconductor-basecallqc shpc-registry automated BioContainers addition for bioconductor-basecallqc pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-basespacer shpc-registry automated BioContainers addition for bioconductor-basespacer
GITHUB quay.io/biocontainers/bioconductor-basic4cseq shpc-registry automated BioContainers addition for bioconductor-basic4cseq bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-basics shpc-registry automated BioContainers addition for bioconductor-basics glpsol
GITHUB quay.io/biocontainers/bioconductor-basicstan singularity registry hpc automated addition for bioconductor-basicstan installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-basicstarrseq shpc-registry automated BioContainers addition for bioconductor-basicstarrseq
GITHUB quay.io/biocontainers/bioconductor-basilisk shpc-registry automated BioContainers addition for bioconductor-basilisk
GITHUB quay.io/biocontainers/bioconductor-basilisk.utils shpc-registry automated BioContainers addition for bioconductor-basilisk.utils
GITHUB quay.io/biocontainers/bioconductor-batchelor shpc-registry automated BioContainers addition for bioconductor-batchelor x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-batchqc shpc-registry automated BioContainers addition for bioconductor-batchqc pandoc-citeproc, pandoc, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-bayesknockdown shpc-registry automated BioContainers addition for bioconductor-bayesknockdown c89, c99
GITHUB quay.io/biocontainers/bioconductor-bayespeak shpc-registry automated BioContainers addition for bioconductor-bayespeak 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-bayesspace shpc-registry automated BioContainers addition for bioconductor-bayesspace xgboost, glpsol
GITHUB quay.io/biocontainers/bioconductor-baynorm shpc-registry automated BioContainers addition for bioconductor-baynorm x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-bayseq shpc-registry automated BioContainers addition for bioconductor-bayseq
GITHUB quay.io/biocontainers/bioconductor-bbcanalyzer shpc-registry automated BioContainers addition for bioconductor-bbcanalyzer my_print_defaults, mysql_config, perror, wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-bcellviper shpc-registry automated BioContainers addition for bioconductor-bcellviper
GITHUB quay.io/biocontainers/bioconductor-bcrank shpc-registry automated BioContainers addition for bioconductor-bcrank
GITHUB quay.io/biocontainers/bioconductor-bcseq shpc-registry automated BioContainers addition for bioconductor-bcseq gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-bdmmacorrect shpc-registry automated BioContainers addition for bioconductor-bdmmacorrect x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-beachmat.hdf5 singularity registry hpc automated addition for bioconductor-beachmat.hdf5 pcre2posix_test, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-beachmat shpc-registry automated BioContainers addition for bioconductor-beachmat x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-beadarray shpc-registry automated BioContainers addition for bioconductor-beadarray
GITHUB quay.io/biocontainers/bioconductor-beadarrayexampledata shpc-registry automated BioContainers addition for bioconductor-beadarrayexampledata
GITHUB quay.io/biocontainers/bioconductor-beadarraysnp shpc-registry automated BioContainers addition for bioconductor-beadarraysnp
GITHUB quay.io/biocontainers/bioconductor-beadarrayusecases shpc-registry automated BioContainers addition for bioconductor-beadarrayusecases
GITHUB quay.io/biocontainers/bioconductor-beaddatapackr shpc-registry automated BioContainers addition for bioconductor-beaddatapackr
GITHUB quay.io/biocontainers/bioconductor-beadsorted.saliva.epic shpc-registry automated BioContainers addition for bioconductor-beadsorted.saliva.epic
GITHUB quay.io/biocontainers/bioconductor-bearscc shpc-registry automated BioContainers addition for bioconductor-bearscc 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-beat shpc-registry automated BioContainers addition for bioconductor-beat
GITHUB quay.io/biocontainers/bioconductor-beclear shpc-registry automated BioContainers addition for bioconductor-beclear x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-beer singularity registry hpc automated addition for bioconductor-beer jags, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-benchdamic shpc-registry automated BioContainers addition for bioconductor-benchdamic
GITHUB quay.io/biocontainers/bioconductor-benchmarkfdrdata2019 shpc-registry automated BioContainers addition for bioconductor-benchmarkfdrdata2019
GITHUB quay.io/biocontainers/bioconductor-beta7 shpc-registry automated BioContainers addition for bioconductor-beta7
GITHUB quay.io/biocontainers/bioconductor-bettr singularity registry hpc automated addition for bioconductor-bettr pandoc-lua, x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, pandoc-server, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-bg2 singularity registry hpc automated addition for bioconductor-bg2 hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-bgafun shpc-registry automated BioContainers addition for bioconductor-bgafun 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-bgeecall shpc-registry automated BioContainers addition for bioconductor-bgeecall x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-bgeedb shpc-registry automated BioContainers addition for bioconductor-bgeedb wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-bgmix shpc-registry automated BioContainers addition for bioconductor-bgmix
GITHUB quay.io/biocontainers/bioconductor-bgx shpc-registry automated BioContainers addition for bioconductor-bgx
GITHUB quay.io/biocontainers/bioconductor-bhc shpc-registry automated BioContainers addition for bioconductor-bhc
GITHUB quay.io/biocontainers/bioconductor-bicare shpc-registry automated BioContainers addition for bioconductor-bicare
GITHUB quay.io/biocontainers/bioconductor-bifet shpc-registry automated BioContainers addition for bioconductor-bifet 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-biggr shpc-registry automated BioContainers addition for bioconductor-biggr diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts
GITHUB quay.io/biocontainers/bioconductor-bigmelon shpc-registry automated BioContainers addition for bioconductor-bigmelon wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-bigmemoryextras shpc-registry automated BioContainers addition for bioconductor-bigmemoryextras x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-bigpint shpc-registry automated BioContainers addition for bioconductor-bigpint x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-bindingsitefinder shpc-registry automated BioContainers addition for bioconductor-bindingsitefinder
GITHUB quay.io/biocontainers/bioconductor-bioassayr shpc-registry automated BioContainers addition for bioconductor-bioassayr rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders
GITHUB quay.io/biocontainers/bioconductor-biobase shpc-registry automated BioContainers addition for bioconductor-biobase
GITHUB quay.io/biocontainers/bioconductor-biobroom shpc-registry automated BioContainers addition for bioconductor-biobroom
GITHUB quay.io/biocontainers/bioconductor-biobtreer shpc-registry automated BioContainers addition for bioconductor-biobtreer
GITHUB quay.io/biocontainers/bioconductor-biocancer shpc-registry automated BioContainers addition for bioconductor-biocancer pandoc
GITHUB quay.io/biocontainers/bioconductor-biocartaimage singularity registry hpc automated addition for bioconductor-biocartaimage pcre2posix_test, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, display, identify, import, magick, magick-script, mogrify, montage, convert, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj
GITHUB quay.io/biocontainers/bioconductor-biocbaseutils singularity registry hpc automated addition for bioconductor-biocbaseutils
GITHUB quay.io/biocontainers/bioconductor-biocbook singularity registry hpc automated addition for bioconductor-biocbook deno, esbuild, quarto, quarto.js, sass, git2, pcre2posix_test, hb-info, tjbench, pandoc
GITHUB quay.io/biocontainers/bioconductor-bioccasestudies shpc-registry automated BioContainers addition for bioconductor-bioccasestudies x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-bioccheck shpc-registry automated BioContainers addition for bioconductor-bioccheck
GITHUB quay.io/biocontainers/bioconductor-biocdockermanager shpc-registry automated BioContainers addition for bioconductor-biocdockermanager
GITHUB quay.io/biocontainers/bioconductor-biocfhir singularity registry hpc automated addition for bioconductor-biocfhir glpsol
GITHUB quay.io/biocontainers/bioconductor-biocfilecache shpc-registry automated BioContainers addition for bioconductor-biocfilecache
GITHUB quay.io/biocontainers/bioconductor-biocgenerics shpc-registry automated BioContainers addition for bioconductor-biocgenerics
GITHUB quay.io/biocontainers/bioconductor-biocgraph shpc-registry automated BioContainers addition for bioconductor-biocgraph
GITHUB quay.io/biocontainers/bioconductor-biochail singularity registry hpc automated addition for bioconductor-biochail hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-biochubsshiny singularity registry hpc automated addition for bioconductor-biochubsshiny hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1
GITHUB quay.io/biocontainers/bioconductor-biocinstaller shpc-registry automated BioContainers addition for bioconductor-biocinstaller c89, c99
GITHUB quay.io/biocontainers/bioconductor-biocio shpc-registry automated BioContainers addition for bioconductor-biocio
GITHUB quay.io/biocontainers/bioconductor-biocneighbors shpc-registry automated BioContainers addition for bioconductor-biocneighbors x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-bioconcotk shpc-registry automated BioContainers addition for bioconductor-bioconcotk 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-biocor shpc-registry automated BioContainers addition for bioconductor-biocor gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-biocparallel shpc-registry automated BioContainers addition for bioconductor-biocparallel uconv, tclsh8.5, wish8.5, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-biocpkgtools shpc-registry automated BioContainers addition for bioconductor-biocpkgtools x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-biocroxytest singularity registry hpc automated addition for bioconductor-biocroxytest x86_64-conda-linux-gnu.cfg, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-biocset shpc-registry automated BioContainers addition for bioconductor-biocset
GITHUB quay.io/biocontainers/bioconductor-biocsingular shpc-registry automated BioContainers addition for bioconductor-biocsingular x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-biocsklearn shpc-registry automated BioContainers addition for bioconductor-biocsklearn f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, h5clear
GITHUB quay.io/biocontainers/bioconductor-biocstyle shpc-registry automated BioContainers addition for bioconductor-biocstyle pandoc-citeproc, pandoc
GITHUB quay.io/biocontainers/bioconductor-biocthis shpc-registry automated BioContainers addition for bioconductor-biocthis
GITHUB quay.io/biocontainers/bioconductor-biocversion shpc-registry automated BioContainers addition for bioconductor-biocversion gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-biocviews shpc-registry automated BioContainers addition for bioconductor-biocviews
GITHUB quay.io/biocontainers/bioconductor-biocworkflowtools shpc-registry automated BioContainers addition for bioconductor-biocworkflowtools pandoc-citeproc, pandoc, c89, c99
GITHUB quay.io/biocontainers/bioconductor-biodb shpc-registry automated BioContainers addition for bioconductor-biodb
GITHUB quay.io/biocontainers/bioconductor-biodbchebi shpc-registry automated BioContainers addition for bioconductor-biodbchebi
GITHUB quay.io/biocontainers/bioconductor-biodbexpasy singularity registry hpc automated addition for bioconductor-biodbexpasy
GITHUB quay.io/biocontainers/bioconductor-biodbhmdb shpc-registry automated BioContainers addition for bioconductor-biodbhmdb
GITHUB quay.io/biocontainers/bioconductor-biodbkegg shpc-registry automated BioContainers addition for bioconductor-biodbkegg
GITHUB quay.io/biocontainers/bioconductor-biodblipidmaps shpc-registry automated BioContainers addition for bioconductor-biodblipidmaps
GITHUB quay.io/biocontainers/bioconductor-biodbmirbase singularity registry hpc automated addition for bioconductor-biodbmirbase
GITHUB quay.io/biocontainers/bioconductor-biodbncbi singularity registry hpc automated addition for bioconductor-biodbncbi
GITHUB quay.io/biocontainers/bioconductor-biodbnci singularity registry hpc automated addition for bioconductor-biodbnci
GITHUB quay.io/biocontainers/bioconductor-biodbuniprot shpc-registry automated BioContainers addition for bioconductor-biodbuniprot
GITHUB quay.io/biocontainers/bioconductor-biodist shpc-registry automated BioContainers addition for bioconductor-biodist
GITHUB quay.io/biocontainers/bioconductor-bioga singularity registry hpc automated addition for bioconductor-bioga cllayerinfo, dec265, protoc-28.2.0, wayland-scanner, vpxdec, vpxenc, x265, ffmpeg, ffprobe, h264dec, h264enc, x264, rav1e, pandoc-lua, SvtAv1EncApp, dav1d, aomdec, aomenc, x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, pandoc-server, lame, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config
GITHUB quay.io/biocontainers/bioconductor-bioimagedbs shpc-registry automated BioContainers addition for bioconductor-bioimagedbs SvtAv1DecApp, SvtAv1EncApp, aomdec, aomenc, asn1Coding, asn1Decoding, asn1Parser, ffmpeg, ffprobe, h264dec, h264enc, lame, p11-kit, p11tool, trust, vpxdec, vpxenc, x264, x265, pandoc-server, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv
GITHUB quay.io/biocontainers/bioconductor-biomart shpc-registry automated BioContainers addition for bioconductor-biomart
GITHUB quay.io/biocontainers/bioconductor-biomartgogenesets singularity registry hpc automated addition for bioconductor-biomartgogenesets pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete
GITHUB quay.io/biocontainers/bioconductor-biomformat shpc-registry automated BioContainers addition for bioconductor-biomformat
GITHUB quay.io/biocontainers/bioconductor-biomm shpc-registry automated BioContainers addition for bioconductor-biomm jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bioconductor-biomvcclass shpc-registry automated BioContainers addition for bioconductor-biomvcclass
GITHUB quay.io/biocontainers/bioconductor-biomvrcns shpc-registry automated BioContainers addition for bioconductor-biomvrcns
GITHUB quay.io/biocontainers/bioconductor-bionar singularity registry hpc automated addition for bioconductor-bionar installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-bionero shpc-registry automated BioContainers addition for bioconductor-bionero
GITHUB quay.io/biocontainers/bioconductor-bionet shpc-registry automated BioContainers addition for bioconductor-bionet
GITHUB quay.io/biocontainers/bioconductor-bionetstat shpc-registry automated BioContainers addition for bioconductor-bionetstat 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-bioplex shpc-registry automated BioContainers addition for bioconductor-bioplex
GITHUB quay.io/biocontainers/bioconductor-bioqc shpc-registry automated BioContainers addition for bioconductor-bioqc ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-bioseqclass shpc-registry automated BioContainers addition for bioconductor-bioseqclass 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-biosigner shpc-registry automated BioContainers addition for bioconductor-biosigner
GITHUB quay.io/biocontainers/bioconductor-biostrings shpc-registry automated BioContainers addition for bioconductor-biostrings
GITHUB quay.io/biocontainers/bioconductor-biosvd shpc-registry automated BioContainers addition for bioconductor-biosvd 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-biotip shpc-registry automated BioContainers addition for bioconductor-biotip
GITHUB quay.io/biocontainers/bioconductor-biotmle shpc-registry automated BioContainers addition for bioconductor-biotmle gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-biotmledata shpc-registry automated BioContainers addition for bioconductor-biotmledata gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-biovizbase shpc-registry automated BioContainers addition for bioconductor-biovizbase
GITHUB quay.io/biocontainers/bioconductor-birewire shpc-registry automated BioContainers addition for bioconductor-birewire glpsol
GITHUB quay.io/biocontainers/bioconductor-birta shpc-registry automated BioContainers addition for bioconductor-birta 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-birte shpc-registry automated BioContainers addition for bioconductor-birte c89, c99
GITHUB quay.io/biocontainers/bioconductor-biscuiteer shpc-registry automated BioContainers addition for bioconductor-biscuiteer
GITHUB quay.io/biocontainers/bioconductor-biscuiteerdata shpc-registry automated BioContainers addition for bioconductor-biscuiteerdata
GITHUB quay.io/biocontainers/bioconductor-biseq shpc-registry automated BioContainers addition for bioconductor-biseq
GITHUB quay.io/biocontainers/bioconductor-bitseq shpc-registry automated BioContainers addition for bioconductor-bitseq
GITHUB quay.io/biocontainers/bioconductor-blacksheepr shpc-registry automated BioContainers addition for bioconductor-blacksheepr
GITHUB quay.io/biocontainers/bioconductor-bladderbatch shpc-registry automated BioContainers addition for bioconductor-bladderbatch
GITHUB quay.io/biocontainers/bioconductor-blima shpc-registry automated BioContainers addition for bioconductor-blima
GITHUB quay.io/biocontainers/bioconductor-blimatestingdata shpc-registry automated BioContainers addition for bioconductor-blimatestingdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-blma shpc-registry automated BioContainers addition for bioconductor-blma gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-bloodcancermultiomics2017 shpc-registry automated BioContainers addition for bioconductor-bloodcancermultiomics2017 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-bloodgen3module shpc-registry automated BioContainers addition for bioconductor-bloodgen3module x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-bluster shpc-registry automated BioContainers addition for bioconductor-bluster glpsol
GITHUB quay.io/biocontainers/bioconductor-bnbc shpc-registry automated BioContainers addition for bioconductor-bnbc mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, mpifort, mpic++, mpicc
GITHUB quay.io/biocontainers/bioconductor-bnem shpc-registry automated BioContainers addition for bioconductor-bnem diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts
GITHUB quay.io/biocontainers/bioconductor-bobafit singularity registry hpc automated addition for bioconductor-bobafit installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-bodymaprat shpc-registry automated BioContainers addition for bioconductor-bodymaprat x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-borealis singularity registry hpc automated addition for bioconductor-borealis installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-bovine.db shpc-registry automated BioContainers addition for bioconductor-bovine.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-bovine.db0 shpc-registry automated BioContainers addition for bioconductor-bovine.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-bovinecdf shpc-registry automated BioContainers addition for bioconductor-bovinecdf
GITHUB quay.io/biocontainers/bioconductor-bovineprobe shpc-registry automated BioContainers addition for bioconductor-bovineprobe
GITHUB quay.io/biocontainers/bioconductor-bprmeth shpc-registry automated BioContainers addition for bioconductor-bprmeth pandoc-citeproc, pandoc, wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-brain shpc-registry automated BioContainers addition for bioconductor-brain
GITHUB quay.io/biocontainers/bioconductor-brainflowprobes shpc-registry automated BioContainers addition for bioconductor-brainflowprobes
GITHUB quay.io/biocontainers/bioconductor-brainimager shpc-registry automated BioContainers addition for bioconductor-brainimager gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-brainimagerdata shpc-registry automated BioContainers addition for bioconductor-brainimagerdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-brainsaber shpc-registry automated BioContainers addition for bioconductor-brainsaber
GITHUB quay.io/biocontainers/bioconductor-brainstars shpc-registry automated BioContainers addition for bioconductor-brainstars x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-branchpointer shpc-registry automated BioContainers addition for bioconductor-branchpointer wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-breakpointr shpc-registry automated BioContainers addition for bioconductor-breakpointr x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-breakpointrdata shpc-registry automated BioContainers addition for bioconductor-breakpointrdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-breastcancermainz shpc-registry automated BioContainers addition for bioconductor-breastcancermainz
GITHUB quay.io/biocontainers/bioconductor-breastcancernki shpc-registry automated BioContainers addition for bioconductor-breastcancernki
GITHUB quay.io/biocontainers/bioconductor-breastcancertransbig shpc-registry automated BioContainers addition for bioconductor-breastcancertransbig
GITHUB quay.io/biocontainers/bioconductor-breastcancerunt shpc-registry automated BioContainers addition for bioconductor-breastcancerunt
GITHUB quay.io/biocontainers/bioconductor-breastcancerupp shpc-registry automated BioContainers addition for bioconductor-breastcancerupp
GITHUB quay.io/biocontainers/bioconductor-breastcancervdx shpc-registry automated BioContainers addition for bioconductor-breastcancervdx
GITHUB quay.io/biocontainers/bioconductor-brendadb shpc-registry automated BioContainers addition for bioconductor-brendadb
GITHUB quay.io/biocontainers/bioconductor-brgedata shpc-registry automated BioContainers addition for bioconductor-brgedata gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-brgenomics shpc-registry automated BioContainers addition for bioconductor-brgenomics
GITHUB quay.io/biocontainers/bioconductor-bridge shpc-registry automated BioContainers addition for bioconductor-bridge
GITHUB quay.io/biocontainers/bioconductor-bridgedbr shpc-registry automated BioContainers addition for bioconductor-bridgedbr jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bioconductor-broadseq singularity registry hpc automated addition for bioconductor-broadseq pandoc-lua, x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, pandoc-server, numpy-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-bronchialil13 shpc-registry automated BioContainers addition for bioconductor-bronchialil13
GITHUB quay.io/biocontainers/bioconductor-browserviz shpc-registry automated BioContainers addition for bioconductor-browserviz gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-browservizdemo shpc-registry automated BioContainers addition for bioconductor-browservizdemo
GITHUB quay.io/biocontainers/bioconductor-bsgenome shpc-registry automated BioContainers addition for bioconductor-bsgenome
GITHUB quay.io/biocontainers/bioconductor-bsseq shpc-registry automated BioContainers addition for bioconductor-bsseq
GITHUB quay.io/biocontainers/bioconductor-bsseqdata shpc-registry automated BioContainers addition for bioconductor-bsseqdata
GITHUB quay.io/biocontainers/bioconductor-bsubtiliscdf shpc-registry automated BioContainers addition for bioconductor-bsubtiliscdf
GITHUB quay.io/biocontainers/bioconductor-bsubtilisprobe shpc-registry automated BioContainers addition for bioconductor-bsubtilisprobe
GITHUB quay.io/biocontainers/bioconductor-bubbletree shpc-registry automated BioContainers addition for bioconductor-bubbletree pandoc-citeproc, pandoc, wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-bufferedmatrix shpc-registry automated BioContainers addition for bioconductor-bufferedmatrix
GITHUB quay.io/biocontainers/bioconductor-bufferedmatrixmethods shpc-registry automated BioContainers addition for bioconductor-bufferedmatrixmethods
GITHUB quay.io/biocontainers/bioconductor-bugphyzz singularity registry hpc automated addition for bioconductor-bugphyzz x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-bugsigdbr shpc-registry automated BioContainers addition for bioconductor-bugsigdbr
GITHUB quay.io/biocontainers/bioconductor-bumhmm shpc-registry automated BioContainers addition for bioconductor-bumhmm gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-bumphunter shpc-registry automated BioContainers addition for bioconductor-bumphunter
GITHUB quay.io/biocontainers/bioconductor-bumpymatrix shpc-registry automated BioContainers addition for bioconductor-bumpymatrix
GITHUB quay.io/biocontainers/bioconductor-bus shpc-registry automated BioContainers addition for bioconductor-bus
GITHUB quay.io/biocontainers/bioconductor-buscorrect shpc-registry automated BioContainers addition for bioconductor-buscorrect x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-busparse shpc-registry automated BioContainers addition for bioconductor-busparse
GITHUB quay.io/biocontainers/bioconductor-busseq shpc-registry automated BioContainers addition for bioconductor-busseq
GITHUB quay.io/biocontainers/bioconductor-cadd.v1.6.hg19 singularity registry hpc automated addition for bioconductor-cadd.v1.6.hg19 pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-cadd.v1.6.hg38 singularity registry hpc automated addition for bioconductor-cadd.v1.6.hg38 pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-cadra singularity registry hpc automated addition for bioconductor-cadra pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete
GITHUB quay.io/biocontainers/bioconductor-caen shpc-registry automated BioContainers addition for bioconductor-caen
GITHUB quay.io/biocontainers/bioconductor-cafe shpc-registry automated BioContainers addition for bioconductor-cafe
GITHUB quay.io/biocontainers/bioconductor-cagefightr shpc-registry automated BioContainers addition for bioconductor-cagefightr 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cageminer shpc-registry automated BioContainers addition for bioconductor-cageminer
GITHUB quay.io/biocontainers/bioconductor-cager shpc-registry automated BioContainers addition for bioconductor-cager
GITHUB quay.io/biocontainers/bioconductor-calib shpc-registry automated BioContainers addition for bioconductor-calib gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-calm shpc-registry automated BioContainers addition for bioconductor-calm
GITHUB quay.io/biocontainers/bioconductor-camera shpc-registry automated BioContainers addition for bioconductor-camera zipcmp, zipmerge, ziptool, gif2hdf, glpsol, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8
GITHUB quay.io/biocontainers/bioconductor-camthc shpc-registry automated BioContainers addition for bioconductor-camthc extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/bioconductor-camutqc singularity registry hpc automated addition for bioconductor-camutqc pandoc-lua, x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, pandoc-server, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-cancerclass shpc-registry automated BioContainers addition for bioconductor-cancerclass
GITHUB quay.io/biocontainers/bioconductor-cancerdata shpc-registry automated BioContainers addition for bioconductor-cancerdata
GITHUB quay.io/biocontainers/bioconductor-cancerinsilico shpc-registry automated BioContainers addition for bioconductor-cancerinsilico 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cancermutationanalysis shpc-registry automated BioContainers addition for bioconductor-cancermutationanalysis x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-cancersubtypes shpc-registry automated BioContainers addition for bioconductor-cancersubtypes wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cand shpc-registry automated BioContainers addition for bioconductor-cand bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-canine.db shpc-registry automated BioContainers addition for bioconductor-canine.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-canine.db0 shpc-registry automated BioContainers addition for bioconductor-canine.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-canine2.db shpc-registry automated BioContainers addition for bioconductor-canine2.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-canine2cdf shpc-registry automated BioContainers addition for bioconductor-canine2cdf
GITHUB quay.io/biocontainers/bioconductor-canine2probe shpc-registry automated BioContainers addition for bioconductor-canine2probe
GITHUB quay.io/biocontainers/bioconductor-caninecdf shpc-registry automated BioContainers addition for bioconductor-caninecdf
GITHUB quay.io/biocontainers/bioconductor-canineprobe shpc-registry automated BioContainers addition for bioconductor-canineprobe
GITHUB quay.io/biocontainers/bioconductor-caomicsv shpc-registry automated BioContainers addition for bioconductor-caomicsv
GITHUB quay.io/biocontainers/bioconductor-cardelino singularity registry hpc automated addition for bioconductor-cardelino installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-cardinal shpc-registry automated BioContainers addition for bioconductor-cardinal fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-cardinalio singularity registry hpc automated addition for bioconductor-cardinalio pcre2posix_test, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-cardinalworkflows shpc-registry automated BioContainers addition for bioconductor-cardinalworkflows fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/bioconductor-carnival shpc-registry automated BioContainers addition for bioconductor-carnival pandoc
GITHUB quay.io/biocontainers/bioconductor-casper shpc-registry automated BioContainers addition for bioconductor-casper
GITHUB quay.io/biocontainers/bioconductor-catalyst shpc-registry automated BioContainers addition for bioconductor-catalyst gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-category shpc-registry automated BioContainers addition for bioconductor-category
GITHUB quay.io/biocontainers/bioconductor-categorycompare shpc-registry automated BioContainers addition for bioconductor-categorycompare Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage
GITHUB quay.io/biocontainers/bioconductor-causalr shpc-registry automated BioContainers addition for bioconductor-causalr bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-cbaf shpc-registry automated BioContainers addition for bioconductor-cbaf extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/bioconductor-cbea singularity registry hpc automated addition for bioconductor-cbea installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-cbioportaldata shpc-registry automated BioContainers addition for bioconductor-cbioportaldata
GITHUB quay.io/biocontainers/bioconductor-cbnplot singularity registry hpc automated addition for bioconductor-cbnplot hb-info, tjbench, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1
GITHUB quay.io/biocontainers/bioconductor-cbpmanager shpc-registry automated BioContainers addition for bioconductor-cbpmanager pandoc
GITHUB quay.io/biocontainers/bioconductor-ccdata shpc-registry automated BioContainers addition for bioconductor-ccdata wget
GITHUB quay.io/biocontainers/bioconductor-ccfindr shpc-registry automated BioContainers addition for bioconductor-ccfindr aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info, opal_wrapper, orte-clean, orte-info, orte-server
GITHUB quay.io/biocontainers/bioconductor-ccimpute singularity registry hpc automated addition for bioconductor-ccimpute
GITHUB quay.io/biocontainers/bioconductor-ccl4 shpc-registry automated BioContainers addition for bioconductor-ccl4
GITHUB quay.io/biocontainers/bioconductor-ccmap shpc-registry automated BioContainers addition for bioconductor-ccmap xgboost, wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ccplotr singularity registry hpc automated addition for bioconductor-ccplotr pcre2posix_test, hb-info, glpsol, tjbench
GITHUB quay.io/biocontainers/bioconductor-ccpromise shpc-registry automated BioContainers addition for bioconductor-ccpromise c89, c99
GITHUB quay.io/biocontainers/bioconductor-ccrepe shpc-registry automated BioContainers addition for bioconductor-ccrepe
GITHUB quay.io/biocontainers/bioconductor-cctutorial shpc-registry automated BioContainers addition for bioconductor-cctutorial
GITHUB quay.io/biocontainers/bioconductor-cdi singularity registry hpc automated addition for bioconductor-cdi pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-celaref shpc-registry automated BioContainers addition for bioconductor-celaref x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-celarefdata shpc-registry automated BioContainers addition for bioconductor-celarefdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-celda shpc-registry automated BioContainers addition for bioconductor-celda x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify
GITHUB quay.io/biocontainers/bioconductor-celegans.db shpc-registry automated BioContainers addition for bioconductor-celegans.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-celeganscdf shpc-registry automated BioContainers addition for bioconductor-celeganscdf
GITHUB quay.io/biocontainers/bioconductor-celegansprobe shpc-registry automated BioContainers addition for bioconductor-celegansprobe
GITHUB quay.io/biocontainers/bioconductor-cellarepertorium shpc-registry automated BioContainers addition for bioconductor-cellarepertorium
GITHUB quay.io/biocontainers/bioconductor-cellbarcode shpc-registry automated BioContainers addition for bioconductor-cellbarcode
GITHUB quay.io/biocontainers/bioconductor-cellbaser shpc-registry automated BioContainers addition for bioconductor-cellbaser gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cellbench shpc-registry automated BioContainers addition for bioconductor-cellbench x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-celldex shpc-registry automated BioContainers addition for bioconductor-celldex
GITHUB quay.io/biocontainers/bioconductor-cellgrowth shpc-registry automated BioContainers addition for bioconductor-cellgrowth gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cellhts2 shpc-registry automated BioContainers addition for bioconductor-cellhts2 x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-cellid shpc-registry automated BioContainers addition for bioconductor-cellid geosop, geos-config, glpsol
GITHUB quay.io/biocontainers/bioconductor-cellity shpc-registry automated BioContainers addition for bioconductor-cellity
GITHUB quay.io/biocontainers/bioconductor-cellmapper shpc-registry automated BioContainers addition for bioconductor-cellmapper
GITHUB quay.io/biocontainers/bioconductor-cellmapperdata shpc-registry automated BioContainers addition for bioconductor-cellmapperdata wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cellmigration shpc-registry automated BioContainers addition for bioconductor-cellmigration
GITHUB quay.io/biocontainers/bioconductor-cellmixs shpc-registry automated BioContainers addition for bioconductor-cellmixs x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-cellnoptr shpc-registry automated BioContainers addition for bioconductor-cellnoptr diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts
GITHUB quay.io/biocontainers/bioconductor-cellscape shpc-registry automated BioContainers addition for bioconductor-cellscape gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cellscore shpc-registry automated BioContainers addition for bioconductor-cellscore 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-celltrails shpc-registry automated BioContainers addition for bioconductor-celltrails x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-celltree shpc-registry automated BioContainers addition for bioconductor-celltree
GITHUB quay.io/biocontainers/bioconductor-cellxgenedp singularity registry hpc automated addition for bioconductor-cellxgenedp
GITHUB quay.io/biocontainers/bioconductor-cemitool shpc-registry automated BioContainers addition for bioconductor-cemitool pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-censcyt shpc-registry automated BioContainers addition for bioconductor-censcyt
GITHUB quay.io/biocontainers/bioconductor-cepo shpc-registry automated BioContainers addition for bioconductor-cepo
GITHUB quay.io/biocontainers/bioconductor-cernanetsim shpc-registry automated BioContainers addition for bioconductor-cernanetsim
GITHUB quay.io/biocontainers/bioconductor-cetf shpc-registry automated BioContainers addition for bioconductor-cetf Cytoscape, cytoscape.sh, gen_vmoptions.sh, jpackage, curve_keygen, cups-config, ippeveprinter, ipptool, glpsol, f2py3.10
GITHUB quay.io/biocontainers/bioconductor-ceu1kg shpc-registry automated BioContainers addition for bioconductor-ceu1kg 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ceu1kgv shpc-registry automated BioContainers addition for bioconductor-ceu1kgv x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-ceuhm3 shpc-registry automated BioContainers addition for bioconductor-ceuhm3 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cexor shpc-registry automated BioContainers addition for bioconductor-cexor pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-cfassay shpc-registry automated BioContainers addition for bioconductor-cfassay
GITHUB quay.io/biocontainers/bioconductor-cfdnakit singularity registry hpc automated addition for bioconductor-cfdnakit pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete
GITHUB quay.io/biocontainers/bioconductor-cfdnapro shpc-registry automated BioContainers addition for bioconductor-cfdnapro
GITHUB quay.io/biocontainers/bioconductor-cftools singularity registry hpc automated addition for bioconductor-cftools hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-cftoolsdata singularity registry hpc automated addition for bioconductor-cftoolsdata pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-cgdv17 shpc-registry automated BioContainers addition for bioconductor-cgdv17 x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-cgen shpc-registry automated BioContainers addition for bioconductor-cgen
GITHUB quay.io/biocontainers/bioconductor-cghbase shpc-registry automated BioContainers addition for bioconductor-cghbase
GITHUB quay.io/biocontainers/bioconductor-cghcall shpc-registry automated BioContainers addition for bioconductor-cghcall
GITHUB quay.io/biocontainers/bioconductor-cghmcr shpc-registry automated BioContainers addition for bioconductor-cghmcr
GITHUB quay.io/biocontainers/bioconductor-cghnormaliter shpc-registry automated BioContainers addition for bioconductor-cghnormaliter
GITHUB quay.io/biocontainers/bioconductor-cghregions shpc-registry automated BioContainers addition for bioconductor-cghregions
GITHUB quay.io/biocontainers/bioconductor-champ shpc-registry automated BioContainers addition for bioconductor-champ pandoc, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-champdata shpc-registry automated BioContainers addition for bioconductor-champdata
GITHUB quay.io/biocontainers/bioconductor-charge shpc-registry automated BioContainers addition for bioconductor-charge 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-charm shpc-registry automated BioContainers addition for bioconductor-charm wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-charmdata shpc-registry automated BioContainers addition for bioconductor-charmdata wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chemminedrugs shpc-registry automated BioContainers addition for bioconductor-chemminedrugs rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders
GITHUB quay.io/biocontainers/bioconductor-chemmineob singularity registry hpc automated addition for bioconductor-chemmineob 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, obfitall, obmm, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop, obrms, obrotamer, obrotate, obspectrophore, obsym, obtautomer, obthermo, roundtrip, python3.1
GITHUB quay.io/biocontainers/bioconductor-chemminer shpc-registry automated BioContainers addition for bioconductor-chemminer rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders
GITHUB quay.io/biocontainers/bioconductor-chetah shpc-registry automated BioContainers addition for bioconductor-chetah
GITHUB quay.io/biocontainers/bioconductor-chic.data shpc-registry automated BioContainers addition for bioconductor-chic.data x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-chic shpc-registry automated BioContainers addition for bioconductor-chic 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chicago shpc-registry automated BioContainers addition for bioconductor-chicago
GITHUB quay.io/biocontainers/bioconductor-chicken.db shpc-registry automated BioContainers addition for bioconductor-chicken.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-chicken.db0 shpc-registry automated BioContainers addition for bioconductor-chicken.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chickencdf shpc-registry automated BioContainers addition for bioconductor-chickencdf
GITHUB quay.io/biocontainers/bioconductor-chickenprobe shpc-registry automated BioContainers addition for bioconductor-chickenprobe
GITHUB quay.io/biocontainers/bioconductor-chihaya singularity registry hpc automated addition for bioconductor-chihaya hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-chimera shpc-registry automated BioContainers addition for bioconductor-chimera STAR, STARlong, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-chimeraviz shpc-registry automated BioContainers addition for bioconductor-chimeraviz pandoc-citeproc, pandoc, wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chimp.db0 shpc-registry automated BioContainers addition for bioconductor-chimp.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chimphumanbraindata shpc-registry automated BioContainers addition for bioconductor-chimphumanbraindata
GITHUB quay.io/biocontainers/bioconductor-chipanalyser shpc-registry automated BioContainers addition for bioconductor-chipanalyser gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chipcomp shpc-registry automated BioContainers addition for bioconductor-chipcomp wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-chipenrich.data shpc-registry automated BioContainers addition for bioconductor-chipenrich.data gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chipenrich shpc-registry automated BioContainers addition for bioconductor-chipenrich gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chipexoqual shpc-registry automated BioContainers addition for bioconductor-chipexoqual pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chipexoqualexample shpc-registry automated BioContainers addition for bioconductor-chipexoqualexample gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chippeakanno shpc-registry automated BioContainers addition for bioconductor-chippeakanno
GITHUB quay.io/biocontainers/bioconductor-chipqc shpc-registry automated BioContainers addition for bioconductor-chipqc
GITHUB quay.io/biocontainers/bioconductor-chipseeker shpc-registry automated BioContainers addition for bioconductor-chipseeker pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-chipseq shpc-registry automated BioContainers addition for bioconductor-chipseq
GITHUB quay.io/biocontainers/bioconductor-chipseqdbdata shpc-registry automated BioContainers addition for bioconductor-chipseqdbdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-chipseqr shpc-registry automated BioContainers addition for bioconductor-chipseqr
GITHUB quay.io/biocontainers/bioconductor-chipseqspike shpc-registry automated BioContainers addition for bioconductor-chipseqspike x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-chipsim shpc-registry automated BioContainers addition for bioconductor-chipsim
GITHUB quay.io/biocontainers/bioconductor-chipxpress shpc-registry automated BioContainers addition for bioconductor-chipxpress
GITHUB quay.io/biocontainers/bioconductor-chipxpressdata shpc-registry automated BioContainers addition for bioconductor-chipxpressdata
GITHUB quay.io/biocontainers/bioconductor-chopsticks shpc-registry automated BioContainers addition for bioconductor-chopsticks
GITHUB quay.io/biocontainers/bioconductor-chrogps shpc-registry automated BioContainers addition for bioconductor-chrogps gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chromdraw shpc-registry automated BioContainers addition for bioconductor-chromdraw wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-chromheatmap shpc-registry automated BioContainers addition for bioconductor-chromheatmap
GITHUB quay.io/biocontainers/bioconductor-chromhmmdata shpc-registry automated BioContainers addition for bioconductor-chromhmmdata
GITHUB quay.io/biocontainers/bioconductor-chromplot shpc-registry automated BioContainers addition for bioconductor-chromplot wget
GITHUB quay.io/biocontainers/bioconductor-chromscape shpc-registry automated BioContainers addition for bioconductor-chromscape pandoc-server, glpsol, pandoc
GITHUB quay.io/biocontainers/bioconductor-chromstar shpc-registry automated BioContainers addition for bioconductor-chromstar wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chromstardata shpc-registry automated BioContainers addition for bioconductor-chromstardata wget
GITHUB quay.io/biocontainers/bioconductor-chromswitch shpc-registry automated BioContainers addition for bioconductor-chromswitch gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chromvar shpc-registry automated BioContainers addition for bioconductor-chromvar gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-chronos shpc-registry automated BioContainers addition for bioconductor-chronos
GITHUB quay.io/biocontainers/bioconductor-cicero shpc-registry automated BioContainers addition for bioconductor-cicero x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-cimice shpc-registry automated BioContainers addition for bioconductor-cimice
GITHUB quay.io/biocontainers/bioconductor-cindex shpc-registry automated BioContainers addition for bioconductor-cindex wget
GITHUB quay.io/biocontainers/bioconductor-circrnaprofiler shpc-registry automated BioContainers addition for bioconductor-circrnaprofiler
GITHUB quay.io/biocontainers/bioconductor-circseqaligntk singularity registry hpc automated addition for bioconductor-circseqaligntk installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-cispath shpc-registry automated BioContainers addition for bioconductor-cispath
GITHUB quay.io/biocontainers/bioconductor-citefuse shpc-registry automated BioContainers addition for bioconductor-citefuse
GITHUB quay.io/biocontainers/bioconductor-citruscdf shpc-registry automated BioContainers addition for bioconductor-citruscdf
GITHUB quay.io/biocontainers/bioconductor-citrusprobe shpc-registry automated BioContainers addition for bioconductor-citrusprobe
GITHUB quay.io/biocontainers/bioconductor-clariomdhumanprobeset.db shpc-registry automated BioContainers addition for bioconductor-clariomdhumanprobeset.db
GITHUB quay.io/biocontainers/bioconductor-clariomdhumantranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-clariomdhumantranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-clariomshumantranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-clariomshumantranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-clariomsmousetranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-clariomsmousetranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-clariomsrathttranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-clariomsrathttranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-clariomsrattranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-clariomsrattranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-classifyr shpc-registry automated BioContainers addition for bioconductor-classifyr 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cleanupdtseq shpc-registry automated BioContainers addition for bioconductor-cleanupdtseq
GITHUB quay.io/biocontainers/bioconductor-cleanuprnaseq singularity registry hpc automated addition for bioconductor-cleanuprnaseq pandoc-lua, x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, pandoc-server, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-cleaver shpc-registry automated BioContainers addition for bioconductor-cleaver
GITHUB quay.io/biocontainers/bioconductor-clevrvis singularity registry hpc automated addition for bioconductor-clevrvis hb-info, tjbench, glpsol, pandoc
GITHUB quay.io/biocontainers/bioconductor-clippda shpc-registry automated BioContainers addition for bioconductor-clippda
GITHUB quay.io/biocontainers/bioconductor-clipper shpc-registry automated BioContainers addition for bioconductor-clipper glpsol
GITHUB quay.io/biocontainers/bioconductor-cliprofiler shpc-registry automated BioContainers addition for bioconductor-cliprofiler
GITHUB quay.io/biocontainers/bioconductor-cliquems shpc-registry automated BioContainers addition for bioconductor-cliquems zipcmp, zipmerge, ziptool, gif2hdf, glpsol, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8
GITHUB quay.io/biocontainers/bioconductor-cll shpc-registry automated BioContainers addition for bioconductor-cll
GITHUB quay.io/biocontainers/bioconductor-cllmethylation shpc-registry automated BioContainers addition for bioconductor-cllmethylation 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-clomial shpc-registry automated BioContainers addition for bioconductor-clomial
GITHUB quay.io/biocontainers/bioconductor-clonality shpc-registry automated BioContainers addition for bioconductor-clonality
GITHUB quay.io/biocontainers/bioconductor-clonotyper shpc-registry automated BioContainers addition for bioconductor-clonotyper
GITHUB quay.io/biocontainers/bioconductor-clst shpc-registry automated BioContainers addition for bioconductor-clst
GITHUB quay.io/biocontainers/bioconductor-clstutils shpc-registry automated BioContainers addition for bioconductor-clstutils
GITHUB quay.io/biocontainers/bioconductor-clumsid shpc-registry automated BioContainers addition for bioconductor-clumsid zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-clumsiddata shpc-registry automated BioContainers addition for bioconductor-clumsiddata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-clustcomp shpc-registry automated BioContainers addition for bioconductor-clustcomp
GITHUB quay.io/biocontainers/bioconductor-clusterexperiment shpc-registry automated BioContainers addition for bioconductor-clusterexperiment f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-clusterfoldsimilarity singularity registry hpc automated addition for bioconductor-clusterfoldsimilarity pandoc-lua, x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, pandoc-server, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-clusterjudge shpc-registry automated BioContainers addition for bioconductor-clusterjudge gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-clusterprofiler shpc-registry automated BioContainers addition for bioconductor-clusterprofiler
GITHUB quay.io/biocontainers/bioconductor-clusterseq shpc-registry automated BioContainers addition for bioconductor-clusterseq gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-clustersignificance shpc-registry automated BioContainers addition for bioconductor-clustersignificance
GITHUB quay.io/biocontainers/bioconductor-clusterstab shpc-registry automated BioContainers addition for bioconductor-clusterstab
GITHUB quay.io/biocontainers/bioconductor-clustifyr shpc-registry automated BioContainers addition for bioconductor-clustifyr
GITHUB quay.io/biocontainers/bioconductor-clustifyrdatahub shpc-registry automated BioContainers addition for bioconductor-clustifyrdatahub
GITHUB quay.io/biocontainers/bioconductor-clustirr singularity registry hpc automated addition for bioconductor-clustirr pcre2posix_test, hb-info, glpsol, tjbench, pandoc
GITHUB quay.io/biocontainers/bioconductor-cma shpc-registry automated BioContainers addition for bioconductor-cma
GITHUB quay.io/biocontainers/bioconductor-cmap shpc-registry automated BioContainers addition for bioconductor-cmap x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-cmap2data shpc-registry automated BioContainers addition for bioconductor-cmap2data
GITHUB quay.io/biocontainers/bioconductor-cmapr shpc-registry automated BioContainers addition for bioconductor-cmapr
GITHUB quay.io/biocontainers/bioconductor-cn.farms shpc-registry automated BioContainers addition for bioconductor-cn.farms
GITHUB quay.io/biocontainers/bioconductor-cn.mops shpc-registry automated BioContainers addition for bioconductor-cn.mops
GITHUB quay.io/biocontainers/bioconductor-cnanorm shpc-registry automated BioContainers addition for bioconductor-cnanorm
GITHUB quay.io/biocontainers/bioconductor-cner shpc-registry automated BioContainers addition for bioconductor-cner
GITHUB quay.io/biocontainers/bioconductor-cnordt shpc-registry automated BioContainers addition for bioconductor-cnordt diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts
GITHUB quay.io/biocontainers/bioconductor-cnorfeeder shpc-registry automated BioContainers addition for bioconductor-cnorfeeder diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts
GITHUB quay.io/biocontainers/bioconductor-cnorfuzzy shpc-registry automated BioContainers addition for bioconductor-cnorfuzzy diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts
GITHUB quay.io/biocontainers/bioconductor-cnorode shpc-registry automated BioContainers addition for bioconductor-cnorode diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts
GITHUB quay.io/biocontainers/bioconductor-cnpbayes shpc-registry automated BioContainers addition for bioconductor-cnpbayes gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cntools shpc-registry automated BioContainers addition for bioconductor-cntools
GITHUB quay.io/biocontainers/bioconductor-cnvfilter shpc-registry automated BioContainers addition for bioconductor-cnvfilter
GITHUB quay.io/biocontainers/bioconductor-cnvgears shpc-registry automated BioContainers addition for bioconductor-cnvgears
GITHUB quay.io/biocontainers/bioconductor-cnvgsa shpc-registry automated BioContainers addition for bioconductor-cnvgsa
GITHUB quay.io/biocontainers/bioconductor-cnvgsadata shpc-registry automated BioContainers addition for bioconductor-cnvgsadata
GITHUB quay.io/biocontainers/bioconductor-cnviz shpc-registry automated BioContainers addition for bioconductor-cnviz
GITHUB quay.io/biocontainers/bioconductor-cnvmetrics singularity registry hpc automated addition for bioconductor-cnvmetrics installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-cnvpanelizer shpc-registry automated BioContainers addition for bioconductor-cnvpanelizer wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-cnvranger shpc-registry automated BioContainers addition for bioconductor-cnvranger x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-cnvrd2 shpc-registry automated BioContainers addition for bioconductor-cnvrd2 jags
GITHUB quay.io/biocontainers/bioconductor-cnvtools shpc-registry automated BioContainers addition for bioconductor-cnvtools 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cobindr shpc-registry automated BioContainers addition for bioconductor-cobindr 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cocitestats shpc-registry automated BioContainers addition for bioconductor-cocitestats
GITHUB quay.io/biocontainers/bioconductor-cocoa shpc-registry automated BioContainers addition for bioconductor-cocoa
GITHUB quay.io/biocontainers/bioconductor-codelink shpc-registry automated BioContainers addition for bioconductor-codelink
GITHUB quay.io/biocontainers/bioconductor-codex shpc-registry automated BioContainers addition for bioconductor-codex tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-coexnet shpc-registry automated BioContainers addition for bioconductor-coexnet pandoc-citeproc, pandoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cogaps shpc-registry automated BioContainers addition for bioconductor-cogaps 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cogena shpc-registry automated BioContainers addition for bioconductor-cogena
GITHUB quay.io/biocontainers/bioconductor-cogeqc singularity registry hpc automated addition for bioconductor-cogeqc installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-cogito shpc-registry automated BioContainers addition for bioconductor-cogito pandoc
GITHUB quay.io/biocontainers/bioconductor-cogps shpc-registry automated BioContainers addition for bioconductor-cogps
GITHUB quay.io/biocontainers/bioconductor-cohcap shpc-registry automated BioContainers addition for bioconductor-cohcap perl5.32.1, streamzip
GITHUB quay.io/biocontainers/bioconductor-cohcapanno shpc-registry automated BioContainers addition for bioconductor-cohcapanno
GITHUB quay.io/biocontainers/bioconductor-cola shpc-registry automated BioContainers addition for bioconductor-cola
GITHUB quay.io/biocontainers/bioconductor-colonca shpc-registry automated BioContainers addition for bioconductor-colonca
GITHUB quay.io/biocontainers/bioconductor-comapr singularity registry hpc automated addition for bioconductor-comapr installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-combi shpc-registry automated BioContainers addition for bioconductor-combi
GITHUB quay.io/biocontainers/bioconductor-comet shpc-registry automated BioContainers addition for bioconductor-comet
GITHUB quay.io/biocontainers/bioconductor-comethdmr singularity registry hpc automated addition for bioconductor-comethdmr installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-compartmap shpc-registry automated BioContainers addition for bioconductor-compartmap f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-compass shpc-registry automated BioContainers addition for bioconductor-compass pandoc-server, pandoc
GITHUB quay.io/biocontainers/bioconductor-compcoder shpc-registry automated BioContainers addition for bioconductor-compcoder
GITHUB quay.io/biocontainers/bioconductor-compepitools shpc-registry automated BioContainers addition for bioconductor-compepitools
GITHUB quay.io/biocontainers/bioconductor-compgo shpc-registry automated BioContainers addition for bioconductor-compgo jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bioconductor-complexheatmap shpc-registry automated BioContainers addition for bioconductor-complexheatmap x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-compounddb singularity registry hpc automated addition for bioconductor-compounddb installBiocDataPackage.sh, tomlq, xq, yq, rsvg-convert, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-compran shpc-registry automated BioContainers addition for bioconductor-compran
GITHUB quay.io/biocontainers/bioconductor-conclus shpc-registry automated BioContainers addition for bioconductor-conclus
GITHUB quay.io/biocontainers/bioconductor-concordexr singularity registry hpc automated addition for bioconductor-concordexr hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-condcomp shpc-registry automated BioContainers addition for bioconductor-condcomp gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-condiments shpc-registry automated BioContainers addition for bioconductor-condiments
GITHUB quay.io/biocontainers/bioconductor-confess shpc-registry automated BioContainers addition for bioconductor-confess fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/bioconductor-confessdata shpc-registry automated BioContainers addition for bioconductor-confessdata
GITHUB quay.io/biocontainers/bioconductor-connectivitymap shpc-registry automated BioContainers addition for bioconductor-connectivitymap
GITHUB quay.io/biocontainers/bioconductor-consensus shpc-registry automated BioContainers addition for bioconductor-consensus x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-consensusclusterplus shpc-registry automated BioContainers addition for bioconductor-consensusclusterplus
GITHUB quay.io/biocontainers/bioconductor-consensusde shpc-registry automated BioContainers addition for bioconductor-consensusde 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin, c89, c99
GITHUB quay.io/biocontainers/bioconductor-consensusov shpc-registry automated BioContainers addition for bioconductor-consensusov gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-consensusseeker shpc-registry automated BioContainers addition for bioconductor-consensusseeker wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-consica singularity registry hpc automated addition for bioconductor-consica installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-constand shpc-registry automated BioContainers addition for bioconductor-constand
GITHUB quay.io/biocontainers/bioconductor-contibait shpc-registry automated BioContainers addition for bioconductor-contibait wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-conumee shpc-registry automated BioContainers addition for bioconductor-conumee x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-convert shpc-registry automated BioContainers addition for bioconductor-convert
GITHUB quay.io/biocontainers/bioconductor-copa shpc-registry automated BioContainers addition for bioconductor-copa
GITHUB quay.io/biocontainers/bioconductor-copdsexualdimorphism.data shpc-registry automated BioContainers addition for bioconductor-copdsexualdimorphism.data
GITHUB quay.io/biocontainers/bioconductor-copyhelper shpc-registry automated BioContainers addition for bioconductor-copyhelper
GITHUB quay.io/biocontainers/bioconductor-copyneutralima shpc-registry automated BioContainers addition for bioconductor-copyneutralima x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-copynumber shpc-registry automated BioContainers addition for bioconductor-copynumber
GITHUB quay.io/biocontainers/bioconductor-copynumberplots shpc-registry automated BioContainers addition for bioconductor-copynumberplots x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-copywriter shpc-registry automated BioContainers addition for bioconductor-copywriter
GITHUB quay.io/biocontainers/bioconductor-cordon shpc-registry automated BioContainers addition for bioconductor-cordon x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-coregflux shpc-registry automated BioContainers addition for bioconductor-coregflux glpsol, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-coregnet shpc-registry automated BioContainers addition for bioconductor-coregnet glpsol
GITHUB quay.io/biocontainers/bioconductor-coregx shpc-registry automated BioContainers addition for bioconductor-coregx
GITHUB quay.io/biocontainers/bioconductor-cormotif shpc-registry automated BioContainers addition for bioconductor-cormotif
GITHUB quay.io/biocontainers/bioconductor-cormut shpc-registry automated BioContainers addition for bioconductor-cormut 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-corral shpc-registry automated BioContainers addition for bioconductor-corral x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-correp shpc-registry automated BioContainers addition for bioconductor-correp
GITHUB quay.io/biocontainers/bioconductor-coseq shpc-registry automated BioContainers addition for bioconductor-coseq gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cosia singularity registry hpc automated addition for bioconductor-cosia hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1
GITHUB quay.io/biocontainers/bioconductor-cosiadata singularity registry hpc automated addition for bioconductor-cosiadata hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1
GITHUB quay.io/biocontainers/bioconductor-cosmic.67 shpc-registry automated BioContainers addition for bioconductor-cosmic.67
GITHUB quay.io/biocontainers/bioconductor-cosmiq shpc-registry automated BioContainers addition for bioconductor-cosmiq zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-cosmosr shpc-registry automated BioContainers addition for bioconductor-cosmosr pandoc
GITHUB quay.io/biocontainers/bioconductor-cosnet shpc-registry automated BioContainers addition for bioconductor-cosnet
GITHUB quay.io/biocontainers/bioconductor-cotan singularity registry hpc automated addition for bioconductor-cotan
GITHUB quay.io/biocontainers/bioconductor-cottoncdf shpc-registry automated BioContainers addition for bioconductor-cottoncdf
GITHUB quay.io/biocontainers/bioconductor-cottonprobe shpc-registry automated BioContainers addition for bioconductor-cottonprobe
GITHUB quay.io/biocontainers/bioconductor-countclust shpc-registry automated BioContainers addition for bioconductor-countclust
GITHUB quay.io/biocontainers/bioconductor-countsimqc shpc-registry automated BioContainers addition for bioconductor-countsimqc pandoc, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-coveb shpc-registry automated BioContainers addition for bioconductor-coveb gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-coverageview shpc-registry automated BioContainers addition for bioconductor-coverageview
GITHUB quay.io/biocontainers/bioconductor-covrna shpc-registry automated BioContainers addition for bioconductor-covrna c89, c99
GITHUB quay.io/biocontainers/bioconductor-cpvsnp shpc-registry automated BioContainers addition for bioconductor-cpvsnp
GITHUB quay.io/biocontainers/bioconductor-cqn shpc-registry automated BioContainers addition for bioconductor-cqn
GITHUB quay.io/biocontainers/bioconductor-crcl18 shpc-registry automated BioContainers addition for bioconductor-crcl18 x86_64-conda-linux-gnu-gfortran.bin, c89, c99
GITHUB quay.io/biocontainers/bioconductor-crimage shpc-registry automated BioContainers addition for bioconductor-crimage fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/bioconductor-crisprbase singularity registry hpc automated addition for bioconductor-crisprbase installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-crisprbowtie singularity registry hpc automated addition for bioconductor-crisprbowtie installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-crisprbwa singularity registry hpc automated addition for bioconductor-crisprbwa installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-crisprdesign singularity registry hpc automated addition for bioconductor-crisprdesign 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-crisprscore singularity registry hpc automated addition for bioconductor-crisprscore installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-crisprscoredata singularity registry hpc automated addition for bioconductor-crisprscoredata installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-crisprseek shpc-registry automated BioContainers addition for bioconductor-crisprseek
GITHUB quay.io/biocontainers/bioconductor-crisprseekplus shpc-registry automated BioContainers addition for bioconductor-crisprseekplus wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-crisprshiny singularity registry hpc automated addition for bioconductor-crisprshiny pandoc-lua, x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, pandoc-server, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-crisprvariants shpc-registry automated BioContainers addition for bioconductor-crisprvariants wget
GITHUB quay.io/biocontainers/bioconductor-crisprverse singularity registry hpc automated addition for bioconductor-crisprverse 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-crisprviz singularity registry hpc automated addition for bioconductor-crisprviz 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-crlmm shpc-registry automated BioContainers addition for bioconductor-crlmm
GITHUB quay.io/biocontainers/bioconductor-crossicc shpc-registry automated BioContainers addition for bioconductor-crossicc 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-crossmeta shpc-registry automated BioContainers addition for bioconductor-crossmeta xgboost, pandoc-citeproc, pandoc, wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-csar shpc-registry automated BioContainers addition for bioconductor-csar
GITHUB quay.io/biocontainers/bioconductor-csaw shpc-registry automated BioContainers addition for bioconductor-csaw bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-csdr shpc-registry automated BioContainers addition for bioconductor-csdr
GITHUB quay.io/biocontainers/bioconductor-cssp shpc-registry automated BioContainers addition for bioconductor-cssp
GITHUB quay.io/biocontainers/bioconductor-cssq shpc-registry automated BioContainers addition for bioconductor-cssq
GITHUB quay.io/biocontainers/bioconductor-ctc shpc-registry automated BioContainers addition for bioconductor-ctc
GITHUB quay.io/biocontainers/bioconductor-ctcf shpc-registry automated BioContainers addition for bioconductor-ctcf
GITHUB quay.io/biocontainers/bioconductor-ctdata singularity registry hpc automated addition for bioconductor-ctdata hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1
GITHUB quay.io/biocontainers/bioconductor-ctdquerier shpc-registry automated BioContainers addition for bioconductor-ctdquerier
GITHUB quay.io/biocontainers/bioconductor-ctggem shpc-registry automated BioContainers addition for bioconductor-ctggem
GITHUB quay.io/biocontainers/bioconductor-ctrap shpc-registry automated BioContainers addition for bioconductor-ctrap x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-ctsge shpc-registry automated BioContainers addition for bioconductor-ctsge gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ctsv singularity registry hpc automated addition for bioconductor-ctsv x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500
GITHUB quay.io/biocontainers/bioconductor-cummerbund shpc-registry automated BioContainers addition for bioconductor-cummerbund wget
GITHUB quay.io/biocontainers/bioconductor-curatedadipoarray shpc-registry automated BioContainers addition for bioconductor-curatedadipoarray
GITHUB quay.io/biocontainers/bioconductor-curatedadipochip shpc-registry automated BioContainers addition for bioconductor-curatedadipochip x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-curatedadiporna shpc-registry automated BioContainers addition for bioconductor-curatedadiporna x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-curatedatlasqueryr singularity registry hpc automated addition for bioconductor-curatedatlasqueryr pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-curatedbladderdata shpc-registry automated BioContainers addition for bioconductor-curatedbladderdata
GITHUB quay.io/biocontainers/bioconductor-curatedbreastdata shpc-registry automated BioContainers addition for bioconductor-curatedbreastdata pandoc-server, pandoc
GITHUB quay.io/biocontainers/bioconductor-curatedcrcdata shpc-registry automated BioContainers addition for bioconductor-curatedcrcdata
GITHUB quay.io/biocontainers/bioconductor-curatedmetagenomicdata shpc-registry automated BioContainers addition for bioconductor-curatedmetagenomicdata
GITHUB quay.io/biocontainers/bioconductor-curatedovariandata shpc-registry automated BioContainers addition for bioconductor-curatedovariandata
GITHUB quay.io/biocontainers/bioconductor-curatedtbdata shpc-registry automated BioContainers addition for bioconductor-curatedtbdata
GITHUB quay.io/biocontainers/bioconductor-curatedtcgadata shpc-registry automated BioContainers addition for bioconductor-curatedtcgadata gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-customcmpdb shpc-registry automated BioContainers addition for bioconductor-customcmpdb rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders
GITHUB quay.io/biocontainers/bioconductor-customprodb shpc-registry automated BioContainers addition for bioconductor-customprodb
GITHUB quay.io/biocontainers/bioconductor-cve shpc-registry automated BioContainers addition for bioconductor-cve pandoc-citeproc, pandoc, wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cyanofilter shpc-registry automated BioContainers addition for bioconductor-cyanofilter geosop, geos-config
GITHUB quay.io/biocontainers/bioconductor-cycle shpc-registry automated BioContainers addition for bioconductor-cycle
GITHUB quay.io/biocontainers/bioconductor-cydar shpc-registry automated BioContainers addition for bioconductor-cydar gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cyp450cdf shpc-registry automated BioContainers addition for bioconductor-cyp450cdf
GITHUB quay.io/biocontainers/bioconductor-cytodx shpc-registry automated BioContainers addition for bioconductor-cytodx 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, c89, c99
GITHUB quay.io/biocontainers/bioconductor-cytofast shpc-registry automated BioContainers addition for bioconductor-cytofast x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-cytofpower shpc-registry automated BioContainers addition for bioconductor-cytofpower
GITHUB quay.io/biocontainers/bioconductor-cytofqc singularity registry hpc automated addition for bioconductor-cytofqc f2py3.11, hb-info, tjbench, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1
GITHUB quay.io/biocontainers/bioconductor-cytoglmm shpc-registry automated BioContainers addition for bioconductor-cytoglmm
GITHUB quay.io/biocontainers/bioconductor-cytokernel shpc-registry automated BioContainers addition for bioconductor-cytokernel
GITHUB quay.io/biocontainers/bioconductor-cytolib shpc-registry automated BioContainers addition for bioconductor-cytolib
GITHUB quay.io/biocontainers/bioconductor-cytomapper shpc-registry automated BioContainers addition for bioconductor-cytomapper fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/bioconductor-cytomem singularity registry hpc automated addition for bioconductor-cytomem
GITHUB quay.io/biocontainers/bioconductor-cytoml shpc-registry automated BioContainers addition for bioconductor-cytoml
GITHUB quay.io/biocontainers/bioconductor-cytopipeline singularity registry hpc automated addition for bioconductor-cytopipeline hb-info, tjbench, pandoc
GITHUB quay.io/biocontainers/bioconductor-cytopipelinegui singularity registry hpc automated addition for bioconductor-cytopipelinegui pcre2posix_test, hb-info, tjbench, pandoc
GITHUB quay.io/biocontainers/bioconductor-cytotree shpc-registry automated BioContainers addition for bioconductor-cytotree pandoc, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-cytoviewer singularity registry hpc automated addition for bioconductor-cytoviewer elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, protoc-23.3.0, run_x_platform_fuzz_corpus, sozip, elasticurl, elasticurl_cpp, elastipubsub, pg_amcheck, h5delete, bsdcat, bsdcpio, bsdtar, pdfsig, gdal_create, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, sha256_profile, pg_verifybackup, pdfattach, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync
GITHUB quay.io/biocontainers/bioconductor-dada2 shpc-registry automated BioContainers addition for bioconductor-dada2 wget
GITHUB quay.io/biocontainers/bioconductor-daglogo shpc-registry automated BioContainers addition for bioconductor-daglogo
GITHUB quay.io/biocontainers/bioconductor-dama shpc-registry automated BioContainers addition for bioconductor-dama
GITHUB quay.io/biocontainers/bioconductor-damefinder shpc-registry automated BioContainers addition for bioconductor-damefinder
GITHUB quay.io/biocontainers/bioconductor-damirseq shpc-registry automated BioContainers addition for bioconductor-damirseq jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bioconductor-dapar shpc-registry automated BioContainers addition for bioconductor-dapar zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-dapardata shpc-registry automated BioContainers addition for bioconductor-dapardata zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-dart shpc-registry automated BioContainers addition for bioconductor-dart
GITHUB quay.io/biocontainers/bioconductor-dasper shpc-registry automated BioContainers addition for bioconductor-dasper
GITHUB quay.io/biocontainers/bioconductor-davidtiling shpc-registry automated BioContainers addition for bioconductor-davidtiling
GITHUB quay.io/biocontainers/bioconductor-dbchip shpc-registry automated BioContainers addition for bioconductor-dbchip 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-dcanr shpc-registry automated BioContainers addition for bioconductor-dcanr x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-dcats singularity registry hpc automated addition for bioconductor-dcats pcre2posix_test, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-dce shpc-registry automated BioContainers addition for bioconductor-dce pandoc
GITHUB quay.io/biocontainers/bioconductor-dcgsa shpc-registry automated BioContainers addition for bioconductor-dcgsa
GITHUB quay.io/biocontainers/bioconductor-dchiprep shpc-registry automated BioContainers addition for bioconductor-dchiprep wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-ddct shpc-registry automated BioContainers addition for bioconductor-ddct
GITHUB quay.io/biocontainers/bioconductor-ddpcrclust shpc-registry automated BioContainers addition for bioconductor-ddpcrclust geos-config, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-dearseq shpc-registry automated BioContainers addition for bioconductor-dearseq
GITHUB quay.io/biocontainers/bioconductor-debcam shpc-registry automated BioContainers addition for bioconductor-debcam jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bioconductor-debrowser shpc-registry automated BioContainers addition for bioconductor-debrowser
GITHUB quay.io/biocontainers/bioconductor-decipher shpc-registry automated BioContainers addition for bioconductor-decipher
GITHUB quay.io/biocontainers/bioconductor-deco shpc-registry automated BioContainers addition for bioconductor-deco pandoc, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-decomplexdisease shpc-registry automated BioContainers addition for bioconductor-decomplexdisease 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-decomptumor2sig shpc-registry automated BioContainers addition for bioconductor-decomptumor2sig x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-deconrnaseq shpc-registry automated BioContainers addition for bioconductor-deconrnaseq
GITHUB quay.io/biocontainers/bioconductor-decontam shpc-registry automated BioContainers addition for bioconductor-decontam 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-decontx singularity registry hpc automated addition for bioconductor-decontx pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-deconvr shpc-registry automated BioContainers addition for bioconductor-deconvr
GITHUB quay.io/biocontainers/bioconductor-decoupler shpc-registry automated BioContainers addition for bioconductor-decoupler
GITHUB quay.io/biocontainers/bioconductor-deds shpc-registry automated BioContainers addition for bioconductor-deds gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-deepbluer shpc-registry automated BioContainers addition for bioconductor-deepbluer wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-deeppincs shpc-registry automated BioContainers addition for bioconductor-deeppincs jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bioconductor-deepsnv shpc-registry automated BioContainers addition for bioconductor-deepsnv
GITHUB quay.io/biocontainers/bioconductor-deformats shpc-registry automated BioContainers addition for bioconductor-deformats wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-degcre singularity registry hpc automated addition for bioconductor-degcre x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-degnorm shpc-registry automated BioContainers addition for bioconductor-degnorm
GITHUB quay.io/biocontainers/bioconductor-degraph shpc-registry automated BioContainers addition for bioconductor-degraph Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage
GITHUB quay.io/biocontainers/bioconductor-degreport shpc-registry automated BioContainers addition for bioconductor-degreport uconv, tclsh8.5, wish8.5, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-degseq shpc-registry automated BioContainers addition for bioconductor-degseq
GITHUB quay.io/biocontainers/bioconductor-delayedarray shpc-registry automated BioContainers addition for bioconductor-delayedarray c89, c99
GITHUB quay.io/biocontainers/bioconductor-delayeddataframe shpc-registry automated BioContainers addition for bioconductor-delayeddataframe x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-delayedmatrixstats shpc-registry automated BioContainers addition for bioconductor-delayedmatrixstats gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-delayedrandomarray shpc-registry automated BioContainers addition for bioconductor-delayedrandomarray
GITHUB quay.io/biocontainers/bioconductor-delayedtensor shpc-registry automated BioContainers addition for bioconductor-delayedtensor
GITHUB quay.io/biocontainers/bioconductor-delocal singularity registry hpc automated addition for bioconductor-delocal hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-deltacapturec shpc-registry automated BioContainers addition for bioconductor-deltacapturec
GITHUB quay.io/biocontainers/bioconductor-deltagseg shpc-registry automated BioContainers addition for bioconductor-deltagseg
GITHUB quay.io/biocontainers/bioconductor-demand shpc-registry automated BioContainers addition for bioconductor-demand ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-demixt shpc-registry automated BioContainers addition for bioconductor-demixt x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-demuxmix singularity registry hpc automated addition for bioconductor-demuxmix
GITHUB quay.io/biocontainers/bioconductor-demuxsnp singularity registry hpc automated addition for bioconductor-demuxsnp pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete
GITHUB quay.io/biocontainers/bioconductor-densvis shpc-registry automated BioContainers addition for bioconductor-densvis
GITHUB quay.io/biocontainers/bioconductor-dep shpc-registry automated BioContainers addition for bioconductor-dep pandoc-citeproc, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24
GITHUB quay.io/biocontainers/bioconductor-depecher shpc-registry automated BioContainers addition for bioconductor-depecher f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-depinfer singularity registry hpc automated addition for bioconductor-depinfer
GITHUB quay.io/biocontainers/bioconductor-depmap shpc-registry automated BioContainers addition for bioconductor-depmap
GITHUB quay.io/biocontainers/bioconductor-deqms shpc-registry automated BioContainers addition for bioconductor-deqms x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-derfinder shpc-registry automated BioContainers addition for bioconductor-derfinder
GITHUB quay.io/biocontainers/bioconductor-derfinderdata shpc-registry automated BioContainers addition for bioconductor-derfinderdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-derfinderhelper shpc-registry automated BioContainers addition for bioconductor-derfinderhelper
GITHUB quay.io/biocontainers/bioconductor-derfinderplot shpc-registry automated BioContainers addition for bioconductor-derfinderplot
GITHUB quay.io/biocontainers/bioconductor-descan2 shpc-registry automated BioContainers addition for bioconductor-descan2 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-deseq shpc-registry automated BioContainers addition for bioconductor-deseq 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-deseq2 shpc-registry automated BioContainers addition for bioconductor-deseq2
GITHUB quay.io/biocontainers/bioconductor-desingle shpc-registry automated BioContainers addition for bioconductor-desingle 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-desousa2013 shpc-registry automated BioContainers addition for bioconductor-desousa2013
GITHUB quay.io/biocontainers/bioconductor-despace singularity registry hpc automated addition for bioconductor-despace x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, hb-info, f2py3.11, dvipdf, eps2eps, gs, gsbj
GITHUB quay.io/biocontainers/bioconductor-destiny shpc-registry automated BioContainers addition for bioconductor-destiny f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-desubs shpc-registry automated BioContainers addition for bioconductor-desubs idn2, wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-dewseq shpc-registry automated BioContainers addition for bioconductor-dewseq
GITHUB quay.io/biocontainers/bioconductor-dexma shpc-registry automated BioContainers addition for bioconductor-dexma
GITHUB quay.io/biocontainers/bioconductor-dexmadata shpc-registry automated BioContainers addition for bioconductor-dexmadata
GITHUB quay.io/biocontainers/bioconductor-dexseq shpc-registry automated BioContainers addition for bioconductor-dexseq
GITHUB quay.io/biocontainers/bioconductor-dexus shpc-registry automated BioContainers addition for bioconductor-dexus x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-dfp shpc-registry automated BioContainers addition for bioconductor-dfp
GITHUB quay.io/biocontainers/bioconductor-dfplyr singularity registry hpc automated addition for bioconductor-dfplyr x86_64-conda-linux-gnu.cfg, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-dialignr shpc-registry automated BioContainers addition for bioconductor-dialignr zipcmp, zipmerge, ziptool, gif2hdf, glpsol, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8
GITHUB quay.io/biocontainers/bioconductor-diffbind shpc-registry automated BioContainers addition for bioconductor-diffbind
GITHUB quay.io/biocontainers/bioconductor-diffcoexp shpc-registry automated BioContainers addition for bioconductor-diffcoexp 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-diffcyt shpc-registry automated BioContainers addition for bioconductor-diffcyt 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-differentialregulation singularity registry hpc automated addition for bioconductor-differentialregulation installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-diffgeneanalysis shpc-registry automated BioContainers addition for bioconductor-diffgeneanalysis
GITHUB quay.io/biocontainers/bioconductor-diffhic shpc-registry automated BioContainers addition for bioconductor-diffhic
GITHUB quay.io/biocontainers/bioconductor-difflogo shpc-registry automated BioContainers addition for bioconductor-difflogo gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-diffloop shpc-registry automated BioContainers addition for bioconductor-diffloop wget
GITHUB quay.io/biocontainers/bioconductor-diffloopdata shpc-registry automated BioContainers addition for bioconductor-diffloopdata
GITHUB quay.io/biocontainers/bioconductor-diffustats shpc-registry automated BioContainers addition for bioconductor-diffustats 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-diffutr shpc-registry automated BioContainers addition for bioconductor-diffutr
GITHUB quay.io/biocontainers/bioconductor-diggit shpc-registry automated BioContainers addition for bioconductor-diggit
GITHUB quay.io/biocontainers/bioconductor-diggitdata shpc-registry automated BioContainers addition for bioconductor-diggitdata
GITHUB quay.io/biocontainers/bioconductor-dino shpc-registry automated BioContainers addition for bioconductor-dino
GITHUB quay.io/biocontainers/bioconductor-dir.expiry shpc-registry automated BioContainers addition for bioconductor-dir.expiry
GITHUB quay.io/biocontainers/bioconductor-director shpc-registry automated BioContainers addition for bioconductor-director c89, c99
GITHUB quay.io/biocontainers/bioconductor-dirichletmultinomial shpc-registry automated BioContainers addition for bioconductor-dirichletmultinomial
GITHUB quay.io/biocontainers/bioconductor-discordant shpc-registry automated BioContainers addition for bioconductor-discordant gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-discorhythm shpc-registry automated BioContainers addition for bioconductor-discorhythm x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify
GITHUB quay.io/biocontainers/bioconductor-distinct shpc-registry automated BioContainers addition for bioconductor-distinct
GITHUB quay.io/biocontainers/bioconductor-dittoseq shpc-registry automated BioContainers addition for bioconductor-dittoseq
GITHUB quay.io/biocontainers/bioconductor-divergence shpc-registry automated BioContainers addition for bioconductor-divergence x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-dks shpc-registry automated BioContainers addition for bioconductor-dks
GITHUB quay.io/biocontainers/bioconductor-dlbcl shpc-registry automated BioContainers addition for bioconductor-dlbcl
GITHUB quay.io/biocontainers/bioconductor-dmcfb shpc-registry automated BioContainers addition for bioconductor-dmcfb
GITHUB quay.io/biocontainers/bioconductor-dmchmm shpc-registry automated BioContainers addition for bioconductor-dmchmm gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-dmelsgi shpc-registry automated BioContainers addition for bioconductor-dmelsgi glpsol
GITHUB quay.io/biocontainers/bioconductor-dmrcaller shpc-registry automated BioContainers addition for bioconductor-dmrcaller
GITHUB quay.io/biocontainers/bioconductor-dmrcate shpc-registry automated BioContainers addition for bioconductor-dmrcate x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-dmrcatedata shpc-registry automated BioContainers addition for bioconductor-dmrcatedata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-dmrforpairs shpc-registry automated BioContainers addition for bioconductor-dmrforpairs
GITHUB quay.io/biocontainers/bioconductor-dmrscan shpc-registry automated BioContainers addition for bioconductor-dmrscan wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-dmrseq shpc-registry automated BioContainers addition for bioconductor-dmrseq 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-dnabarcodecompatibility shpc-registry automated BioContainers addition for bioconductor-dnabarcodecompatibility x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-dnabarcodes shpc-registry automated BioContainers addition for bioconductor-dnabarcodes ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-dnacopy shpc-registry automated BioContainers addition for bioconductor-dnacopy
GITHUB quay.io/biocontainers/bioconductor-dnafusion singularity registry hpc automated addition for bioconductor-dnafusion installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-dnashaper shpc-registry automated BioContainers addition for bioconductor-dnashaper wget
GITHUB quay.io/biocontainers/bioconductor-dnazoodata singularity registry hpc automated addition for bioconductor-dnazoodata hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-do.db shpc-registry automated BioContainers addition for bioconductor-do.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-dominoeffect shpc-registry automated BioContainers addition for bioconductor-dominoeffect 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-donapllp2013 shpc-registry automated BioContainers addition for bioconductor-donapllp2013 fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/bioconductor-doppelgangr shpc-registry automated BioContainers addition for bioconductor-doppelgangr
GITHUB quay.io/biocontainers/bioconductor-doqtl shpc-registry automated BioContainers addition for bioconductor-doqtl gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-dorothea shpc-registry automated BioContainers addition for bioconductor-dorothea
GITHUB quay.io/biocontainers/bioconductor-doscheda shpc-registry automated BioContainers addition for bioconductor-doscheda gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-dose shpc-registry automated BioContainers addition for bioconductor-dose wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-doser shpc-registry automated BioContainers addition for bioconductor-doser x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-doubletrouble singularity registry hpc automated addition for bioconductor-doubletrouble hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1
GITHUB quay.io/biocontainers/bioconductor-dpeak shpc-registry automated BioContainers addition for bioconductor-dpeak
GITHUB quay.io/biocontainers/bioconductor-drawproteins shpc-registry automated BioContainers addition for bioconductor-drawproteins 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-dream4 shpc-registry automated BioContainers addition for bioconductor-dream4
GITHUB quay.io/biocontainers/bioconductor-dresscheck shpc-registry automated BioContainers addition for bioconductor-dresscheck
GITHUB quay.io/biocontainers/bioconductor-drimseq shpc-registry automated BioContainers addition for bioconductor-drimseq wget
GITHUB quay.io/biocontainers/bioconductor-drivernet shpc-registry automated BioContainers addition for bioconductor-drivernet
GITHUB quay.io/biocontainers/bioconductor-droplettestfiles shpc-registry automated BioContainers addition for bioconductor-droplettestfiles
GITHUB quay.io/biocontainers/bioconductor-dropletutils shpc-registry automated BioContainers addition for bioconductor-dropletutils 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-drosgenome1.db shpc-registry automated BioContainers addition for bioconductor-drosgenome1.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-drosgenome1cdf shpc-registry automated BioContainers addition for bioconductor-drosgenome1cdf
GITHUB quay.io/biocontainers/bioconductor-drosgenome1probe shpc-registry automated BioContainers addition for bioconductor-drosgenome1probe
GITHUB quay.io/biocontainers/bioconductor-drosophila2.db shpc-registry automated BioContainers addition for bioconductor-drosophila2.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-drosophila2cdf shpc-registry automated BioContainers addition for bioconductor-drosophila2cdf
GITHUB quay.io/biocontainers/bioconductor-drosophila2probe shpc-registry automated BioContainers addition for bioconductor-drosophila2probe
GITHUB quay.io/biocontainers/bioconductor-drugtargetinteractions shpc-registry automated BioContainers addition for bioconductor-drugtargetinteractions
GITHUB quay.io/biocontainers/bioconductor-drugvsdisease shpc-registry automated BioContainers addition for bioconductor-drugvsdisease
GITHUB quay.io/biocontainers/bioconductor-drugvsdiseasedata shpc-registry automated BioContainers addition for bioconductor-drugvsdiseasedata
GITHUB quay.io/biocontainers/bioconductor-dsimer shpc-registry automated BioContainers addition for bioconductor-dsimer wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-dsqtl shpc-registry automated BioContainers addition for bioconductor-dsqtl x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-dss shpc-registry automated BioContainers addition for bioconductor-dss
GITHUB quay.io/biocontainers/bioconductor-dstruct shpc-registry automated BioContainers addition for bioconductor-dstruct
GITHUB quay.io/biocontainers/bioconductor-dta shpc-registry automated BioContainers addition for bioconductor-dta
GITHUB quay.io/biocontainers/bioconductor-dualks shpc-registry automated BioContainers addition for bioconductor-dualks
GITHUB quay.io/biocontainers/bioconductor-dune shpc-registry automated BioContainers addition for bioconductor-dune
GITHUB quay.io/biocontainers/bioconductor-duoclustering2018 shpc-registry automated BioContainers addition for bioconductor-duoclustering2018 x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-dupchecker shpc-registry automated BioContainers addition for bioconductor-dupchecker 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-dupradar shpc-registry automated BioContainers addition for bioconductor-dupradar ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-dvddata shpc-registry automated BioContainers addition for bioconductor-dvddata
GITHUB quay.io/biocontainers/bioconductor-dyebias shpc-registry automated BioContainers addition for bioconductor-dyebias
GITHUB quay.io/biocontainers/bioconductor-dyebiasexamples shpc-registry automated BioContainers addition for bioconductor-dyebiasexamples
GITHUB quay.io/biocontainers/bioconductor-dyndoc shpc-registry automated BioContainers addition for bioconductor-dyndoc
GITHUB quay.io/biocontainers/bioconductor-easier shpc-registry automated BioContainers addition for bioconductor-easier
GITHUB quay.io/biocontainers/bioconductor-easierdata shpc-registry automated BioContainers addition for bioconductor-easierdata
GITHUB quay.io/biocontainers/bioconductor-easycelltype singularity registry hpc automated addition for bioconductor-easycelltype installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-easylift singularity registry hpc automated addition for bioconductor-easylift pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete
GITHUB quay.io/biocontainers/bioconductor-easyqpcr shpc-registry automated BioContainers addition for bioconductor-easyqpcr gtk-builder-convert, gtk-demo, gtk-query-immodules-2.0, gtk-update-icon-cache, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-easyreporting shpc-registry automated BioContainers addition for bioconductor-easyreporting pandoc
GITHUB quay.io/biocontainers/bioconductor-easyrnaseq shpc-registry automated BioContainers addition for bioconductor-easyrnaseq
GITHUB quay.io/biocontainers/bioconductor-eatonetalchipseq shpc-registry automated BioContainers addition for bioconductor-eatonetalchipseq
GITHUB quay.io/biocontainers/bioconductor-ebarrays shpc-registry automated BioContainers addition for bioconductor-ebarrays
GITHUB quay.io/biocontainers/bioconductor-ebcoexpress shpc-registry automated BioContainers addition for bioconductor-ebcoexpress
GITHUB quay.io/biocontainers/bioconductor-ebimage shpc-registry automated BioContainers addition for bioconductor-ebimage fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/bioconductor-ebsea shpc-registry automated BioContainers addition for bioconductor-ebsea
GITHUB quay.io/biocontainers/bioconductor-ebseq shpc-registry automated BioContainers addition for bioconductor-ebseq
GITHUB quay.io/biocontainers/bioconductor-ebseqhmm shpc-registry automated BioContainers addition for bioconductor-ebseqhmm
GITHUB quay.io/biocontainers/bioconductor-ecoli2.db shpc-registry automated BioContainers addition for bioconductor-ecoli2.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-ecoli2cdf shpc-registry automated BioContainers addition for bioconductor-ecoli2cdf
GITHUB quay.io/biocontainers/bioconductor-ecoli2probe shpc-registry automated BioContainers addition for bioconductor-ecoli2probe
GITHUB quay.io/biocontainers/bioconductor-ecoliasv2cdf shpc-registry automated BioContainers addition for bioconductor-ecoliasv2cdf
GITHUB quay.io/biocontainers/bioconductor-ecoliasv2probe shpc-registry automated BioContainers addition for bioconductor-ecoliasv2probe
GITHUB quay.io/biocontainers/bioconductor-ecolicdf shpc-registry automated BioContainers addition for bioconductor-ecolicdf
GITHUB quay.io/biocontainers/bioconductor-ecolik12.db0 shpc-registry automated BioContainers addition for bioconductor-ecolik12.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ecolileucine shpc-registry automated BioContainers addition for bioconductor-ecolileucine
GITHUB quay.io/biocontainers/bioconductor-ecoliprobe shpc-registry automated BioContainers addition for bioconductor-ecoliprobe
GITHUB quay.io/biocontainers/bioconductor-ecolisakai.db0 shpc-registry automated BioContainers addition for bioconductor-ecolisakai.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ecolitk shpc-registry automated BioContainers addition for bioconductor-ecolitk
GITHUB quay.io/biocontainers/bioconductor-edaseq shpc-registry automated BioContainers addition for bioconductor-edaseq bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-edda shpc-registry automated BioContainers addition for bioconductor-edda 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-edge shpc-registry automated BioContainers addition for bioconductor-edge f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-edger shpc-registry automated BioContainers addition for bioconductor-edger
GITHUB quay.io/biocontainers/bioconductor-edirquery singularity registry hpc automated addition for bioconductor-edirquery hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-eds singularity registry hpc automated addition for bioconductor-eds
GITHUB quay.io/biocontainers/bioconductor-eegc shpc-registry automated BioContainers addition for bioconductor-eegc udunits2, wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-egad shpc-registry automated BioContainers addition for bioconductor-egad
GITHUB quay.io/biocontainers/bioconductor-egsea shpc-registry automated BioContainers addition for bioconductor-egsea wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-egseadata shpc-registry automated BioContainers addition for bioconductor-egseadata wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-eir shpc-registry automated BioContainers addition for bioconductor-eir rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders
GITHUB quay.io/biocontainers/bioconductor-eisa shpc-registry automated BioContainers addition for bioconductor-eisa x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-eisar shpc-registry automated BioContainers addition for bioconductor-eisar
GITHUB quay.io/biocontainers/bioconductor-elbow shpc-registry automated BioContainers addition for bioconductor-elbow x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-elmer.data shpc-registry automated BioContainers addition for bioconductor-elmer.data gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-elmer shpc-registry automated BioContainers addition for bioconductor-elmer pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-emdomics shpc-registry automated BioContainers addition for bioconductor-emdomics
GITHUB quay.io/biocontainers/bioconductor-empiricalbrownsmethod shpc-registry automated BioContainers addition for bioconductor-empiricalbrownsmethod ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-emtdata shpc-registry automated BioContainers addition for bioconductor-emtdata
GITHUB quay.io/biocontainers/bioconductor-encodexplorer shpc-registry automated BioContainers addition for bioconductor-encodexplorer c89, c99
GITHUB quay.io/biocontainers/bioconductor-encodexplorerdata shpc-registry automated BioContainers addition for bioconductor-encodexplorerdata
GITHUB quay.io/biocontainers/bioconductor-enhancedvolcano shpc-registry automated BioContainers addition for bioconductor-enhancedvolcano projsync, invgeod, invproj, projinfo, cct, gie, cs2cs, geod, proj, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-enhancerhomologsearch shpc-registry automated BioContainers addition for bioconductor-enhancerhomologsearch
GITHUB quay.io/biocontainers/bioconductor-enmcb shpc-registry automated BioContainers addition for bioconductor-enmcb
GITHUB quay.io/biocontainers/bioconductor-enmix shpc-registry automated BioContainers addition for bioconductor-enmix
GITHUB quay.io/biocontainers/bioconductor-enrichedheatmap shpc-registry automated BioContainers addition for bioconductor-enrichedheatmap
GITHUB quay.io/biocontainers/bioconductor-enrichmentbrowser shpc-registry automated BioContainers addition for bioconductor-enrichmentbrowser
GITHUB quay.io/biocontainers/bioconductor-enrichplot shpc-registry automated BioContainers addition for bioconductor-enrichplot 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-enrichtf shpc-registry automated BioContainers addition for bioconductor-enrichtf pandoc, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-enrichviewnet singularity registry hpc automated addition for bioconductor-enrichviewnet Cytoscape, cytoscape.sh, gen_vmoptions.sh, pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, curve_keygen, jpackage, hb-info, cups-config, ippeveprinter, ipptool, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script
GITHUB quay.io/biocontainers/bioconductor-ensdb.hsapiens.v75 shpc-registry automated BioContainers addition for bioconductor-ensdb.hsapiens.v75 x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-ensdb.hsapiens.v79 shpc-registry automated BioContainers addition for bioconductor-ensdb.hsapiens.v79
GITHUB quay.io/biocontainers/bioconductor-ensdb.hsapiens.v86 shpc-registry automated BioContainers addition for bioconductor-ensdb.hsapiens.v86
GITHUB quay.io/biocontainers/bioconductor-ensdb.mmusculus.v75 shpc-registry automated BioContainers addition for bioconductor-ensdb.mmusculus.v75
GITHUB quay.io/biocontainers/bioconductor-ensdb.mmusculus.v79 shpc-registry automated BioContainers addition for bioconductor-ensdb.mmusculus.v79
GITHUB quay.io/biocontainers/bioconductor-ensdb.rnorvegicus.v75 shpc-registry automated BioContainers addition for bioconductor-ensdb.rnorvegicus.v75
GITHUB quay.io/biocontainers/bioconductor-ensdb.rnorvegicus.v79 shpc-registry automated BioContainers addition for bioconductor-ensdb.rnorvegicus.v79
GITHUB quay.io/biocontainers/bioconductor-ensembldb shpc-registry automated BioContainers addition for bioconductor-ensembldb gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ensemblvep shpc-registry automated BioContainers addition for bioconductor-ensemblvep
GITHUB quay.io/biocontainers/bioconductor-envisionquery shpc-registry automated BioContainers addition for bioconductor-envisionquery jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bioconductor-epialleler shpc-registry automated BioContainers addition for bioconductor-epialleler
GITHUB quay.io/biocontainers/bioconductor-epicompare singularity registry hpc automated addition for bioconductor-epicompare installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, pandoc, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-epidecoder shpc-registry automated BioContainers addition for bioconductor-epidecoder
GITHUB quay.io/biocontainers/bioconductor-epidish shpc-registry automated BioContainers addition for bioconductor-epidish x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-epigenomix shpc-registry automated BioContainers addition for bioconductor-epigenomix
GITHUB quay.io/biocontainers/bioconductor-epigrahmm shpc-registry automated BioContainers addition for bioconductor-epigrahmm f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-epihet shpc-registry automated BioContainers addition for bioconductor-epihet x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-epimix.data singularity registry hpc automated addition for bioconductor-epimix.data installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-epimutacionsdata singularity registry hpc automated addition for bioconductor-epimutacionsdata installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-epinem shpc-registry automated BioContainers addition for bioconductor-epinem
GITHUB quay.io/biocontainers/bioconductor-epistack shpc-registry automated BioContainers addition for bioconductor-epistack
GITHUB quay.io/biocontainers/bioconductor-epistasisga singularity registry hpc automated addition for bioconductor-epistasisga glpsol
GITHUB quay.io/biocontainers/bioconductor-epitxdb.hs.hg38 shpc-registry automated BioContainers addition for bioconductor-epitxdb.hs.hg38
GITHUB quay.io/biocontainers/bioconductor-epitxdb shpc-registry automated BioContainers addition for bioconductor-epitxdb
GITHUB quay.io/biocontainers/bioconductor-epitxdb.mm.mm10 shpc-registry automated BioContainers addition for bioconductor-epitxdb.mm.mm10
GITHUB quay.io/biocontainers/bioconductor-epitxdb.sc.saccer3 shpc-registry automated BioContainers addition for bioconductor-epitxdb.sc.saccer3
GITHUB quay.io/biocontainers/bioconductor-epivizr shpc-registry automated BioContainers addition for bioconductor-epivizr wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-epivizrchart shpc-registry automated BioContainers addition for bioconductor-epivizrchart gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-epivizrdata shpc-registry automated BioContainers addition for bioconductor-epivizrdata wget
GITHUB quay.io/biocontainers/bioconductor-epivizrserver shpc-registry automated BioContainers addition for bioconductor-epivizrserver ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-epivizrstandalone shpc-registry automated BioContainers addition for bioconductor-epivizrstandalone wget
GITHUB quay.io/biocontainers/bioconductor-erccdashboard shpc-registry automated BioContainers addition for bioconductor-erccdashboard
GITHUB quay.io/biocontainers/bioconductor-erma shpc-registry automated BioContainers addition for bioconductor-erma x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-erssa shpc-registry automated BioContainers addition for bioconductor-erssa x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-esatac shpc-registry automated BioContainers addition for bioconductor-esatac pandoc-citeproc, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj
GITHUB quay.io/biocontainers/bioconductor-escape shpc-registry automated BioContainers addition for bioconductor-escape
GITHUB quay.io/biocontainers/bioconductor-escher singularity registry hpc automated addition for bioconductor-escher git2, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, hb-info, dvipdf, eps2eps, gs, gsbj, gsdj
GITHUB quay.io/biocontainers/bioconductor-esetvis shpc-registry automated BioContainers addition for bioconductor-esetvis c89, c99
GITHUB quay.io/biocontainers/bioconductor-estrogen shpc-registry automated BioContainers addition for bioconductor-estrogen
GITHUB quay.io/biocontainers/bioconductor-etec16s shpc-registry automated BioContainers addition for bioconductor-etec16s
GITHUB quay.io/biocontainers/bioconductor-eudysbiome shpc-registry automated BioContainers addition for bioconductor-eudysbiome wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-eupathdb shpc-registry automated BioContainers addition for bioconductor-eupathdb
GITHUB quay.io/biocontainers/bioconductor-evaluomer shpc-registry automated BioContainers addition for bioconductor-evaluomer pandoc, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-eventpointer shpc-registry automated BioContainers addition for bioconductor-eventpointer glpsol
GITHUB quay.io/biocontainers/bioconductor-ewce shpc-registry automated BioContainers addition for bioconductor-ewce
GITHUB quay.io/biocontainers/bioconductor-ewcedata shpc-registry automated BioContainers addition for bioconductor-ewcedata
GITHUB quay.io/biocontainers/bioconductor-excluderanges shpc-registry automated BioContainers addition for bioconductor-excluderanges
GITHUB quay.io/biocontainers/bioconductor-excluster shpc-registry automated BioContainers addition for bioconductor-excluster x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-eximir shpc-registry automated BioContainers addition for bioconductor-eximir
GITHUB quay.io/biocontainers/bioconductor-exomecopy shpc-registry automated BioContainers addition for bioconductor-exomecopy
GITHUB quay.io/biocontainers/bioconductor-exomepeak shpc-registry automated BioContainers addition for bioconductor-exomepeak gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-exomepeak2 shpc-registry automated BioContainers addition for bioconductor-exomepeak2
GITHUB quay.io/biocontainers/bioconductor-experimenthub shpc-registry automated BioContainers addition for bioconductor-experimenthub
GITHUB quay.io/biocontainers/bioconductor-experimenthubdata shpc-registry automated BioContainers addition for bioconductor-experimenthubdata wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-experimentsubset shpc-registry automated BioContainers addition for bioconductor-experimentsubset x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify
GITHUB quay.io/biocontainers/bioconductor-explorase shpc-registry automated BioContainers addition for bioconductor-explorase ggobi, gtk-builder-convert, gtk-demo, gtk-query-immodules-2.0, gtk-update-icon-cache, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-exploremodelmatrix shpc-registry automated BioContainers addition for bioconductor-exploremodelmatrix
GITHUB quay.io/biocontainers/bioconductor-expressionatlas shpc-registry automated BioContainers addition for bioconductor-expressionatlas
GITHUB quay.io/biocontainers/bioconductor-expressionnormalizationworkflow shpc-registry automated BioContainers addition for bioconductor-expressionnormalizationworkflow x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-expressionview shpc-registry automated BioContainers addition for bioconductor-expressionview x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-extrachips singularity registry hpc automated addition for bioconductor-extrachips installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-faahko shpc-registry automated BioContainers addition for bioconductor-faahko zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-fabia shpc-registry automated BioContainers addition for bioconductor-fabia
GITHUB quay.io/biocontainers/bioconductor-fabiadata shpc-registry automated BioContainers addition for bioconductor-fabiadata
GITHUB quay.io/biocontainers/bioconductor-facopy.annot shpc-registry automated BioContainers addition for bioconductor-facopy.annot gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-facsdorit shpc-registry automated BioContainers addition for bioconductor-facsdorit 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-factdesign shpc-registry automated BioContainers addition for bioconductor-factdesign
GITHUB quay.io/biocontainers/bioconductor-factr singularity registry hpc automated addition for bioconductor-factr installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-famagg shpc-registry automated BioContainers addition for bioconductor-famagg
GITHUB quay.io/biocontainers/bioconductor-famat shpc-registry automated BioContainers addition for bioconductor-famat
GITHUB quay.io/biocontainers/bioconductor-fantom3and4cage shpc-registry automated BioContainers addition for bioconductor-fantom3and4cage
GITHUB quay.io/biocontainers/bioconductor-farms shpc-registry automated BioContainers addition for bioconductor-farms
GITHUB quay.io/biocontainers/bioconductor-fastliquidassociation shpc-registry automated BioContainers addition for bioconductor-fastliquidassociation
GITHUB quay.io/biocontainers/bioconductor-fastqcleaner shpc-registry automated BioContainers addition for bioconductor-fastqcleaner x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-fastreer singularity registry hpc automated addition for bioconductor-fastreer jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap, jps
GITHUB quay.io/biocontainers/bioconductor-fastseg shpc-registry automated BioContainers addition for bioconductor-fastseg
GITHUB quay.io/biocontainers/bioconductor-fcbf shpc-registry automated BioContainers addition for bioconductor-fcbf
GITHUB quay.io/biocontainers/bioconductor-fccac shpc-registry automated BioContainers addition for bioconductor-fccac wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-fci shpc-registry automated BioContainers addition for bioconductor-fci
GITHUB quay.io/biocontainers/bioconductor-fcoex shpc-registry automated BioContainers addition for bioconductor-fcoex x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-fcscan shpc-registry automated BioContainers addition for bioconductor-fcscan
GITHUB quay.io/biocontainers/bioconductor-fdb.fantom4.promoters.hg19 shpc-registry automated BioContainers addition for bioconductor-fdb.fantom4.promoters.hg19
GITHUB quay.io/biocontainers/bioconductor-fdb.infiniummethylation.hg18 shpc-registry automated BioContainers addition for bioconductor-fdb.infiniummethylation.hg18
GITHUB quay.io/biocontainers/bioconductor-fdb.infiniummethylation.hg19 shpc-registry automated BioContainers addition for bioconductor-fdb.infiniummethylation.hg19 x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-fdb.ucsc.snp135common.hg19 shpc-registry automated BioContainers addition for bioconductor-fdb.ucsc.snp135common.hg19
GITHUB quay.io/biocontainers/bioconductor-fdb.ucsc.snp137common.hg19 shpc-registry automated BioContainers addition for bioconductor-fdb.ucsc.snp137common.hg19
GITHUB quay.io/biocontainers/bioconductor-fdb.ucsc.trnas shpc-registry automated BioContainers addition for bioconductor-fdb.ucsc.trnas
GITHUB quay.io/biocontainers/bioconductor-fdrame shpc-registry automated BioContainers addition for bioconductor-fdrame
GITHUB quay.io/biocontainers/bioconductor-feast shpc-registry automated BioContainers addition for bioconductor-feast glpsol
GITHUB quay.io/biocontainers/bioconductor-featseekr singularity registry hpc automated addition for bioconductor-featseekr hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-fedup shpc-registry automated BioContainers addition for bioconductor-fedup Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage
GITHUB quay.io/biocontainers/bioconductor-fella shpc-registry automated BioContainers addition for bioconductor-fella 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-fem shpc-registry automated BioContainers addition for bioconductor-fem 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-fenr singularity registry hpc automated addition for bioconductor-fenr pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete
GITHUB quay.io/biocontainers/bioconductor-ffpe shpc-registry automated BioContainers addition for bioconductor-ffpe
GITHUB quay.io/biocontainers/bioconductor-ffpeexampledata shpc-registry automated BioContainers addition for bioconductor-ffpeexampledata
GITHUB quay.io/biocontainers/bioconductor-fgga shpc-registry automated BioContainers addition for bioconductor-fgga
GITHUB quay.io/biocontainers/bioconductor-fgnet shpc-registry automated BioContainers addition for bioconductor-fgnet
GITHUB quay.io/biocontainers/bioconductor-fgsea shpc-registry automated BioContainers addition for bioconductor-fgsea c89, c99
GITHUB quay.io/biocontainers/bioconductor-fibroeset shpc-registry automated BioContainers addition for bioconductor-fibroeset
GITHUB quay.io/biocontainers/bioconductor-fieldeffectcrc shpc-registry automated BioContainers addition for bioconductor-fieldeffectcrc pandoc-server, pandoc
GITHUB quay.io/biocontainers/bioconductor-filterffpe shpc-registry automated BioContainers addition for bioconductor-filterffpe
GITHUB quay.io/biocontainers/bioconductor-findit2 singularity registry hpc automated addition for bioconductor-findit2 installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-findmyfriends shpc-registry automated BioContainers addition for bioconductor-findmyfriends ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-fis shpc-registry automated BioContainers addition for bioconductor-fis wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-fishalyser shpc-registry automated BioContainers addition for bioconductor-fishalyser fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/bioconductor-fishpond shpc-registry automated BioContainers addition for bioconductor-fishpond
GITHUB quay.io/biocontainers/bioconductor-fission shpc-registry automated BioContainers addition for bioconductor-fission 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-fitcons.ucsc.hg19 shpc-registry automated BioContainers addition for bioconductor-fitcons.ucsc.hg19
GITHUB quay.io/biocontainers/bioconductor-fithic shpc-registry automated BioContainers addition for bioconductor-fithic c89, c99
GITHUB quay.io/biocontainers/bioconductor-flagme shpc-registry automated BioContainers addition for bioconductor-flagme zipcmp, zipmerge, ziptool, gif2hdf, glpsol, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8
GITHUB quay.io/biocontainers/bioconductor-flames shpc-registry automated BioContainers addition for bioconductor-flames
GITHUB quay.io/biocontainers/bioconductor-fletcher2013a shpc-registry automated BioContainers addition for bioconductor-fletcher2013a
GITHUB quay.io/biocontainers/bioconductor-fletcher2013b shpc-registry automated BioContainers addition for bioconductor-fletcher2013b glpsol, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-flipflop shpc-registry automated BioContainers addition for bioconductor-flipflop wget
GITHUB quay.io/biocontainers/bioconductor-flowai shpc-registry automated BioContainers addition for bioconductor-flowai tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-flowbeads shpc-registry automated BioContainers addition for bioconductor-flowbeads
GITHUB quay.io/biocontainers/bioconductor-flowbin shpc-registry automated BioContainers addition for bioconductor-flowbin
GITHUB quay.io/biocontainers/bioconductor-flowcatchr shpc-registry automated BioContainers addition for bioconductor-flowcatchr x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify
GITHUB quay.io/biocontainers/bioconductor-flowchic shpc-registry automated BioContainers addition for bioconductor-flowchic fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/bioconductor-flowcl shpc-registry automated BioContainers addition for bioconductor-flowcl
GITHUB quay.io/biocontainers/bioconductor-flowclean shpc-registry automated BioContainers addition for bioconductor-flowclean
GITHUB quay.io/biocontainers/bioconductor-flowclust shpc-registry automated BioContainers addition for bioconductor-flowclust
GITHUB quay.io/biocontainers/bioconductor-flowcore shpc-registry automated BioContainers addition for bioconductor-flowcore
GITHUB quay.io/biocontainers/bioconductor-flowcut shpc-registry automated BioContainers addition for bioconductor-flowcut geosop, geos-config
GITHUB quay.io/biocontainers/bioconductor-flowcybar shpc-registry automated BioContainers addition for bioconductor-flowcybar
GITHUB quay.io/biocontainers/bioconductor-flowdensity shpc-registry automated BioContainers addition for bioconductor-flowdensity uconv, tclsh8.5, wish8.5, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-flowfit shpc-registry automated BioContainers addition for bioconductor-flowfit mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, mpifort, mpic++, mpicc
GITHUB quay.io/biocontainers/bioconductor-flowfitexampledata shpc-registry automated BioContainers addition for bioconductor-flowfitexampledata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-flowfp shpc-registry automated BioContainers addition for bioconductor-flowfp
GITHUB quay.io/biocontainers/bioconductor-flowgate singularity registry hpc automated addition for bioconductor-flowgate hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-flowgraph shpc-registry automated BioContainers addition for bioconductor-flowgraph
GITHUB quay.io/biocontainers/bioconductor-flowmap shpc-registry automated BioContainers addition for bioconductor-flowmap
GITHUB quay.io/biocontainers/bioconductor-flowmatch shpc-registry automated BioContainers addition for bioconductor-flowmatch
GITHUB quay.io/biocontainers/bioconductor-flowmeans shpc-registry automated BioContainers addition for bioconductor-flowmeans
GITHUB quay.io/biocontainers/bioconductor-flowmerge shpc-registry automated BioContainers addition for bioconductor-flowmerge x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-flowpeaks shpc-registry automated BioContainers addition for bioconductor-flowpeaks
GITHUB quay.io/biocontainers/bioconductor-flowploidy shpc-registry automated BioContainers addition for bioconductor-flowploidy pandoc-citeproc, pandoc, c89, c99
GITHUB quay.io/biocontainers/bioconductor-flowploidydata shpc-registry automated BioContainers addition for bioconductor-flowploidydata wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-flowplots shpc-registry automated BioContainers addition for bioconductor-flowplots
GITHUB quay.io/biocontainers/bioconductor-flowq shpc-registry automated BioContainers addition for bioconductor-flowq -pkg-config, croco-0.6-config, csslint-0.6, x86_64-unknown-linux-gnu-pkg-config, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, gifecho, gifinto, Magick++-config, MagickCore-config, MagickWand-config
GITHUB quay.io/biocontainers/bioconductor-flowqb shpc-registry automated BioContainers addition for bioconductor-flowqb gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-flowqbdata shpc-registry automated BioContainers addition for bioconductor-flowqbdata wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-flowrepositoryr shpc-registry automated BioContainers addition for bioconductor-flowrepositoryr tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-flowsom shpc-registry automated BioContainers addition for bioconductor-flowsom glpsol, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-flowsorted.blood.450k shpc-registry automated BioContainers addition for bioconductor-flowsorted.blood.450k
GITHUB quay.io/biocontainers/bioconductor-flowsorted.blood.epic shpc-registry automated BioContainers addition for bioconductor-flowsorted.blood.epic x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-flowsorted.cordblood.450k shpc-registry automated BioContainers addition for bioconductor-flowsorted.cordblood.450k
GITHUB quay.io/biocontainers/bioconductor-flowsorted.cordbloodcombined.450k shpc-registry automated BioContainers addition for bioconductor-flowsorted.cordbloodcombined.450k x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-flowsorted.cordbloodnorway.450k shpc-registry automated BioContainers addition for bioconductor-flowsorted.cordbloodnorway.450k wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-flowsorted.dlpfc.450k shpc-registry automated BioContainers addition for bioconductor-flowsorted.dlpfc.450k
GITHUB quay.io/biocontainers/bioconductor-flowspecs shpc-registry automated BioContainers addition for bioconductor-flowspecs
GITHUB quay.io/biocontainers/bioconductor-flowspy shpc-registry automated BioContainers addition for bioconductor-flowspy pandoc, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-flowstats shpc-registry automated BioContainers addition for bioconductor-flowstats
GITHUB quay.io/biocontainers/bioconductor-flowtime shpc-registry automated BioContainers addition for bioconductor-flowtime gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-flowtrans shpc-registry automated BioContainers addition for bioconductor-flowtrans
GITHUB quay.io/biocontainers/bioconductor-flowtype shpc-registry automated BioContainers addition for bioconductor-flowtype
GITHUB quay.io/biocontainers/bioconductor-flowutils shpc-registry automated BioContainers addition for bioconductor-flowutils
GITHUB quay.io/biocontainers/bioconductor-flowviz shpc-registry automated BioContainers addition for bioconductor-flowviz
GITHUB quay.io/biocontainers/bioconductor-flowvs shpc-registry automated BioContainers addition for bioconductor-flowvs
GITHUB quay.io/biocontainers/bioconductor-flowworkspace shpc-registry automated BioContainers addition for bioconductor-flowworkspace
GITHUB quay.io/biocontainers/bioconductor-flowworkspacedata shpc-registry automated BioContainers addition for bioconductor-flowworkspacedata
GITHUB quay.io/biocontainers/bioconductor-fly.db0 shpc-registry automated BioContainers addition for bioconductor-fly.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-fmcsr shpc-registry automated BioContainers addition for bioconductor-fmcsr rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders
GITHUB quay.io/biocontainers/bioconductor-fmrs shpc-registry automated BioContainers addition for bioconductor-fmrs
GITHUB quay.io/biocontainers/bioconductor-fobitools shpc-registry automated BioContainers addition for bioconductor-fobitools
GITHUB quay.io/biocontainers/bioconductor-focalcall shpc-registry automated BioContainers addition for bioconductor-focalcall 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-foldgo shpc-registry automated BioContainers addition for bioconductor-foldgo x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-fourcseq shpc-registry automated BioContainers addition for bioconductor-fourcseq bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-fourdndata singularity registry hpc automated addition for bioconductor-fourdndata hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-fraser shpc-registry automated BioContainers addition for bioconductor-fraser
GITHUB quay.io/biocontainers/bioconductor-frenchfish shpc-registry automated BioContainers addition for bioconductor-frenchfish
GITHUB quay.io/biocontainers/bioconductor-frgepistasis shpc-registry automated BioContainers addition for bioconductor-frgepistasis
GITHUB quay.io/biocontainers/bioconductor-frma shpc-registry automated BioContainers addition for bioconductor-frma
GITHUB quay.io/biocontainers/bioconductor-frmaexampledata shpc-registry automated BioContainers addition for bioconductor-frmaexampledata
GITHUB quay.io/biocontainers/bioconductor-frmatools shpc-registry automated BioContainers addition for bioconductor-frmatools
GITHUB quay.io/biocontainers/bioconductor-fscanr shpc-registry automated BioContainers addition for bioconductor-fscanr
GITHUB quay.io/biocontainers/bioconductor-funchip shpc-registry automated BioContainers addition for bioconductor-funchip wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-funcisnp.data shpc-registry automated BioContainers addition for bioconductor-funcisnp.data gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-funcisnp shpc-registry automated BioContainers addition for bioconductor-funcisnp 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-funtoonorm shpc-registry automated BioContainers addition for bioconductor-funtoonorm gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-furrowseg shpc-registry automated BioContainers addition for bioconductor-furrowseg fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/bioconductor-fusesom singularity registry hpc automated addition for bioconductor-fusesom installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-ga4ghclient shpc-registry automated BioContainers addition for bioconductor-ga4ghclient gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ga4ghshiny shpc-registry automated BioContainers addition for bioconductor-ga4ghshiny gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-gaga shpc-registry automated BioContainers addition for bioconductor-gaga
GITHUB quay.io/biocontainers/bioconductor-gage shpc-registry automated BioContainers addition for bioconductor-gage
GITHUB quay.io/biocontainers/bioconductor-gagedata shpc-registry automated BioContainers addition for bioconductor-gagedata tclsh8.5, wish8.5, ncurses5-config
GITHUB quay.io/biocontainers/bioconductor-gaggle shpc-registry automated BioContainers addition for bioconductor-gaggle jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bioconductor-gaia shpc-registry automated BioContainers addition for bioconductor-gaia
GITHUB quay.io/biocontainers/bioconductor-gapgom shpc-registry automated BioContainers addition for bioconductor-gapgom x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-gaprediction shpc-registry automated BioContainers addition for bioconductor-gaprediction c89, c99
GITHUB quay.io/biocontainers/bioconductor-garfield shpc-registry automated BioContainers addition for bioconductor-garfield
GITHUB quay.io/biocontainers/bioconductor-gars shpc-registry automated BioContainers addition for bioconductor-gars extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/bioconductor-gaschyhs shpc-registry automated BioContainers addition for bioconductor-gaschyhs
GITHUB quay.io/biocontainers/bioconductor-gatefinder shpc-registry automated BioContainers addition for bioconductor-gatefinder 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, c89, c99
GITHUB quay.io/biocontainers/bioconductor-gatingmldata shpc-registry automated BioContainers addition for bioconductor-gatingmldata
GITHUB quay.io/biocontainers/bioconductor-gatom singularity registry hpc automated addition for bioconductor-gatom pandoc-lua, x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, pandoc-server, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-gbscleanr singularity registry hpc automated addition for bioconductor-gbscleanr hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-gcapc shpc-registry automated BioContainers addition for bioconductor-gcapc gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-gcatest shpc-registry automated BioContainers addition for bioconductor-gcatest ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-gcmap shpc-registry automated BioContainers addition for bioconductor-gcmap 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-gcmapweb shpc-registry automated BioContainers addition for bioconductor-gcmapweb 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-gcrisprtools shpc-registry automated BioContainers addition for bioconductor-gcrisprtools pandoc
GITHUB quay.io/biocontainers/bioconductor-gcrma shpc-registry automated BioContainers addition for bioconductor-gcrma
GITHUB quay.io/biocontainers/bioconductor-gcsconnection shpc-registry automated BioContainers addition for bioconductor-gcsconnection
GITHUB quay.io/biocontainers/bioconductor-gcsfilesystem shpc-registry automated BioContainers addition for bioconductor-gcsfilesystem
GITHUB quay.io/biocontainers/bioconductor-gcspikelite shpc-registry automated BioContainers addition for bioconductor-gcspikelite
GITHUB quay.io/biocontainers/bioconductor-gcsscore shpc-registry automated BioContainers addition for bioconductor-gcsscore
GITHUB quay.io/biocontainers/bioconductor-gdcrnatools shpc-registry automated BioContainers addition for bioconductor-gdcrnatools 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-gdnainrnaseqdata singularity registry hpc automated addition for bioconductor-gdnainrnaseqdata hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1
GITHUB quay.io/biocontainers/bioconductor-gdnax singularity registry hpc automated addition for bioconductor-gdnax pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-gdrcore singularity registry hpc automated addition for bioconductor-gdrcore protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin
GITHUB quay.io/biocontainers/bioconductor-gdrimport singularity registry hpc automated addition for bioconductor-gdrimport protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin
GITHUB quay.io/biocontainers/bioconductor-gdrstyle singularity registry hpc automated addition for bioconductor-gdrstyle git2, pcre2posix_test, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-gdrtestdata singularity registry hpc automated addition for bioconductor-gdrtestdata pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete
GITHUB quay.io/biocontainers/bioconductor-gdrutils singularity registry hpc automated addition for bioconductor-gdrutils protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin
GITHUB quay.io/biocontainers/bioconductor-gdsarray shpc-registry automated BioContainers addition for bioconductor-gdsarray 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-gdsfmt shpc-registry automated BioContainers addition for bioconductor-gdsfmt
GITHUB quay.io/biocontainers/bioconductor-geecc shpc-registry automated BioContainers addition for bioconductor-geecc 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-gem shpc-registry automated BioContainers addition for bioconductor-gem c89, c99
GITHUB quay.io/biocontainers/bioconductor-gemini shpc-registry automated BioContainers addition for bioconductor-gemini
GITHUB quay.io/biocontainers/bioconductor-gemma.r singularity registry hpc automated addition for bioconductor-gemma.r installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-genarise shpc-registry automated BioContainers addition for bioconductor-genarise
GITHUB quay.io/biocontainers/bioconductor-genbankr shpc-registry automated BioContainers addition for bioconductor-genbankr wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-geneaccord shpc-registry automated BioContainers addition for bioconductor-geneaccord x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-geneanswers shpc-registry automated BioContainers addition for bioconductor-geneanswers
GITHUB quay.io/biocontainers/bioconductor-geneattribution shpc-registry automated BioContainers addition for bioconductor-geneattribution wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-genebreak shpc-registry automated BioContainers addition for bioconductor-genebreak wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-geneclassifiers shpc-registry automated BioContainers addition for bioconductor-geneclassifiers gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-geneexpressionsignature shpc-registry automated BioContainers addition for bioconductor-geneexpressionsignature
GITHUB quay.io/biocontainers/bioconductor-genefilter shpc-registry automated BioContainers addition for bioconductor-genefilter
GITHUB quay.io/biocontainers/bioconductor-genefu shpc-registry automated BioContainers addition for bioconductor-genefu
GITHUB quay.io/biocontainers/bioconductor-genega shpc-registry automated BioContainers addition for bioconductor-genega
GITHUB quay.io/biocontainers/bioconductor-genegeneinter shpc-registry automated BioContainers addition for bioconductor-genegeneinter wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-genelendatabase shpc-registry automated BioContainers addition for bioconductor-genelendatabase pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-genemeta shpc-registry automated BioContainers addition for bioconductor-genemeta
GITHUB quay.io/biocontainers/bioconductor-genenetworkbuilder shpc-registry automated BioContainers addition for bioconductor-genenetworkbuilder
GITHUB quay.io/biocontainers/bioconductor-geneoverlap shpc-registry automated BioContainers addition for bioconductor-geneoverlap
GITHUB quay.io/biocontainers/bioconductor-geneplast.data shpc-registry automated BioContainers addition for bioconductor-geneplast.data
GITHUB quay.io/biocontainers/bioconductor-geneplast.data.string.v91 shpc-registry automated BioContainers addition for bioconductor-geneplast.data.string.v91
GITHUB quay.io/biocontainers/bioconductor-geneplast shpc-registry automated BioContainers addition for bioconductor-geneplast c89, c99
GITHUB quay.io/biocontainers/bioconductor-geneplotter shpc-registry automated BioContainers addition for bioconductor-geneplotter
GITHUB quay.io/biocontainers/bioconductor-generecommender shpc-registry automated BioContainers addition for bioconductor-generecommender
GITHUB quay.io/biocontainers/bioconductor-generegionscan shpc-registry automated BioContainers addition for bioconductor-generegionscan
GITHUB quay.io/biocontainers/bioconductor-generxcluster shpc-registry automated BioContainers addition for bioconductor-generxcluster
GITHUB quay.io/biocontainers/bioconductor-geneselectmmd shpc-registry automated BioContainers addition for bioconductor-geneselectmmd
GITHUB quay.io/biocontainers/bioconductor-geneselector shpc-registry automated BioContainers addition for bioconductor-geneselector c89, c99
GITHUB quay.io/biocontainers/bioconductor-genesis shpc-registry automated BioContainers addition for bioconductor-genesis glpsol, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-genestructuretools shpc-registry automated BioContainers addition for bioconductor-genestructuretools 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-genesummary shpc-registry automated BioContainers addition for bioconductor-genesummary
GITHUB quay.io/biocontainers/bioconductor-genetclassifier shpc-registry automated BioContainers addition for bioconductor-genetclassifier
GITHUB quay.io/biocontainers/bioconductor-geneticsdesign shpc-registry automated BioContainers addition for bioconductor-geneticsdesign 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-geneticsped shpc-registry automated BioContainers addition for bioconductor-geneticsped
GITHUB quay.io/biocontainers/bioconductor-genetonic shpc-registry automated BioContainers addition for bioconductor-genetonic fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, pandoc
GITHUB quay.io/biocontainers/bioconductor-genextender shpc-registry automated BioContainers addition for bioconductor-genextender pandoc-citeproc, pandoc, wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-genie3 shpc-registry automated BioContainers addition for bioconductor-genie3 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-genocn shpc-registry automated BioContainers addition for bioconductor-genocn
GITHUB quay.io/biocontainers/bioconductor-genogam shpc-registry automated BioContainers addition for bioconductor-genogam x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-genomation shpc-registry automated BioContainers addition for bioconductor-genomation tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-genomationdata shpc-registry automated BioContainers addition for bioconductor-genomationdata
GITHUB quay.io/biocontainers/bioconductor-genomautomorphism singularity registry hpc automated addition for bioconductor-genomautomorphism installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-genomegraphs shpc-registry automated BioContainers addition for bioconductor-genomegraphs gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-genomeinfodb shpc-registry automated BioContainers addition for bioconductor-genomeinfodb pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-genomeinfodbdata shpc-registry automated BioContainers addition for bioconductor-genomeinfodbdata
GITHUB quay.io/biocontainers/bioconductor-genomeintervals shpc-registry automated BioContainers addition for bioconductor-genomeintervals
GITHUB quay.io/biocontainers/bioconductor-genomes shpc-registry automated BioContainers addition for bioconductor-genomes
GITHUB quay.io/biocontainers/bioconductor-genomewidesnp5crlmm shpc-registry automated BioContainers addition for bioconductor-genomewidesnp5crlmm
GITHUB quay.io/biocontainers/bioconductor-genomewidesnp6crlmm shpc-registry automated BioContainers addition for bioconductor-genomewidesnp6crlmm
GITHUB quay.io/biocontainers/bioconductor-genomicalignments shpc-registry automated BioContainers addition for bioconductor-genomicalignments pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-genomicdatacommons shpc-registry automated BioContainers addition for bioconductor-genomicdatacommons gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-genomicdistributions shpc-registry automated BioContainers addition for bioconductor-genomicdistributions
GITHUB quay.io/biocontainers/bioconductor-genomicdistributionsdata shpc-registry automated BioContainers addition for bioconductor-genomicdistributionsdata
GITHUB quay.io/biocontainers/bioconductor-genomicfeatures shpc-registry automated BioContainers addition for bioconductor-genomicfeatures
GITHUB quay.io/biocontainers/bioconductor-genomicfiles shpc-registry automated BioContainers addition for bioconductor-genomicfiles
GITHUB quay.io/biocontainers/bioconductor-genomicinstability shpc-registry automated BioContainers addition for bioconductor-genomicinstability
GITHUB quay.io/biocontainers/bioconductor-genomicinteractionnodes singularity registry hpc automated addition for bioconductor-genomicinteractionnodes installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-genomicinteractions shpc-registry automated BioContainers addition for bioconductor-genomicinteractions
GITHUB quay.io/biocontainers/bioconductor-genomicozone shpc-registry automated BioContainers addition for bioconductor-genomicozone
GITHUB quay.io/biocontainers/bioconductor-genomicplot singularity registry hpc automated addition for bioconductor-genomicplot protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin
GITHUB quay.io/biocontainers/bioconductor-genomicranges shpc-registry automated BioContainers addition for bioconductor-genomicranges
GITHUB quay.io/biocontainers/bioconductor-genomicscores shpc-registry automated BioContainers addition for bioconductor-genomicscores
GITHUB quay.io/biocontainers/bioconductor-genomicstate shpc-registry automated BioContainers addition for bioconductor-genomicstate x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-genomicsupersignature shpc-registry automated BioContainers addition for bioconductor-genomicsupersignature pandoc
GITHUB quay.io/biocontainers/bioconductor-genomictuples shpc-registry automated BioContainers addition for bioconductor-genomictuples
GITHUB quay.io/biocontainers/bioconductor-genominator shpc-registry automated BioContainers addition for bioconductor-genominator gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-genoset shpc-registry automated BioContainers addition for bioconductor-genoset x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-genotypeeval shpc-registry automated BioContainers addition for bioconductor-genotypeeval
GITHUB quay.io/biocontainers/bioconductor-genphen shpc-registry automated BioContainers addition for bioconductor-genphen
GITHUB quay.io/biocontainers/bioconductor-genproseq singularity registry hpc automated addition for bioconductor-genproseq git2_cli, jpackage, cups-config, ippeveprinter, ipptool, glpsol, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap
GITHUB quay.io/biocontainers/bioconductor-genrank shpc-registry automated BioContainers addition for bioconductor-genrank ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-genvisr shpc-registry automated BioContainers addition for bioconductor-genvisr my_print_defaults, mysql_config, perror, wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-geodiff shpc-registry automated BioContainers addition for bioconductor-geodiff f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-geoexplorer shpc-registry automated BioContainers addition for bioconductor-geoexplorer pandoc
GITHUB quay.io/biocontainers/bioconductor-geofastq shpc-registry automated BioContainers addition for bioconductor-geofastq
GITHUB quay.io/biocontainers/bioconductor-geometadb shpc-registry automated BioContainers addition for bioconductor-geometadb
GITHUB quay.io/biocontainers/bioconductor-geomxtools shpc-registry automated BioContainers addition for bioconductor-geomxtools
GITHUB quay.io/biocontainers/bioconductor-geoquery shpc-registry automated BioContainers addition for bioconductor-geoquery
GITHUB quay.io/biocontainers/bioconductor-geosubmission shpc-registry automated BioContainers addition for bioconductor-geosubmission
GITHUB quay.io/biocontainers/bioconductor-geotcgadata singularity registry hpc automated addition for bioconductor-geotcgadata hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-gep2pep shpc-registry automated BioContainers addition for bioconductor-gep2pep 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-gesper shpc-registry automated BioContainers addition for bioconductor-gesper
GITHUB quay.io/biocontainers/bioconductor-getdee2 shpc-registry automated BioContainers addition for bioconductor-getdee2
GITHUB quay.io/biocontainers/bioconductor-geuvadistranscriptexpr shpc-registry automated BioContainers addition for bioconductor-geuvadistranscriptexpr
GITHUB quay.io/biocontainers/bioconductor-geuvpack shpc-registry automated BioContainers addition for bioconductor-geuvpack x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-geuvstore2 shpc-registry automated BioContainers addition for bioconductor-geuvstore2 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-geva shpc-registry automated BioContainers addition for bioconductor-geva
GITHUB quay.io/biocontainers/bioconductor-gewist shpc-registry automated BioContainers addition for bioconductor-gewist
GITHUB quay.io/biocontainers/bioconductor-gg4way singularity registry hpc automated addition for bioconductor-gg4way pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete
GITHUB quay.io/biocontainers/bioconductor-ggbase shpc-registry automated BioContainers addition for bioconductor-ggbase x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-ggbio shpc-registry automated BioContainers addition for bioconductor-ggbio
GITHUB quay.io/biocontainers/bioconductor-ggcyto shpc-registry automated BioContainers addition for bioconductor-ggcyto
GITHUB quay.io/biocontainers/bioconductor-ggdata shpc-registry automated BioContainers addition for bioconductor-ggdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-gghumanmethcancerpanelv1.db shpc-registry automated BioContainers addition for bioconductor-gghumanmethcancerpanelv1.db
GITHUB quay.io/biocontainers/bioconductor-ggkegg singularity registry hpc automated addition for bioconductor-ggkegg pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, display, identify, import, magick, magick-script, mogrify, montage, convert, pkg-config, pkg-config.bin, stream, compare
GITHUB quay.io/biocontainers/bioconductor-ggmanh singularity registry hpc automated addition for bioconductor-ggmanh installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-ggmsa shpc-registry automated BioContainers addition for bioconductor-ggmsa projsync, invgeod, invproj, projinfo, cct, gie, cs2cs, geod, proj
GITHUB quay.io/biocontainers/bioconductor-ggpa shpc-registry automated BioContainers addition for bioconductor-ggpa
GITHUB quay.io/biocontainers/bioconductor-ggsc singularity registry hpc automated addition for bioconductor-ggsc pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-ggseqalign singularity registry hpc automated addition for bioconductor-ggseqalign x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-ggspavis shpc-registry automated BioContainers addition for bioconductor-ggspavis x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify
GITHUB quay.io/biocontainers/bioconductor-ggtools shpc-registry automated BioContainers addition for bioconductor-ggtools 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ggtree shpc-registry automated BioContainers addition for bioconductor-ggtree
GITHUB quay.io/biocontainers/bioconductor-ggtreedendro singularity registry hpc automated addition for bioconductor-ggtreedendro
GITHUB quay.io/biocontainers/bioconductor-ggtreeextra shpc-registry automated BioContainers addition for bioconductor-ggtreeextra
GITHUB quay.io/biocontainers/bioconductor-gigsea shpc-registry automated BioContainers addition for bioconductor-gigsea x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-gigseadata shpc-registry automated BioContainers addition for bioconductor-gigseadata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-girafe shpc-registry automated BioContainers addition for bioconductor-girafe
GITHUB quay.io/biocontainers/bioconductor-gispa shpc-registry automated BioContainers addition for bioconductor-gispa gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-glad shpc-registry automated BioContainers addition for bioconductor-glad
GITHUB quay.io/biocontainers/bioconductor-gladiatox shpc-registry automated BioContainers addition for bioconductor-gladiatox my_print_defaults, mysql_config, perror, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-glimma shpc-registry automated BioContainers addition for bioconductor-glimma
GITHUB quay.io/biocontainers/bioconductor-glmgampoi shpc-registry automated BioContainers addition for bioconductor-glmgampoi
GITHUB quay.io/biocontainers/bioconductor-glmsparsenet shpc-registry automated BioContainers addition for bioconductor-glmsparsenet x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-globalancova shpc-registry automated BioContainers addition for bioconductor-globalancova x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-globalseq shpc-registry automated BioContainers addition for bioconductor-globalseq
GITHUB quay.io/biocontainers/bioconductor-globaltest shpc-registry automated BioContainers addition for bioconductor-globaltest
GITHUB quay.io/biocontainers/bioconductor-gloscope singularity registry hpc automated addition for bioconductor-gloscope pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete
GITHUB quay.io/biocontainers/bioconductor-gmapr shpc-registry automated BioContainers addition for bioconductor-gmapr
GITHUB quay.io/biocontainers/bioconductor-gmicr shpc-registry automated BioContainers addition for bioconductor-gmicr
GITHUB quay.io/biocontainers/bioconductor-gmoviz shpc-registry automated BioContainers addition for bioconductor-gmoviz
GITHUB quay.io/biocontainers/bioconductor-gmrp shpc-registry automated BioContainers addition for bioconductor-gmrp wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-gnet2 shpc-registry automated BioContainers addition for bioconductor-gnet2 xgboost, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-gnosis singularity registry hpc automated addition for bioconductor-gnosis protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin
GITHUB quay.io/biocontainers/bioconductor-go.db shpc-registry automated BioContainers addition for bioconductor-go.db gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-goexpress shpc-registry automated BioContainers addition for bioconductor-goexpress
GITHUB quay.io/biocontainers/bioconductor-gofuncr shpc-registry automated BioContainers addition for bioconductor-gofuncr 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-gofunction shpc-registry automated BioContainers addition for bioconductor-gofunction 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-golubesets shpc-registry automated BioContainers addition for bioconductor-golubesets
GITHUB quay.io/biocontainers/bioconductor-googlegenomics shpc-registry automated BioContainers addition for bioconductor-googlegenomics wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-gopro shpc-registry automated BioContainers addition for bioconductor-gopro wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-goprofiles shpc-registry automated BioContainers addition for bioconductor-goprofiles
GITHUB quay.io/biocontainers/bioconductor-gosemsim shpc-registry automated BioContainers addition for bioconductor-gosemsim wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-goseq shpc-registry automated BioContainers addition for bioconductor-goseq
GITHUB quay.io/biocontainers/bioconductor-gosim shpc-registry automated BioContainers addition for bioconductor-gosim
GITHUB quay.io/biocontainers/bioconductor-gosorensen singularity registry hpc automated addition for bioconductor-gosorensen installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-gostag shpc-registry automated BioContainers addition for bioconductor-gostag gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-gostats shpc-registry automated BioContainers addition for bioconductor-gostats
GITHUB quay.io/biocontainers/bioconductor-gosummaries shpc-registry automated BioContainers addition for bioconductor-gosummaries
GITHUB quay.io/biocontainers/bioconductor-gothic shpc-registry automated BioContainers addition for bioconductor-gothic
GITHUB quay.io/biocontainers/bioconductor-gotools shpc-registry automated BioContainers addition for bioconductor-gotools
GITHUB quay.io/biocontainers/bioconductor-gp53cdf shpc-registry automated BioContainers addition for bioconductor-gp53cdf
GITHUB quay.io/biocontainers/bioconductor-gpa shpc-registry automated BioContainers addition for bioconductor-gpa
GITHUB quay.io/biocontainers/bioconductor-gpaexample shpc-registry automated BioContainers addition for bioconductor-gpaexample
GITHUB quay.io/biocontainers/bioconductor-gpart shpc-registry automated BioContainers addition for bioconductor-gpart x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-gpls shpc-registry automated BioContainers addition for bioconductor-gpls
GITHUB quay.io/biocontainers/bioconductor-gprege shpc-registry automated BioContainers addition for bioconductor-gprege
GITHUB quay.io/biocontainers/bioconductor-gpumagic shpc-registry automated BioContainers addition for bioconductor-gpumagic x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-gqtlbase shpc-registry automated BioContainers addition for bioconductor-gqtlbase 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-gqtlstats shpc-registry automated BioContainers addition for bioconductor-gqtlstats 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-gramm4r shpc-registry automated BioContainers addition for bioconductor-gramm4r f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-granie singularity registry hpc automated addition for bioconductor-granie installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-granulator shpc-registry automated BioContainers addition for bioconductor-granulator pandoc
GITHUB quay.io/biocontainers/bioconductor-graper shpc-registry automated BioContainers addition for bioconductor-graper x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-graph shpc-registry automated BioContainers addition for bioconductor-graph
GITHUB quay.io/biocontainers/bioconductor-graphalignment shpc-registry automated BioContainers addition for bioconductor-graphalignment
GITHUB quay.io/biocontainers/bioconductor-graphat shpc-registry automated BioContainers addition for bioconductor-graphat
GITHUB quay.io/biocontainers/bioconductor-graphite shpc-registry automated BioContainers addition for bioconductor-graphite
GITHUB quay.io/biocontainers/bioconductor-graphpac shpc-registry automated BioContainers addition for bioconductor-graphpac
GITHUB quay.io/biocontainers/bioconductor-grasp2db shpc-registry automated BioContainers addition for bioconductor-grasp2db
GITHUB quay.io/biocontainers/bioconductor-greengenes13.5mgdb shpc-registry automated BioContainers addition for bioconductor-greengenes13.5mgdb x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-grenits shpc-registry automated BioContainers addition for bioconductor-grenits
GITHUB quay.io/biocontainers/bioconductor-greylistchip shpc-registry automated BioContainers addition for bioconductor-greylistchip
GITHUB quay.io/biocontainers/bioconductor-grmetrics shpc-registry automated BioContainers addition for bioconductor-grmetrics idn2, wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-grndata shpc-registry automated BioContainers addition for bioconductor-grndata
GITHUB quay.io/biocontainers/bioconductor-grohmm shpc-registry automated BioContainers addition for bioconductor-grohmm
GITHUB quay.io/biocontainers/bioconductor-grridge shpc-registry automated BioContainers addition for bioconductor-grridge gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-gsalightning shpc-registry automated BioContainers addition for bioconductor-gsalightning ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-gsar shpc-registry automated BioContainers addition for bioconductor-gsar
GITHUB quay.io/biocontainers/bioconductor-gsbenchmark shpc-registry automated BioContainers addition for bioconductor-gsbenchmark x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-gsca shpc-registry automated BioContainers addition for bioconductor-gsca ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-gscreend shpc-registry automated BioContainers addition for bioconductor-gscreend
GITHUB quay.io/biocontainers/bioconductor-gse103322 shpc-registry automated BioContainers addition for bioconductor-gse103322
GITHUB quay.io/biocontainers/bioconductor-gse13015 shpc-registry automated BioContainers addition for bioconductor-gse13015
GITHUB quay.io/biocontainers/bioconductor-gse159526 shpc-registry automated BioContainers addition for bioconductor-gse159526
GITHUB quay.io/biocontainers/bioconductor-gse62944 shpc-registry automated BioContainers addition for bioconductor-gse62944
GITHUB quay.io/biocontainers/bioconductor-gseabase shpc-registry automated BioContainers addition for bioconductor-gseabase
GITHUB quay.io/biocontainers/bioconductor-gseabenchmarker shpc-registry automated BioContainers addition for bioconductor-gseabenchmarker 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-gsealm shpc-registry automated BioContainers addition for bioconductor-gsealm
GITHUB quay.io/biocontainers/bioconductor-gseamining shpc-registry automated BioContainers addition for bioconductor-gseamining
GITHUB quay.io/biocontainers/bioconductor-gsean shpc-registry automated BioContainers addition for bioconductor-gsean 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-gsgalgor shpc-registry automated BioContainers addition for bioconductor-gsgalgor
GITHUB quay.io/biocontainers/bioconductor-gskb shpc-registry automated BioContainers addition for bioconductor-gskb x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-gsreg shpc-registry automated BioContainers addition for bioconductor-gsreg
GITHUB quay.io/biocontainers/bioconductor-gsri shpc-registry automated BioContainers addition for bioconductor-gsri
GITHUB quay.io/biocontainers/bioconductor-gsva shpc-registry automated BioContainers addition for bioconductor-gsva
GITHUB quay.io/biocontainers/bioconductor-gsvadata shpc-registry automated BioContainers addition for bioconductor-gsvadata
GITHUB quay.io/biocontainers/bioconductor-gtrellis shpc-registry automated BioContainers addition for bioconductor-gtrellis
GITHUB quay.io/biocontainers/bioconductor-guideseq shpc-registry automated BioContainers addition for bioconductor-guideseq wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-guitar shpc-registry automated BioContainers addition for bioconductor-guitar x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-gviz shpc-registry automated BioContainers addition for bioconductor-gviz
GITHUB quay.io/biocontainers/bioconductor-gwas.bayes shpc-registry automated BioContainers addition for bioconductor-gwas.bayes
GITHUB quay.io/biocontainers/bioconductor-gwascat shpc-registry automated BioContainers addition for bioconductor-gwascat
GITHUB quay.io/biocontainers/bioconductor-gwascatdata shpc-registry automated BioContainers addition for bioconductor-gwascatdata
GITHUB quay.io/biocontainers/bioconductor-gwasdata shpc-registry automated BioContainers addition for bioconductor-gwasdata f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-gwastools shpc-registry automated BioContainers addition for bioconductor-gwastools
GITHUB quay.io/biocontainers/bioconductor-gwasurvivr shpc-registry automated BioContainers addition for bioconductor-gwasurvivr x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-gwena shpc-registry automated BioContainers addition for bioconductor-gwena
GITHUB quay.io/biocontainers/bioconductor-gypsum singularity registry hpc automated addition for bioconductor-gypsum x86_64-conda-linux-gnu.cfg, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-h10kcod.db shpc-registry automated BioContainers addition for bioconductor-h10kcod.db
GITHUB quay.io/biocontainers/bioconductor-h20kcod.db shpc-registry automated BioContainers addition for bioconductor-h20kcod.db
GITHUB quay.io/biocontainers/bioconductor-h5vc shpc-registry automated BioContainers addition for bioconductor-h5vc
GITHUB quay.io/biocontainers/bioconductor-h5vcdata shpc-registry automated BioContainers addition for bioconductor-h5vcdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hapfabia shpc-registry automated BioContainers addition for bioconductor-hapfabia
GITHUB quay.io/biocontainers/bioconductor-hapmap100khind shpc-registry automated BioContainers addition for bioconductor-hapmap100khind
GITHUB quay.io/biocontainers/bioconductor-hapmap100kxba shpc-registry automated BioContainers addition for bioconductor-hapmap100kxba
GITHUB quay.io/biocontainers/bioconductor-hapmap370k shpc-registry automated BioContainers addition for bioconductor-hapmap370k
GITHUB quay.io/biocontainers/bioconductor-hapmap500knsp shpc-registry automated BioContainers addition for bioconductor-hapmap500knsp
GITHUB quay.io/biocontainers/bioconductor-hapmap500ksty shpc-registry automated BioContainers addition for bioconductor-hapmap500ksty
GITHUB quay.io/biocontainers/bioconductor-hapmapsnp5 shpc-registry automated BioContainers addition for bioconductor-hapmapsnp5
GITHUB quay.io/biocontainers/bioconductor-hapmapsnp6 shpc-registry automated BioContainers addition for bioconductor-hapmapsnp6
GITHUB quay.io/biocontainers/bioconductor-harbchip shpc-registry automated BioContainers addition for bioconductor-harbchip
GITHUB quay.io/biocontainers/bioconductor-harman shpc-registry automated BioContainers addition for bioconductor-harman
GITHUB quay.io/biocontainers/bioconductor-harmandata shpc-registry automated BioContainers addition for bioconductor-harmandata
GITHUB quay.io/biocontainers/bioconductor-harmonizedtcgadata shpc-registry automated BioContainers addition for bioconductor-harmonizedtcgadata gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-harmonizr singularity registry hpc automated addition for bioconductor-harmonizr pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete
GITHUB quay.io/biocontainers/bioconductor-harshlight shpc-registry automated BioContainers addition for bioconductor-harshlight
GITHUB quay.io/biocontainers/bioconductor-hca shpc-registry automated BioContainers addition for bioconductor-hca
GITHUB quay.io/biocontainers/bioconductor-hcabrowser shpc-registry automated BioContainers addition for bioconductor-hcabrowser x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hcadata shpc-registry automated BioContainers addition for bioconductor-hcadata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hcaexplorer shpc-registry automated BioContainers addition for bioconductor-hcaexplorer x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hcamatrixbrowser shpc-registry automated BioContainers addition for bioconductor-hcamatrixbrowser x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hcatonsildata singularity registry hpc automated addition for bioconductor-hcatonsildata pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, display, identify, import, magick, magick-script, mogrify, montage, convert, pkg-config, pkg-config.bin, stream, compare
GITHUB quay.io/biocontainers/bioconductor-hcg110.db shpc-registry automated BioContainers addition for bioconductor-hcg110.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hcg110cdf shpc-registry automated BioContainers addition for bioconductor-hcg110cdf
GITHUB quay.io/biocontainers/bioconductor-hcg110probe shpc-registry automated BioContainers addition for bioconductor-hcg110probe
GITHUB quay.io/biocontainers/bioconductor-hd2013sgi shpc-registry automated BioContainers addition for bioconductor-hd2013sgi fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/bioconductor-hdcytodata shpc-registry automated BioContainers addition for bioconductor-hdcytodata 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-hdf5array shpc-registry automated BioContainers addition for bioconductor-hdf5array
GITHUB quay.io/biocontainers/bioconductor-hdo.db singularity registry hpc automated addition for bioconductor-hdo.db installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-hdtd shpc-registry automated BioContainers addition for bioconductor-hdtd
GITHUB quay.io/biocontainers/bioconductor-healthycontrolspresencechecker singularity registry hpc automated addition for bioconductor-healthycontrolspresencechecker installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-healthyflowdata shpc-registry automated BioContainers addition for bioconductor-healthyflowdata
GITHUB quay.io/biocontainers/bioconductor-heatmaps shpc-registry automated BioContainers addition for bioconductor-heatmaps mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, mpifort, mpic++, mpicc
GITHUB quay.io/biocontainers/bioconductor-heatplus shpc-registry automated BioContainers addition for bioconductor-heatplus
GITHUB quay.io/biocontainers/bioconductor-heebodata shpc-registry automated BioContainers addition for bioconductor-heebodata
GITHUB quay.io/biocontainers/bioconductor-helloranges shpc-registry automated BioContainers addition for bioconductor-helloranges wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-hellorangesdata shpc-registry automated BioContainers addition for bioconductor-hellorangesdata wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-help shpc-registry automated BioContainers addition for bioconductor-help
GITHUB quay.io/biocontainers/bioconductor-hem shpc-registry automated BioContainers addition for bioconductor-hem
GITHUB quay.io/biocontainers/bioconductor-hermes singularity registry hpc automated addition for bioconductor-hermes installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-heron singularity registry hpc automated addition for bioconductor-heron bsdunzip, gdal_footprint, h5tools_test_utils, minigzip, minizip, protoc-24.4.0, sozip, h5fuse.sh, pg_amcheck, pcre2posix_test, gdal_create, pdfsig, bsdcat, bsdcpio, bsdtar, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pdfattach, pg_verifybackup, projsync, gdal-config, gdal_contour, gdal_grid, gdal_rasterize
GITHUB quay.io/biocontainers/bioconductor-herper shpc-registry automated BioContainers addition for bioconductor-herper
GITHUB quay.io/biocontainers/bioconductor-hgc shpc-registry automated BioContainers addition for bioconductor-hgc
GITHUB quay.io/biocontainers/bioconductor-hgfocus.db shpc-registry automated BioContainers addition for bioconductor-hgfocus.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hgfocuscdf shpc-registry automated BioContainers addition for bioconductor-hgfocuscdf
GITHUB quay.io/biocontainers/bioconductor-hgfocusprobe shpc-registry automated BioContainers addition for bioconductor-hgfocusprobe
GITHUB quay.io/biocontainers/bioconductor-hgu133a.db shpc-registry automated BioContainers addition for bioconductor-hgu133a.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hgu133a2.db shpc-registry automated BioContainers addition for bioconductor-hgu133a2.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hgu133a2cdf shpc-registry automated BioContainers addition for bioconductor-hgu133a2cdf
GITHUB quay.io/biocontainers/bioconductor-hgu133a2frmavecs shpc-registry automated BioContainers addition for bioconductor-hgu133a2frmavecs
GITHUB quay.io/biocontainers/bioconductor-hgu133a2probe shpc-registry automated BioContainers addition for bioconductor-hgu133a2probe
GITHUB quay.io/biocontainers/bioconductor-hgu133abarcodevecs shpc-registry automated BioContainers addition for bioconductor-hgu133abarcodevecs
GITHUB quay.io/biocontainers/bioconductor-hgu133acdf shpc-registry automated BioContainers addition for bioconductor-hgu133acdf
GITHUB quay.io/biocontainers/bioconductor-hgu133afrmavecs shpc-registry automated BioContainers addition for bioconductor-hgu133afrmavecs
GITHUB quay.io/biocontainers/bioconductor-hgu133aprobe shpc-registry automated BioContainers addition for bioconductor-hgu133aprobe
GITHUB quay.io/biocontainers/bioconductor-hgu133atagcdf shpc-registry automated BioContainers addition for bioconductor-hgu133atagcdf
GITHUB quay.io/biocontainers/bioconductor-hgu133atagprobe shpc-registry automated BioContainers addition for bioconductor-hgu133atagprobe
GITHUB quay.io/biocontainers/bioconductor-hgu133b.db shpc-registry automated BioContainers addition for bioconductor-hgu133b.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hgu133bcdf shpc-registry automated BioContainers addition for bioconductor-hgu133bcdf
GITHUB quay.io/biocontainers/bioconductor-hgu133bprobe shpc-registry automated BioContainers addition for bioconductor-hgu133bprobe
GITHUB quay.io/biocontainers/bioconductor-hgu133plus2.db shpc-registry automated BioContainers addition for bioconductor-hgu133plus2.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hgu133plus2barcodevecs shpc-registry automated BioContainers addition for bioconductor-hgu133plus2barcodevecs
GITHUB quay.io/biocontainers/bioconductor-hgu133plus2cdf shpc-registry automated BioContainers addition for bioconductor-hgu133plus2cdf
GITHUB quay.io/biocontainers/bioconductor-hgu133plus2cellscore shpc-registry automated BioContainers addition for bioconductor-hgu133plus2cellscore 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-hgu133plus2frmavecs shpc-registry automated BioContainers addition for bioconductor-hgu133plus2frmavecs
GITHUB quay.io/biocontainers/bioconductor-hgu133plus2probe shpc-registry automated BioContainers addition for bioconductor-hgu133plus2probe
GITHUB quay.io/biocontainers/bioconductor-hgu219.db shpc-registry automated BioContainers addition for bioconductor-hgu219.db
GITHUB quay.io/biocontainers/bioconductor-hgu219cdf shpc-registry automated BioContainers addition for bioconductor-hgu219cdf
GITHUB quay.io/biocontainers/bioconductor-hgu219probe shpc-registry automated BioContainers addition for bioconductor-hgu219probe
GITHUB quay.io/biocontainers/bioconductor-hgu2beta7 shpc-registry automated BioContainers addition for bioconductor-hgu2beta7
GITHUB quay.io/biocontainers/bioconductor-hgu95a.db shpc-registry automated BioContainers addition for bioconductor-hgu95a.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hgu95acdf shpc-registry automated BioContainers addition for bioconductor-hgu95acdf
GITHUB quay.io/biocontainers/bioconductor-hgu95aprobe shpc-registry automated BioContainers addition for bioconductor-hgu95aprobe
GITHUB quay.io/biocontainers/bioconductor-hgu95av2.db shpc-registry automated BioContainers addition for bioconductor-hgu95av2.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hgu95av2 shpc-registry automated BioContainers addition for bioconductor-hgu95av2
GITHUB quay.io/biocontainers/bioconductor-hgu95av2cdf shpc-registry automated BioContainers addition for bioconductor-hgu95av2cdf
GITHUB quay.io/biocontainers/bioconductor-hgu95av2probe shpc-registry automated BioContainers addition for bioconductor-hgu95av2probe
GITHUB quay.io/biocontainers/bioconductor-hgu95b.db shpc-registry automated BioContainers addition for bioconductor-hgu95b.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hgu95bcdf shpc-registry automated BioContainers addition for bioconductor-hgu95bcdf
GITHUB quay.io/biocontainers/bioconductor-hgu95bprobe shpc-registry automated BioContainers addition for bioconductor-hgu95bprobe
GITHUB quay.io/biocontainers/bioconductor-hgu95c.db shpc-registry automated BioContainers addition for bioconductor-hgu95c.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hgu95ccdf shpc-registry automated BioContainers addition for bioconductor-hgu95ccdf
GITHUB quay.io/biocontainers/bioconductor-hgu95cprobe shpc-registry automated BioContainers addition for bioconductor-hgu95cprobe
GITHUB quay.io/biocontainers/bioconductor-hgu95d.db shpc-registry automated BioContainers addition for bioconductor-hgu95d.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hgu95dcdf shpc-registry automated BioContainers addition for bioconductor-hgu95dcdf
GITHUB quay.io/biocontainers/bioconductor-hgu95dprobe shpc-registry automated BioContainers addition for bioconductor-hgu95dprobe
GITHUB quay.io/biocontainers/bioconductor-hgu95e.db shpc-registry automated BioContainers addition for bioconductor-hgu95e.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hgu95ecdf shpc-registry automated BioContainers addition for bioconductor-hgu95ecdf
GITHUB quay.io/biocontainers/bioconductor-hgu95eprobe shpc-registry automated BioContainers addition for bioconductor-hgu95eprobe
GITHUB quay.io/biocontainers/bioconductor-hguatlas13k.db shpc-registry automated BioContainers addition for bioconductor-hguatlas13k.db
GITHUB quay.io/biocontainers/bioconductor-hgubeta7.db shpc-registry automated BioContainers addition for bioconductor-hgubeta7.db
GITHUB quay.io/biocontainers/bioconductor-hgudkfz31.db shpc-registry automated BioContainers addition for bioconductor-hgudkfz31.db
GITHUB quay.io/biocontainers/bioconductor-hgug4100a.db shpc-registry automated BioContainers addition for bioconductor-hgug4100a.db
GITHUB quay.io/biocontainers/bioconductor-hgug4101a.db shpc-registry automated BioContainers addition for bioconductor-hgug4101a.db
GITHUB quay.io/biocontainers/bioconductor-hgug4110b.db shpc-registry automated BioContainers addition for bioconductor-hgug4110b.db
GITHUB quay.io/biocontainers/bioconductor-hgug4111a.db shpc-registry automated BioContainers addition for bioconductor-hgug4111a.db
GITHUB quay.io/biocontainers/bioconductor-hgug4112a.db shpc-registry automated BioContainers addition for bioconductor-hgug4112a.db
GITHUB quay.io/biocontainers/bioconductor-hgug4845a.db shpc-registry automated BioContainers addition for bioconductor-hgug4845a.db
GITHUB quay.io/biocontainers/bioconductor-hguqiagenv3.db shpc-registry automated BioContainers addition for bioconductor-hguqiagenv3.db
GITHUB quay.io/biocontainers/bioconductor-hi16cod.db shpc-registry automated BioContainers addition for bioconductor-hi16cod.db
GITHUB quay.io/biocontainers/bioconductor-hiannotator shpc-registry automated BioContainers addition for bioconductor-hiannotator
GITHUB quay.io/biocontainers/bioconductor-hibag shpc-registry automated BioContainers addition for bioconductor-hibag
GITHUB quay.io/biocontainers/bioconductor-hibed singularity registry hpc automated addition for bioconductor-hibed pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-hicbricks shpc-registry automated BioContainers addition for bioconductor-hicbricks x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hiccompare shpc-registry automated BioContainers addition for bioconductor-hiccompare gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-hicdatahumanimr90 shpc-registry automated BioContainers addition for bioconductor-hicdatahumanimr90 x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hicdatalymphoblast shpc-registry automated BioContainers addition for bioconductor-hicdatalymphoblast
GITHUB quay.io/biocontainers/bioconductor-hicdcplus shpc-registry automated BioContainers addition for bioconductor-hicdcplus glpsol
GITHUB quay.io/biocontainers/bioconductor-hicdoc singularity registry hpc automated addition for bioconductor-hicdoc installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-hicexperiment singularity registry hpc automated addition for bioconductor-hicexperiment hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-hicontacts singularity registry hpc automated addition for bioconductor-hicontacts installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-hicontactsdata singularity registry hpc automated addition for bioconductor-hicontactsdata installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-hicool singularity registry hpc automated addition for bioconductor-hicool pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-hicrep shpc-registry automated BioContainers addition for bioconductor-hicrep gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-hicvenndiagram singularity registry hpc automated addition for bioconductor-hicvenndiagram pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-hiergwas shpc-registry automated BioContainers addition for bioconductor-hiergwas
GITHUB quay.io/biocontainers/bioconductor-hierinf shpc-registry automated BioContainers addition for bioconductor-hierinf x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-highlyreplicatedrnaseq shpc-registry automated BioContainers addition for bioconductor-highlyreplicatedrnaseq
GITHUB quay.io/biocontainers/bioconductor-hiiragi2013 shpc-registry automated BioContainers addition for bioconductor-hiiragi2013
GITHUB quay.io/biocontainers/bioconductor-hilbertcurve shpc-registry automated BioContainers addition for bioconductor-hilbertcurve
GITHUB quay.io/biocontainers/bioconductor-hilbertvis shpc-registry automated BioContainers addition for bioconductor-hilbertvis
GITHUB quay.io/biocontainers/bioconductor-hilda shpc-registry automated BioContainers addition for bioconductor-hilda jags
GITHUB quay.io/biocontainers/bioconductor-hipathia shpc-registry automated BioContainers addition for bioconductor-hipathia x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hippo shpc-registry automated BioContainers addition for bioconductor-hippo
GITHUB quay.io/biocontainers/bioconductor-hireadsprocessor shpc-registry automated BioContainers addition for bioconductor-hireadsprocessor
GITHUB quay.io/biocontainers/bioconductor-hireewas shpc-registry automated BioContainers addition for bioconductor-hireewas x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hitc shpc-registry automated BioContainers addition for bioconductor-hitc
GITHUB quay.io/biocontainers/bioconductor-hivcdnavantwout03 shpc-registry automated BioContainers addition for bioconductor-hivcdnavantwout03
GITHUB quay.io/biocontainers/bioconductor-hivprtplus2cdf shpc-registry automated BioContainers addition for bioconductor-hivprtplus2cdf
GITHUB quay.io/biocontainers/bioconductor-hmdbquery shpc-registry automated BioContainers addition for bioconductor-hmdbquery 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-hmmcopy shpc-registry automated BioContainers addition for bioconductor-hmmcopy
GITHUB quay.io/biocontainers/bioconductor-hmp16sdata shpc-registry automated BioContainers addition for bioconductor-hmp16sdata pandoc-citeproc, pandoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-hmp2data shpc-registry automated BioContainers addition for bioconductor-hmp2data pandoc-server, glpsol, pandoc
GITHUB quay.io/biocontainers/bioconductor-hmyrib36 shpc-registry automated BioContainers addition for bioconductor-hmyrib36 x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-holofoodr singularity registry hpc automated addition for bioconductor-holofoodr x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-hom.at.inp.db shpc-registry automated BioContainers addition for bioconductor-hom.at.inp.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hom.ce.inp.db shpc-registry automated BioContainers addition for bioconductor-hom.ce.inp.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hom.dm.inp.db shpc-registry automated BioContainers addition for bioconductor-hom.dm.inp.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hom.dr.inp.db shpc-registry automated BioContainers addition for bioconductor-hom.dr.inp.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hom.hs.inp.db shpc-registry automated BioContainers addition for bioconductor-hom.hs.inp.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hom.mm.inp.db shpc-registry automated BioContainers addition for bioconductor-hom.mm.inp.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hom.rn.inp.db shpc-registry automated BioContainers addition for bioconductor-hom.rn.inp.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hom.sc.inp.db shpc-registry automated BioContainers addition for bioconductor-hom.sc.inp.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-homo.sapiens shpc-registry automated BioContainers addition for bioconductor-homo.sapiens x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hoodscanr singularity registry hpc automated addition for bioconductor-hoodscanr pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, display, identify, import, magick, magick-script, mogrify, montage, convert, pkg-config, pkg-config.bin, stream, compare
GITHUB quay.io/biocontainers/bioconductor-hopach shpc-registry automated BioContainers addition for bioconductor-hopach
GITHUB quay.io/biocontainers/bioconductor-hpaanalyze shpc-registry automated BioContainers addition for bioconductor-hpaanalyze x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hpannot shpc-registry automated BioContainers addition for bioconductor-hpannot
GITHUB quay.io/biocontainers/bioconductor-hpar shpc-registry automated BioContainers addition for bioconductor-hpar
GITHUB quay.io/biocontainers/bioconductor-hpastainr shpc-registry automated BioContainers addition for bioconductor-hpastainr
GITHUB quay.io/biocontainers/bioconductor-hpip shpc-registry automated BioContainers addition for bioconductor-hpip
GITHUB quay.io/biocontainers/bioconductor-hpo.db singularity registry hpc automated addition for bioconductor-hpo.db pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-hs25kresogen.db shpc-registry automated BioContainers addition for bioconductor-hs25kresogen.db
GITHUB quay.io/biocontainers/bioconductor-hs6ug171.db shpc-registry automated BioContainers addition for bioconductor-hs6ug171.db
GITHUB quay.io/biocontainers/bioconductor-hsagilentdesign026652.db shpc-registry automated BioContainers addition for bioconductor-hsagilentdesign026652.db
GITHUB quay.io/biocontainers/bioconductor-hsmmsinglecell shpc-registry automated BioContainers addition for bioconductor-hsmmsinglecell x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hspec shpc-registry automated BioContainers addition for bioconductor-hspec
GITHUB quay.io/biocontainers/bioconductor-hspeccdf shpc-registry automated BioContainers addition for bioconductor-hspeccdf
GITHUB quay.io/biocontainers/bioconductor-hta20probeset.db shpc-registry automated BioContainers addition for bioconductor-hta20probeset.db
GITHUB quay.io/biocontainers/bioconductor-hta20transcriptcluster.db shpc-registry automated BioContainers addition for bioconductor-hta20transcriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-hthgu133a.db shpc-registry automated BioContainers addition for bioconductor-hthgu133a.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hthgu133acdf shpc-registry automated BioContainers addition for bioconductor-hthgu133acdf
GITHUB quay.io/biocontainers/bioconductor-hthgu133afrmavecs shpc-registry automated BioContainers addition for bioconductor-hthgu133afrmavecs
GITHUB quay.io/biocontainers/bioconductor-hthgu133aprobe shpc-registry automated BioContainers addition for bioconductor-hthgu133aprobe
GITHUB quay.io/biocontainers/bioconductor-hthgu133b.db shpc-registry automated BioContainers addition for bioconductor-hthgu133b.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hthgu133bcdf shpc-registry automated BioContainers addition for bioconductor-hthgu133bcdf
GITHUB quay.io/biocontainers/bioconductor-hthgu133bprobe shpc-registry automated BioContainers addition for bioconductor-hthgu133bprobe
GITHUB quay.io/biocontainers/bioconductor-hthgu133plusa.db shpc-registry automated BioContainers addition for bioconductor-hthgu133plusa.db
GITHUB quay.io/biocontainers/bioconductor-hthgu133plusb.db shpc-registry automated BioContainers addition for bioconductor-hthgu133plusb.db
GITHUB quay.io/biocontainers/bioconductor-hthgu133pluspm.db shpc-registry automated BioContainers addition for bioconductor-hthgu133pluspm.db
GITHUB quay.io/biocontainers/bioconductor-hthgu133pluspmcdf shpc-registry automated BioContainers addition for bioconductor-hthgu133pluspmcdf
GITHUB quay.io/biocontainers/bioconductor-hthgu133pluspmprobe shpc-registry automated BioContainers addition for bioconductor-hthgu133pluspmprobe
GITHUB quay.io/biocontainers/bioconductor-htmg430a.db shpc-registry automated BioContainers addition for bioconductor-htmg430a.db
GITHUB quay.io/biocontainers/bioconductor-htmg430acdf shpc-registry automated BioContainers addition for bioconductor-htmg430acdf
GITHUB quay.io/biocontainers/bioconductor-htmg430aprobe shpc-registry automated BioContainers addition for bioconductor-htmg430aprobe
GITHUB quay.io/biocontainers/bioconductor-htmg430b.db shpc-registry automated BioContainers addition for bioconductor-htmg430b.db
GITHUB quay.io/biocontainers/bioconductor-htmg430bcdf shpc-registry automated BioContainers addition for bioconductor-htmg430bcdf
GITHUB quay.io/biocontainers/bioconductor-htmg430bprobe shpc-registry automated BioContainers addition for bioconductor-htmg430bprobe
GITHUB quay.io/biocontainers/bioconductor-htmg430pm.db shpc-registry automated BioContainers addition for bioconductor-htmg430pm.db
GITHUB quay.io/biocontainers/bioconductor-htmg430pmcdf shpc-registry automated BioContainers addition for bioconductor-htmg430pmcdf
GITHUB quay.io/biocontainers/bioconductor-htmg430pmprobe shpc-registry automated BioContainers addition for bioconductor-htmg430pmprobe
GITHUB quay.io/biocontainers/bioconductor-htqpcr shpc-registry automated BioContainers addition for bioconductor-htqpcr
GITHUB quay.io/biocontainers/bioconductor-htrat230pm.db shpc-registry automated BioContainers addition for bioconductor-htrat230pm.db
GITHUB quay.io/biocontainers/bioconductor-htrat230pmcdf shpc-registry automated BioContainers addition for bioconductor-htrat230pmcdf
GITHUB quay.io/biocontainers/bioconductor-htrat230pmprobe shpc-registry automated BioContainers addition for bioconductor-htrat230pmprobe
GITHUB quay.io/biocontainers/bioconductor-htratfocus.db shpc-registry automated BioContainers addition for bioconductor-htratfocus.db
GITHUB quay.io/biocontainers/bioconductor-htratfocuscdf shpc-registry automated BioContainers addition for bioconductor-htratfocuscdf
GITHUB quay.io/biocontainers/bioconductor-htratfocusprobe shpc-registry automated BioContainers addition for bioconductor-htratfocusprobe
GITHUB quay.io/biocontainers/bioconductor-htsanalyzer shpc-registry automated BioContainers addition for bioconductor-htsanalyzer gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-htseqgenie shpc-registry automated BioContainers addition for bioconductor-htseqgenie
GITHUB quay.io/biocontainers/bioconductor-htseqtools shpc-registry automated BioContainers addition for bioconductor-htseqtools gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-htsfilter shpc-registry automated BioContainers addition for bioconductor-htsfilter
GITHUB quay.io/biocontainers/bioconductor-hu35ksuba.db shpc-registry automated BioContainers addition for bioconductor-hu35ksuba.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hu35ksubacdf shpc-registry automated BioContainers addition for bioconductor-hu35ksubacdf
GITHUB quay.io/biocontainers/bioconductor-hu35ksubaprobe shpc-registry automated BioContainers addition for bioconductor-hu35ksubaprobe
GITHUB quay.io/biocontainers/bioconductor-hu35ksubb.db shpc-registry automated BioContainers addition for bioconductor-hu35ksubb.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hu35ksubbcdf shpc-registry automated BioContainers addition for bioconductor-hu35ksubbcdf
GITHUB quay.io/biocontainers/bioconductor-hu35ksubbprobe shpc-registry automated BioContainers addition for bioconductor-hu35ksubbprobe
GITHUB quay.io/biocontainers/bioconductor-hu35ksubc.db shpc-registry automated BioContainers addition for bioconductor-hu35ksubc.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hu35ksubccdf shpc-registry automated BioContainers addition for bioconductor-hu35ksubccdf
GITHUB quay.io/biocontainers/bioconductor-hu35ksubcprobe shpc-registry automated BioContainers addition for bioconductor-hu35ksubcprobe
GITHUB quay.io/biocontainers/bioconductor-hu35ksubd.db shpc-registry automated BioContainers addition for bioconductor-hu35ksubd.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hu35ksubdcdf shpc-registry automated BioContainers addition for bioconductor-hu35ksubdcdf
GITHUB quay.io/biocontainers/bioconductor-hu35ksubdprobe shpc-registry automated BioContainers addition for bioconductor-hu35ksubdprobe
GITHUB quay.io/biocontainers/bioconductor-hu6800.db shpc-registry automated BioContainers addition for bioconductor-hu6800.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hu6800cdf shpc-registry automated BioContainers addition for bioconductor-hu6800cdf
GITHUB quay.io/biocontainers/bioconductor-hu6800probe shpc-registry automated BioContainers addition for bioconductor-hu6800probe
GITHUB quay.io/biocontainers/bioconductor-hu6800subacdf shpc-registry automated BioContainers addition for bioconductor-hu6800subacdf
GITHUB quay.io/biocontainers/bioconductor-hu6800subbcdf shpc-registry automated BioContainers addition for bioconductor-hu6800subbcdf
GITHUB quay.io/biocontainers/bioconductor-hu6800subccdf shpc-registry automated BioContainers addition for bioconductor-hu6800subccdf
GITHUB quay.io/biocontainers/bioconductor-hu6800subdcdf shpc-registry automated BioContainers addition for bioconductor-hu6800subdcdf
GITHUB quay.io/biocontainers/bioconductor-hubpub shpc-registry automated BioContainers addition for bioconductor-hubpub
GITHUB quay.io/biocontainers/bioconductor-huex.1.0.st.v2frmavecs shpc-registry automated BioContainers addition for bioconductor-huex.1.0.st.v2frmavecs
GITHUB quay.io/biocontainers/bioconductor-huex10stprobeset.db shpc-registry automated BioContainers addition for bioconductor-huex10stprobeset.db
GITHUB quay.io/biocontainers/bioconductor-huex10sttranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-huex10sttranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-huexexonprobesetlocation shpc-registry automated BioContainers addition for bioconductor-huexexonprobesetlocation
GITHUB quay.io/biocontainers/bioconductor-huexexonprobesetlocationhg18 shpc-registry automated BioContainers addition for bioconductor-huexexonprobesetlocationhg18
GITHUB quay.io/biocontainers/bioconductor-huexexonprobesetlocationhg19 shpc-registry automated BioContainers addition for bioconductor-huexexonprobesetlocationhg19
GITHUB quay.io/biocontainers/bioconductor-hugene.1.0.st.v1frmavecs shpc-registry automated BioContainers addition for bioconductor-hugene.1.0.st.v1frmavecs
GITHUB quay.io/biocontainers/bioconductor-hugene10stprobeset.db shpc-registry automated BioContainers addition for bioconductor-hugene10stprobeset.db
GITHUB quay.io/biocontainers/bioconductor-hugene10sttranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-hugene10sttranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-hugene10stv1cdf shpc-registry automated BioContainers addition for bioconductor-hugene10stv1cdf
GITHUB quay.io/biocontainers/bioconductor-hugene10stv1probe shpc-registry automated BioContainers addition for bioconductor-hugene10stv1probe
GITHUB quay.io/biocontainers/bioconductor-hugene11stprobeset.db shpc-registry automated BioContainers addition for bioconductor-hugene11stprobeset.db
GITHUB quay.io/biocontainers/bioconductor-hugene11sttranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-hugene11sttranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-hugene20stprobeset.db shpc-registry automated BioContainers addition for bioconductor-hugene20stprobeset.db
GITHUB quay.io/biocontainers/bioconductor-hugene20sttranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-hugene20sttranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-hugene21stprobeset.db shpc-registry automated BioContainers addition for bioconductor-hugene21stprobeset.db
GITHUB quay.io/biocontainers/bioconductor-hugene21sttranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-hugene21sttranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-human.db0 shpc-registry automated BioContainers addition for bioconductor-human.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-human1mduov3bcrlmm shpc-registry automated BioContainers addition for bioconductor-human1mduov3bcrlmm
GITHUB quay.io/biocontainers/bioconductor-human1mv1ccrlmm shpc-registry automated BioContainers addition for bioconductor-human1mv1ccrlmm
GITHUB quay.io/biocontainers/bioconductor-human370quadv3ccrlmm shpc-registry automated BioContainers addition for bioconductor-human370quadv3ccrlmm
GITHUB quay.io/biocontainers/bioconductor-human370v1ccrlmm shpc-registry automated BioContainers addition for bioconductor-human370v1ccrlmm
GITHUB quay.io/biocontainers/bioconductor-human550v3bcrlmm shpc-registry automated BioContainers addition for bioconductor-human550v3bcrlmm
GITHUB quay.io/biocontainers/bioconductor-human610quadv1bcrlmm shpc-registry automated BioContainers addition for bioconductor-human610quadv1bcrlmm
GITHUB quay.io/biocontainers/bioconductor-human650v3acrlmm shpc-registry automated BioContainers addition for bioconductor-human650v3acrlmm
GITHUB quay.io/biocontainers/bioconductor-human660quadv1acrlmm shpc-registry automated BioContainers addition for bioconductor-human660quadv1acrlmm
GITHUB quay.io/biocontainers/bioconductor-humanaffydata shpc-registry automated BioContainers addition for bioconductor-humanaffydata wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-humanchrloc shpc-registry automated BioContainers addition for bioconductor-humanchrloc
GITHUB quay.io/biocontainers/bioconductor-humancytosnp12v2p1hcrlmm shpc-registry automated BioContainers addition for bioconductor-humancytosnp12v2p1hcrlmm
GITHUB quay.io/biocontainers/bioconductor-humanomni1quadv1bcrlmm shpc-registry automated BioContainers addition for bioconductor-humanomni1quadv1bcrlmm
GITHUB quay.io/biocontainers/bioconductor-humanomni25quadv1bcrlmm shpc-registry automated BioContainers addition for bioconductor-humanomni25quadv1bcrlmm
GITHUB quay.io/biocontainers/bioconductor-humanomni5quadv1bcrlmm shpc-registry automated BioContainers addition for bioconductor-humanomni5quadv1bcrlmm
GITHUB quay.io/biocontainers/bioconductor-humanomniexpress12v1bcrlmm shpc-registry automated BioContainers addition for bioconductor-humanomniexpress12v1bcrlmm
GITHUB quay.io/biocontainers/bioconductor-humanstemcell shpc-registry automated BioContainers addition for bioconductor-humanstemcell
GITHUB quay.io/biocontainers/bioconductor-humantranscriptomecompendium shpc-registry automated BioContainers addition for bioconductor-humantranscriptomecompendium x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hummingbird shpc-registry automated BioContainers addition for bioconductor-hummingbird
GITHUB quay.io/biocontainers/bioconductor-huo22.db shpc-registry automated BioContainers addition for bioconductor-huo22.db
GITHUB quay.io/biocontainers/bioconductor-hwgcod.db shpc-registry automated BioContainers addition for bioconductor-hwgcod.db
GITHUB quay.io/biocontainers/bioconductor-hybridexpress singularity registry hpc automated addition for bioconductor-hybridexpress x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-hybridmtest shpc-registry automated BioContainers addition for bioconductor-hybridmtest
GITHUB quay.io/biocontainers/bioconductor-hyper shpc-registry automated BioContainers addition for bioconductor-hyper pandoc, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-hyperdraw shpc-registry automated BioContainers addition for bioconductor-hyperdraw diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts
GITHUB quay.io/biocontainers/bioconductor-hypergraph shpc-registry automated BioContainers addition for bioconductor-hypergraph
GITHUB quay.io/biocontainers/bioconductor-iaseq shpc-registry automated BioContainers addition for bioconductor-iaseq
GITHUB quay.io/biocontainers/bioconductor-iasva shpc-registry automated BioContainers addition for bioconductor-iasva x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-ibbig shpc-registry automated BioContainers addition for bioconductor-ibbig
GITHUB quay.io/biocontainers/bioconductor-ibh shpc-registry automated BioContainers addition for bioconductor-ibh
GITHUB quay.io/biocontainers/bioconductor-ibmq shpc-registry automated BioContainers addition for bioconductor-ibmq
GITHUB quay.io/biocontainers/bioconductor-icare shpc-registry automated BioContainers addition for bioconductor-icare
GITHUB quay.io/biocontainers/bioconductor-icens shpc-registry automated BioContainers addition for bioconductor-icens
GITHUB quay.io/biocontainers/bioconductor-icetea shpc-registry automated BioContainers addition for bioconductor-icetea x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-icheck shpc-registry automated BioContainers addition for bioconductor-icheck
GITHUB quay.io/biocontainers/bioconductor-ichip shpc-registry automated BioContainers addition for bioconductor-ichip
GITHUB quay.io/biocontainers/bioconductor-iclusterplus shpc-registry automated BioContainers addition for bioconductor-iclusterplus
GITHUB quay.io/biocontainers/bioconductor-icnv shpc-registry automated BioContainers addition for bioconductor-icnv 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-icobra shpc-registry automated BioContainers addition for bioconductor-icobra ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-ideal shpc-registry automated BioContainers addition for bioconductor-ideal pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ideoviz shpc-registry automated BioContainers addition for bioconductor-ideoviz
GITHUB quay.io/biocontainers/bioconductor-idiogram shpc-registry automated BioContainers addition for bioconductor-idiogram
GITHUB quay.io/biocontainers/bioconductor-idmappinganalysis shpc-registry automated BioContainers addition for bioconductor-idmappinganalysis extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/bioconductor-idmappingretrieval shpc-registry automated BioContainers addition for bioconductor-idmappingretrieval extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/bioconductor-idpr shpc-registry automated BioContainers addition for bioconductor-idpr
GITHUB quay.io/biocontainers/bioconductor-idr2d shpc-registry automated BioContainers addition for bioconductor-idr2d
GITHUB quay.io/biocontainers/bioconductor-ifaa singularity registry hpc automated addition for bioconductor-ifaa hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-igc shpc-registry automated BioContainers addition for bioconductor-igc
GITHUB quay.io/biocontainers/bioconductor-iggeneusage shpc-registry automated BioContainers addition for bioconductor-iggeneusage
GITHUB quay.io/biocontainers/bioconductor-igvr shpc-registry automated BioContainers addition for bioconductor-igvr 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ihw shpc-registry automated BioContainers addition for bioconductor-ihw ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-ihwpaper shpc-registry automated BioContainers addition for bioconductor-ihwpaper
GITHUB quay.io/biocontainers/bioconductor-illumina450probevariants.db shpc-registry automated BioContainers addition for bioconductor-illumina450probevariants.db
GITHUB quay.io/biocontainers/bioconductor-illuminadatatestfiles shpc-registry automated BioContainers addition for bioconductor-illuminadatatestfiles
GITHUB quay.io/biocontainers/bioconductor-illuminahumanmethylation27k.db shpc-registry automated BioContainers addition for bioconductor-illuminahumanmethylation27k.db
GITHUB quay.io/biocontainers/bioconductor-illuminahumanmethylation450kprobe shpc-registry automated BioContainers addition for bioconductor-illuminahumanmethylation450kprobe
GITHUB quay.io/biocontainers/bioconductor-illuminahumanv1.db shpc-registry automated BioContainers addition for bioconductor-illuminahumanv1.db
GITHUB quay.io/biocontainers/bioconductor-illuminahumanv2.db shpc-registry automated BioContainers addition for bioconductor-illuminahumanv2.db
GITHUB quay.io/biocontainers/bioconductor-illuminahumanv2beadid.db shpc-registry automated BioContainers addition for bioconductor-illuminahumanv2beadid.db
GITHUB quay.io/biocontainers/bioconductor-illuminahumanv3.db shpc-registry automated BioContainers addition for bioconductor-illuminahumanv3.db
GITHUB quay.io/biocontainers/bioconductor-illuminahumanv4.db shpc-registry automated BioContainers addition for bioconductor-illuminahumanv4.db
GITHUB quay.io/biocontainers/bioconductor-illuminahumanwgdaslv3.db shpc-registry automated BioContainers addition for bioconductor-illuminahumanwgdaslv3.db
GITHUB quay.io/biocontainers/bioconductor-illuminahumanwgdaslv4.db shpc-registry automated BioContainers addition for bioconductor-illuminahumanwgdaslv4.db
GITHUB quay.io/biocontainers/bioconductor-illuminaio shpc-registry automated BioContainers addition for bioconductor-illuminaio
GITHUB quay.io/biocontainers/bioconductor-illuminamousev1.db shpc-registry automated BioContainers addition for bioconductor-illuminamousev1.db
GITHUB quay.io/biocontainers/bioconductor-illuminamousev1p1.db shpc-registry automated BioContainers addition for bioconductor-illuminamousev1p1.db
GITHUB quay.io/biocontainers/bioconductor-illuminamousev2.db shpc-registry automated BioContainers addition for bioconductor-illuminamousev2.db 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-illuminaratv1.db shpc-registry automated BioContainers addition for bioconductor-illuminaratv1.db
GITHUB quay.io/biocontainers/bioconductor-iloreg shpc-registry automated BioContainers addition for bioconductor-iloreg
GITHUB quay.io/biocontainers/bioconductor-imagehts shpc-registry automated BioContainers addition for bioconductor-imagehts fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/bioconductor-imas shpc-registry automated BioContainers addition for bioconductor-imas gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-imcdatasets shpc-registry automated BioContainers addition for bioconductor-imcdatasets pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach, applygeo
GITHUB quay.io/biocontainers/bioconductor-imcrtools shpc-registry automated BioContainers addition for bioconductor-imcrtools testepsg, gdal_create, pdfsig, pg_standby, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach
GITHUB quay.io/biocontainers/bioconductor-imetagene shpc-registry automated BioContainers addition for bioconductor-imetagene 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-imman shpc-registry automated BioContainers addition for bioconductor-imman 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-immunespacer shpc-registry automated BioContainers addition for bioconductor-immunespacer pandoc
GITHUB quay.io/biocontainers/bioconductor-immunoclust shpc-registry automated BioContainers addition for bioconductor-immunoclust
GITHUB quay.io/biocontainers/bioconductor-immunogenviewer singularity registry hpc automated addition for bioconductor-immunogenviewer x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-immunotation shpc-registry automated BioContainers addition for bioconductor-immunotation
GITHUB quay.io/biocontainers/bioconductor-impcdata shpc-registry automated BioContainers addition for bioconductor-impcdata
GITHUB quay.io/biocontainers/bioconductor-impulsede shpc-registry automated BioContainers addition for bioconductor-impulsede
GITHUB quay.io/biocontainers/bioconductor-impulsede2 shpc-registry automated BioContainers addition for bioconductor-impulsede2 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-impute shpc-registry automated BioContainers addition for bioconductor-impute
GITHUB quay.io/biocontainers/bioconductor-indac.db shpc-registry automated BioContainers addition for bioconductor-indac.db
GITHUB quay.io/biocontainers/bioconductor-indeed shpc-registry automated BioContainers addition for bioconductor-indeed
GITHUB quay.io/biocontainers/bioconductor-inetgrate singularity registry hpc automated addition for bioconductor-inetgrate pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-infercnv shpc-registry automated BioContainers addition for bioconductor-infercnv jags, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-infinityflow shpc-registry automated BioContainers addition for bioconductor-infinityflow xgboost
GITHUB quay.io/biocontainers/bioconductor-informeasure shpc-registry automated BioContainers addition for bioconductor-informeasure
GITHUB quay.io/biocontainers/bioconductor-inpas shpc-registry automated BioContainers addition for bioconductor-inpas
GITHUB quay.io/biocontainers/bioconductor-inpower shpc-registry automated BioContainers addition for bioconductor-inpower
GITHUB quay.io/biocontainers/bioconductor-inspect shpc-registry automated BioContainers addition for bioconductor-inspect wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-intact singularity registry hpc automated addition for bioconductor-intact hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-intad shpc-registry automated BioContainers addition for bioconductor-intad 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-intansv shpc-registry automated BioContainers addition for bioconductor-intansv
GITHUB quay.io/biocontainers/bioconductor-interaccircos shpc-registry automated BioContainers addition for bioconductor-interaccircos
GITHUB quay.io/biocontainers/bioconductor-interactionset shpc-registry automated BioContainers addition for bioconductor-interactionset wget
GITHUB quay.io/biocontainers/bioconductor-interactivecomplexheatmap shpc-registry automated BioContainers addition for bioconductor-interactivecomplexheatmap pandoc
GITHUB quay.io/biocontainers/bioconductor-interactivedisplay shpc-registry automated BioContainers addition for bioconductor-interactivedisplay
GITHUB quay.io/biocontainers/bioconductor-interactivedisplaybase shpc-registry automated BioContainers addition for bioconductor-interactivedisplaybase
GITHUB quay.io/biocontainers/bioconductor-intercellar shpc-registry automated BioContainers addition for bioconductor-intercellar pandoc
GITHUB quay.io/biocontainers/bioconductor-interest shpc-registry automated BioContainers addition for bioconductor-interest my_print_defaults, mysql_config, perror, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-interminer shpc-registry automated BioContainers addition for bioconductor-interminer gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-intomics singularity registry hpc automated addition for bioconductor-intomics git2, hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, glpsol, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-intramirexplorer shpc-registry automated BioContainers addition for bioconductor-intramirexplorer gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-inversion shpc-registry automated BioContainers addition for bioconductor-inversion
GITHUB quay.io/biocontainers/bioconductor-ioniser shpc-registry automated BioContainers addition for bioconductor-ioniser gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-iontreedata shpc-registry automated BioContainers addition for bioconductor-iontreedata wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ipac shpc-registry automated BioContainers addition for bioconductor-ipac
GITHUB quay.io/biocontainers/bioconductor-ipath shpc-registry automated BioContainers addition for bioconductor-ipath f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-ipddb shpc-registry automated BioContainers addition for bioconductor-ipddb x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-ipo shpc-registry automated BioContainers addition for bioconductor-ipo gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp
GITHUB quay.io/biocontainers/bioconductor-ippd shpc-registry automated BioContainers addition for bioconductor-ippd 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-iranges shpc-registry automated BioContainers addition for bioconductor-iranges bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-irisfgm shpc-registry automated BioContainers addition for bioconductor-irisfgm geosop, geos-config, glpsol, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-isanalytics shpc-registry automated BioContainers addition for bioconductor-isanalytics
GITHUB quay.io/biocontainers/bioconductor-isee shpc-registry automated BioContainers addition for bioconductor-isee
GITHUB quay.io/biocontainers/bioconductor-iseede singularity registry hpc automated addition for bioconductor-iseede pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-iseehex singularity registry hpc automated addition for bioconductor-iseehex installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-iseehub singularity registry hpc automated addition for bioconductor-iseehub installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-iseeindex singularity registry hpc automated addition for bioconductor-iseeindex pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-iseepathways singularity registry hpc automated addition for bioconductor-iseepathways pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-iseeu shpc-registry automated BioContainers addition for bioconductor-iseeu
GITHUB quay.io/biocontainers/bioconductor-iseq shpc-registry automated BioContainers addition for bioconductor-iseq
GITHUB quay.io/biocontainers/bioconductor-islet singularity registry hpc automated addition for bioconductor-islet installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-isobar shpc-registry automated BioContainers addition for bioconductor-isobar
GITHUB quay.io/biocontainers/bioconductor-isobayes singularity registry hpc automated addition for bioconductor-isobayes pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete
GITHUB quay.io/biocontainers/bioconductor-isocorrector shpc-registry automated BioContainers addition for bioconductor-isocorrector x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-isocorrectorgui shpc-registry automated BioContainers addition for bioconductor-isocorrectorgui x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-isoformswitchanalyzer shpc-registry automated BioContainers addition for bioconductor-isoformswitchanalyzer gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-isogenegui shpc-registry automated BioContainers addition for bioconductor-isogenegui jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink
GITHUB quay.io/biocontainers/bioconductor-isolde shpc-registry automated BioContainers addition for bioconductor-isolde ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-isomirs shpc-registry automated BioContainers addition for bioconductor-isomirs wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-italics shpc-registry automated BioContainers addition for bioconductor-italics x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-italicsdata shpc-registry automated BioContainers addition for bioconductor-italicsdata
GITHUB quay.io/biocontainers/bioconductor-iterativebma shpc-registry automated BioContainers addition for bioconductor-iterativebma
GITHUB quay.io/biocontainers/bioconductor-iterativebmasurv shpc-registry automated BioContainers addition for bioconductor-iterativebmasurv
GITHUB quay.io/biocontainers/bioconductor-iterclust shpc-registry automated BioContainers addition for bioconductor-iterclust gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-iteremoval shpc-registry automated BioContainers addition for bioconductor-iteremoval 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ivas shpc-registry automated BioContainers addition for bioconductor-ivas 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ivygapse shpc-registry automated BioContainers addition for bioconductor-ivygapse gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-iwtomics shpc-registry automated BioContainers addition for bioconductor-iwtomics gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-iyer517 shpc-registry automated BioContainers addition for bioconductor-iyer517
GITHUB quay.io/biocontainers/bioconductor-jaspar2014 shpc-registry automated BioContainers addition for bioconductor-jaspar2014
GITHUB quay.io/biocontainers/bioconductor-jaspar2016 shpc-registry automated BioContainers addition for bioconductor-jaspar2016 wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-jaspar2018 shpc-registry automated BioContainers addition for bioconductor-jaspar2018
GITHUB quay.io/biocontainers/bioconductor-jaspar2020 shpc-registry automated BioContainers addition for bioconductor-jaspar2020
GITHUB quay.io/biocontainers/bioconductor-jaspar2022 singularity registry hpc automated addition for bioconductor-jaspar2022 installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-jaspar2024 singularity registry hpc automated addition for bioconductor-jaspar2024 pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete
GITHUB quay.io/biocontainers/bioconductor-jazaerimetadata.db shpc-registry automated BioContainers addition for bioconductor-jazaerimetadata.db
GITHUB quay.io/biocontainers/bioconductor-jctseqdata shpc-registry automated BioContainers addition for bioconductor-jctseqdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-jmosaics shpc-registry automated BioContainers addition for bioconductor-jmosaics perl5.22.0, c2ph, pstruct, pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, podselect
GITHUB quay.io/biocontainers/bioconductor-joda shpc-registry automated BioContainers addition for bioconductor-joda 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-junctionseq shpc-registry automated BioContainers addition for bioconductor-junctionseq wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-karyoploter shpc-registry automated BioContainers addition for bioconductor-karyoploter wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-katdetectr singularity registry hpc automated addition for bioconductor-katdetectr installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-kboost shpc-registry automated BioContainers addition for bioconductor-kboost
GITHUB quay.io/biocontainers/bioconductor-kcsmart shpc-registry automated BioContainers addition for bioconductor-kcsmart
GITHUB quay.io/biocontainers/bioconductor-kebabs shpc-registry automated BioContainers addition for bioconductor-kebabs
GITHUB quay.io/biocontainers/bioconductor-kegg.db shpc-registry automated BioContainers addition for bioconductor-kegg.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-keggandmetacoredzpathwaysgeo shpc-registry automated BioContainers addition for bioconductor-keggandmetacoredzpathwaysgeo x86_64-conda-linux-gnu-gfortran.bin, c89, c99
GITHUB quay.io/biocontainers/bioconductor-keggdzpathwaysgeo shpc-registry automated BioContainers addition for bioconductor-keggdzpathwaysgeo
GITHUB quay.io/biocontainers/bioconductor-kegggraph shpc-registry automated BioContainers addition for bioconductor-kegggraph
GITHUB quay.io/biocontainers/bioconductor-kegglincs shpc-registry automated BioContainers addition for bioconductor-kegglincs wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-keggorthology shpc-registry automated BioContainers addition for bioconductor-keggorthology
GITHUB quay.io/biocontainers/bioconductor-keggprofile shpc-registry automated BioContainers addition for bioconductor-keggprofile x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-keggrest shpc-registry automated BioContainers addition for bioconductor-keggrest
GITHUB quay.io/biocontainers/bioconductor-kidpack shpc-registry automated BioContainers addition for bioconductor-kidpack
GITHUB quay.io/biocontainers/bioconductor-kimod shpc-registry automated BioContainers addition for bioconductor-kimod
GITHUB quay.io/biocontainers/bioconductor-kinswingr shpc-registry automated BioContainers addition for bioconductor-kinswingr x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-kissde shpc-registry automated BioContainers addition for bioconductor-kissde 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-kmcut singularity registry hpc automated addition for bioconductor-kmcut x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-knowseq shpc-registry automated BioContainers addition for bioconductor-knowseq pandoc
GITHUB quay.io/biocontainers/bioconductor-kodata shpc-registry automated BioContainers addition for bioconductor-kodata wget
GITHUB quay.io/biocontainers/bioconductor-lace shpc-registry automated BioContainers addition for bioconductor-lace
GITHUB quay.io/biocontainers/bioconductor-lapmix shpc-registry automated BioContainers addition for bioconductor-lapmix
GITHUB quay.io/biocontainers/bioconductor-lapointe.db shpc-registry automated BioContainers addition for bioconductor-lapointe.db
GITHUB quay.io/biocontainers/bioconductor-lbe shpc-registry automated BioContainers addition for bioconductor-lbe
GITHUB quay.io/biocontainers/bioconductor-ldblock shpc-registry automated BioContainers addition for bioconductor-ldblock
GITHUB quay.io/biocontainers/bioconductor-lea shpc-registry automated BioContainers addition for bioconductor-lea
GITHUB quay.io/biocontainers/bioconductor-ledpred shpc-registry automated BioContainers addition for bioconductor-ledpred
GITHUB quay.io/biocontainers/bioconductor-leebamviews shpc-registry automated BioContainers addition for bioconductor-leebamviews
GITHUB quay.io/biocontainers/bioconductor-lefser shpc-registry automated BioContainers addition for bioconductor-lefser
GITHUB quay.io/biocontainers/bioconductor-lemur singularity registry hpc automated addition for bioconductor-lemur pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete
GITHUB quay.io/biocontainers/bioconductor-les shpc-registry automated BioContainers addition for bioconductor-les
GITHUB quay.io/biocontainers/bioconductor-leukemiaseset shpc-registry automated BioContainers addition for bioconductor-leukemiaseset
GITHUB quay.io/biocontainers/bioconductor-levi shpc-registry automated BioContainers addition for bioconductor-levi x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-lfa shpc-registry automated BioContainers addition for bioconductor-lfa ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-liebermanaidenhic2009 shpc-registry automated BioContainers addition for bioconductor-liebermanaidenhic2009
GITHUB quay.io/biocontainers/bioconductor-limma shpc-registry automated BioContainers addition for bioconductor-limma
GITHUB quay.io/biocontainers/bioconductor-limmagui shpc-registry automated BioContainers addition for bioconductor-limmagui
GITHUB quay.io/biocontainers/bioconductor-linc shpc-registry automated BioContainers addition for bioconductor-linc udunits2, wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-lineagepulse shpc-registry automated BioContainers addition for bioconductor-lineagepulse 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-lineagespot singularity registry hpc automated addition for bioconductor-lineagespot installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-linkhd shpc-registry automated BioContainers addition for bioconductor-linkhd
GITHUB quay.io/biocontainers/bioconductor-linnorm shpc-registry automated BioContainers addition for bioconductor-linnorm gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-lintind singularity registry hpc automated addition for bioconductor-lintind installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-lionessr shpc-registry automated BioContainers addition for bioconductor-lionessr
GITHUB quay.io/biocontainers/bioconductor-lipidr shpc-registry automated BioContainers addition for bioconductor-lipidr
GITHUB quay.io/biocontainers/bioconductor-liquidassociation shpc-registry automated BioContainers addition for bioconductor-liquidassociation
GITHUB quay.io/biocontainers/bioconductor-lisaclust shpc-registry automated BioContainers addition for bioconductor-lisaclust testepsg, gdal_create, pdfsig, pg_standby, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach
GITHUB quay.io/biocontainers/bioconductor-listeretalbsseq shpc-registry automated BioContainers addition for bioconductor-listeretalbsseq
GITHUB quay.io/biocontainers/bioconductor-lmdme shpc-registry automated BioContainers addition for bioconductor-lmdme
GITHUB quay.io/biocontainers/bioconductor-lmgene shpc-registry automated BioContainers addition for bioconductor-lmgene 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-lobstahs shpc-registry automated BioContainers addition for bioconductor-lobstahs gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp
GITHUB quay.io/biocontainers/bioconductor-loci2path shpc-registry automated BioContainers addition for bioconductor-loci2path 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-logicfs shpc-registry automated BioContainers addition for bioconductor-logicfs 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-logitt shpc-registry automated BioContainers addition for bioconductor-logitt
GITHUB quay.io/biocontainers/bioconductor-logolas shpc-registry automated BioContainers addition for bioconductor-logolas gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-lol shpc-registry automated BioContainers addition for bioconductor-lol gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-lola shpc-registry automated BioContainers addition for bioconductor-lola wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-loomexperiment shpc-registry automated BioContainers addition for bioconductor-loomexperiment x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-lowmaca shpc-registry automated BioContainers addition for bioconductor-lowmaca clustalo
GITHUB quay.io/biocontainers/bioconductor-lowmacaannotation shpc-registry automated BioContainers addition for bioconductor-lowmacaannotation
GITHUB quay.io/biocontainers/bioconductor-lpe shpc-registry automated BioContainers addition for bioconductor-lpe
GITHUB quay.io/biocontainers/bioconductor-lpeadj shpc-registry automated BioContainers addition for bioconductor-lpeadj
GITHUB quay.io/biocontainers/bioconductor-lpnet shpc-registry automated BioContainers addition for bioconductor-lpnet
GITHUB quay.io/biocontainers/bioconductor-lpsymphony shpc-registry automated BioContainers addition for bioconductor-lpsymphony ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-lrbase.ath.eg.db shpc-registry automated BioContainers addition for bioconductor-lrbase.ath.eg.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-lrbase.bta.eg.db shpc-registry automated BioContainers addition for bioconductor-lrbase.bta.eg.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-lrbase.cel.eg.db shpc-registry automated BioContainers addition for bioconductor-lrbase.cel.eg.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-lrbase.dme.eg.db shpc-registry automated BioContainers addition for bioconductor-lrbase.dme.eg.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-lrbase.dre.eg.db shpc-registry automated BioContainers addition for bioconductor-lrbase.dre.eg.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-lrbase.gga.eg.db shpc-registry automated BioContainers addition for bioconductor-lrbase.gga.eg.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-lrbase.hsa.eg.db shpc-registry automated BioContainers addition for bioconductor-lrbase.hsa.eg.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-lrbase.mmu.eg.db shpc-registry automated BioContainers addition for bioconductor-lrbase.mmu.eg.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-lrbase.pab.eg.db shpc-registry automated BioContainers addition for bioconductor-lrbase.pab.eg.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-lrbase.rno.eg.db shpc-registry automated BioContainers addition for bioconductor-lrbase.rno.eg.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-lrbase.ssc.eg.db shpc-registry automated BioContainers addition for bioconductor-lrbase.ssc.eg.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-lrbase.xtr.eg.db shpc-registry automated BioContainers addition for bioconductor-lrbase.xtr.eg.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-lrbasedbi shpc-registry automated BioContainers addition for bioconductor-lrbasedbi
GITHUB quay.io/biocontainers/bioconductor-lrcell shpc-registry automated BioContainers addition for bioconductor-lrcell
GITHUB quay.io/biocontainers/bioconductor-lrcelltypemarkers shpc-registry automated BioContainers addition for bioconductor-lrcelltypemarkers
GITHUB quay.io/biocontainers/bioconductor-lumi shpc-registry automated BioContainers addition for bioconductor-lumi
GITHUB quay.io/biocontainers/bioconductor-lumibarnes shpc-registry automated BioContainers addition for bioconductor-lumibarnes
GITHUB quay.io/biocontainers/bioconductor-lumihumanall.db shpc-registry automated BioContainers addition for bioconductor-lumihumanall.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-lumihumanidmapping shpc-registry automated BioContainers addition for bioconductor-lumihumanidmapping
GITHUB quay.io/biocontainers/bioconductor-lumimouseall.db shpc-registry automated BioContainers addition for bioconductor-lumimouseall.db
GITHUB quay.io/biocontainers/bioconductor-lumimouseidmapping shpc-registry automated BioContainers addition for bioconductor-lumimouseidmapping
GITHUB quay.io/biocontainers/bioconductor-lumiratall.db shpc-registry automated BioContainers addition for bioconductor-lumiratall.db
GITHUB quay.io/biocontainers/bioconductor-lumiratidmapping shpc-registry automated BioContainers addition for bioconductor-lumiratidmapping
GITHUB quay.io/biocontainers/bioconductor-lungcanceracvssccgeo shpc-registry automated BioContainers addition for bioconductor-lungcanceracvssccgeo
GITHUB quay.io/biocontainers/bioconductor-lungcancerlines shpc-registry automated BioContainers addition for bioconductor-lungcancerlines
GITHUB quay.io/biocontainers/bioconductor-lungexpression shpc-registry automated BioContainers addition for bioconductor-lungexpression
GITHUB quay.io/biocontainers/bioconductor-lvsmirna shpc-registry automated BioContainers addition for bioconductor-lvsmirna gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-lydata shpc-registry automated BioContainers addition for bioconductor-lydata wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-lymphoseq shpc-registry automated BioContainers addition for bioconductor-lymphoseq
GITHUB quay.io/biocontainers/bioconductor-lymphoseqdb shpc-registry automated BioContainers addition for bioconductor-lymphoseqdb
GITHUB quay.io/biocontainers/bioconductor-m10kcod.db shpc-registry automated BioContainers addition for bioconductor-m10kcod.db
GITHUB quay.io/biocontainers/bioconductor-m20kcod.db shpc-registry automated BioContainers addition for bioconductor-m20kcod.db
GITHUB quay.io/biocontainers/bioconductor-m3c shpc-registry automated BioContainers addition for bioconductor-m3c f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, gio-launch-desktop
GITHUB quay.io/biocontainers/bioconductor-m3d shpc-registry automated BioContainers addition for bioconductor-m3d 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-m3dexampledata shpc-registry automated BioContainers addition for bioconductor-m3dexampledata wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-m3drop shpc-registry automated BioContainers addition for bioconductor-m3drop c89, c99
GITHUB quay.io/biocontainers/bioconductor-m6aboost shpc-registry automated BioContainers addition for bioconductor-m6aboost
GITHUB quay.io/biocontainers/bioconductor-maanova shpc-registry automated BioContainers addition for bioconductor-maanova
GITHUB quay.io/biocontainers/bioconductor-maaslin2 shpc-registry automated BioContainers addition for bioconductor-maaslin2
GITHUB quay.io/biocontainers/bioconductor-macarron singularity registry hpc automated addition for bioconductor-macarron installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-macat shpc-registry automated BioContainers addition for bioconductor-macat
GITHUB quay.io/biocontainers/bioconductor-macorrplot shpc-registry automated BioContainers addition for bioconductor-macorrplot
GITHUB quay.io/biocontainers/bioconductor-macpet shpc-registry automated BioContainers addition for bioconductor-macpet 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-macrophage shpc-registry automated BioContainers addition for bioconductor-macrophage x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-macsdata shpc-registry automated BioContainers addition for bioconductor-macsdata
GITHUB quay.io/biocontainers/bioconductor-macsquantifyr shpc-registry automated BioContainers addition for bioconductor-macsquantifyr pandoc
GITHUB quay.io/biocontainers/bioconductor-macsr shpc-registry automated BioContainers addition for bioconductor-macsr
GITHUB quay.io/biocontainers/bioconductor-made4 shpc-registry automated BioContainers addition for bioconductor-made4
GITHUB quay.io/biocontainers/bioconductor-madseq shpc-registry automated BioContainers addition for bioconductor-madseq jags, wget
GITHUB quay.io/biocontainers/bioconductor-mafdb.1kgenomes.phase1.grch38 shpc-registry automated BioContainers addition for bioconductor-mafdb.1kgenomes.phase1.grch38 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mafdb.1kgenomes.phase1.hs37d5 shpc-registry automated BioContainers addition for bioconductor-mafdb.1kgenomes.phase1.hs37d5 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mafdb.1kgenomes.phase3.grch38 shpc-registry automated BioContainers addition for bioconductor-mafdb.1kgenomes.phase3.grch38 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mafdb.1kgenomes.phase3.hs37d5 shpc-registry automated BioContainers addition for bioconductor-mafdb.1kgenomes.phase3.hs37d5 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mafdb.esp6500si.v2.ssa137.grch38 shpc-registry automated BioContainers addition for bioconductor-mafdb.esp6500si.v2.ssa137.grch38 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mafdb.esp6500si.v2.ssa137.hs37d5 shpc-registry automated BioContainers addition for bioconductor-mafdb.esp6500si.v2.ssa137.hs37d5 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mafdb.exac.r1.0.grch38 shpc-registry automated BioContainers addition for bioconductor-mafdb.exac.r1.0.grch38 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mafdb.exac.r1.0.hs37d5 shpc-registry automated BioContainers addition for bioconductor-mafdb.exac.r1.0.hs37d5 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mafdb.exac.r1.0.nontcga.grch38 shpc-registry automated BioContainers addition for bioconductor-mafdb.exac.r1.0.nontcga.grch38 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mafdb.exac.r1.0.nontcga.hs37d5 shpc-registry automated BioContainers addition for bioconductor-mafdb.exac.r1.0.nontcga.hs37d5 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mafdb.gnomad.r2.0.1.grch38 shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomad.r2.0.1.grch38 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mafdb.gnomad.r2.0.1.hs37d5 shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomad.r2.0.1.hs37d5 wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mafdb.gnomad.r2.1.grch38 shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomad.r2.1.grch38
GITHUB quay.io/biocontainers/bioconductor-mafdb.gnomad.r2.1.hs37d5 shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomad.r2.1.hs37d5
GITHUB quay.io/biocontainers/bioconductor-mafdb.gnomad.r3.0.grch38 shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomad.r3.0.grch38 x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mafdb.gnomadex.r2.0.1.grch38 shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomadex.r2.0.1.grch38 wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mafdb.gnomadex.r2.0.1.hs37d5 shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomadex.r2.0.1.hs37d5 wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mafdb.gnomadex.r2.1.grch38 shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomadex.r2.1.grch38 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mafdb.gnomadex.r2.1.hs37d5 shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomadex.r2.1.hs37d5 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mafdb.topmed.freeze5.hg19 shpc-registry automated BioContainers addition for bioconductor-mafdb.topmed.freeze5.hg19 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mafdb.topmed.freeze5.hg38 shpc-registry automated BioContainers addition for bioconductor-mafdb.topmed.freeze5.hg38 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mafh5.gnomad.r3.0.grch38 shpc-registry automated BioContainers addition for bioconductor-mafh5.gnomad.r3.0.grch38 x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mafh5.gnomad.v3.1.1.grch38 shpc-registry automated BioContainers addition for bioconductor-mafh5.gnomad.v3.1.1.grch38
GITHUB quay.io/biocontainers/bioconductor-mafh5.gnomad.v3.1.2.grch38 singularity registry hpc automated addition for bioconductor-mafh5.gnomad.v3.1.2.grch38 installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-maftools shpc-registry automated BioContainers addition for bioconductor-maftools x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-magar shpc-registry automated BioContainers addition for bioconductor-magar 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-mageckflute shpc-registry automated BioContainers addition for bioconductor-mageckflute 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-magpie singularity registry hpc automated addition for bioconductor-magpie hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-magrene singularity registry hpc automated addition for bioconductor-magrene
GITHUB quay.io/biocontainers/bioconductor-mai shpc-registry automated BioContainers addition for bioconductor-mai pandoc
GITHUB quay.io/biocontainers/bioconductor-maigespack shpc-registry automated BioContainers addition for bioconductor-maigespack
GITHUB quay.io/biocontainers/bioconductor-mait shpc-registry automated BioContainers addition for bioconductor-mait pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach, applygeo
GITHUB quay.io/biocontainers/bioconductor-maizecdf shpc-registry automated BioContainers addition for bioconductor-maizecdf
GITHUB quay.io/biocontainers/bioconductor-maizeprobe shpc-registry automated BioContainers addition for bioconductor-maizeprobe
GITHUB quay.io/biocontainers/bioconductor-makecdfenv shpc-registry automated BioContainers addition for bioconductor-makecdfenv
GITHUB quay.io/biocontainers/bioconductor-malaria.db0 shpc-registry automated BioContainers addition for bioconductor-malaria.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mammaprintdata shpc-registry automated BioContainers addition for bioconductor-mammaprintdata
GITHUB quay.io/biocontainers/bioconductor-manor shpc-registry automated BioContainers addition for bioconductor-manor
GITHUB quay.io/biocontainers/bioconductor-manta shpc-registry automated BioContainers addition for bioconductor-manta gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mantelcorr shpc-registry automated BioContainers addition for bioconductor-mantelcorr
GITHUB quay.io/biocontainers/bioconductor-mapkl shpc-registry automated BioContainers addition for bioconductor-mapkl
GITHUB quay.io/biocontainers/bioconductor-mapkldata shpc-registry automated BioContainers addition for bioconductor-mapkldata
GITHUB quay.io/biocontainers/bioconductor-mapredictdsc shpc-registry automated BioContainers addition for bioconductor-mapredictdsc
GITHUB quay.io/biocontainers/bioconductor-mapscape shpc-registry automated BioContainers addition for bioconductor-mapscape gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-maqcexpression4plex shpc-registry automated BioContainers addition for bioconductor-maqcexpression4plex
GITHUB quay.io/biocontainers/bioconductor-maqcsubset shpc-registry automated BioContainers addition for bioconductor-maqcsubset
GITHUB quay.io/biocontainers/bioconductor-maqcsubsetafx shpc-registry automated BioContainers addition for bioconductor-maqcsubsetafx x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-maqcsubsetilm shpc-registry automated BioContainers addition for bioconductor-maqcsubsetilm
GITHUB quay.io/biocontainers/bioconductor-marinerdata singularity registry hpc automated addition for bioconductor-marinerdata hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1
GITHUB quay.io/biocontainers/bioconductor-marr shpc-registry automated BioContainers addition for bioconductor-marr
GITHUB quay.io/biocontainers/bioconductor-marray shpc-registry automated BioContainers addition for bioconductor-marray
GITHUB quay.io/biocontainers/bioconductor-martini shpc-registry automated BioContainers addition for bioconductor-martini 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-maser shpc-registry automated BioContainers addition for bioconductor-maser x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-masigpro shpc-registry automated BioContainers addition for bioconductor-masigpro
GITHUB quay.io/biocontainers/bioconductor-maskbad shpc-registry automated BioContainers addition for bioconductor-maskbad
GITHUB quay.io/biocontainers/bioconductor-massarray shpc-registry automated BioContainers addition for bioconductor-massarray
GITHUB quay.io/biocontainers/bioconductor-massir shpc-registry automated BioContainers addition for bioconductor-massir
GITHUB quay.io/biocontainers/bioconductor-massspecwavelet shpc-registry automated BioContainers addition for bioconductor-massspecwavelet
GITHUB quay.io/biocontainers/bioconductor-mast shpc-registry automated BioContainers addition for bioconductor-mast wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mastr singularity registry hpc automated addition for bioconductor-mastr geosop, geos-config, hb-info, f2py3.11, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1
GITHUB quay.io/biocontainers/bioconductor-matchbox shpc-registry automated BioContainers addition for bioconductor-matchbox
GITHUB quay.io/biocontainers/bioconductor-matrixgenerics shpc-registry automated BioContainers addition for bioconductor-matrixgenerics
GITHUB quay.io/biocontainers/bioconductor-matrixqcvis shpc-registry automated BioContainers addition for bioconductor-matrixqcvis pandoc
GITHUB quay.io/biocontainers/bioconductor-matrixrider shpc-registry automated BioContainers addition for bioconductor-matrixrider
GITHUB quay.io/biocontainers/bioconductor-matter shpc-registry automated BioContainers addition for bioconductor-matter gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-maxcontrastprojection shpc-registry automated BioContainers addition for bioconductor-maxcontrastprojection mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, mpifort, mpic++, mpicc
GITHUB quay.io/biocontainers/bioconductor-mbamethyl shpc-registry automated BioContainers addition for bioconductor-mbamethyl
GITHUB quay.io/biocontainers/bioconductor-mbased shpc-registry automated BioContainers addition for bioconductor-mbased
GITHUB quay.io/biocontainers/bioconductor-mbcb shpc-registry automated BioContainers addition for bioconductor-mbcb
GITHUB quay.io/biocontainers/bioconductor-mbecs singularity registry hpc automated addition for bioconductor-mbecs installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, pandoc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-mbkmeans shpc-registry automated BioContainers addition for bioconductor-mbkmeans x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mbomic singularity registry hpc automated addition for bioconductor-mbomic installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-mbpcr shpc-registry automated BioContainers addition for bioconductor-mbpcr
GITHUB quay.io/biocontainers/bioconductor-mbqn shpc-registry automated BioContainers addition for bioconductor-mbqn
GITHUB quay.io/biocontainers/bioconductor-mbqtl singularity registry hpc automated addition for bioconductor-mbqtl hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-mbttest shpc-registry automated BioContainers addition for bioconductor-mbttest ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-mcagui shpc-registry automated BioContainers addition for bioconductor-mcagui gtk-builder-convert, gtk-demo, gtk-query-immodules-2.0, gtk-update-icon-cache, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mcbiclust shpc-registry automated BioContainers addition for bioconductor-mcbiclust gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mcrestimate shpc-registry automated BioContainers addition for bioconductor-mcrestimate gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mcsea shpc-registry automated BioContainers addition for bioconductor-mcsea 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mcseadata shpc-registry automated BioContainers addition for bioconductor-mcseadata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mcsurvdata shpc-registry automated BioContainers addition for bioconductor-mcsurvdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mdgsa shpc-registry automated BioContainers addition for bioconductor-mdgsa bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-mdp shpc-registry automated BioContainers addition for bioconductor-mdp 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mdqc shpc-registry automated BioContainers addition for bioconductor-mdqc
GITHUB quay.io/biocontainers/bioconductor-mdts shpc-registry automated BioContainers addition for bioconductor-mdts 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-meal shpc-registry automated BioContainers addition for bioconductor-meal f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-measurementerror.cor shpc-registry automated BioContainers addition for bioconductor-measurementerror.cor
GITHUB quay.io/biocontainers/bioconductor-meat shpc-registry automated BioContainers addition for bioconductor-meat
GITHUB quay.io/biocontainers/bioconductor-meb shpc-registry automated BioContainers addition for bioconductor-meb
GITHUB quay.io/biocontainers/bioconductor-medicagocdf shpc-registry automated BioContainers addition for bioconductor-medicagocdf
GITHUB quay.io/biocontainers/bioconductor-medicagoprobe shpc-registry automated BioContainers addition for bioconductor-medicagoprobe
GITHUB quay.io/biocontainers/bioconductor-medips shpc-registry automated BioContainers addition for bioconductor-medips
GITHUB quay.io/biocontainers/bioconductor-medipsdata shpc-registry automated BioContainers addition for bioconductor-medipsdata
GITHUB quay.io/biocontainers/bioconductor-medme shpc-registry automated BioContainers addition for bioconductor-medme f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-meebodata shpc-registry automated BioContainers addition for bioconductor-meebodata
GITHUB quay.io/biocontainers/bioconductor-megadepth shpc-registry automated BioContainers addition for bioconductor-megadepth
GITHUB quay.io/biocontainers/bioconductor-meigor shpc-registry automated BioContainers addition for bioconductor-meigor diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts
GITHUB quay.io/biocontainers/bioconductor-melissa shpc-registry automated BioContainers addition for bioconductor-melissa pandoc, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-memes shpc-registry automated BioContainers addition for bioconductor-memes
GITHUB quay.io/biocontainers/bioconductor-merfishdata singularity registry hpc automated addition for bioconductor-merfishdata x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500
GITHUB quay.io/biocontainers/bioconductor-mergemaid shpc-registry automated BioContainers addition for bioconductor-mergemaid 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mergeomics shpc-registry automated BioContainers addition for bioconductor-mergeomics ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-meshdbi shpc-registry automated BioContainers addition for bioconductor-meshdbi
GITHUB quay.io/biocontainers/bioconductor-meshes shpc-registry automated BioContainers addition for bioconductor-meshes udunits2, wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-meshr shpc-registry automated BioContainers addition for bioconductor-meshr pandoc
GITHUB quay.io/biocontainers/bioconductor-meshsim shpc-registry automated BioContainers addition for bioconductor-meshsim bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-meskit shpc-registry automated BioContainers addition for bioconductor-meskit
GITHUB quay.io/biocontainers/bioconductor-messina shpc-registry automated BioContainers addition for bioconductor-messina
GITHUB quay.io/biocontainers/bioconductor-metaarray shpc-registry automated BioContainers addition for bioconductor-metaarray 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-metab shpc-registry automated BioContainers addition for bioconductor-metab zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-metabcombiner shpc-registry automated BioContainers addition for bioconductor-metabcombiner
GITHUB quay.io/biocontainers/bioconductor-metabinr singularity registry hpc automated addition for bioconductor-metabinr jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap, jps
GITHUB quay.io/biocontainers/bioconductor-metaboannotation singularity registry hpc automated addition for bioconductor-metaboannotation installBiocDataPackage.sh, tomlq, xq, yq, rsvg-convert, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-metabocoreutils shpc-registry automated BioContainers addition for bioconductor-metabocoreutils
GITHUB quay.io/biocontainers/bioconductor-metaboliteidmapping shpc-registry automated BioContainers addition for bioconductor-metaboliteidmapping
GITHUB quay.io/biocontainers/bioconductor-metabolomicsworkbenchr shpc-registry automated BioContainers addition for bioconductor-metabolomicsworkbenchr
GITHUB quay.io/biocontainers/bioconductor-metabomxtr shpc-registry automated BioContainers addition for bioconductor-metabomxtr
GITHUB quay.io/biocontainers/bioconductor-metabosignal shpc-registry automated BioContainers addition for bioconductor-metabosignal wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-metacca shpc-registry automated BioContainers addition for bioconductor-metacca
GITHUB quay.io/biocontainers/bioconductor-metacyto shpc-registry automated BioContainers addition for bioconductor-metacyto gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-metagene shpc-registry automated BioContainers addition for bioconductor-metagene
GITHUB quay.io/biocontainers/bioconductor-metagene2 shpc-registry automated BioContainers addition for bioconductor-metagene2 x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-metagenomefeatures shpc-registry automated BioContainers addition for bioconductor-metagenomefeatures 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-metagenomeseq shpc-registry automated BioContainers addition for bioconductor-metagenomeseq
GITHUB quay.io/biocontainers/bioconductor-metagxbreast shpc-registry automated BioContainers addition for bioconductor-metagxbreast 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-metagxovarian shpc-registry automated BioContainers addition for bioconductor-metagxovarian 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-metagxpancreas shpc-registry automated BioContainers addition for bioconductor-metagxpancreas 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-metahdep shpc-registry automated BioContainers addition for bioconductor-metahdep
GITHUB quay.io/biocontainers/bioconductor-metams shpc-registry automated BioContainers addition for bioconductor-metams pngcp, nc-config, nccopy, ncdump, ncgen, ncgen3, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr
GITHUB quay.io/biocontainers/bioconductor-metamsdata shpc-registry automated BioContainers addition for bioconductor-metamsdata
GITHUB quay.io/biocontainers/bioconductor-metaneighbor shpc-registry automated BioContainers addition for bioconductor-metaneighbor 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-metaphor singularity registry hpc automated addition for bioconductor-metaphor Cytoscape, cytoscape.sh, gen_vmoptions.sh, jpackage, curve_keygen, cups-config, ippeveprinter, ipptool, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, jfr, aserver, jdeprscan, jhsdb, jimage, jlink
GITHUB quay.io/biocontainers/bioconductor-metapod shpc-registry automated BioContainers addition for bioconductor-metapod
GITHUB quay.io/biocontainers/bioconductor-metapone shpc-registry automated BioContainers addition for bioconductor-metapone
GITHUB quay.io/biocontainers/bioconductor-metascope singularity registry hpc automated addition for bioconductor-metascope hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1
GITHUB quay.io/biocontainers/bioconductor-metaseq shpc-registry automated BioContainers addition for bioconductor-metaseq
GITHUB quay.io/biocontainers/bioconductor-metaseqr shpc-registry automated BioContainers addition for bioconductor-metaseqr
GITHUB quay.io/biocontainers/bioconductor-metaseqr2 shpc-registry automated BioContainers addition for bioconductor-metaseqr2 pandoc-server, pandoc
GITHUB quay.io/biocontainers/bioconductor-metavizr shpc-registry automated BioContainers addition for bioconductor-metavizr gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-metavolcanor shpc-registry automated BioContainers addition for bioconductor-metavolcanor
GITHUB quay.io/biocontainers/bioconductor-metcirc shpc-registry automated BioContainers addition for bioconductor-metcirc tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-methcp shpc-registry automated BioContainers addition for bioconductor-methcp
GITHUB quay.io/biocontainers/bioconductor-methimpute shpc-registry automated BioContainers addition for bioconductor-methimpute gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-methinheritsim shpc-registry automated BioContainers addition for bioconductor-methinheritsim gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-methped shpc-registry automated BioContainers addition for bioconductor-methped ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-methreg shpc-registry automated BioContainers addition for bioconductor-methreg pandoc
GITHUB quay.io/biocontainers/bioconductor-methrix shpc-registry automated BioContainers addition for bioconductor-methrix
GITHUB quay.io/biocontainers/bioconductor-methtargetedngs shpc-registry automated BioContainers addition for bioconductor-methtargetedngs bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-methvisual shpc-registry automated BioContainers addition for bioconductor-methvisual 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-methyanalysis shpc-registry automated BioContainers addition for bioconductor-methyanalysis 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin, c89, c99
GITHUB quay.io/biocontainers/bioconductor-methylaid shpc-registry automated BioContainers addition for bioconductor-methylaid
GITHUB quay.io/biocontainers/bioconductor-methylaiddata shpc-registry automated BioContainers addition for bioconductor-methylaiddata
GITHUB quay.io/biocontainers/bioconductor-methylcc shpc-registry automated BioContainers addition for bioconductor-methylcc x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-methylclock shpc-registry automated BioContainers addition for bioconductor-methylclock git2_cli, pandoc-server, pandoc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-methylclockdata shpc-registry automated BioContainers addition for bioconductor-methylclockdata
GITHUB quay.io/biocontainers/bioconductor-methylgsa shpc-registry automated BioContainers addition for bioconductor-methylgsa x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-methylimp2 singularity registry hpc automated addition for bioconductor-methylimp2 x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-methylinheritance shpc-registry automated BioContainers addition for bioconductor-methylinheritance gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-methylkit shpc-registry automated BioContainers addition for bioconductor-methylkit wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-methylmix shpc-registry automated BioContainers addition for bioconductor-methylmix
GITHUB quay.io/biocontainers/bioconductor-methylmnm shpc-registry automated BioContainers addition for bioconductor-methylmnm
GITHUB quay.io/biocontainers/bioconductor-methylpipe shpc-registry automated BioContainers addition for bioconductor-methylpipe
GITHUB quay.io/biocontainers/bioconductor-methylscaper shpc-registry automated BioContainers addition for bioconductor-methylscaper
GITHUB quay.io/biocontainers/bioconductor-methylseekr shpc-registry automated BioContainers addition for bioconductor-methylseekr
GITHUB quay.io/biocontainers/bioconductor-methylseqdata shpc-registry automated BioContainers addition for bioconductor-methylseqdata
GITHUB quay.io/biocontainers/bioconductor-methylsig shpc-registry automated BioContainers addition for bioconductor-methylsig
GITHUB quay.io/biocontainers/bioconductor-methylumi shpc-registry automated BioContainers addition for bioconductor-methylumi
GITHUB quay.io/biocontainers/bioconductor-methyvim shpc-registry automated BioContainers addition for bioconductor-methyvim gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-methyvimdata shpc-registry automated BioContainers addition for bioconductor-methyvimdata gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-metid shpc-registry automated BioContainers addition for bioconductor-metid rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-metnet shpc-registry automated BioContainers addition for bioconductor-metnet x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mfa shpc-registry automated BioContainers addition for bioconductor-mfa gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mfuzz shpc-registry automated BioContainers addition for bioconductor-mfuzz
GITHUB quay.io/biocontainers/bioconductor-mgfm shpc-registry automated BioContainers addition for bioconductor-mgfm
GITHUB quay.io/biocontainers/bioconductor-mgfr shpc-registry automated BioContainers addition for bioconductor-mgfr c89, c99
GITHUB quay.io/biocontainers/bioconductor-mgnifyr singularity registry hpc automated addition for bioconductor-mgnifyr pandoc-lua, x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, pandoc-server, numpy-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-mgsa shpc-registry automated BioContainers addition for bioconductor-mgsa
GITHUB quay.io/biocontainers/bioconductor-mgu74a.db shpc-registry automated BioContainers addition for bioconductor-mgu74a.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mgu74acdf shpc-registry automated BioContainers addition for bioconductor-mgu74acdf
GITHUB quay.io/biocontainers/bioconductor-mgu74aprobe shpc-registry automated BioContainers addition for bioconductor-mgu74aprobe
GITHUB quay.io/biocontainers/bioconductor-mgu74av2.db shpc-registry automated BioContainers addition for bioconductor-mgu74av2.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mgu74av2cdf shpc-registry automated BioContainers addition for bioconductor-mgu74av2cdf
GITHUB quay.io/biocontainers/bioconductor-mgu74av2probe shpc-registry automated BioContainers addition for bioconductor-mgu74av2probe
GITHUB quay.io/biocontainers/bioconductor-mgu74b.db shpc-registry automated BioContainers addition for bioconductor-mgu74b.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mgu74bcdf shpc-registry automated BioContainers addition for bioconductor-mgu74bcdf
GITHUB quay.io/biocontainers/bioconductor-mgu74bprobe shpc-registry automated BioContainers addition for bioconductor-mgu74bprobe
GITHUB quay.io/biocontainers/bioconductor-mgu74bv2.db shpc-registry automated BioContainers addition for bioconductor-mgu74bv2.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mgu74bv2cdf shpc-registry automated BioContainers addition for bioconductor-mgu74bv2cdf
GITHUB quay.io/biocontainers/bioconductor-mgu74bv2probe shpc-registry automated BioContainers addition for bioconductor-mgu74bv2probe
GITHUB quay.io/biocontainers/bioconductor-mgu74c.db shpc-registry automated BioContainers addition for bioconductor-mgu74c.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mgu74ccdf shpc-registry automated BioContainers addition for bioconductor-mgu74ccdf
GITHUB quay.io/biocontainers/bioconductor-mgu74cprobe shpc-registry automated BioContainers addition for bioconductor-mgu74cprobe x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mgu74cv2.db shpc-registry automated BioContainers addition for bioconductor-mgu74cv2.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mgu74cv2cdf shpc-registry automated BioContainers addition for bioconductor-mgu74cv2cdf
GITHUB quay.io/biocontainers/bioconductor-mgu74cv2probe shpc-registry automated BioContainers addition for bioconductor-mgu74cv2probe
GITHUB quay.io/biocontainers/bioconductor-mguatlas5k.db shpc-registry automated BioContainers addition for bioconductor-mguatlas5k.db
GITHUB quay.io/biocontainers/bioconductor-mgug4104a.db shpc-registry automated BioContainers addition for bioconductor-mgug4104a.db
GITHUB quay.io/biocontainers/bioconductor-mgug4120a.db shpc-registry automated BioContainers addition for bioconductor-mgug4120a.db
GITHUB quay.io/biocontainers/bioconductor-mgug4121a.db shpc-registry automated BioContainers addition for bioconductor-mgug4121a.db
GITHUB quay.io/biocontainers/bioconductor-mgug4122a.db shpc-registry automated BioContainers addition for bioconductor-mgug4122a.db 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mi16cod.db shpc-registry automated BioContainers addition for bioconductor-mi16cod.db
GITHUB quay.io/biocontainers/bioconductor-mia shpc-registry automated BioContainers addition for bioconductor-mia
GITHUB quay.io/biocontainers/bioconductor-miasim shpc-registry automated BioContainers addition for bioconductor-miasim
GITHUB quay.io/biocontainers/bioconductor-miaviz shpc-registry automated BioContainers addition for bioconductor-miaviz
GITHUB quay.io/biocontainers/bioconductor-michip shpc-registry automated BioContainers addition for bioconductor-michip
GITHUB quay.io/biocontainers/bioconductor-microbiome shpc-registry automated BioContainers addition for bioconductor-microbiome gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-microbiomebenchmarkdata singularity registry hpc automated addition for bioconductor-microbiomebenchmarkdata installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-microbiomedasim shpc-registry automated BioContainers addition for bioconductor-microbiomedasim
GITHUB quay.io/biocontainers/bioconductor-microbiomedatasets shpc-registry automated BioContainers addition for bioconductor-microbiomedatasets
GITHUB quay.io/biocontainers/bioconductor-microbiomeexplorer shpc-registry automated BioContainers addition for bioconductor-microbiomeexplorer pandoc
GITHUB quay.io/biocontainers/bioconductor-microbiomemarker shpc-registry automated BioContainers addition for bioconductor-microbiomemarker
GITHUB quay.io/biocontainers/bioconductor-microbiomeprofiler shpc-registry automated BioContainers addition for bioconductor-microbiomeprofiler
GITHUB quay.io/biocontainers/bioconductor-microbiotaprocess shpc-registry automated BioContainers addition for bioconductor-microbiotaprocess
GITHUB quay.io/biocontainers/bioconductor-microrna shpc-registry automated BioContainers addition for bioconductor-microrna
GITHUB quay.io/biocontainers/bioconductor-micrornaome shpc-registry automated BioContainers addition for bioconductor-micrornaome gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-microstasis singularity registry hpc automated addition for bioconductor-microstasis hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-midashla shpc-registry automated BioContainers addition for bioconductor-midashla pandoc
GITHUB quay.io/biocontainers/bioconductor-migsa shpc-registry automated BioContainers addition for bioconductor-migsa gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-migsadata shpc-registry automated BioContainers addition for bioconductor-migsadata gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-milor shpc-registry automated BioContainers addition for bioconductor-milor
GITHUB quay.io/biocontainers/bioconductor-mimager shpc-registry automated BioContainers addition for bioconductor-mimager gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mimosa shpc-registry automated BioContainers addition for bioconductor-mimosa
GITHUB quay.io/biocontainers/bioconductor-mina shpc-registry automated BioContainers addition for bioconductor-mina
GITHUB quay.io/biocontainers/bioconductor-mineica shpc-registry automated BioContainers addition for bioconductor-mineica
GITHUB quay.io/biocontainers/bioconductor-minet shpc-registry automated BioContainers addition for bioconductor-minet
GITHUB quay.io/biocontainers/bioconductor-minfi shpc-registry automated BioContainers addition for bioconductor-minfi
GITHUB quay.io/biocontainers/bioconductor-minfidata shpc-registry automated BioContainers addition for bioconductor-minfidata
GITHUB quay.io/biocontainers/bioconductor-minfidataepic shpc-registry automated BioContainers addition for bioconductor-minfidataepic wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-minimumdistance shpc-registry automated BioContainers addition for bioconductor-minimumdistance
GITHUB quay.io/biocontainers/bioconductor-minionsummarydata shpc-registry automated BioContainers addition for bioconductor-minionsummarydata
GITHUB quay.io/biocontainers/bioconductor-mipp shpc-registry automated BioContainers addition for bioconductor-mipp
GITHUB quay.io/biocontainers/bioconductor-miqc shpc-registry automated BioContainers addition for bioconductor-miqc
GITHUB quay.io/biocontainers/bioconductor-mira shpc-registry automated BioContainers addition for bioconductor-mira gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mirage shpc-registry automated BioContainers addition for bioconductor-mirage
GITHUB quay.io/biocontainers/bioconductor-mirbase.db shpc-registry automated BioContainers addition for bioconductor-mirbase.db
GITHUB quay.io/biocontainers/bioconductor-mirbaseconverter shpc-registry automated BioContainers addition for bioconductor-mirbaseconverter gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mirbaseversions.db shpc-registry automated BioContainers addition for bioconductor-mirbaseversions.db
GITHUB quay.io/biocontainers/bioconductor-mircomp shpc-registry automated BioContainers addition for bioconductor-mircomp
GITHUB quay.io/biocontainers/bioconductor-mircompdata shpc-registry automated BioContainers addition for bioconductor-mircompdata
GITHUB quay.io/biocontainers/bioconductor-mirintegrator shpc-registry automated BioContainers addition for bioconductor-mirintegrator wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-mirlab shpc-registry automated BioContainers addition for bioconductor-mirlab
GITHUB quay.io/biocontainers/bioconductor-mirmine shpc-registry automated BioContainers addition for bioconductor-mirmine gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mirna102xgaincdf shpc-registry automated BioContainers addition for bioconductor-mirna102xgaincdf
GITHUB quay.io/biocontainers/bioconductor-mirna10cdf shpc-registry automated BioContainers addition for bioconductor-mirna10cdf
GITHUB quay.io/biocontainers/bioconductor-mirna10probe shpc-registry automated BioContainers addition for bioconductor-mirna10probe
GITHUB quay.io/biocontainers/bioconductor-mirna20cdf shpc-registry automated BioContainers addition for bioconductor-mirna20cdf
GITHUB quay.io/biocontainers/bioconductor-mirnameconverter shpc-registry automated BioContainers addition for bioconductor-mirnameconverter wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-mirnapath shpc-registry automated BioContainers addition for bioconductor-mirnapath
GITHUB quay.io/biocontainers/bioconductor-mirnatap.db shpc-registry automated BioContainers addition for bioconductor-mirnatap.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mirnatap shpc-registry automated BioContainers addition for bioconductor-mirnatap
GITHUB quay.io/biocontainers/bioconductor-mirnatarget shpc-registry automated BioContainers addition for bioconductor-mirnatarget
GITHUB quay.io/biocontainers/bioconductor-mirsm shpc-registry automated BioContainers addition for bioconductor-mirsm jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, f2py3.9
GITHUB quay.io/biocontainers/bioconductor-mirsponge shpc-registry automated BioContainers addition for bioconductor-mirsponge udunits2, wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mirsponger shpc-registry automated BioContainers addition for bioconductor-mirsponger glpsol
GITHUB quay.io/biocontainers/bioconductor-mirsynergy shpc-registry automated BioContainers addition for bioconductor-mirsynergy 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mirtarrnaseq shpc-registry automated BioContainers addition for bioconductor-mirtarrnaseq
GITHUB quay.io/biocontainers/bioconductor-missmethyl shpc-registry automated BioContainers addition for bioconductor-missmethyl x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-missrows shpc-registry automated BioContainers addition for bioconductor-missrows 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mistyr shpc-registry automated BioContainers addition for bioconductor-mistyr
GITHUB quay.io/biocontainers/bioconductor-mitch shpc-registry automated BioContainers addition for bioconductor-mitch pandoc
GITHUB quay.io/biocontainers/bioconductor-mitoclone2 shpc-registry automated BioContainers addition for bioconductor-mitoclone2
GITHUB quay.io/biocontainers/bioconductor-mitoode shpc-registry automated BioContainers addition for bioconductor-mitoode 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mitoodedata shpc-registry automated BioContainers addition for bioconductor-mitoodedata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mixomics shpc-registry automated BioContainers addition for bioconductor-mixomics f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, gio-launch-desktop
GITHUB quay.io/biocontainers/bioconductor-mlinterfaces shpc-registry automated BioContainers addition for bioconductor-mlinterfaces glpsol
GITHUB quay.io/biocontainers/bioconductor-mlm4omics shpc-registry automated BioContainers addition for bioconductor-mlm4omics gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mlp shpc-registry automated BioContainers addition for bioconductor-mlp
GITHUB quay.io/biocontainers/bioconductor-mlseq shpc-registry automated BioContainers addition for bioconductor-mlseq x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mm24kresogen.db shpc-registry automated BioContainers addition for bioconductor-mm24kresogen.db
GITHUB quay.io/biocontainers/bioconductor-mmagilentdesign026655.db shpc-registry automated BioContainers addition for bioconductor-mmagilentdesign026655.db
GITHUB quay.io/biocontainers/bioconductor-mmappr2 shpc-registry automated BioContainers addition for bioconductor-mmappr2
GITHUB quay.io/biocontainers/bioconductor-mmappr2data shpc-registry automated BioContainers addition for bioconductor-mmappr2data
GITHUB quay.io/biocontainers/bioconductor-mmdiff shpc-registry automated BioContainers addition for bioconductor-mmdiff
GITHUB quay.io/biocontainers/bioconductor-mmdiff2 shpc-registry automated BioContainers addition for bioconductor-mmdiff2 wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-mmdiffbamsubset shpc-registry automated BioContainers addition for bioconductor-mmdiffbamsubset
GITHUB quay.io/biocontainers/bioconductor-mmnet shpc-registry automated BioContainers addition for bioconductor-mmnet bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-mmpalatemirna shpc-registry automated BioContainers addition for bioconductor-mmpalatemirna 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mmuphin shpc-registry automated BioContainers addition for bioconductor-mmuphin
GITHUB quay.io/biocontainers/bioconductor-mnem shpc-registry automated BioContainers addition for bioconductor-mnem x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-moanin shpc-registry automated BioContainers addition for bioconductor-moanin
GITHUB quay.io/biocontainers/bioconductor-mobilitytransformr singularity registry hpc automated addition for bioconductor-mobilitytransformr zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff, hdp, hrepack, jpeg2hdf, paltohdf
GITHUB quay.io/biocontainers/bioconductor-moda shpc-registry automated BioContainers addition for bioconductor-moda wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-modcon shpc-registry automated BioContainers addition for bioconductor-modcon perl5.32.1, streamzip
GITHUB quay.io/biocontainers/bioconductor-modstrings shpc-registry automated BioContainers addition for bioconductor-modstrings x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-moe430a.db shpc-registry automated BioContainers addition for bioconductor-moe430a.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-moe430acdf shpc-registry automated BioContainers addition for bioconductor-moe430acdf
GITHUB quay.io/biocontainers/bioconductor-moe430aprobe shpc-registry automated BioContainers addition for bioconductor-moe430aprobe
GITHUB quay.io/biocontainers/bioconductor-moe430b.db shpc-registry automated BioContainers addition for bioconductor-moe430b.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-moe430bcdf shpc-registry automated BioContainers addition for bioconductor-moe430bcdf
GITHUB quay.io/biocontainers/bioconductor-moe430bprobe shpc-registry automated BioContainers addition for bioconductor-moe430bprobe
GITHUB quay.io/biocontainers/bioconductor-moex10stprobeset.db shpc-registry automated BioContainers addition for bioconductor-moex10stprobeset.db
GITHUB quay.io/biocontainers/bioconductor-moex10sttranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-moex10sttranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-moexexonprobesetlocation shpc-registry automated BioContainers addition for bioconductor-moexexonprobesetlocation
GITHUB quay.io/biocontainers/bioconductor-mofa shpc-registry automated BioContainers addition for bioconductor-mofa
GITHUB quay.io/biocontainers/bioconductor-mofa2 shpc-registry automated BioContainers addition for bioconductor-mofa2
GITHUB quay.io/biocontainers/bioconductor-mofadata shpc-registry automated BioContainers addition for bioconductor-mofadata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mogamun shpc-registry automated BioContainers addition for bioconductor-mogamun Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage
GITHUB quay.io/biocontainers/bioconductor-mogene.1.0.st.v1frmavecs shpc-registry automated BioContainers addition for bioconductor-mogene.1.0.st.v1frmavecs
GITHUB quay.io/biocontainers/bioconductor-mogene10stprobeset.db shpc-registry automated BioContainers addition for bioconductor-mogene10stprobeset.db
GITHUB quay.io/biocontainers/bioconductor-mogene10sttranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-mogene10sttranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-mogene10stv1cdf shpc-registry automated BioContainers addition for bioconductor-mogene10stv1cdf
GITHUB quay.io/biocontainers/bioconductor-mogene10stv1probe shpc-registry automated BioContainers addition for bioconductor-mogene10stv1probe
GITHUB quay.io/biocontainers/bioconductor-mogene11stprobeset.db shpc-registry automated BioContainers addition for bioconductor-mogene11stprobeset.db
GITHUB quay.io/biocontainers/bioconductor-mogene11sttranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-mogene11sttranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-mogene20stprobeset.db shpc-registry automated BioContainers addition for bioconductor-mogene20stprobeset.db
GITHUB quay.io/biocontainers/bioconductor-mogene20sttranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-mogene20sttranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-mogene21stprobeset.db shpc-registry automated BioContainers addition for bioconductor-mogene21stprobeset.db
GITHUB quay.io/biocontainers/bioconductor-mogene21sttranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-mogene21sttranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-mogsa shpc-registry automated BioContainers addition for bioconductor-mogsa
GITHUB quay.io/biocontainers/bioconductor-moleculeexperiment singularity registry hpc automated addition for bioconductor-moleculeexperiment sozip, h5delete, pg_amcheck, bsdcat, bsdcpio, bsdtar, pdfsig, gdal_create, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, gdal-config, gdal_contour, gdal_grid, gdal_rasterize
GITHUB quay.io/biocontainers/bioconductor-moma shpc-registry automated BioContainers addition for bioconductor-moma
GITHUB quay.io/biocontainers/bioconductor-monalisa shpc-registry automated BioContainers addition for bioconductor-monalisa
GITHUB quay.io/biocontainers/bioconductor-monocle shpc-registry automated BioContainers addition for bioconductor-monocle wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-moonlight2r singularity registry hpc automated addition for bioconductor-moonlight2r pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-moonlightr shpc-registry automated BioContainers addition for bioconductor-moonlightr
GITHUB quay.io/biocontainers/bioconductor-mops shpc-registry automated BioContainers addition for bioconductor-mops 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mosaics shpc-registry automated BioContainers addition for bioconductor-mosaics perl5.22.0, c2ph, pstruct, pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, podselect
GITHUB quay.io/biocontainers/bioconductor-mosaicsexample shpc-registry automated BioContainers addition for bioconductor-mosaicsexample
GITHUB quay.io/biocontainers/bioconductor-mosbi shpc-registry automated BioContainers addition for bioconductor-mosbi glpsol
GITHUB quay.io/biocontainers/bioconductor-mosim shpc-registry automated BioContainers addition for bioconductor-mosim
GITHUB quay.io/biocontainers/bioconductor-motif2site singularity registry hpc automated addition for bioconductor-motif2site installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-motifbreakr shpc-registry automated BioContainers addition for bioconductor-motifbreakr
GITHUB quay.io/biocontainers/bioconductor-motifcounter shpc-registry automated BioContainers addition for bioconductor-motifcounter gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-motifdb shpc-registry automated BioContainers addition for bioconductor-motifdb
GITHUB quay.io/biocontainers/bioconductor-motifmatchr shpc-registry automated BioContainers addition for bioconductor-motifmatchr gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-motifrg shpc-registry automated BioContainers addition for bioconductor-motifrg 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-motifstack shpc-registry automated BioContainers addition for bioconductor-motifstack
GITHUB quay.io/biocontainers/bioconductor-motiv shpc-registry automated BioContainers addition for bioconductor-motiv 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mouse.db0 shpc-registry automated BioContainers addition for bioconductor-mouse.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mouse4302.db shpc-registry automated BioContainers addition for bioconductor-mouse4302.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mouse4302barcodevecs shpc-registry automated BioContainers addition for bioconductor-mouse4302barcodevecs
GITHUB quay.io/biocontainers/bioconductor-mouse4302cdf shpc-registry automated BioContainers addition for bioconductor-mouse4302cdf
GITHUB quay.io/biocontainers/bioconductor-mouse4302frmavecs shpc-registry automated BioContainers addition for bioconductor-mouse4302frmavecs
GITHUB quay.io/biocontainers/bioconductor-mouse4302probe shpc-registry automated BioContainers addition for bioconductor-mouse4302probe
GITHUB quay.io/biocontainers/bioconductor-mouse430a2.db shpc-registry automated BioContainers addition for bioconductor-mouse430a2.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mouse430a2cdf shpc-registry automated BioContainers addition for bioconductor-mouse430a2cdf
GITHUB quay.io/biocontainers/bioconductor-mouse430a2frmavecs shpc-registry automated BioContainers addition for bioconductor-mouse430a2frmavecs
GITHUB quay.io/biocontainers/bioconductor-mouse430a2probe shpc-registry automated BioContainers addition for bioconductor-mouse430a2probe
GITHUB quay.io/biocontainers/bioconductor-mousechrloc shpc-registry automated BioContainers addition for bioconductor-mousechrloc
GITHUB quay.io/biocontainers/bioconductor-mousefm shpc-registry automated BioContainers addition for bioconductor-mousefm x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mousegastrulationdata shpc-registry automated BioContainers addition for bioconductor-mousegastrulationdata x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify
GITHUB quay.io/biocontainers/bioconductor-mousethymusageing shpc-registry automated BioContainers addition for bioconductor-mousethymusageing
GITHUB quay.io/biocontainers/bioconductor-mpac singularity registry hpc automated addition for bioconductor-mpac x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-mpedbarray.db shpc-registry automated BioContainers addition for bioconductor-mpedbarray.db
GITHUB quay.io/biocontainers/bioconductor-mpfe shpc-registry automated BioContainers addition for bioconductor-mpfe
GITHUB quay.io/biocontainers/bioconductor-mpo.db singularity registry hpc automated addition for bioconductor-mpo.db pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-mpra shpc-registry automated BioContainers addition for bioconductor-mpra gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mpranalyze shpc-registry automated BioContainers addition for bioconductor-mpranalyze x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mqmetrics shpc-registry automated BioContainers addition for bioconductor-mqmetrics pandoc
GITHUB quay.io/biocontainers/bioconductor-mqtl.nmr shpc-registry automated BioContainers addition for bioconductor-mqtl.nmr
GITHUB quay.io/biocontainers/bioconductor-msa shpc-registry automated BioContainers addition for bioconductor-msa
GITHUB quay.io/biocontainers/bioconductor-msa2dist singularity registry hpc automated addition for bioconductor-msa2dist installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-msbackendmassbank shpc-registry automated BioContainers addition for bioconductor-msbackendmassbank
GITHUB quay.io/biocontainers/bioconductor-msbackendmgf shpc-registry automated BioContainers addition for bioconductor-msbackendmgf
GITHUB quay.io/biocontainers/bioconductor-msbackendmsp singularity registry hpc automated addition for bioconductor-msbackendmsp
GITHUB quay.io/biocontainers/bioconductor-msbackendrawfilereader shpc-registry automated BioContainers addition for bioconductor-msbackendrawfilereader aprofutil, csc, csi, illinkanalyzer, mono-hang-watchdog, vbc, mono-package-runtime, sgen-grep-binprot, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr
GITHUB quay.io/biocontainers/bioconductor-msbackendsql singularity registry hpc automated addition for bioconductor-msbackendsql hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-mscoreutils shpc-registry automated BioContainers addition for bioconductor-mscoreutils
GITHUB quay.io/biocontainers/bioconductor-msd16s shpc-registry automated BioContainers addition for bioconductor-msd16s 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-msdata shpc-registry automated BioContainers addition for bioconductor-msdata
GITHUB quay.io/biocontainers/bioconductor-msdatahub singularity registry hpc automated addition for bioconductor-msdatahub hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1
GITHUB quay.io/biocontainers/bioconductor-mseadbi shpc-registry automated BioContainers addition for bioconductor-mseadbi x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-msexperiment singularity registry hpc automated addition for bioconductor-msexperiment installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-msfeatures shpc-registry automated BioContainers addition for bioconductor-msfeatures
GITHUB quay.io/biocontainers/bioconductor-msgbsr shpc-registry automated BioContainers addition for bioconductor-msgbsr gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-msgfgui shpc-registry automated BioContainers addition for bioconductor-msgfgui zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-msgfplus shpc-registry automated BioContainers addition for bioconductor-msgfplus jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bioconductor-msigdb shpc-registry automated BioContainers addition for bioconductor-msigdb
GITHUB quay.io/biocontainers/bioconductor-msimpute shpc-registry automated BioContainers addition for bioconductor-msimpute
GITHUB quay.io/biocontainers/bioconductor-mslp singularity registry hpc automated addition for bioconductor-mslp installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-msmb shpc-registry automated BioContainers addition for bioconductor-msmb x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-msmseda shpc-registry automated BioContainers addition for bioconductor-msmseda zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-msmstests shpc-registry automated BioContainers addition for bioconductor-msmstests zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-msnbase shpc-registry automated BioContainers addition for bioconductor-msnbase gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp
GITHUB quay.io/biocontainers/bioconductor-msnid shpc-registry automated BioContainers addition for bioconductor-msnid pandoc-server, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8
GITHUB quay.io/biocontainers/bioconductor-msprep shpc-registry automated BioContainers addition for bioconductor-msprep
GITHUB quay.io/biocontainers/bioconductor-mspurity shpc-registry automated BioContainers addition for bioconductor-mspurity gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp
GITHUB quay.io/biocontainers/bioconductor-mspuritydata shpc-registry automated BioContainers addition for bioconductor-mspuritydata wget
GITHUB quay.io/biocontainers/bioconductor-msqc1 shpc-registry automated BioContainers addition for bioconductor-msqc1
GITHUB quay.io/biocontainers/bioconductor-msqrob2 shpc-registry automated BioContainers addition for bioconductor-msqrob2
GITHUB quay.io/biocontainers/bioconductor-msquality singularity registry hpc automated addition for bioconductor-msquality hb-info, tjbench, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1
GITHUB quay.io/biocontainers/bioconductor-msstats shpc-registry automated BioContainers addition for bioconductor-msstats f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-msstatsbig singularity registry hpc automated addition for bioconductor-msstatsbig protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin
GITHUB quay.io/biocontainers/bioconductor-msstatsbiodata shpc-registry automated BioContainers addition for bioconductor-msstatsbiodata gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-msstatsconvert shpc-registry automated BioContainers addition for bioconductor-msstatsconvert
GITHUB quay.io/biocontainers/bioconductor-msstatslip shpc-registry automated BioContainers addition for bioconductor-msstatslip pandoc-server, pandoc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-msstatslobd shpc-registry automated BioContainers addition for bioconductor-msstatslobd
GITHUB quay.io/biocontainers/bioconductor-msstatsptm shpc-registry automated BioContainers addition for bioconductor-msstatsptm f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-msstatsqc shpc-registry automated BioContainers addition for bioconductor-msstatsqc gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp
GITHUB quay.io/biocontainers/bioconductor-msstatsqcgui shpc-registry automated BioContainers addition for bioconductor-msstatsqcgui pandoc-citeproc, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24
GITHUB quay.io/biocontainers/bioconductor-msstatssamplesize shpc-registry automated BioContainers addition for bioconductor-msstatssamplesize
GITHUB quay.io/biocontainers/bioconductor-msstatsshiny singularity registry hpc automated addition for bioconductor-msstatsshiny installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-msstatstmt shpc-registry automated BioContainers addition for bioconductor-msstatstmt
GITHUB quay.io/biocontainers/bioconductor-msstatstmtptm shpc-registry automated BioContainers addition for bioconductor-msstatstmtptm
GITHUB quay.io/biocontainers/bioconductor-mta10probeset.db shpc-registry automated BioContainers addition for bioconductor-mta10probeset.db
GITHUB quay.io/biocontainers/bioconductor-mta10transcriptcluster.db shpc-registry automated BioContainers addition for bioconductor-mta10transcriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-mtbls2 shpc-registry automated BioContainers addition for bioconductor-mtbls2
GITHUB quay.io/biocontainers/bioconductor-mtseeker shpc-registry automated BioContainers addition for bioconductor-mtseeker gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mtseekerdata shpc-registry automated BioContainers addition for bioconductor-mtseekerdata gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mu11ksuba.db shpc-registry automated BioContainers addition for bioconductor-mu11ksuba.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mu11ksubacdf shpc-registry automated BioContainers addition for bioconductor-mu11ksubacdf
GITHUB quay.io/biocontainers/bioconductor-mu11ksubaprobe shpc-registry automated BioContainers addition for bioconductor-mu11ksubaprobe
GITHUB quay.io/biocontainers/bioconductor-mu11ksubb.db shpc-registry automated BioContainers addition for bioconductor-mu11ksubb.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mu11ksubbcdf shpc-registry automated BioContainers addition for bioconductor-mu11ksubbcdf
GITHUB quay.io/biocontainers/bioconductor-mu11ksubbprobe shpc-registry automated BioContainers addition for bioconductor-mu11ksubbprobe
GITHUB quay.io/biocontainers/bioconductor-mu15v1.db shpc-registry automated BioContainers addition for bioconductor-mu15v1.db
GITHUB quay.io/biocontainers/bioconductor-mu19ksuba.db shpc-registry automated BioContainers addition for bioconductor-mu19ksuba.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mu19ksubacdf shpc-registry automated BioContainers addition for bioconductor-mu19ksubacdf
GITHUB quay.io/biocontainers/bioconductor-mu19ksubb.db shpc-registry automated BioContainers addition for bioconductor-mu19ksubb.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mu19ksubbcdf shpc-registry automated BioContainers addition for bioconductor-mu19ksubbcdf
GITHUB quay.io/biocontainers/bioconductor-mu19ksubc.db shpc-registry automated BioContainers addition for bioconductor-mu19ksubc.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mu19ksubccdf shpc-registry automated BioContainers addition for bioconductor-mu19ksubccdf
GITHUB quay.io/biocontainers/bioconductor-mu22v3.db shpc-registry automated BioContainers addition for bioconductor-mu22v3.db
GITHUB quay.io/biocontainers/bioconductor-mu6500subacdf shpc-registry automated BioContainers addition for bioconductor-mu6500subacdf
GITHUB quay.io/biocontainers/bioconductor-mu6500subbcdf shpc-registry automated BioContainers addition for bioconductor-mu6500subbcdf
GITHUB quay.io/biocontainers/bioconductor-mu6500subccdf shpc-registry automated BioContainers addition for bioconductor-mu6500subccdf
GITHUB quay.io/biocontainers/bioconductor-mu6500subdcdf shpc-registry automated BioContainers addition for bioconductor-mu6500subdcdf
GITHUB quay.io/biocontainers/bioconductor-mudata singularity registry hpc automated addition for bioconductor-mudata installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-mugaexampledata shpc-registry automated BioContainers addition for bioconductor-mugaexampledata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-mulcom shpc-registry automated BioContainers addition for bioconductor-mulcom
GITHUB quay.io/biocontainers/bioconductor-mulder2012 shpc-registry automated BioContainers addition for bioconductor-mulder2012 giffilter, gifsponge, gifecho, gifinto, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink
GITHUB quay.io/biocontainers/bioconductor-multiassayexperiment shpc-registry automated BioContainers addition for bioconductor-multiassayexperiment wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-multibac shpc-registry automated BioContainers addition for bioconductor-multibac
GITHUB quay.io/biocontainers/bioconductor-multiclust shpc-registry automated BioContainers addition for bioconductor-multiclust ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-multicrispr shpc-registry automated BioContainers addition for bioconductor-multicrispr
GITHUB quay.io/biocontainers/bioconductor-multidataset shpc-registry automated BioContainers addition for bioconductor-multidataset wget
GITHUB quay.io/biocontainers/bioconductor-multigsea shpc-registry automated BioContainers addition for bioconductor-multigsea
GITHUB quay.io/biocontainers/bioconductor-multihiccompare shpc-registry automated BioContainers addition for bioconductor-multihiccompare x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-multimed shpc-registry automated BioContainers addition for bioconductor-multimed gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-multimir shpc-registry automated BioContainers addition for bioconductor-multimir gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-multimodalexperiment singularity registry hpc automated addition for bioconductor-multimodalexperiment hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-multiomicsviz shpc-registry automated BioContainers addition for bioconductor-multiomicsviz gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-multiscan shpc-registry automated BioContainers addition for bioconductor-multiscan
GITHUB quay.io/biocontainers/bioconductor-multisight shpc-registry automated BioContainers addition for bioconductor-multisight pandoc
GITHUB quay.io/biocontainers/bioconductor-multiwgcna singularity registry hpc automated addition for bioconductor-multiwgcna pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-multtest shpc-registry automated BioContainers addition for bioconductor-multtest
GITHUB quay.io/biocontainers/bioconductor-mumosa shpc-registry automated BioContainers addition for bioconductor-mumosa
GITHUB quay.io/biocontainers/bioconductor-mungesumstats shpc-registry automated BioContainers addition for bioconductor-mungesumstats
GITHUB quay.io/biocontainers/bioconductor-mus.musculus shpc-registry automated BioContainers addition for bioconductor-mus.musculus
GITHUB quay.io/biocontainers/bioconductor-muscat shpc-registry automated BioContainers addition for bioconductor-muscat
GITHUB quay.io/biocontainers/bioconductor-muscdata shpc-registry automated BioContainers addition for bioconductor-muscdata
GITHUB quay.io/biocontainers/bioconductor-muscle shpc-registry automated BioContainers addition for bioconductor-muscle
GITHUB quay.io/biocontainers/bioconductor-musicatk shpc-registry automated BioContainers addition for bioconductor-musicatk pandoc
GITHUB quay.io/biocontainers/bioconductor-mutationalpatterns shpc-registry automated BioContainers addition for bioconductor-mutationalpatterns
GITHUB quay.io/biocontainers/bioconductor-mvcclass shpc-registry automated BioContainers addition for bioconductor-mvcclass
GITHUB quay.io/biocontainers/bioconductor-mvgst shpc-registry automated BioContainers addition for bioconductor-mvgst wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-mvoutdata shpc-registry automated BioContainers addition for bioconductor-mvoutdata
GITHUB quay.io/biocontainers/bioconductor-mwastools shpc-registry automated BioContainers addition for bioconductor-mwastools gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-mwgcod.db shpc-registry automated BioContainers addition for bioconductor-mwgcod.db
GITHUB quay.io/biocontainers/bioconductor-mygene shpc-registry automated BioContainers addition for bioconductor-mygene
GITHUB quay.io/biocontainers/bioconductor-myvariant shpc-registry automated BioContainers addition for bioconductor-myvariant my_print_defaults, mysql_config, perror, wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-mzid shpc-registry automated BioContainers addition for bioconductor-mzid
GITHUB quay.io/biocontainers/bioconductor-mzr shpc-registry automated BioContainers addition for bioconductor-mzr nc-config, nccopy, ncdump, ncgen, ncgen3, uconv, gif2h5, h52gif, h5c++, h5copy
GITHUB quay.io/biocontainers/bioconductor-nadfinder shpc-registry automated BioContainers addition for bioconductor-nadfinder gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-nanomethviz shpc-registry automated BioContainers addition for bioconductor-nanomethviz
GITHUB quay.io/biocontainers/bioconductor-nanoporernaseq shpc-registry automated BioContainers addition for bioconductor-nanoporernaseq
GITHUB quay.io/biocontainers/bioconductor-nanostringdiff shpc-registry automated BioContainers addition for bioconductor-nanostringdiff
GITHUB quay.io/biocontainers/bioconductor-nanostringnctools shpc-registry automated BioContainers addition for bioconductor-nanostringnctools
GITHUB quay.io/biocontainers/bioconductor-nanostringqcpro shpc-registry automated BioContainers addition for bioconductor-nanostringqcpro
GITHUB quay.io/biocontainers/bioconductor-nanotator shpc-registry automated BioContainers addition for bioconductor-nanotator x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-nanotube shpc-registry automated BioContainers addition for bioconductor-nanotube
GITHUB quay.io/biocontainers/bioconductor-nanotubes shpc-registry automated BioContainers addition for bioconductor-nanotubes x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-narrowpeaks shpc-registry automated BioContainers addition for bioconductor-narrowpeaks 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-nbamseq shpc-registry automated BioContainers addition for bioconductor-nbamseq x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-nbsplice shpc-registry automated BioContainers addition for bioconductor-nbsplice x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-ncdfflow shpc-registry automated BioContainers addition for bioconductor-ncdfflow
GITHUB quay.io/biocontainers/bioconductor-ncgtw shpc-registry automated BioContainers addition for bioconductor-ncgtw zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-ncigraph shpc-registry automated BioContainers addition for bioconductor-ncigraph Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage
GITHUB quay.io/biocontainers/bioconductor-ncigraphdata shpc-registry automated BioContainers addition for bioconductor-ncigraphdata
GITHUB quay.io/biocontainers/bioconductor-ncrnatools shpc-registry automated BioContainers addition for bioconductor-ncrnatools
GITHUB quay.io/biocontainers/bioconductor-ndexr shpc-registry automated BioContainers addition for bioconductor-ndexr gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-nearbynding shpc-registry automated BioContainers addition for bioconductor-nearbynding
GITHUB quay.io/biocontainers/bioconductor-nebulosa shpc-registry automated BioContainers addition for bioconductor-nebulosa
GITHUB quay.io/biocontainers/bioconductor-neighbornet shpc-registry automated BioContainers addition for bioconductor-neighbornet x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-nem shpc-registry automated BioContainers addition for bioconductor-nem gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-nempi shpc-registry automated BioContainers addition for bioconductor-nempi
GITHUB quay.io/biocontainers/bioconductor-nestlink shpc-registry automated BioContainers addition for bioconductor-nestlink x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-netactivity singularity registry hpc automated addition for bioconductor-netactivity installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-netactivitydata singularity registry hpc automated addition for bioconductor-netactivitydata installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-netbenchmark shpc-registry automated BioContainers addition for bioconductor-netbenchmark 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-netbiov shpc-registry automated BioContainers addition for bioconductor-netbiov
GITHUB quay.io/biocontainers/bioconductor-netboost shpc-registry automated BioContainers addition for bioconductor-netboost x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-netboxr shpc-registry automated BioContainers addition for bioconductor-netboxr
GITHUB quay.io/biocontainers/bioconductor-netdx.examples shpc-registry automated BioContainers addition for bioconductor-netdx.examples 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-netdx shpc-registry automated BioContainers addition for bioconductor-netdx
GITHUB quay.io/biocontainers/bioconductor-nethet shpc-registry automated BioContainers addition for bioconductor-nethet glpsol
GITHUB quay.io/biocontainers/bioconductor-netomics shpc-registry automated BioContainers addition for bioconductor-netomics
GITHUB quay.io/biocontainers/bioconductor-netpathminer shpc-registry automated BioContainers addition for bioconductor-netpathminer glpsol
GITHUB quay.io/biocontainers/bioconductor-netprior shpc-registry automated BioContainers addition for bioconductor-netprior c89, c99
GITHUB quay.io/biocontainers/bioconductor-netreg shpc-registry automated BioContainers addition for bioconductor-netreg gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-netresponse shpc-registry automated BioContainers addition for bioconductor-netresponse pandoc-server, glpsol, pandoc
GITHUB quay.io/biocontainers/bioconductor-netsam shpc-registry automated BioContainers addition for bioconductor-netsam
GITHUB quay.io/biocontainers/bioconductor-netsmooth shpc-registry automated BioContainers addition for bioconductor-netsmooth f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-networkbma shpc-registry automated BioContainers addition for bioconductor-networkbma
GITHUB quay.io/biocontainers/bioconductor-netzoor singularity registry hpc automated addition for bioconductor-netzoor 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, Cytoscape, cytoscape.sh, gen_vmoptions.sh, jpackage, curve_keygen, cups-config, ippeveprinter, ipptool, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, jfr, aserver, jdeprscan, jhsdb, jimage, jlink
GITHUB quay.io/biocontainers/bioconductor-neuca shpc-registry automated BioContainers addition for bioconductor-neuca
GITHUB quay.io/biocontainers/bioconductor-neve2006 shpc-registry automated BioContainers addition for bioconductor-neve2006
GITHUB quay.io/biocontainers/bioconductor-newwave shpc-registry automated BioContainers addition for bioconductor-newwave
GITHUB quay.io/biocontainers/bioconductor-ngscopy shpc-registry automated BioContainers addition for bioconductor-ngscopy gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ngscopydata shpc-registry automated BioContainers addition for bioconductor-ngscopydata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-ngsreports shpc-registry automated BioContainers addition for bioconductor-ngsreports pandoc, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-nipalsmcia singularity registry hpc automated addition for bioconductor-nipalsmcia pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete
GITHUB quay.io/biocontainers/bioconductor-nnnorm shpc-registry automated BioContainers addition for bioconductor-nnnorm
GITHUB quay.io/biocontainers/bioconductor-nnsvg singularity registry hpc automated addition for bioconductor-nnsvg x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500
GITHUB quay.io/biocontainers/bioconductor-noiseq shpc-registry automated BioContainers addition for bioconductor-noiseq
GITHUB quay.io/biocontainers/bioconductor-nondetects shpc-registry automated BioContainers addition for bioconductor-nondetects ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-norce shpc-registry automated BioContainers addition for bioconductor-norce
GITHUB quay.io/biocontainers/bioconductor-normalize450k shpc-registry automated BioContainers addition for bioconductor-normalize450k
GITHUB quay.io/biocontainers/bioconductor-normalyzerde shpc-registry automated BioContainers addition for bioconductor-normalyzerde x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-normqpcr shpc-registry automated BioContainers addition for bioconductor-normqpcr
GITHUB quay.io/biocontainers/bioconductor-normr shpc-registry automated BioContainers addition for bioconductor-normr wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-norway981.db shpc-registry automated BioContainers addition for bioconductor-norway981.db
GITHUB quay.io/biocontainers/bioconductor-nparc shpc-registry automated BioContainers addition for bioconductor-nparc
GITHUB quay.io/biocontainers/bioconductor-npgsea shpc-registry automated BioContainers addition for bioconductor-npgsea
GITHUB quay.io/biocontainers/bioconductor-ntw shpc-registry automated BioContainers addition for bioconductor-ntw
GITHUB quay.io/biocontainers/bioconductor-nucleosim shpc-registry automated BioContainers addition for bioconductor-nucleosim ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-nucler shpc-registry automated BioContainers addition for bioconductor-nucler bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-nucpos shpc-registry automated BioContainers addition for bioconductor-nucpos x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-nudge shpc-registry automated BioContainers addition for bioconductor-nudge
GITHUB quay.io/biocontainers/bioconductor-nugohs1a520180.db shpc-registry automated BioContainers addition for bioconductor-nugohs1a520180.db
GITHUB quay.io/biocontainers/bioconductor-nugohs1a520180cdf shpc-registry automated BioContainers addition for bioconductor-nugohs1a520180cdf
GITHUB quay.io/biocontainers/bioconductor-nugohs1a520180probe shpc-registry automated BioContainers addition for bioconductor-nugohs1a520180probe
GITHUB quay.io/biocontainers/bioconductor-nugomm1a520177.db shpc-registry automated BioContainers addition for bioconductor-nugomm1a520177.db
GITHUB quay.io/biocontainers/bioconductor-nugomm1a520177cdf shpc-registry automated BioContainers addition for bioconductor-nugomm1a520177cdf
GITHUB quay.io/biocontainers/bioconductor-nugomm1a520177probe shpc-registry automated BioContainers addition for bioconductor-nugomm1a520177probe
GITHUB quay.io/biocontainers/bioconductor-nullranges shpc-registry automated BioContainers addition for bioconductor-nullranges
GITHUB quay.io/biocontainers/bioconductor-nullrangesdata shpc-registry automated BioContainers addition for bioconductor-nullrangesdata
GITHUB quay.io/biocontainers/bioconductor-nupop shpc-registry automated BioContainers addition for bioconductor-nupop
GITHUB quay.io/biocontainers/bioconductor-nxtirfcore shpc-registry automated BioContainers addition for bioconductor-nxtirfcore
GITHUB quay.io/biocontainers/bioconductor-nxtirfdata shpc-registry automated BioContainers addition for bioconductor-nxtirfdata
GITHUB quay.io/biocontainers/bioconductor-obmiti shpc-registry automated BioContainers addition for bioconductor-obmiti
GITHUB quay.io/biocontainers/bioconductor-occugene shpc-registry automated BioContainers addition for bioconductor-occugene
GITHUB quay.io/biocontainers/bioconductor-ocplus shpc-registry automated BioContainers addition for bioconductor-ocplus
GITHUB quay.io/biocontainers/bioconductor-oct4 shpc-registry automated BioContainers addition for bioconductor-oct4 x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-octad.db singularity registry hpc automated addition for bioconductor-octad.db installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-oder shpc-registry automated BioContainers addition for bioconductor-oder
GITHUB quay.io/biocontainers/bioconductor-odseq shpc-registry automated BioContainers addition for bioconductor-odseq
GITHUB quay.io/biocontainers/bioconductor-ogre singularity registry hpc automated addition for bioconductor-ogre installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-ogsa shpc-registry automated BioContainers addition for bioconductor-ogsa tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-oligo shpc-registry automated BioContainers addition for bioconductor-oligo
GITHUB quay.io/biocontainers/bioconductor-oligoclasses shpc-registry automated BioContainers addition for bioconductor-oligoclasses
GITHUB quay.io/biocontainers/bioconductor-oligodata shpc-registry automated BioContainers addition for bioconductor-oligodata
GITHUB quay.io/biocontainers/bioconductor-olin shpc-registry automated BioContainers addition for bioconductor-olin
GITHUB quay.io/biocontainers/bioconductor-olingui shpc-registry automated BioContainers addition for bioconductor-olingui
GITHUB quay.io/biocontainers/bioconductor-omada singularity registry hpc automated addition for bioconductor-omada
GITHUB quay.io/biocontainers/bioconductor-omadb shpc-registry automated BioContainers addition for bioconductor-omadb x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-omicade4 shpc-registry automated BioContainers addition for bioconductor-omicade4
GITHUB quay.io/biocontainers/bioconductor-omiccircos shpc-registry automated BioContainers addition for bioconductor-omiccircos
GITHUB quay.io/biocontainers/bioconductor-omicplotr shpc-registry automated BioContainers addition for bioconductor-omicplotr pandoc-citeproc, pandoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-omicrexposome shpc-registry automated BioContainers addition for bioconductor-omicrexposome f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-omicslonda shpc-registry automated BioContainers addition for bioconductor-omicslonda x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-omicsmarker shpc-registry automated BioContainers addition for bioconductor-omicsmarker 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-omicsmlrepor singularity registry hpc automated addition for bioconductor-omicsmlrepor pandoc-lua, x86_64-conda-linux-gnu.cfg, pandoc-server, glpsol, pandoc, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-omicspca shpc-registry automated BioContainers addition for bioconductor-omicspca pdfattach, pdfdetach, pdffonts, pdfimages, pdfinfo, pdfseparate, pdftocairo, pdftohtml, pdftoppm, pdftops
GITHUB quay.io/biocontainers/bioconductor-omicspcadata shpc-registry automated BioContainers addition for bioconductor-omicspcadata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-omicsprint shpc-registry automated BioContainers addition for bioconductor-omicsprint 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-omicsviewer singularity registry hpc automated addition for bioconductor-omicsviewer installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-omixer shpc-registry automated BioContainers addition for bioconductor-omixer
GITHUB quay.io/biocontainers/bioconductor-omnipathr shpc-registry automated BioContainers addition for bioconductor-omnipathr
GITHUB quay.io/biocontainers/bioconductor-ompbam singularity registry hpc automated addition for bioconductor-ompbam
GITHUB quay.io/biocontainers/bioconductor-omxplore singularity registry hpc automated addition for bioconductor-omxplore h5fuse, pandoc-lua, x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, pandoc-server, numpy-config, zipcmp, zipmerge, ziptool, h5delete, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls
GITHUB quay.io/biocontainers/bioconductor-onassis shpc-registry automated BioContainers addition for bioconductor-onassis extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/bioconductor-onassisjavalibs shpc-registry automated BioContainers addition for bioconductor-onassisjavalibs extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/bioconductor-oncomix shpc-registry automated BioContainers addition for bioconductor-oncomix gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-oncoscanr singularity registry hpc automated addition for bioconductor-oncoscanr installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-oncoscore shpc-registry automated BioContainers addition for bioconductor-oncoscore
GITHUB quay.io/biocontainers/bioconductor-oncosimulr shpc-registry automated BioContainers addition for bioconductor-oncosimulr glpsol, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-onesense shpc-registry automated BioContainers addition for bioconductor-onesense gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-onlinefdr shpc-registry automated BioContainers addition for bioconductor-onlinefdr
GITHUB quay.io/biocontainers/bioconductor-ontoproc shpc-registry automated BioContainers addition for bioconductor-ontoproc gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ontoprocdata shpc-registry automated BioContainers addition for bioconductor-ontoprocdata
GITHUB quay.io/biocontainers/bioconductor-opencyto shpc-registry automated BioContainers addition for bioconductor-opencyto
GITHUB quay.io/biocontainers/bioconductor-openprimer shpc-registry automated BioContainers addition for bioconductor-openprimer mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns, mafft-fftnsi
GITHUB quay.io/biocontainers/bioconductor-openprimerui shpc-registry automated BioContainers addition for bioconductor-openprimerui mafft-sparsecore.rb, pandoc-citeproc, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns
GITHUB quay.io/biocontainers/bioconductor-openstats shpc-registry automated BioContainers addition for bioconductor-openstats x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify
GITHUB quay.io/biocontainers/bioconductor-operonhumanv3.db shpc-registry automated BioContainers addition for bioconductor-operonhumanv3.db
GITHUB quay.io/biocontainers/bioconductor-opossom shpc-registry automated BioContainers addition for bioconductor-opossom x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-oppar shpc-registry automated BioContainers addition for bioconductor-oppar ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-oppti shpc-registry automated BioContainers addition for bioconductor-oppti
GITHUB quay.io/biocontainers/bioconductor-optimalflow shpc-registry automated BioContainers addition for bioconductor-optimalflow
GITHUB quay.io/biocontainers/bioconductor-optimalflowdata shpc-registry automated BioContainers addition for bioconductor-optimalflowdata
GITHUB quay.io/biocontainers/bioconductor-opweight shpc-registry automated BioContainers addition for bioconductor-opweight gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-orderedlist shpc-registry automated BioContainers addition for bioconductor-orderedlist
GITHUB quay.io/biocontainers/bioconductor-orfhunter shpc-registry automated BioContainers addition for bioconductor-orfhunter
GITHUB quay.io/biocontainers/bioconductor-orfik shpc-registry automated BioContainers addition for bioconductor-orfik 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-org.ag.eg.db shpc-registry automated BioContainers addition for bioconductor-org.ag.eg.db gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-org.at.tair.db shpc-registry automated BioContainers addition for bioconductor-org.at.tair.db gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-org.bt.eg.db shpc-registry automated BioContainers addition for bioconductor-org.bt.eg.db gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-org.ce.eg.db shpc-registry automated BioContainers addition for bioconductor-org.ce.eg.db gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-org.cf.eg.db shpc-registry automated BioContainers addition for bioconductor-org.cf.eg.db gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-org.dm.eg.db shpc-registry automated BioContainers addition for bioconductor-org.dm.eg.db gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-org.dr.eg.db shpc-registry automated BioContainers addition for bioconductor-org.dr.eg.db gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-org.eck12.eg.db shpc-registry automated BioContainers addition for bioconductor-org.eck12.eg.db gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-org.ecsakai.eg.db shpc-registry automated BioContainers addition for bioconductor-org.ecsakai.eg.db gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-org.gg.eg.db shpc-registry automated BioContainers addition for bioconductor-org.gg.eg.db gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-org.hs.eg.db shpc-registry automated BioContainers addition for bioconductor-org.hs.eg.db gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-org.mm.eg.db shpc-registry automated BioContainers addition for bioconductor-org.mm.eg.db gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-org.mmu.eg.db shpc-registry automated BioContainers addition for bioconductor-org.mmu.eg.db gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-org.mxanthus.db shpc-registry automated BioContainers addition for bioconductor-org.mxanthus.db pandoc-server, pandoc
GITHUB quay.io/biocontainers/bioconductor-org.pf.plasmo.db shpc-registry automated BioContainers addition for bioconductor-org.pf.plasmo.db gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-org.pt.eg.db shpc-registry automated BioContainers addition for bioconductor-org.pt.eg.db gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-org.rn.eg.db shpc-registry automated BioContainers addition for bioconductor-org.rn.eg.db gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-org.sc.sgd.db shpc-registry automated BioContainers addition for bioconductor-org.sc.sgd.db gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-org.ss.eg.db shpc-registry automated BioContainers addition for bioconductor-org.ss.eg.db gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-org.xl.eg.db shpc-registry automated BioContainers addition for bioconductor-org.xl.eg.db gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-organism.dplyr shpc-registry automated BioContainers addition for bioconductor-organism.dplyr
GITHUB quay.io/biocontainers/bioconductor-organismdbi shpc-registry automated BioContainers addition for bioconductor-organismdbi
GITHUB quay.io/biocontainers/bioconductor-orthogene shpc-registry automated BioContainers addition for bioconductor-orthogene
GITHUB quay.io/biocontainers/bioconductor-orthology.eg.db shpc-registry automated BioContainers addition for bioconductor-orthology.eg.db
GITHUB quay.io/biocontainers/bioconductor-orthos singularity registry hpc automated addition for bioconductor-orthos protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin
GITHUB quay.io/biocontainers/bioconductor-orthosdata singularity registry hpc automated addition for bioconductor-orthosdata pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-osat shpc-registry automated BioContainers addition for bioconductor-osat
GITHUB quay.io/biocontainers/bioconductor-oscope shpc-registry automated BioContainers addition for bioconductor-oscope tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-otubase shpc-registry automated BioContainers addition for bioconductor-otubase
GITHUB quay.io/biocontainers/bioconductor-outlierd shpc-registry automated BioContainers addition for bioconductor-outlierd x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-outrider shpc-registry automated BioContainers addition for bioconductor-outrider x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-outsplice singularity registry hpc automated addition for bioconductor-outsplice hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-oveseg shpc-registry automated BioContainers addition for bioconductor-oveseg x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-paa shpc-registry automated BioContainers addition for bioconductor-paa glpsol
GITHUB quay.io/biocontainers/bioconductor-packfinder shpc-registry automated BioContainers addition for bioconductor-packfinder
GITHUB quay.io/biocontainers/bioconductor-padma shpc-registry automated BioContainers addition for bioconductor-padma
GITHUB quay.io/biocontainers/bioconductor-padog shpc-registry automated BioContainers addition for bioconductor-padog
GITHUB quay.io/biocontainers/bioconductor-paeg1acdf shpc-registry automated BioContainers addition for bioconductor-paeg1acdf
GITHUB quay.io/biocontainers/bioconductor-paeg1aprobe shpc-registry automated BioContainers addition for bioconductor-paeg1aprobe
GITHUB quay.io/biocontainers/bioconductor-pagerank shpc-registry automated BioContainers addition for bioconductor-pagerank
GITHUB quay.io/biocontainers/bioconductor-pairadise shpc-registry automated BioContainers addition for bioconductor-pairadise x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-paircompviz shpc-registry automated BioContainers addition for bioconductor-paircompviz
GITHUB quay.io/biocontainers/bioconductor-pairedgsea singularity registry hpc automated addition for bioconductor-pairedgsea hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-pairkat shpc-registry automated BioContainers addition for bioconductor-pairkat
GITHUB quay.io/biocontainers/bioconductor-pandar shpc-registry automated BioContainers addition for bioconductor-pandar
GITHUB quay.io/biocontainers/bioconductor-panelcn.mops shpc-registry automated BioContainers addition for bioconductor-panelcn.mops gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-pannbuilder shpc-registry automated BioContainers addition for bioconductor-pannbuilder ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-panomir singularity registry hpc automated addition for bioconductor-panomir installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-panp shpc-registry automated BioContainers addition for bioconductor-panp
GITHUB quay.io/biocontainers/bioconductor-panr shpc-registry automated BioContainers addition for bioconductor-panr
GITHUB quay.io/biocontainers/bioconductor-panther.db shpc-registry automated BioContainers addition for bioconductor-panther.db gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-panvizgenerator shpc-registry automated BioContainers addition for bioconductor-panvizgenerator
GITHUB quay.io/biocontainers/bioconductor-papi shpc-registry automated BioContainers addition for bioconductor-papi gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-parathyroidse shpc-registry automated BioContainers addition for bioconductor-parathyroidse
GITHUB quay.io/biocontainers/bioconductor-pareg singularity registry hpc automated addition for bioconductor-pareg installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-parglms shpc-registry automated BioContainers addition for bioconductor-parglms
GITHUB quay.io/biocontainers/bioconductor-parody shpc-registry automated BioContainers addition for bioconductor-parody
GITHUB quay.io/biocontainers/bioconductor-partcnv singularity registry hpc automated addition for bioconductor-partcnv pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-partheenmetadata.db shpc-registry automated BioContainers addition for bioconductor-partheenmetadata.db
GITHUB quay.io/biocontainers/bioconductor-pasilla shpc-registry automated BioContainers addition for bioconductor-pasilla
GITHUB quay.io/biocontainers/bioconductor-pasillabamsubset shpc-registry automated BioContainers addition for bioconductor-pasillabamsubset
GITHUB quay.io/biocontainers/bioconductor-pasillatranscriptexpr shpc-registry automated BioContainers addition for bioconductor-pasillatranscriptexpr
GITHUB quay.io/biocontainers/bioconductor-past shpc-registry automated BioContainers addition for bioconductor-past x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-path2ppi shpc-registry automated BioContainers addition for bioconductor-path2ppi tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-pathifier shpc-registry automated BioContainers addition for bioconductor-pathifier
GITHUB quay.io/biocontainers/bioconductor-pathnet shpc-registry automated BioContainers addition for bioconductor-pathnet
GITHUB quay.io/biocontainers/bioconductor-pathnetdata shpc-registry automated BioContainers addition for bioconductor-pathnetdata
GITHUB quay.io/biocontainers/bioconductor-pathostat shpc-registry automated BioContainers addition for bioconductor-pathostat pandoc-citeproc, pandoc, wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-pathprint shpc-registry automated BioContainers addition for bioconductor-pathprint ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-pathprintgeodata shpc-registry automated BioContainers addition for bioconductor-pathprintgeodata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-pathrender shpc-registry automated BioContainers addition for bioconductor-pathrender
GITHUB quay.io/biocontainers/bioconductor-pathvar shpc-registry automated BioContainers addition for bioconductor-pathvar ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-pathview shpc-registry automated BioContainers addition for bioconductor-pathview bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-pathwaypca shpc-registry automated BioContainers addition for bioconductor-pathwaypca x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-pathwaysplice shpc-registry automated BioContainers addition for bioconductor-pathwaysplice gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-paxtoolsr shpc-registry automated BioContainers addition for bioconductor-paxtoolsr jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bioconductor-pbase shpc-registry automated BioContainers addition for bioconductor-pbase gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp
GITHUB quay.io/biocontainers/bioconductor-pbcmc shpc-registry automated BioContainers addition for bioconductor-pbcmc ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-pcaexplorer shpc-registry automated BioContainers addition for bioconductor-pcaexplorer pandoc-citeproc, pandoc, wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-pcagopromoter.hs.hg19 shpc-registry automated BioContainers addition for bioconductor-pcagopromoter.hs.hg19 x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-pcagopromoter shpc-registry automated BioContainers addition for bioconductor-pcagopromoter
GITHUB quay.io/biocontainers/bioconductor-pcagopromoter.mm.mm9 shpc-registry automated BioContainers addition for bioconductor-pcagopromoter.mm.mm9 x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-pcagopromoter.rn.rn4 shpc-registry automated BioContainers addition for bioconductor-pcagopromoter.rn.rn4 x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-pcamethods shpc-registry automated BioContainers addition for bioconductor-pcamethods
GITHUB quay.io/biocontainers/bioconductor-pcan shpc-registry automated BioContainers addition for bioconductor-pcan
GITHUB quay.io/biocontainers/bioconductor-pcatools shpc-registry automated BioContainers addition for bioconductor-pcatools
GITHUB quay.io/biocontainers/bioconductor-pchicdata shpc-registry automated BioContainers addition for bioconductor-pchicdata wget
GITHUB quay.io/biocontainers/bioconductor-pcot2 shpc-registry automated BioContainers addition for bioconductor-pcot2 x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-pcpheno shpc-registry automated BioContainers addition for bioconductor-pcpheno 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-pcxn shpc-registry automated BioContainers addition for bioconductor-pcxn gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-pcxndata shpc-registry automated BioContainers addition for bioconductor-pcxndata gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-pdatk shpc-registry automated BioContainers addition for bioconductor-pdatk
GITHUB quay.io/biocontainers/bioconductor-pdinfobuilder shpc-registry automated BioContainers addition for bioconductor-pdinfobuilder
GITHUB quay.io/biocontainers/bioconductor-peacoqc shpc-registry automated BioContainers addition for bioconductor-peacoqc
GITHUB quay.io/biocontainers/bioconductor-peakpanther shpc-registry automated BioContainers addition for bioconductor-peakpanther zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-peca shpc-registry automated BioContainers addition for bioconductor-peca
GITHUB quay.io/biocontainers/bioconductor-peco shpc-registry automated BioContainers addition for bioconductor-peco
GITHUB quay.io/biocontainers/bioconductor-pedbarrayv10.db shpc-registry automated BioContainers addition for bioconductor-pedbarrayv10.db
GITHUB quay.io/biocontainers/bioconductor-pedbarrayv9.db shpc-registry automated BioContainers addition for bioconductor-pedbarrayv9.db
GITHUB quay.io/biocontainers/bioconductor-pengls shpc-registry automated BioContainers addition for bioconductor-pengls
GITHUB quay.io/biocontainers/bioconductor-pepdat shpc-registry automated BioContainers addition for bioconductor-pepdat 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-pepsnmr shpc-registry automated BioContainers addition for bioconductor-pepsnmr x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-pepsnmrdata shpc-registry automated BioContainers addition for bioconductor-pepsnmrdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-pepstat shpc-registry automated BioContainers addition for bioconductor-pepstat
GITHUB quay.io/biocontainers/bioconductor-pepxmltab shpc-registry automated BioContainers addition for bioconductor-pepxmltab
GITHUB quay.io/biocontainers/bioconductor-perfect shpc-registry automated BioContainers addition for bioconductor-perfect
GITHUB quay.io/biocontainers/bioconductor-periodicdna shpc-registry automated BioContainers addition for bioconductor-periodicdna
GITHUB quay.io/biocontainers/bioconductor-perturbatr shpc-registry automated BioContainers addition for bioconductor-perturbatr 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-pfam.db shpc-registry automated BioContainers addition for bioconductor-pfam.db gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-pfamanalyzer singularity registry hpc automated addition for bioconductor-pfamanalyzer hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-pfp shpc-registry automated BioContainers addition for bioconductor-pfp
GITHUB quay.io/biocontainers/bioconductor-pga shpc-registry automated BioContainers addition for bioconductor-pga 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-pgca shpc-registry automated BioContainers addition for bioconductor-pgca gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-pgsea shpc-registry automated BioContainers addition for bioconductor-pgsea 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-phantasus shpc-registry automated BioContainers addition for bioconductor-phantasus protoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-phantasuslite singularity registry hpc automated addition for bioconductor-phantasuslite pcre2posix_test, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-pharmacogx shpc-registry automated BioContainers addition for bioconductor-pharmacogx
GITHUB quay.io/biocontainers/bioconductor-phastcons30way.ucsc.hg38 shpc-registry automated BioContainers addition for bioconductor-phastcons30way.ucsc.hg38
GITHUB quay.io/biocontainers/bioconductor-phastcons35way.ucsc.mm39 singularity registry hpc automated addition for bioconductor-phastcons35way.ucsc.mm39 installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-phastcons7way.ucsc.hg38 shpc-registry automated BioContainers addition for bioconductor-phastcons7way.ucsc.hg38
GITHUB quay.io/biocontainers/bioconductor-phemd shpc-registry automated BioContainers addition for bioconductor-phemd f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-phenodist shpc-registry automated BioContainers addition for bioconductor-phenodist fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/bioconductor-phenogeneranker shpc-registry automated BioContainers addition for bioconductor-phenogeneranker
GITHUB quay.io/biocontainers/bioconductor-phenomis singularity registry hpc automated addition for bioconductor-phenomis installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-phenopath shpc-registry automated BioContainers addition for bioconductor-phenopath gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-phenotest shpc-registry automated BioContainers addition for bioconductor-phenotest
GITHUB quay.io/biocontainers/bioconductor-phenstat shpc-registry automated BioContainers addition for bioconductor-phenstat
GITHUB quay.io/biocontainers/bioconductor-philr shpc-registry automated BioContainers addition for bioconductor-philr c89, c99
GITHUB quay.io/biocontainers/bioconductor-phipdata shpc-registry automated BioContainers addition for bioconductor-phipdata
GITHUB quay.io/biocontainers/bioconductor-phosphonormalizer shpc-registry automated BioContainers addition for bioconductor-phosphonormalizer gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-phosr shpc-registry automated BioContainers addition for bioconductor-phosr
GITHUB quay.io/biocontainers/bioconductor-phylop35way.ucsc.mm39 singularity registry hpc automated addition for bioconductor-phylop35way.ucsc.mm39 installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-phyloprofile shpc-registry automated BioContainers addition for bioconductor-phyloprofile pandoc
GITHUB quay.io/biocontainers/bioconductor-phyloprofiledata shpc-registry automated BioContainers addition for bioconductor-phyloprofiledata pandoc-server, pandoc
GITHUB quay.io/biocontainers/bioconductor-phyloseq shpc-registry automated BioContainers addition for bioconductor-phyloseq
GITHUB quay.io/biocontainers/bioconductor-pi shpc-registry automated BioContainers addition for bioconductor-pi
GITHUB quay.io/biocontainers/bioconductor-piano shpc-registry automated BioContainers addition for bioconductor-piano x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-pickgene shpc-registry automated BioContainers addition for bioconductor-pickgene
GITHUB quay.io/biocontainers/bioconductor-pics shpc-registry automated BioContainers addition for bioconductor-pics
GITHUB quay.io/biocontainers/bioconductor-pig.db0 shpc-registry automated BioContainers addition for bioconductor-pig.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-pigengene shpc-registry automated BioContainers addition for bioconductor-pigengene wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ping shpc-registry automated BioContainers addition for bioconductor-ping
GITHUB quay.io/biocontainers/bioconductor-pint shpc-registry automated BioContainers addition for bioconductor-pint gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-pipecomp shpc-registry automated BioContainers addition for bioconductor-pipecomp
GITHUB quay.io/biocontainers/bioconductor-pipeframe shpc-registry automated BioContainers addition for bioconductor-pipeframe x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-pipets singularity registry hpc automated addition for bioconductor-pipets x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-piuma singularity registry hpc automated addition for bioconductor-piuma pandoc-lua, x86_64-conda-linux-gnu.cfg, pandoc-server, idle3.13, pydoc3.13, python3.13, python3.13-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-pkgdeptools shpc-registry automated BioContainers addition for bioconductor-pkgdeptools
GITHUB quay.io/biocontainers/bioconductor-planet shpc-registry automated BioContainers addition for bioconductor-planet
GITHUB quay.io/biocontainers/bioconductor-planttfhunter singularity registry hpc automated addition for bioconductor-planttfhunter hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-plasfia shpc-registry automated BioContainers addition for bioconductor-plasfia zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-plasmodiumanophelescdf shpc-registry automated BioContainers addition for bioconductor-plasmodiumanophelescdf
GITHUB quay.io/biocontainers/bioconductor-plasmodiumanophelesprobe shpc-registry automated BioContainers addition for bioconductor-plasmodiumanophelesprobe
GITHUB quay.io/biocontainers/bioconductor-plasmut singularity registry hpc automated addition for bioconductor-plasmut pcre2posix_test, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-platecore shpc-registry automated BioContainers addition for bioconductor-platecore c89, c99
GITHUB quay.io/biocontainers/bioconductor-plethy shpc-registry automated BioContainers addition for bioconductor-plethy x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-plgem shpc-registry automated BioContainers addition for bioconductor-plgem
GITHUB quay.io/biocontainers/bioconductor-plier shpc-registry automated BioContainers addition for bioconductor-plier
GITHUB quay.io/biocontainers/bioconductor-plogo2 shpc-registry automated BioContainers addition for bioconductor-plogo2
GITHUB quay.io/biocontainers/bioconductor-plotgardener shpc-registry automated BioContainers addition for bioconductor-plotgardener
GITHUB quay.io/biocontainers/bioconductor-plotgardenerdata shpc-registry automated BioContainers addition for bioconductor-plotgardenerdata
GITHUB quay.io/biocontainers/bioconductor-plotgrouper shpc-registry automated BioContainers addition for bioconductor-plotgrouper x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-plpe shpc-registry automated BioContainers addition for bioconductor-plpe
GITHUB quay.io/biocontainers/bioconductor-plrs shpc-registry automated BioContainers addition for bioconductor-plrs 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-plw shpc-registry automated BioContainers addition for bioconductor-plw 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-plyinteractions singularity registry hpc automated addition for bioconductor-plyinteractions pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete
GITHUB quay.io/biocontainers/bioconductor-plyranges shpc-registry automated BioContainers addition for bioconductor-plyranges 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-pmm shpc-registry automated BioContainers addition for bioconductor-pmm
GITHUB quay.io/biocontainers/bioconductor-pmp shpc-registry automated BioContainers addition for bioconductor-pmp
GITHUB quay.io/biocontainers/bioconductor-pocrcannotation.db shpc-registry automated BioContainers addition for bioconductor-pocrcannotation.db
GITHUB quay.io/biocontainers/bioconductor-podcall shpc-registry automated BioContainers addition for bioconductor-podcall
GITHUB quay.io/biocontainers/bioconductor-podkat shpc-registry automated BioContainers addition for bioconductor-podkat bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-pogos shpc-registry automated BioContainers addition for bioconductor-pogos 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-polyester shpc-registry automated BioContainers addition for bioconductor-polyester
GITHUB quay.io/biocontainers/bioconductor-polyfit shpc-registry automated BioContainers addition for bioconductor-polyfit 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-polyphen.hsapiens.dbsnp131 shpc-registry automated BioContainers addition for bioconductor-polyphen.hsapiens.dbsnp131
GITHUB quay.io/biocontainers/bioconductor-poma shpc-registry automated BioContainers addition for bioconductor-poma zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-poplarcdf shpc-registry automated BioContainers addition for bioconductor-poplarcdf
GITHUB quay.io/biocontainers/bioconductor-poplarprobe shpc-registry automated BioContainers addition for bioconductor-poplarprobe
GITHUB quay.io/biocontainers/bioconductor-porcine.db shpc-registry automated BioContainers addition for bioconductor-porcine.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-porcinecdf shpc-registry automated BioContainers addition for bioconductor-porcinecdf
GITHUB quay.io/biocontainers/bioconductor-porcineprobe shpc-registry automated BioContainers addition for bioconductor-porcineprobe
GITHUB quay.io/biocontainers/bioconductor-post shpc-registry automated BioContainers addition for bioconductor-post gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-potra shpc-registry automated BioContainers addition for bioconductor-potra x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-powerexplorer shpc-registry automated BioContainers addition for bioconductor-powerexplorer 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-powertcr shpc-registry automated BioContainers addition for bioconductor-powertcr 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-powsc shpc-registry automated BioContainers addition for bioconductor-powsc
GITHUB quay.io/biocontainers/bioconductor-ppcseq shpc-registry automated BioContainers addition for bioconductor-ppcseq
GITHUB quay.io/biocontainers/bioconductor-ppidata shpc-registry automated BioContainers addition for bioconductor-ppidata
GITHUB quay.io/biocontainers/bioconductor-ppinfer shpc-registry automated BioContainers addition for bioconductor-ppinfer wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ppistats shpc-registry automated BioContainers addition for bioconductor-ppistats
GITHUB quay.io/biocontainers/bioconductor-pqsfinder shpc-registry automated BioContainers addition for bioconductor-pqsfinder x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-prada shpc-registry automated BioContainers addition for bioconductor-prada 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-pram shpc-registry automated BioContainers addition for bioconductor-pram x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-prebs shpc-registry automated BioContainers addition for bioconductor-prebs pandoc
GITHUB quay.io/biocontainers/bioconductor-prebsdata shpc-registry automated BioContainers addition for bioconductor-prebsdata
GITHUB quay.io/biocontainers/bioconductor-precisetad shpc-registry automated BioContainers addition for bioconductor-precisetad
GITHUB quay.io/biocontainers/bioconductor-precisetadhub shpc-registry automated BioContainers addition for bioconductor-precisetadhub
GITHUB quay.io/biocontainers/bioconductor-precisiontrialdrawer shpc-registry automated BioContainers addition for bioconductor-precisiontrialdrawer x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-preda shpc-registry automated BioContainers addition for bioconductor-preda
GITHUB quay.io/biocontainers/bioconductor-predasampledata shpc-registry automated BioContainers addition for bioconductor-predasampledata
GITHUB quay.io/biocontainers/bioconductor-predictionet shpc-registry automated BioContainers addition for bioconductor-predictionet glpsol
GITHUB quay.io/biocontainers/bioconductor-preprocesscore shpc-registry automated BioContainers addition for bioconductor-preprocesscore
GITHUB quay.io/biocontainers/bioconductor-primeviewcdf shpc-registry automated BioContainers addition for bioconductor-primeviewcdf
GITHUB quay.io/biocontainers/bioconductor-primeviewprobe shpc-registry automated BioContainers addition for bioconductor-primeviewprobe
GITHUB quay.io/biocontainers/bioconductor-primirtss shpc-registry automated BioContainers addition for bioconductor-primirtss x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-prince shpc-registry automated BioContainers addition for bioconductor-prince zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-prize shpc-registry automated BioContainers addition for bioconductor-prize ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-proactiv shpc-registry automated BioContainers addition for bioconductor-proactiv
GITHUB quay.io/biocontainers/bioconductor-probamr shpc-registry automated BioContainers addition for bioconductor-probamr bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-probatch shpc-registry automated BioContainers addition for bioconductor-probatch x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-process shpc-registry automated BioContainers addition for bioconductor-process
GITHUB quay.io/biocontainers/bioconductor-procoil shpc-registry automated BioContainers addition for bioconductor-procoil
GITHUB quay.io/biocontainers/bioconductor-proda shpc-registry automated BioContainers addition for bioconductor-proda
GITHUB quay.io/biocontainers/bioconductor-prodata shpc-registry automated BioContainers addition for bioconductor-prodata
GITHUB quay.io/biocontainers/bioconductor-profia shpc-registry automated BioContainers addition for bioconductor-profia gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp
GITHUB quay.io/biocontainers/bioconductor-profileplyr shpc-registry automated BioContainers addition for bioconductor-profileplyr x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-profilescoredist shpc-registry automated BioContainers addition for bioconductor-profilescoredist
GITHUB quay.io/biocontainers/bioconductor-progeny shpc-registry automated BioContainers addition for bioconductor-progeny gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-projectr shpc-registry automated BioContainers addition for bioconductor-projectr x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-proloc shpc-registry automated BioContainers addition for bioconductor-proloc zipcmp, zipmerge, ziptool, gif2hdf, glpsol, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8
GITHUB quay.io/biocontainers/bioconductor-prolocdata shpc-registry automated BioContainers addition for bioconductor-prolocdata zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-prolocgui shpc-registry automated BioContainers addition for bioconductor-prolocgui zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-promise shpc-registry automated BioContainers addition for bioconductor-promise
GITHUB quay.io/biocontainers/bioconductor-proper shpc-registry automated BioContainers addition for bioconductor-proper bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-props shpc-registry automated BioContainers addition for bioconductor-props gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-prostar shpc-registry automated BioContainers addition for bioconductor-prostar zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-prostatecancercamcap shpc-registry automated BioContainers addition for bioconductor-prostatecancercamcap
GITHUB quay.io/biocontainers/bioconductor-prostatecancergrasso shpc-registry automated BioContainers addition for bioconductor-prostatecancergrasso
GITHUB quay.io/biocontainers/bioconductor-prostatecancerstockholm shpc-registry automated BioContainers addition for bioconductor-prostatecancerstockholm
GITHUB quay.io/biocontainers/bioconductor-prostatecancertaylor shpc-registry automated BioContainers addition for bioconductor-prostatecancertaylor
GITHUB quay.io/biocontainers/bioconductor-prostatecancervarambally shpc-registry automated BioContainers addition for bioconductor-prostatecancervarambally
GITHUB quay.io/biocontainers/bioconductor-prot2d shpc-registry automated BioContainers addition for bioconductor-prot2d c89, c99
GITHUB quay.io/biocontainers/bioconductor-proteasy singularity registry hpc automated addition for bioconductor-proteasy 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, jpackage, cups-config, ippeveprinter, ipptool, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner
GITHUB quay.io/biocontainers/bioconductor-proteinprofiles shpc-registry automated BioContainers addition for bioconductor-proteinprofiles
GITHUB quay.io/biocontainers/bioconductor-proteodisco shpc-registry automated BioContainers addition for bioconductor-proteodisco
GITHUB quay.io/biocontainers/bioconductor-proteomicsannotationhubdata shpc-registry automated BioContainers addition for bioconductor-proteomicsannotationhubdata gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp
GITHUB quay.io/biocontainers/bioconductor-proteomm shpc-registry automated BioContainers addition for bioconductor-proteomm x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-proteoqc shpc-registry automated BioContainers addition for bioconductor-proteoqc pandoc-citeproc, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24
GITHUB quay.io/biocontainers/bioconductor-protgear singularity registry hpc automated addition for bioconductor-protgear installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, pandoc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-protgenerics shpc-registry automated BioContainers addition for bioconductor-protgenerics tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-psea shpc-registry automated BioContainers addition for bioconductor-psea
GITHUB quay.io/biocontainers/bioconductor-psichomics shpc-registry automated BioContainers addition for bioconductor-psichomics wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-psicquic shpc-registry automated BioContainers addition for bioconductor-psicquic
GITHUB quay.io/biocontainers/bioconductor-psmatch singularity registry hpc automated addition for bioconductor-psmatch installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-psygenet2r shpc-registry automated BioContainers addition for bioconductor-psygenet2r
GITHUB quay.io/biocontainers/bioconductor-ptairdata shpc-registry automated BioContainers addition for bioconductor-ptairdata
GITHUB quay.io/biocontainers/bioconductor-ptairms shpc-registry automated BioContainers addition for bioconductor-ptairms zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-pth2o2lipids shpc-registry automated BioContainers addition for bioconductor-pth2o2lipids gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp
GITHUB quay.io/biocontainers/bioconductor-pubscore shpc-registry automated BioContainers addition for bioconductor-pubscore
GITHUB quay.io/biocontainers/bioconductor-pulsedsilac shpc-registry automated BioContainers addition for bioconductor-pulsedsilac
GITHUB quay.io/biocontainers/bioconductor-puma shpc-registry automated BioContainers addition for bioconductor-puma
GITHUB quay.io/biocontainers/bioconductor-pumadata shpc-registry automated BioContainers addition for bioconductor-pumadata
GITHUB quay.io/biocontainers/bioconductor-purecn shpc-registry automated BioContainers addition for bioconductor-purecn
GITHUB quay.io/biocontainers/bioconductor-pvac shpc-registry automated BioContainers addition for bioconductor-pvac
GITHUB quay.io/biocontainers/bioconductor-pvca shpc-registry automated BioContainers addition for bioconductor-pvca
GITHUB quay.io/biocontainers/bioconductor-pviz shpc-registry automated BioContainers addition for bioconductor-pviz
GITHUB quay.io/biocontainers/bioconductor-pwmenrich.hsapiens.background shpc-registry automated BioContainers addition for bioconductor-pwmenrich.hsapiens.background
GITHUB quay.io/biocontainers/bioconductor-pwmenrich shpc-registry automated BioContainers addition for bioconductor-pwmenrich
GITHUB quay.io/biocontainers/bioconductor-pwmenrich.mmusculus.background shpc-registry automated BioContainers addition for bioconductor-pwmenrich.mmusculus.background
GITHUB quay.io/biocontainers/bioconductor-pwomics shpc-registry automated BioContainers addition for bioconductor-pwomics
GITHUB quay.io/biocontainers/bioconductor-pwrewas.data shpc-registry automated BioContainers addition for bioconductor-pwrewas.data
GITHUB quay.io/biocontainers/bioconductor-pwrewas shpc-registry automated BioContainers addition for bioconductor-pwrewas
GITHUB quay.io/biocontainers/bioconductor-qckitfastq shpc-registry automated BioContainers addition for bioconductor-qckitfastq x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-qcmetrics shpc-registry automated BioContainers addition for bioconductor-qcmetrics pandoc
GITHUB quay.io/biocontainers/bioconductor-qdnaseq.hg19 shpc-registry automated BioContainers addition for bioconductor-qdnaseq.hg19
GITHUB quay.io/biocontainers/bioconductor-qdnaseq shpc-registry automated BioContainers addition for bioconductor-qdnaseq
GITHUB quay.io/biocontainers/bioconductor-qdnaseq.mm10 shpc-registry automated BioContainers addition for bioconductor-qdnaseq.mm10 wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-qfeatures shpc-registry automated BioContainers addition for bioconductor-qfeatures
GITHUB quay.io/biocontainers/bioconductor-qmtools singularity registry hpc automated addition for bioconductor-qmtools installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-qpcrnorm shpc-registry automated BioContainers addition for bioconductor-qpcrnorm
GITHUB quay.io/biocontainers/bioconductor-qpgraph shpc-registry automated BioContainers addition for bioconductor-qpgraph
GITHUB quay.io/biocontainers/bioconductor-qplexanalyzer shpc-registry automated BioContainers addition for bioconductor-qplexanalyzer gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp
GITHUB quay.io/biocontainers/bioconductor-qplexdata shpc-registry automated BioContainers addition for bioconductor-qplexdata gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp
GITHUB quay.io/biocontainers/bioconductor-qrqc shpc-registry automated BioContainers addition for bioconductor-qrqc
GITHUB quay.io/biocontainers/bioconductor-qsea shpc-registry automated BioContainers addition for bioconductor-qsea wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-qsmooth shpc-registry automated BioContainers addition for bioconductor-qsmooth x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-qsutils shpc-registry automated BioContainers addition for bioconductor-qsutils x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-qsvar singularity registry hpc automated addition for bioconductor-qsvar installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-qtlexperiment singularity registry hpc automated addition for bioconductor-qtlexperiment pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete
GITHUB quay.io/biocontainers/bioconductor-qtlizer shpc-registry automated BioContainers addition for bioconductor-qtlizer
GITHUB quay.io/biocontainers/bioconductor-qualifier shpc-registry automated BioContainers addition for bioconductor-qualifier gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-quantiseqr shpc-registry automated BioContainers addition for bioconductor-quantiseqr
GITHUB quay.io/biocontainers/bioconductor-quantro shpc-registry automated BioContainers addition for bioconductor-quantro
GITHUB quay.io/biocontainers/bioconductor-quantsmooth shpc-registry automated BioContainers addition for bioconductor-quantsmooth
GITHUB quay.io/biocontainers/bioconductor-quartpac shpc-registry automated BioContainers addition for bioconductor-quartpac
GITHUB quay.io/biocontainers/bioconductor-quasr shpc-registry automated BioContainers addition for bioconductor-quasr
GITHUB quay.io/biocontainers/bioconductor-quaternaryprod shpc-registry automated BioContainers addition for bioconductor-quaternaryprod ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-qubic shpc-registry automated BioContainers addition for bioconductor-qubic
GITHUB quay.io/biocontainers/bioconductor-qubicdata shpc-registry automated BioContainers addition for bioconductor-qubicdata
GITHUB quay.io/biocontainers/bioconductor-qusage shpc-registry automated BioContainers addition for bioconductor-qusage fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/bioconductor-qvalue shpc-registry automated BioContainers addition for bioconductor-qvalue tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-r10kcod.db shpc-registry automated BioContainers addition for bioconductor-r10kcod.db
GITHUB quay.io/biocontainers/bioconductor-r3cpet shpc-registry automated BioContainers addition for bioconductor-r3cpet glpsol
GITHUB quay.io/biocontainers/bioconductor-r3cseq shpc-registry automated BioContainers addition for bioconductor-r3cseq
GITHUB quay.io/biocontainers/bioconductor-r453plus1toolbox shpc-registry automated BioContainers addition for bioconductor-r453plus1toolbox
GITHUB quay.io/biocontainers/bioconductor-r4rna shpc-registry automated BioContainers addition for bioconductor-r4rna
GITHUB quay.io/biocontainers/bioconductor-radiogx shpc-registry automated BioContainers addition for bioconductor-radiogx
GITHUB quay.io/biocontainers/bioconductor-rae230a.db shpc-registry automated BioContainers addition for bioconductor-rae230a.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-rae230acdf shpc-registry automated BioContainers addition for bioconductor-rae230acdf
GITHUB quay.io/biocontainers/bioconductor-rae230aprobe shpc-registry automated BioContainers addition for bioconductor-rae230aprobe
GITHUB quay.io/biocontainers/bioconductor-rae230b.db shpc-registry automated BioContainers addition for bioconductor-rae230b.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-rae230bcdf shpc-registry automated BioContainers addition for bioconductor-rae230bcdf
GITHUB quay.io/biocontainers/bioconductor-rae230bprobe shpc-registry automated BioContainers addition for bioconductor-rae230bprobe
GITHUB quay.io/biocontainers/bioconductor-raerdata singularity registry hpc automated addition for bioconductor-raerdata pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-raex10stprobeset.db shpc-registry automated BioContainers addition for bioconductor-raex10stprobeset.db
GITHUB quay.io/biocontainers/bioconductor-raex10sttranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-raex10sttranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-raexexonprobesetlocation shpc-registry automated BioContainers addition for bioconductor-raexexonprobesetlocation
GITHUB quay.io/biocontainers/bioconductor-ragene10stprobeset.db shpc-registry automated BioContainers addition for bioconductor-ragene10stprobeset.db
GITHUB quay.io/biocontainers/bioconductor-ragene10sttranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-ragene10sttranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-ragene10stv1cdf shpc-registry automated BioContainers addition for bioconductor-ragene10stv1cdf
GITHUB quay.io/biocontainers/bioconductor-ragene10stv1probe shpc-registry automated BioContainers addition for bioconductor-ragene10stv1probe
GITHUB quay.io/biocontainers/bioconductor-ragene11stprobeset.db shpc-registry automated BioContainers addition for bioconductor-ragene11stprobeset.db
GITHUB quay.io/biocontainers/bioconductor-ragene11sttranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-ragene11sttranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-ragene20stprobeset.db shpc-registry automated BioContainers addition for bioconductor-ragene20stprobeset.db
GITHUB quay.io/biocontainers/bioconductor-ragene20sttranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-ragene20sttranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-ragene21stprobeset.db shpc-registry automated BioContainers addition for bioconductor-ragene21stprobeset.db
GITHUB quay.io/biocontainers/bioconductor-ragene21sttranscriptcluster.db shpc-registry automated BioContainers addition for bioconductor-ragene21sttranscriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-raggedexperiment shpc-registry automated BioContainers addition for bioconductor-raggedexperiment gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-raids singularity registry hpc automated addition for bioconductor-raids pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete
GITHUB quay.io/biocontainers/bioconductor-rain shpc-registry automated BioContainers addition for bioconductor-rain
GITHUB quay.io/biocontainers/bioconductor-rama shpc-registry automated BioContainers addition for bioconductor-rama
GITHUB quay.io/biocontainers/bioconductor-ramigo shpc-registry automated BioContainers addition for bioconductor-ramigo ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-ramr shpc-registry automated BioContainers addition for bioconductor-ramr
GITHUB quay.io/biocontainers/bioconductor-ramwas shpc-registry automated BioContainers addition for bioconductor-ramwas gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-randomwalkrestartmh shpc-registry automated BioContainers addition for bioconductor-randomwalkrestartmh 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-randpack shpc-registry automated BioContainers addition for bioconductor-randpack
GITHUB quay.io/biocontainers/bioconductor-randrotation shpc-registry automated BioContainers addition for bioconductor-randrotation
GITHUB quay.io/biocontainers/bioconductor-rankprod shpc-registry automated BioContainers addition for bioconductor-rankprod
GITHUB quay.io/biocontainers/bioconductor-raresim singularity registry hpc automated addition for bioconductor-raresim 2to3-3.11, f2py3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-rarevariantvis shpc-registry automated BioContainers addition for bioconductor-rarevariantvis wget
GITHUB quay.io/biocontainers/bioconductor-rariant shpc-registry automated BioContainers addition for bioconductor-rariant x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-rarr singularity registry hpc automated addition for bioconductor-rarr hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-rat.db0 shpc-registry automated BioContainers addition for bioconductor-rat.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rat2302.db shpc-registry automated BioContainers addition for bioconductor-rat2302.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-rat2302cdf shpc-registry automated BioContainers addition for bioconductor-rat2302cdf
GITHUB quay.io/biocontainers/bioconductor-rat2302frmavecs shpc-registry automated BioContainers addition for bioconductor-rat2302frmavecs
GITHUB quay.io/biocontainers/bioconductor-rat2302probe shpc-registry automated BioContainers addition for bioconductor-rat2302probe
GITHUB quay.io/biocontainers/bioconductor-ratchrloc shpc-registry automated BioContainers addition for bioconductor-ratchrloc
GITHUB quay.io/biocontainers/bioconductor-rattoxfxcdf shpc-registry automated BioContainers addition for bioconductor-rattoxfxcdf
GITHUB quay.io/biocontainers/bioconductor-rattoxfxprobe shpc-registry automated BioContainers addition for bioconductor-rattoxfxprobe
GITHUB quay.io/biocontainers/bioconductor-rattus.norvegicus shpc-registry automated BioContainers addition for bioconductor-rattus.norvegicus
GITHUB quay.io/biocontainers/bioconductor-rawrr shpc-registry automated BioContainers addition for bioconductor-rawrr aprofutil, csc, csi, illinkanalyzer, mono-hang-watchdog, vbc, mono-package-runtime, sgen-grep-binprot, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr
GITHUB quay.io/biocontainers/bioconductor-rbcbook1 shpc-registry automated BioContainers addition for bioconductor-rbcbook1
GITHUB quay.io/biocontainers/bioconductor-rbec shpc-registry automated BioContainers addition for bioconductor-rbec
GITHUB quay.io/biocontainers/bioconductor-rbgl shpc-registry automated BioContainers addition for bioconductor-rbgl
GITHUB quay.io/biocontainers/bioconductor-rbioformats singularity registry hpc automated addition for bioconductor-rbioformats jwebserver, hb-info, jpackage, tjbench, cups-config, ippeveprinter, ipptool, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, pandoc, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc
GITHUB quay.io/biocontainers/bioconductor-rbioinf shpc-registry automated BioContainers addition for bioconductor-rbioinf
GITHUB quay.io/biocontainers/bioconductor-rbiopaxparser shpc-registry automated BioContainers addition for bioconductor-rbiopaxparser
GITHUB quay.io/biocontainers/bioconductor-rblast singularity registry hpc automated addition for bioconductor-rblast x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-rbm shpc-registry automated BioContainers addition for bioconductor-rbm bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-rbowtie shpc-registry automated BioContainers addition for bioconductor-rbowtie
GITHUB quay.io/biocontainers/bioconductor-rbowtie2 shpc-registry automated BioContainers addition for bioconductor-rbowtie2
GITHUB quay.io/biocontainers/bioconductor-rbsurv shpc-registry automated BioContainers addition for bioconductor-rbsurv
GITHUB quay.io/biocontainers/bioconductor-rbwa singularity registry hpc automated addition for bioconductor-rbwa
GITHUB quay.io/biocontainers/bioconductor-rcade shpc-registry automated BioContainers addition for bioconductor-rcade
GITHUB quay.io/biocontainers/bioconductor-rcas shpc-registry automated BioContainers addition for bioconductor-rcas pandoc-citeproc, pandoc, wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rcaspar shpc-registry automated BioContainers addition for bioconductor-rcaspar
GITHUB quay.io/biocontainers/bioconductor-rcellminer shpc-registry automated BioContainers addition for bioconductor-rcellminer extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/bioconductor-rcellminerdata shpc-registry automated BioContainers addition for bioconductor-rcellminerdata gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rcgh shpc-registry automated BioContainers addition for bioconductor-rcgh wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-rchemcpp shpc-registry automated BioContainers addition for bioconductor-rchemcpp croco-0.6-config, csslint-0.6, g-ir-doc-tool, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata
GITHUB quay.io/biocontainers/bioconductor-rchyoptimyx shpc-registry automated BioContainers addition for bioconductor-rchyoptimyx
GITHUB quay.io/biocontainers/bioconductor-rcistarget shpc-registry automated BioContainers addition for bioconductor-rcistarget 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rcm shpc-registry automated BioContainers addition for bioconductor-rcm x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-rcollectl singularity registry hpc automated addition for bioconductor-rcollectl hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-rcpi shpc-registry automated BioContainers addition for bioconductor-rcpi rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, jfr, jaotc, aserver, jdeprscan, jhsdb
GITHUB quay.io/biocontainers/bioconductor-rcsl shpc-registry automated BioContainers addition for bioconductor-rcsl
GITHUB quay.io/biocontainers/bioconductor-rcwl shpc-registry automated BioContainers addition for bioconductor-rcwl 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-rcwlpipelines shpc-registry automated BioContainers addition for bioconductor-rcwlpipelines node, npm, npx, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-rcx singularity registry hpc automated addition for bioconductor-rcx glpsol
GITHUB quay.io/biocontainers/bioconductor-rcy3 shpc-registry automated BioContainers addition for bioconductor-rcy3 Cytoscape, cytoscape.sh, gen_vmoptions.sh, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool
GITHUB quay.io/biocontainers/bioconductor-rcyjs shpc-registry automated BioContainers addition for bioconductor-rcyjs gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rcytoscape shpc-registry automated BioContainers addition for bioconductor-rcytoscape tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-rdavidwebservice shpc-registry automated BioContainers addition for bioconductor-rdavidwebservice jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bioconductor-rdgidb shpc-registry automated BioContainers addition for bioconductor-rdgidb c89, c99
GITHUB quay.io/biocontainers/bioconductor-rdisop shpc-registry automated BioContainers addition for bioconductor-rdisop
GITHUB quay.io/biocontainers/bioconductor-rdrtoolbox shpc-registry automated BioContainers addition for bioconductor-rdrtoolbox
GITHUB quay.io/biocontainers/bioconductor-reactome.db shpc-registry automated BioContainers addition for bioconductor-reactome.db
GITHUB quay.io/biocontainers/bioconductor-reactomecontentservice4r shpc-registry automated BioContainers addition for bioconductor-reactomecontentservice4r x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify
GITHUB quay.io/biocontainers/bioconductor-reactomegraph4r shpc-registry automated BioContainers addition for bioconductor-reactomegraph4r x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify
GITHUB quay.io/biocontainers/bioconductor-reactomegsa.data shpc-registry automated BioContainers addition for bioconductor-reactomegsa.data geosop, geos-config, glpsol
GITHUB quay.io/biocontainers/bioconductor-reactomegsa shpc-registry automated BioContainers addition for bioconductor-reactomegsa
GITHUB quay.io/biocontainers/bioconductor-reactomepa shpc-registry automated BioContainers addition for bioconductor-reactomepa
GITHUB quay.io/biocontainers/bioconductor-readat shpc-registry automated BioContainers addition for bioconductor-readat wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-readqpcr shpc-registry automated BioContainers addition for bioconductor-readqpcr
GITHUB quay.io/biocontainers/bioconductor-reb shpc-registry automated BioContainers addition for bioconductor-reb 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rebet shpc-registry automated BioContainers addition for bioconductor-rebet x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-rebook shpc-registry automated BioContainers addition for bioconductor-rebook pandoc
GITHUB quay.io/biocontainers/bioconductor-receptloss shpc-registry automated BioContainers addition for bioconductor-receptloss
GITHUB quay.io/biocontainers/bioconductor-reconsi shpc-registry automated BioContainers addition for bioconductor-reconsi
GITHUB quay.io/biocontainers/bioconductor-recount shpc-registry automated BioContainers addition for bioconductor-recount
GITHUB quay.io/biocontainers/bioconductor-recount3 shpc-registry automated BioContainers addition for bioconductor-recount3
GITHUB quay.io/biocontainers/bioconductor-recountmethylation shpc-registry automated BioContainers addition for bioconductor-recountmethylation
GITHUB quay.io/biocontainers/bioconductor-recoup shpc-registry automated BioContainers addition for bioconductor-recoup wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-reder shpc-registry automated BioContainers addition for bioconductor-reder
GITHUB quay.io/biocontainers/bioconductor-redisparam singularity registry hpc automated addition for bioconductor-redisparam
GITHUB quay.io/biocontainers/bioconductor-redseq shpc-registry automated BioContainers addition for bioconductor-redseq
GITHUB quay.io/biocontainers/bioconductor-refnet shpc-registry automated BioContainers addition for bioconductor-refnet 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-refplus shpc-registry automated BioContainers addition for bioconductor-refplus
GITHUB quay.io/biocontainers/bioconductor-regenrich shpc-registry automated BioContainers addition for bioconductor-regenrich
GITHUB quay.io/biocontainers/bioconductor-regionalpcs singularity registry hpc automated addition for bioconductor-regionalpcs pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete
GITHUB quay.io/biocontainers/bioconductor-regionalst singularity registry hpc automated addition for bioconductor-regionalst xgboost, pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-regioner shpc-registry automated BioContainers addition for bioconductor-regioner tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-regionereloaded singularity registry hpc automated addition for bioconductor-regionereloaded installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-regionreport shpc-registry automated BioContainers addition for bioconductor-regionreport pandoc
GITHUB quay.io/biocontainers/bioconductor-regparallel shpc-registry automated BioContainers addition for bioconductor-regparallel x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-regsplice shpc-registry automated BioContainers addition for bioconductor-regsplice wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-regutools shpc-registry automated BioContainers addition for bioconductor-regutools Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jaotc, jdeprscan, jhsdb, jimage, jlink, jmod
GITHUB quay.io/biocontainers/bioconductor-remp shpc-registry automated BioContainers addition for bioconductor-remp gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-repitools shpc-registry automated BioContainers addition for bioconductor-repitools
GITHUB quay.io/biocontainers/bioconductor-reportingtools shpc-registry automated BioContainers addition for bioconductor-reportingtools
GITHUB quay.io/biocontainers/bioconductor-repviz shpc-registry automated BioContainers addition for bioconductor-repviz x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-reqon shpc-registry automated BioContainers addition for bioconductor-reqon jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bioconductor-residualmatrix shpc-registry automated BioContainers addition for bioconductor-residualmatrix
GITHUB quay.io/biocontainers/bioconductor-resolve singularity registry hpc automated addition for bioconductor-resolve installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-restfulse shpc-registry automated BioContainers addition for bioconductor-restfulse gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-restfulsedata shpc-registry automated BioContainers addition for bioconductor-restfulsedata gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-retrofit singularity registry hpc automated addition for bioconductor-retrofit hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-reusedata singularity registry hpc automated addition for bioconductor-reusedata corepack, git2, npx, node, npm, hb-info, tjbench, glpsol, pandoc
GITHUB quay.io/biocontainers/bioconductor-rexposome shpc-registry automated BioContainers addition for bioconductor-rexposome gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rfarm shpc-registry automated BioContainers addition for bioconductor-rfarm x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify
GITHUB quay.io/biocontainers/bioconductor-rfastp shpc-registry automated BioContainers addition for bioconductor-rfastp
GITHUB quay.io/biocontainers/bioconductor-rforproteomics shpc-registry automated BioContainers addition for bioconductor-rforproteomics zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-rfpred shpc-registry automated BioContainers addition for bioconductor-rfpred
GITHUB quay.io/biocontainers/bioconductor-rgadem shpc-registry automated BioContainers addition for bioconductor-rgadem
GITHUB quay.io/biocontainers/bioconductor-rgalaxy shpc-registry automated BioContainers addition for bioconductor-rgalaxy
GITHUB quay.io/biocontainers/bioconductor-rgenometracks shpc-registry automated BioContainers addition for bioconductor-rgenometracks
GITHUB quay.io/biocontainers/bioconductor-rgenometracksdata shpc-registry automated BioContainers addition for bioconductor-rgenometracksdata
GITHUB quay.io/biocontainers/bioconductor-rgin shpc-registry automated BioContainers addition for bioconductor-rgin 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rgmql shpc-registry automated BioContainers addition for bioconductor-rgmql extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/bioconductor-rgmqllib shpc-registry automated BioContainers addition for bioconductor-rgmqllib x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-rgntx singularity registry hpc automated addition for bioconductor-rgntx installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-rgoslin singularity registry hpc automated addition for bioconductor-rgoslin
GITHUB quay.io/biocontainers/bioconductor-rgraph2js shpc-registry automated BioContainers addition for bioconductor-rgraph2js
GITHUB quay.io/biocontainers/bioconductor-rgraphviz shpc-registry automated BioContainers addition for bioconductor-rgraphviz
GITHUB quay.io/biocontainers/bioconductor-rgreat shpc-registry automated BioContainers addition for bioconductor-rgreat bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-rgsea shpc-registry automated BioContainers addition for bioconductor-rgsea
GITHUB quay.io/biocontainers/bioconductor-rgsepd shpc-registry automated BioContainers addition for bioconductor-rgsepd bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-rgu34a.db shpc-registry automated BioContainers addition for bioconductor-rgu34a.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-rgu34acdf shpc-registry automated BioContainers addition for bioconductor-rgu34acdf
GITHUB quay.io/biocontainers/bioconductor-rgu34aprobe shpc-registry automated BioContainers addition for bioconductor-rgu34aprobe
GITHUB quay.io/biocontainers/bioconductor-rgu34b.db shpc-registry automated BioContainers addition for bioconductor-rgu34b.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-rgu34bcdf shpc-registry automated BioContainers addition for bioconductor-rgu34bcdf
GITHUB quay.io/biocontainers/bioconductor-rgu34bprobe shpc-registry automated BioContainers addition for bioconductor-rgu34bprobe
GITHUB quay.io/biocontainers/bioconductor-rgu34c.db shpc-registry automated BioContainers addition for bioconductor-rgu34c.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-rgu34ccdf shpc-registry automated BioContainers addition for bioconductor-rgu34ccdf
GITHUB quay.io/biocontainers/bioconductor-rgu34cprobe shpc-registry automated BioContainers addition for bioconductor-rgu34cprobe
GITHUB quay.io/biocontainers/bioconductor-rguatlas4k.db shpc-registry automated BioContainers addition for bioconductor-rguatlas4k.db
GITHUB quay.io/biocontainers/bioconductor-rgug4105a.db shpc-registry automated BioContainers addition for bioconductor-rgug4105a.db
GITHUB quay.io/biocontainers/bioconductor-rgug4130a.db shpc-registry automated BioContainers addition for bioconductor-rgug4130a.db
GITHUB quay.io/biocontainers/bioconductor-rgug4131a.db shpc-registry automated BioContainers addition for bioconductor-rgug4131a.db
GITHUB quay.io/biocontainers/bioconductor-rhdf5 shpc-registry automated BioContainers addition for bioconductor-rhdf5
GITHUB quay.io/biocontainers/bioconductor-rhdf5client shpc-registry automated BioContainers addition for bioconductor-rhdf5client gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rhdf5filters shpc-registry automated BioContainers addition for bioconductor-rhdf5filters
GITHUB quay.io/biocontainers/bioconductor-rhdf5lib shpc-registry automated BioContainers addition for bioconductor-rhdf5lib gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rhesus.db0 shpc-registry automated BioContainers addition for bioconductor-rhesus.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rhesuscdf shpc-registry automated BioContainers addition for bioconductor-rhesuscdf
GITHUB quay.io/biocontainers/bioconductor-rhesusprobe shpc-registry automated BioContainers addition for bioconductor-rhesusprobe
GITHUB quay.io/biocontainers/bioconductor-rheumaticconditionwollbold shpc-registry automated BioContainers addition for bioconductor-rheumaticconditionwollbold
GITHUB quay.io/biocontainers/bioconductor-rhinotyper singularity registry hpc automated addition for bioconductor-rhinotyper x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-rhisat2 shpc-registry automated BioContainers addition for bioconductor-rhisat2 x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-rhtslib shpc-registry automated BioContainers addition for bioconductor-rhtslib tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-rhvdm shpc-registry automated BioContainers addition for bioconductor-rhvdm gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ri16cod.db shpc-registry automated BioContainers addition for bioconductor-ri16cod.db
GITHUB quay.io/biocontainers/bioconductor-ribocrypt shpc-registry automated BioContainers addition for bioconductor-ribocrypt
GITHUB quay.io/biocontainers/bioconductor-ribodipa shpc-registry automated BioContainers addition for bioconductor-ribodipa
GITHUB quay.io/biocontainers/bioconductor-riboprofiling shpc-registry automated BioContainers addition for bioconductor-riboprofiling my_print_defaults, mysql_config, perror, wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-ribor shpc-registry automated BioContainers addition for bioconductor-ribor
GITHUB quay.io/biocontainers/bioconductor-riboseqr shpc-registry automated BioContainers addition for bioconductor-riboseqr
GITHUB quay.io/biocontainers/bioconductor-ribosomaldatabaseproject11.5mgdb shpc-registry automated BioContainers addition for bioconductor-ribosomaldatabaseproject11.5mgdb x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-ribosomeprofilingqc shpc-registry automated BioContainers addition for bioconductor-ribosomeprofilingqc
GITHUB quay.io/biocontainers/bioconductor-ricecdf shpc-registry automated BioContainers addition for bioconductor-ricecdf
GITHUB quay.io/biocontainers/bioconductor-riceprobe shpc-registry automated BioContainers addition for bioconductor-riceprobe
GITHUB quay.io/biocontainers/bioconductor-rifi singularity registry hpc automated addition for bioconductor-rifi installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-rificomparative singularity registry hpc automated addition for bioconductor-rificomparative git2, hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1
GITHUB quay.io/biocontainers/bioconductor-rimmport shpc-registry automated BioContainers addition for bioconductor-rimmport ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-ringo shpc-registry automated BioContainers addition for bioconductor-ringo
GITHUB quay.io/biocontainers/bioconductor-ripat shpc-registry automated BioContainers addition for bioconductor-ripat
GITHUB quay.io/biocontainers/bioconductor-ripseeker shpc-registry automated BioContainers addition for bioconductor-ripseeker gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ripseekerdata shpc-registry automated BioContainers addition for bioconductor-ripseekerdata gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-risa shpc-registry automated BioContainers addition for bioconductor-risa zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-ritan shpc-registry automated BioContainers addition for bioconductor-ritan gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ritandata shpc-registry automated BioContainers addition for bioconductor-ritandata gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-river shpc-registry automated BioContainers addition for bioconductor-river gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rjmcmcnucleosomes shpc-registry automated BioContainers addition for bioconductor-rjmcmcnucleosomes gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rlassocox shpc-registry automated BioContainers addition for bioconductor-rlassocox
GITHUB quay.io/biocontainers/bioconductor-rlhub shpc-registry automated BioContainers addition for bioconductor-rlhub
GITHUB quay.io/biocontainers/bioconductor-rlmm shpc-registry automated BioContainers addition for bioconductor-rlmm
GITHUB quay.io/biocontainers/bioconductor-rlseq shpc-registry automated BioContainers addition for bioconductor-rlseq
GITHUB quay.io/biocontainers/bioconductor-rmagpie shpc-registry automated BioContainers addition for bioconductor-rmagpie
GITHUB quay.io/biocontainers/bioconductor-rmassbank shpc-registry automated BioContainers addition for bioconductor-rmassbank obfitall, obmm, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop
GITHUB quay.io/biocontainers/bioconductor-rmassbankdata shpc-registry automated BioContainers addition for bioconductor-rmassbankdata
GITHUB quay.io/biocontainers/bioconductor-rmat shpc-registry automated BioContainers addition for bioconductor-rmat gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rmelting shpc-registry automated BioContainers addition for bioconductor-rmelting jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bioconductor-rmir.hs.mirna shpc-registry automated BioContainers addition for bioconductor-rmir.hs.mirna x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-rmir.hsa shpc-registry automated BioContainers addition for bioconductor-rmir.hsa
GITHUB quay.io/biocontainers/bioconductor-rmir shpc-registry automated BioContainers addition for bioconductor-rmir
GITHUB quay.io/biocontainers/bioconductor-rmmquant shpc-registry automated BioContainers addition for bioconductor-rmmquant pandoc, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-rmspc shpc-registry automated BioContainers addition for bioconductor-rmspc
GITHUB quay.io/biocontainers/bioconductor-rnaagecalc shpc-registry automated BioContainers addition for bioconductor-rnaagecalc
GITHUB quay.io/biocontainers/bioconductor-rnadecay shpc-registry automated BioContainers addition for bioconductor-rnadecay 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rnaeditr shpc-registry automated BioContainers addition for bioconductor-rnaeditr
GITHUB quay.io/biocontainers/bioconductor-rnagilentdesign028282.db shpc-registry automated BioContainers addition for bioconductor-rnagilentdesign028282.db
GITHUB quay.io/biocontainers/bioconductor-rnainteract shpc-registry automated BioContainers addition for bioconductor-rnainteract
GITHUB quay.io/biocontainers/bioconductor-rnainteractmapk shpc-registry automated BioContainers addition for bioconductor-rnainteractmapk
GITHUB quay.io/biocontainers/bioconductor-rnaither shpc-registry automated BioContainers addition for bioconductor-rnaither 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rnamodr.alkanilineseq shpc-registry automated BioContainers addition for bioconductor-rnamodr.alkanilineseq
GITHUB quay.io/biocontainers/bioconductor-rnamodr.data shpc-registry automated BioContainers addition for bioconductor-rnamodr.data
GITHUB quay.io/biocontainers/bioconductor-rnamodr shpc-registry automated BioContainers addition for bioconductor-rnamodr
GITHUB quay.io/biocontainers/bioconductor-rnamodr.ml shpc-registry automated BioContainers addition for bioconductor-rnamodr.ml
GITHUB quay.io/biocontainers/bioconductor-rnamodr.ribomethseq shpc-registry automated BioContainers addition for bioconductor-rnamodr.ribomethseq
GITHUB quay.io/biocontainers/bioconductor-rnaprobr shpc-registry automated BioContainers addition for bioconductor-rnaprobr my_print_defaults, mysql_config, perror, wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-rnasense shpc-registry automated BioContainers addition for bioconductor-rnasense
GITHUB quay.io/biocontainers/bioconductor-rnaseqcomp shpc-registry automated BioContainers addition for bioconductor-rnaseqcomp tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-rnaseqcovarimpute singularity registry hpc automated addition for bioconductor-rnaseqcovarimpute pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-rnaseqdata.hnrnpc.bam.chr14 shpc-registry automated BioContainers addition for bioconductor-rnaseqdata.hnrnpc.bam.chr14
GITHUB quay.io/biocontainers/bioconductor-rnaseqmap shpc-registry automated BioContainers addition for bioconductor-rnaseqmap 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rnaseqpower shpc-registry automated BioContainers addition for bioconductor-rnaseqpower
GITHUB quay.io/biocontainers/bioconductor-rnaseqr shpc-registry automated BioContainers addition for bioconductor-rnaseqr rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-rnaseqrdata shpc-registry automated BioContainers addition for bioconductor-rnaseqrdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-rnaseqsamplesize shpc-registry automated BioContainers addition for bioconductor-rnaseqsamplesize
GITHUB quay.io/biocontainers/bioconductor-rnaseqsamplesizedata shpc-registry automated BioContainers addition for bioconductor-rnaseqsamplesizedata
GITHUB quay.io/biocontainers/bioconductor-rnbeads.hg19 shpc-registry automated BioContainers addition for bioconductor-rnbeads.hg19
GITHUB quay.io/biocontainers/bioconductor-rnbeads.hg38 shpc-registry automated BioContainers addition for bioconductor-rnbeads.hg38
GITHUB quay.io/biocontainers/bioconductor-rnbeads shpc-registry automated BioContainers addition for bioconductor-rnbeads
GITHUB quay.io/biocontainers/bioconductor-rnbeads.mm10 shpc-registry automated BioContainers addition for bioconductor-rnbeads.mm10
GITHUB quay.io/biocontainers/bioconductor-rnbeads.mm9 shpc-registry automated BioContainers addition for bioconductor-rnbeads.mm9
GITHUB quay.io/biocontainers/bioconductor-rnbeads.rn5 shpc-registry automated BioContainers addition for bioconductor-rnbeads.rn5
GITHUB quay.io/biocontainers/bioconductor-rnits shpc-registry automated BioContainers addition for bioconductor-rnits
GITHUB quay.io/biocontainers/bioconductor-rnu34.db shpc-registry automated BioContainers addition for bioconductor-rnu34.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-rnu34cdf shpc-registry automated BioContainers addition for bioconductor-rnu34cdf
GITHUB quay.io/biocontainers/bioconductor-rnu34probe shpc-registry automated BioContainers addition for bioconductor-rnu34probe
GITHUB quay.io/biocontainers/bioconductor-roar shpc-registry automated BioContainers addition for bioconductor-roar x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-roastgsa singularity registry hpc automated addition for bioconductor-roastgsa pcre2posix_test, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-roberts2005annotation.db shpc-registry automated BioContainers addition for bioconductor-roberts2005annotation.db
GITHUB quay.io/biocontainers/bioconductor-roc shpc-registry automated BioContainers addition for bioconductor-roc
GITHUB quay.io/biocontainers/bioconductor-rocpai shpc-registry automated BioContainers addition for bioconductor-rocpai
GITHUB quay.io/biocontainers/bioconductor-rolde singularity registry hpc automated addition for bioconductor-rolde installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-roleswitch shpc-registry automated BioContainers addition for bioconductor-roleswitch 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rols shpc-registry automated BioContainers addition for bioconductor-rols ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-rontotools shpc-registry automated BioContainers addition for bioconductor-rontotools
GITHUB quay.io/biocontainers/bioconductor-ropls shpc-registry automated BioContainers addition for bioconductor-ropls tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-roseq shpc-registry automated BioContainers addition for bioconductor-roseq
GITHUB quay.io/biocontainers/bioconductor-rots shpc-registry automated BioContainers addition for bioconductor-rots
GITHUB quay.io/biocontainers/bioconductor-rpa shpc-registry automated BioContainers addition for bioconductor-rpa pandoc
GITHUB quay.io/biocontainers/bioconductor-rprimer singularity registry hpc automated addition for bioconductor-rprimer installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-rprotobuflib shpc-registry automated BioContainers addition for bioconductor-rprotobuflib
GITHUB quay.io/biocontainers/bioconductor-rpsixml shpc-registry automated BioContainers addition for bioconductor-rpsixml
GITHUB quay.io/biocontainers/bioconductor-rpx shpc-registry automated BioContainers addition for bioconductor-rpx
GITHUB quay.io/biocontainers/bioconductor-rqc shpc-registry automated BioContainers addition for bioconductor-rqc pandoc-server, pandoc
GITHUB quay.io/biocontainers/bioconductor-rqt shpc-registry automated BioContainers addition for bioconductor-rqt wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rqubic shpc-registry automated BioContainers addition for bioconductor-rqubic
GITHUB quay.io/biocontainers/bioconductor-rrbsdata shpc-registry automated BioContainers addition for bioconductor-rrbsdata 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rrdp shpc-registry automated BioContainers addition for bioconductor-rrdp jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bioconductor-rrdpdata shpc-registry automated BioContainers addition for bioconductor-rrdpdata jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs, pack200
GITHUB quay.io/biocontainers/bioconductor-rrho shpc-registry automated BioContainers addition for bioconductor-rrho
GITHUB quay.io/biocontainers/bioconductor-rrvgo shpc-registry automated BioContainers addition for bioconductor-rrvgo
GITHUB quay.io/biocontainers/bioconductor-rsamtools shpc-registry automated BioContainers addition for bioconductor-rsamtools x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-rsbml shpc-registry automated BioContainers addition for bioconductor-rsbml
GITHUB quay.io/biocontainers/bioconductor-rscudo shpc-registry automated BioContainers addition for bioconductor-rscudo x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-rsemmed shpc-registry automated BioContainers addition for bioconductor-rsemmed
GITHUB quay.io/biocontainers/bioconductor-rseqan shpc-registry automated BioContainers addition for bioconductor-rseqan 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rsffreader shpc-registry automated BioContainers addition for bioconductor-rsffreader gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rsubread shpc-registry automated BioContainers addition for bioconductor-rsubread
GITHUB quay.io/biocontainers/bioconductor-rsvsim shpc-registry automated BioContainers addition for bioconductor-rsvsim
GITHUB quay.io/biocontainers/bioconductor-rsweep shpc-registry automated BioContainers addition for bioconductor-rsweep
GITHUB quay.io/biocontainers/bioconductor-rta10probeset.db shpc-registry automated BioContainers addition for bioconductor-rta10probeset.db
GITHUB quay.io/biocontainers/bioconductor-rta10transcriptcluster.db shpc-registry automated BioContainers addition for bioconductor-rta10transcriptcluster.db
GITHUB quay.io/biocontainers/bioconductor-rtandem shpc-registry automated BioContainers addition for bioconductor-rtandem 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rtca shpc-registry automated BioContainers addition for bioconductor-rtca
GITHUB quay.io/biocontainers/bioconductor-rtcga.clinical shpc-registry automated BioContainers addition for bioconductor-rtcga.clinical f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-rtcga.cnv shpc-registry automated BioContainers addition for bioconductor-rtcga.cnv f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-rtcga shpc-registry automated BioContainers addition for bioconductor-rtcga
GITHUB quay.io/biocontainers/bioconductor-rtcga.methylation shpc-registry automated BioContainers addition for bioconductor-rtcga.methylation f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-rtcga.mirnaseq shpc-registry automated BioContainers addition for bioconductor-rtcga.mirnaseq f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-rtcga.mrna shpc-registry automated BioContainers addition for bioconductor-rtcga.mrna wget
GITHUB quay.io/biocontainers/bioconductor-rtcga.mutations shpc-registry automated BioContainers addition for bioconductor-rtcga.mutations f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-rtcga.pancan12 shpc-registry automated BioContainers addition for bioconductor-rtcga.pancan12 f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-rtcga.rnaseq shpc-registry automated BioContainers addition for bioconductor-rtcga.rnaseq f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-rtcga.rppa shpc-registry automated BioContainers addition for bioconductor-rtcga.rppa f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-rtcgatoolbox shpc-registry automated BioContainers addition for bioconductor-rtcgatoolbox wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-rtn shpc-registry automated BioContainers addition for bioconductor-rtn gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rtnduals shpc-registry automated BioContainers addition for bioconductor-rtnduals gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rtnsurvival shpc-registry automated BioContainers addition for bioconductor-rtnsurvival gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rtopper shpc-registry automated BioContainers addition for bioconductor-rtopper
GITHUB quay.io/biocontainers/bioconductor-rtpca shpc-registry automated BioContainers addition for bioconductor-rtpca
GITHUB quay.io/biocontainers/bioconductor-rtracklayer shpc-registry automated BioContainers addition for bioconductor-rtracklayer
GITHUB quay.io/biocontainers/bioconductor-rtreemix shpc-registry automated BioContainers addition for bioconductor-rtreemix
GITHUB quay.io/biocontainers/bioconductor-rtrm shpc-registry automated BioContainers addition for bioconductor-rtrm
GITHUB quay.io/biocontainers/bioconductor-rtrmui shpc-registry automated BioContainers addition for bioconductor-rtrmui
GITHUB quay.io/biocontainers/bioconductor-rtu34.db shpc-registry automated BioContainers addition for bioconductor-rtu34.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-rtu34cdf shpc-registry automated BioContainers addition for bioconductor-rtu34cdf
GITHUB quay.io/biocontainers/bioconductor-rtu34probe shpc-registry automated BioContainers addition for bioconductor-rtu34probe
GITHUB quay.io/biocontainers/bioconductor-runibic shpc-registry automated BioContainers addition for bioconductor-runibic gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ruvcorr shpc-registry automated BioContainers addition for bioconductor-ruvcorr
GITHUB quay.io/biocontainers/bioconductor-ruvnormalize shpc-registry automated BioContainers addition for bioconductor-ruvnormalize
GITHUB quay.io/biocontainers/bioconductor-ruvnormalizedata shpc-registry automated BioContainers addition for bioconductor-ruvnormalizedata x86_64-conda-linux-gnu-gfortran.bin, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ruvseq shpc-registry automated BioContainers addition for bioconductor-ruvseq
GITHUB quay.io/biocontainers/bioconductor-rvisdiff singularity registry hpc automated addition for bioconductor-rvisdiff pcre2posix_test, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-rvs shpc-registry automated BioContainers addition for bioconductor-rvs gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-rwgcod.db shpc-registry automated BioContainers addition for bioconductor-rwgcod.db
GITHUB quay.io/biocontainers/bioconductor-rwikipathways shpc-registry automated BioContainers addition for bioconductor-rwikipathways 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-s4arrays singularity registry hpc automated addition for bioconductor-s4arrays hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-s4vectors shpc-registry automated BioContainers addition for bioconductor-s4vectors pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-safe shpc-registry automated BioContainers addition for bioconductor-safe
GITHUB quay.io/biocontainers/bioconductor-sagenhaft shpc-registry automated BioContainers addition for bioconductor-sagenhaft
GITHUB quay.io/biocontainers/bioconductor-sagx shpc-registry automated BioContainers addition for bioconductor-sagx x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-saigegds shpc-registry automated BioContainers addition for bioconductor-saigegds
GITHUB quay.io/biocontainers/bioconductor-samexplorer shpc-registry automated BioContainers addition for bioconductor-samexplorer gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-sampleclassifier shpc-registry automated BioContainers addition for bioconductor-sampleclassifier gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-sampleclassifierdata shpc-registry automated BioContainers addition for bioconductor-sampleclassifierdata gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-samspectral shpc-registry automated BioContainers addition for bioconductor-samspectral
GITHUB quay.io/biocontainers/bioconductor-sangeranalyser shpc-registry automated BioContainers addition for bioconductor-sangeranalyser pandoc
GITHUB quay.io/biocontainers/bioconductor-sangerseqr shpc-registry automated BioContainers addition for bioconductor-sangerseqr
GITHUB quay.io/biocontainers/bioconductor-santa shpc-registry automated BioContainers addition for bioconductor-santa glpsol
GITHUB quay.io/biocontainers/bioconductor-sapfinder shpc-registry automated BioContainers addition for bioconductor-sapfinder 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-sarc singularity registry hpc automated addition for bioconductor-sarc pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-sarks shpc-registry automated BioContainers addition for bioconductor-sarks jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bioconductor-saturn shpc-registry automated BioContainers addition for bioconductor-saturn
GITHUB quay.io/biocontainers/bioconductor-saureuscdf shpc-registry automated BioContainers addition for bioconductor-saureuscdf
GITHUB quay.io/biocontainers/bioconductor-saureusprobe shpc-registry automated BioContainers addition for bioconductor-saureusprobe
GITHUB quay.io/biocontainers/bioconductor-savr shpc-registry automated BioContainers addition for bioconductor-savr
GITHUB quay.io/biocontainers/bioconductor-sbgnview.data shpc-registry automated BioContainers addition for bioconductor-sbgnview.data pandoc
GITHUB quay.io/biocontainers/bioconductor-sbgnview shpc-registry automated BioContainers addition for bioconductor-sbgnview
GITHUB quay.io/biocontainers/bioconductor-sbmlr shpc-registry automated BioContainers addition for bioconductor-sbmlr
GITHUB quay.io/biocontainers/bioconductor-sc3-scripts shpc-registry automated BioContainers addition for bioconductor-sc3-scripts bioconductor-sc3-scripts-post-install-tests.bats, bioconductor-sc3-scripts-post-install-tests.sh, bioconductor-scater-scripts-post-install-tests.bats, bioconductor-scater-scripts-post-install-tests.sh, bioconductor-singlecellexperiment-scripts-post-install-tests.sh, sc3-sc3-calc-biology.R, sc3-sc3-calc-consens.R, sc3-sc3-calc-dists.R, sc3-sc3-calc-transfs.R, sc3-sc3-estimate-k.R, sc3-sc3-kmeans.R, sc3-sc3-prepare.R, scater-calculate-cpm.R, scater-calculate-qc-metrics.R, scater-extract-qc-metric.R, scater-filter.R, scater-is-outlier.R, scater-normalize.R, scater-plot-reduced-dim.R, scater-run-pca.R, scater-run-tsne.R, singlecellexperiment-create-single-cell-experiment.R, singlecellexperiment-get-random-cells.R, singlecellexperiment-get-random-genes.R, conda_build.sh, wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-sc3 shpc-registry automated BioContainers addition for bioconductor-sc3
GITHUB quay.io/biocontainers/bioconductor-scale4c shpc-registry automated BioContainers addition for bioconductor-scale4c gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-scaledmatrix shpc-registry automated BioContainers addition for bioconductor-scaledmatrix
GITHUB quay.io/biocontainers/bioconductor-scalign shpc-registry automated BioContainers addition for bioconductor-scalign 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv
GITHUB quay.io/biocontainers/bioconductor-scan.upc shpc-registry automated BioContainers addition for bioconductor-scan.upc
GITHUB quay.io/biocontainers/bioconductor-scanmir shpc-registry automated BioContainers addition for bioconductor-scanmir
GITHUB quay.io/biocontainers/bioconductor-scanmirapp shpc-registry automated BioContainers addition for bioconductor-scanmirapp
GITHUB quay.io/biocontainers/bioconductor-scanmirdata shpc-registry automated BioContainers addition for bioconductor-scanmirdata
GITHUB quay.io/biocontainers/bioconductor-scannotatr shpc-registry automated BioContainers addition for bioconductor-scannotatr
GITHUB quay.io/biocontainers/bioconductor-scannotatr.models shpc-registry automated BioContainers addition for bioconductor-scannotatr.models
GITHUB quay.io/biocontainers/bioconductor-scanvis shpc-registry automated BioContainers addition for bioconductor-scanvis
GITHUB quay.io/biocontainers/bioconductor-scarray shpc-registry automated BioContainers addition for bioconductor-scarray
GITHUB quay.io/biocontainers/bioconductor-scarray.sat singularity registry hpc automated addition for bioconductor-scarray.sat geosop, geos-config, hb-info, tjbench, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1
GITHUB quay.io/biocontainers/bioconductor-scatac.explorer shpc-registry automated BioContainers addition for bioconductor-scatac.explorer
GITHUB quay.io/biocontainers/bioconductor-scate shpc-registry automated BioContainers addition for bioconductor-scate xgboost
GITHUB quay.io/biocontainers/bioconductor-scatedata shpc-registry automated BioContainers addition for bioconductor-scatedata
GITHUB quay.io/biocontainers/bioconductor-scater-scripts shpc-registry automated BioContainers addition for bioconductor-scater-scripts bioconductor-scater-scripts-post-install-tests.bats, bioconductor-scater-scripts-post-install-tests.sh, bioconductor-singlecellexperiment-scripts-post-install-tests.sh, scater-calculate-cpm.R, scater-calculate-qc-metrics.R, scater-extract-qc-metric.R, scater-filter.R, scater-is-outlier.R, scater-normalize.R, scater-plot-reduced-dim.R, scater-run-pca.R, scater-run-tsne.R, singlecellexperiment-create-single-cell-experiment.R, singlecellexperiment-get-random-cells.R, singlecellexperiment-get-random-genes.R, conda_build.sh, wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-scater shpc-registry automated BioContainers addition for bioconductor-scater
GITHUB quay.io/biocontainers/bioconductor-scatterhatch shpc-registry automated BioContainers addition for bioconductor-scatterhatch
GITHUB quay.io/biocontainers/bioconductor-scbfa shpc-registry automated BioContainers addition for bioconductor-scbfa
GITHUB quay.io/biocontainers/bioconductor-scbn shpc-registry automated BioContainers addition for bioconductor-scbn x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-scbubbletree singularity registry hpc automated addition for bioconductor-scbubbletree geosop, geos-config, glpsol
GITHUB quay.io/biocontainers/bioconductor-sccb2 shpc-registry automated BioContainers addition for bioconductor-sccb2
GITHUB quay.io/biocontainers/bioconductor-scclassifr shpc-registry automated BioContainers addition for bioconductor-scclassifr
GITHUB quay.io/biocontainers/bioconductor-scclassify shpc-registry automated BioContainers addition for bioconductor-scclassify
GITHUB quay.io/biocontainers/bioconductor-sccomp singularity registry hpc automated addition for bioconductor-sccomp geosop, geos-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-scdataviz shpc-registry automated BioContainers addition for bioconductor-scdataviz
GITHUB quay.io/biocontainers/bioconductor-scdblfinder shpc-registry automated BioContainers addition for bioconductor-scdblfinder xgboost
GITHUB quay.io/biocontainers/bioconductor-scdd shpc-registry automated BioContainers addition for bioconductor-scdd gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-scddboost singularity registry hpc automated addition for bioconductor-scddboost installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-scde shpc-registry automated BioContainers addition for bioconductor-scde
GITHUB quay.io/biocontainers/bioconductor-scdesign3 singularity registry hpc automated addition for bioconductor-scdesign3 pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete
GITHUB quay.io/biocontainers/bioconductor-scdotplot singularity registry hpc automated addition for bioconductor-scdotplot pandoc-lua, x86_64-conda-linux-gnu.cfg, pandoc-server, idle3.13, pydoc3.13, python3.13, python3.13-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-scds shpc-registry automated BioContainers addition for bioconductor-scds xgboost, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-scfa shpc-registry automated BioContainers addition for bioconductor-scfa
GITHUB quay.io/biocontainers/bioconductor-scfeaturefilter shpc-registry automated BioContainers addition for bioconductor-scfeaturefilter 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-scfeatures singularity registry hpc automated addition for bioconductor-scfeatures geosop, x86_64-conda-linux-gnu-pkg-config, geos-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, hb-info, dvipdf, eps2eps, gs
GITHUB quay.io/biocontainers/bioconductor-scfind shpc-registry automated BioContainers addition for bioconductor-scfind 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-scgps shpc-registry automated BioContainers addition for bioconductor-scgps
GITHUB quay.io/biocontainers/bioconductor-schex shpc-registry automated BioContainers addition for bioconductor-schex testepsg, gdal_create, pdfsig, pg_standby, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach
GITHUB quay.io/biocontainers/bioconductor-schot shpc-registry automated BioContainers addition for bioconductor-schot
GITHUB quay.io/biocontainers/bioconductor-scider singularity registry hpc automated addition for bioconductor-scider bsdunzip, gdal_footprint, minigzip, minizip, protoc-24.4.0, sozip, h5fuse.sh, pg_amcheck, pcre2posix_test, gdal_create, pdfsig, bsdcat, bsdcpio, bsdtar, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pdfattach, pg_verifybackup, projsync, gdal-config, gdal_contour, gdal_grid, gdal_rasterize
GITHUB quay.io/biocontainers/bioconductor-scifer singularity registry hpc automated addition for bioconductor-scifer installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, pandoc, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-scisi shpc-registry automated BioContainers addition for bioconductor-scisi
GITHUB quay.io/biocontainers/bioconductor-sclcbam shpc-registry automated BioContainers addition for bioconductor-sclcbam
GITHUB quay.io/biocontainers/bioconductor-scmageck shpc-registry automated BioContainers addition for bioconductor-scmageck
GITHUB quay.io/biocontainers/bioconductor-scmap shpc-registry automated BioContainers addition for bioconductor-scmap gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-scmerge shpc-registry automated BioContainers addition for bioconductor-scmerge x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-scmeth shpc-registry automated BioContainers addition for bioconductor-scmeth pandoc-citeproc, pandoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-scmitomut singularity registry hpc automated addition for bioconductor-scmitomut x86_64-conda-linux-gnu.cfg, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-scmultiome singularity registry hpc automated addition for bioconductor-scmultiome hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1
GITHUB quay.io/biocontainers/bioconductor-scmultisim singularity registry hpc automated addition for bioconductor-scmultisim x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-scnorm shpc-registry automated BioContainers addition for bioconductor-scnorm gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-scone shpc-registry automated BioContainers addition for bioconductor-scone f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, gio-launch-desktop
GITHUB quay.io/biocontainers/bioconductor-sconify shpc-registry automated BioContainers addition for bioconductor-sconify 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, c89, c99
GITHUB quay.io/biocontainers/bioconductor-scope shpc-registry automated BioContainers addition for bioconductor-scope
GITHUB quay.io/biocontainers/bioconductor-scoreinvhap shpc-registry automated BioContainers addition for bioconductor-scoreinvhap gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-scoup singularity registry hpc automated addition for bioconductor-scoup x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-scp shpc-registry automated BioContainers addition for bioconductor-scp
GITHUB quay.io/biocontainers/bioconductor-scpca shpc-registry automated BioContainers addition for bioconductor-scpca
GITHUB quay.io/biocontainers/bioconductor-scpdata shpc-registry automated BioContainers addition for bioconductor-scpdata glpsol
GITHUB quay.io/biocontainers/bioconductor-scpipe shpc-registry automated BioContainers addition for bioconductor-scpipe gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-scran shpc-registry automated BioContainers addition for bioconductor-scran wget
GITHUB quay.io/biocontainers/bioconductor-screclassify shpc-registry automated BioContainers addition for bioconductor-screclassify
GITHUB quay.io/biocontainers/bioconductor-screcover shpc-registry automated BioContainers addition for bioconductor-screcover x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-screencounter singularity registry hpc automated addition for bioconductor-screencounter hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-screenr singularity registry hpc automated addition for bioconductor-screenr
GITHUB quay.io/biocontainers/bioconductor-screpertoire shpc-registry automated BioContainers addition for bioconductor-screpertoire
GITHUB quay.io/biocontainers/bioconductor-scrnaseq shpc-registry automated BioContainers addition for bioconductor-scrnaseq
GITHUB quay.io/biocontainers/bioconductor-scrnaseqapp singularity registry hpc automated addition for bioconductor-scrnaseqapp h5delete, geosop, aec, geos-config, hb-info, tjbench, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, h5clear, h5format_convert, h5watch
GITHUB quay.io/biocontainers/bioconductor-scruff shpc-registry automated BioContainers addition for bioconductor-scruff x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-scry shpc-registry automated BioContainers addition for bioconductor-scry
GITHUB quay.io/biocontainers/bioconductor-scshapes shpc-registry automated BioContainers addition for bioconductor-scshapes
GITHUB quay.io/biocontainers/bioconductor-scsr shpc-registry automated BioContainers addition for bioconductor-scsr 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-sctensor shpc-registry automated BioContainers addition for bioconductor-sctensor testepsg, gdal_create, pdfsig, pg_standby, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach
GITHUB quay.io/biocontainers/bioconductor-sctgif shpc-registry automated BioContainers addition for bioconductor-sctgif pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach, applygeo
GITHUB quay.io/biocontainers/bioconductor-scthi.data shpc-registry automated BioContainers addition for bioconductor-scthi.data
GITHUB quay.io/biocontainers/bioconductor-scthi shpc-registry automated BioContainers addition for bioconductor-scthi
GITHUB quay.io/biocontainers/bioconductor-sctreeviz shpc-registry automated BioContainers addition for bioconductor-sctreeviz
GITHUB quay.io/biocontainers/bioconductor-scuttle shpc-registry automated BioContainers addition for bioconductor-scuttle
GITHUB quay.io/biocontainers/bioconductor-scvir singularity registry hpc automated addition for bioconductor-scvir hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-sdams shpc-registry automated BioContainers addition for bioconductor-sdams 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-seahtrue singularity registry hpc automated addition for bioconductor-seahtrue x86_64-conda-linux-gnu.cfg, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-sechm shpc-registry automated BioContainers addition for bioconductor-sechm
GITHUB quay.io/biocontainers/bioconductor-segmenter shpc-registry automated BioContainers addition for bioconductor-segmenter
GITHUB quay.io/biocontainers/bioconductor-segmentseq shpc-registry automated BioContainers addition for bioconductor-segmentseq
GITHUB quay.io/biocontainers/bioconductor-selectksigs shpc-registry automated BioContainers addition for bioconductor-selectksigs jags
GITHUB quay.io/biocontainers/bioconductor-selex shpc-registry automated BioContainers addition for bioconductor-selex jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bioconductor-semdist shpc-registry automated BioContainers addition for bioconductor-semdist
GITHUB quay.io/biocontainers/bioconductor-semisup shpc-registry automated BioContainers addition for bioconductor-semisup gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-sepa shpc-registry automated BioContainers addition for bioconductor-sepa wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-sepira shpc-registry automated BioContainers addition for bioconductor-sepira 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-seq.hotspot singularity registry hpc automated addition for bioconductor-seq.hotspot hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-seq2pathway.data shpc-registry automated BioContainers addition for bioconductor-seq2pathway.data
GITHUB quay.io/biocontainers/bioconductor-seq2pathway shpc-registry automated BioContainers addition for bioconductor-seq2pathway
GITHUB quay.io/biocontainers/bioconductor-seqarchr singularity registry hpc automated addition for bioconductor-seqarchr installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-seqarchrplus singularity registry hpc automated addition for bioconductor-seqarchrplus f2py3.11, hb-info, tjbench, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1
GITHUB quay.io/biocontainers/bioconductor-seqarray shpc-registry automated BioContainers addition for bioconductor-seqarray
GITHUB quay.io/biocontainers/bioconductor-seqbias shpc-registry automated BioContainers addition for bioconductor-seqbias
GITHUB quay.io/biocontainers/bioconductor-seqc shpc-registry automated BioContainers addition for bioconductor-seqc
GITHUB quay.io/biocontainers/bioconductor-seqcat shpc-registry automated BioContainers addition for bioconductor-seqcat gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-seqcna.annot shpc-registry automated BioContainers addition for bioconductor-seqcna.annot
GITHUB quay.io/biocontainers/bioconductor-seqcna shpc-registry automated BioContainers addition for bioconductor-seqcna
GITHUB quay.io/biocontainers/bioconductor-seqcombo shpc-registry automated BioContainers addition for bioconductor-seqcombo gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-seqgate shpc-registry automated BioContainers addition for bioconductor-seqgate
GITHUB quay.io/biocontainers/bioconductor-seqgsea shpc-registry automated BioContainers addition for bioconductor-seqgsea
GITHUB quay.io/biocontainers/bioconductor-seqlogo shpc-registry automated BioContainers addition for bioconductor-seqlogo
GITHUB quay.io/biocontainers/bioconductor-seqpattern shpc-registry automated BioContainers addition for bioconductor-seqpattern tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-seqplots shpc-registry automated BioContainers addition for bioconductor-seqplots x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-seqsetvis shpc-registry automated BioContainers addition for bioconductor-seqsetvis 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-seqsqc shpc-registry automated BioContainers addition for bioconductor-seqsqc pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-seqtools shpc-registry automated BioContainers addition for bioconductor-seqtools
GITHUB quay.io/biocontainers/bioconductor-seqvartools shpc-registry automated BioContainers addition for bioconductor-seqvartools
GITHUB quay.io/biocontainers/bioconductor-serumstimulation shpc-registry automated BioContainers addition for bioconductor-serumstimulation
GITHUB quay.io/biocontainers/bioconductor-sesame shpc-registry automated BioContainers addition for bioconductor-sesame x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-sesamedata shpc-registry automated BioContainers addition for bioconductor-sesamedata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-setools shpc-registry automated BioContainers addition for bioconductor-setools
GITHUB quay.io/biocontainers/bioconductor-sevenbridges shpc-registry automated BioContainers addition for bioconductor-sevenbridges
GITHUB quay.io/biocontainers/bioconductor-sevenc shpc-registry automated BioContainers addition for bioconductor-sevenc 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-seventygenedata shpc-registry automated BioContainers addition for bioconductor-seventygenedata
GITHUB quay.io/biocontainers/bioconductor-sfedata singularity registry hpc automated addition for bioconductor-sfedata installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-sgcp singularity registry hpc automated addition for bioconductor-sgcp hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-sgseq shpc-registry automated BioContainers addition for bioconductor-sgseq
GITHUB quay.io/biocontainers/bioconductor-sharedobject shpc-registry automated BioContainers addition for bioconductor-sharedobject
GITHUB quay.io/biocontainers/bioconductor-shdz.db shpc-registry automated BioContainers addition for bioconductor-shdz.db
GITHUB quay.io/biocontainers/bioconductor-shinyepico shpc-registry automated BioContainers addition for bioconductor-shinyepico pandoc
GITHUB quay.io/biocontainers/bioconductor-shinymethyl shpc-registry automated BioContainers addition for bioconductor-shinymethyl
GITHUB quay.io/biocontainers/bioconductor-shinymethyldata shpc-registry automated BioContainers addition for bioconductor-shinymethyldata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-shinytandem shpc-registry automated BioContainers addition for bioconductor-shinytandem 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-shortread shpc-registry automated BioContainers addition for bioconductor-shortread
GITHUB quay.io/biocontainers/bioconductor-siamcat shpc-registry automated BioContainers addition for bioconductor-siamcat 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-sictools shpc-registry automated BioContainers addition for bioconductor-sictools
GITHUB quay.io/biocontainers/bioconductor-sift.hsapiens.dbsnp132 shpc-registry automated BioContainers addition for bioconductor-sift.hsapiens.dbsnp132
GITHUB quay.io/biocontainers/bioconductor-sift.hsapiens.dbsnp137 shpc-registry automated BioContainers addition for bioconductor-sift.hsapiens.dbsnp137
GITHUB quay.io/biocontainers/bioconductor-sigar shpc-registry automated BioContainers addition for bioconductor-sigar 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-sigcheck shpc-registry automated BioContainers addition for bioconductor-sigcheck
GITHUB quay.io/biocontainers/bioconductor-sigfeature shpc-registry automated BioContainers addition for bioconductor-sigfeature x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-sigfuge shpc-registry automated BioContainers addition for bioconductor-sigfuge
GITHUB quay.io/biocontainers/bioconductor-siggenes shpc-registry automated BioContainers addition for bioconductor-siggenes
GITHUB quay.io/biocontainers/bioconductor-sights shpc-registry automated BioContainers addition for bioconductor-sights gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-signaturesearch shpc-registry automated BioContainers addition for bioconductor-signaturesearch glpsol
GITHUB quay.io/biocontainers/bioconductor-signaturesearchdata shpc-registry automated BioContainers addition for bioconductor-signaturesearchdata glpsol
GITHUB quay.io/biocontainers/bioconductor-signer shpc-registry automated BioContainers addition for bioconductor-signer wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-signet shpc-registry automated BioContainers addition for bioconductor-signet 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-signifinder singularity registry hpc automated addition for bioconductor-signifinder installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-sigpathway shpc-registry automated BioContainers addition for bioconductor-sigpathway
GITHUB quay.io/biocontainers/bioconductor-sigspack shpc-registry automated BioContainers addition for bioconductor-sigspack
GITHUB quay.io/biocontainers/bioconductor-sigsquared shpc-registry automated BioContainers addition for bioconductor-sigsquared
GITHUB quay.io/biocontainers/bioconductor-silva128.1mgdb shpc-registry automated BioContainers addition for bioconductor-silva128.1mgdb x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-sim shpc-registry automated BioContainers addition for bioconductor-sim
GITHUB quay.io/biocontainers/bioconductor-simat shpc-registry automated BioContainers addition for bioconductor-simat zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-simbenchdata shpc-registry automated BioContainers addition for bioconductor-simbenchdata
GITHUB quay.io/biocontainers/bioconductor-simbindprofiles shpc-registry automated BioContainers addition for bioconductor-simbindprofiles
GITHUB quay.io/biocontainers/bioconductor-simbu singularity registry hpc automated addition for bioconductor-simbu installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-simd shpc-registry automated BioContainers addition for bioconductor-simd x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-simffpe shpc-registry automated BioContainers addition for bioconductor-simffpe
GITHUB quay.io/biocontainers/bioconductor-similarpeak shpc-registry automated BioContainers addition for bioconductor-similarpeak bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-simlr shpc-registry automated BioContainers addition for bioconductor-simlr 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv, c89
GITHUB quay.io/biocontainers/bioconductor-simona singularity registry hpc automated addition for bioconductor-simona pcre2posix_test, hb-info, glpsol, tjbench
GITHUB quay.io/biocontainers/bioconductor-simpintlists shpc-registry automated BioContainers addition for bioconductor-simpintlists
GITHUB quay.io/biocontainers/bioconductor-simpleaffy shpc-registry automated BioContainers addition for bioconductor-simpleaffy x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-simpleseg singularity registry hpc automated addition for bioconductor-simpleseg pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, dap-config, dap-config-pkgconfig, gdal-config, gdal_contour, gdal_grid, gdal_rasterize, gdal_translate, gdaladdo
GITHUB quay.io/biocontainers/bioconductor-simplifyenrichment shpc-registry automated BioContainers addition for bioconductor-simplifyenrichment
GITHUB quay.io/biocontainers/bioconductor-simulatorz shpc-registry automated BioContainers addition for bioconductor-simulatorz x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-sincell shpc-registry automated BioContainers addition for bioconductor-sincell glpsol
GITHUB quay.io/biocontainers/bioconductor-single.mtec.transcriptomes shpc-registry automated BioContainers addition for bioconductor-single.mtec.transcriptomes
GITHUB quay.io/biocontainers/bioconductor-singlecellexperiment-scripts shpc-registry automated BioContainers addition for bioconductor-singlecellexperiment-scripts bioconductor-singlecellexperiment-scripts-post-install-tests.sh, singlecellexperiment-create-single-cell-experiment.R, singlecellexperiment-get-random-cells.R, singlecellexperiment-get-random-genes.R, build_env_setup.sh, conda_build.sh, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-singlecellexperiment shpc-registry automated BioContainers addition for bioconductor-singlecellexperiment
GITHUB quay.io/biocontainers/bioconductor-singlecellmultimodal shpc-registry automated BioContainers addition for bioconductor-singlecellmultimodal x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify
GITHUB quay.io/biocontainers/bioconductor-singlecellsignalr shpc-registry automated BioContainers addition for bioconductor-singlecellsignalr
GITHUB quay.io/biocontainers/bioconductor-singlecelltk shpc-registry automated BioContainers addition for bioconductor-singlecelltk xgboost, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display
GITHUB quay.io/biocontainers/bioconductor-singlemoleculefootprinting shpc-registry automated BioContainers addition for bioconductor-singlemoleculefootprinting
GITHUB quay.io/biocontainers/bioconductor-singlemoleculefootprintingdata shpc-registry automated BioContainers addition for bioconductor-singlemoleculefootprintingdata
GITHUB quay.io/biocontainers/bioconductor-singler shpc-registry automated BioContainers addition for bioconductor-singler
GITHUB quay.io/biocontainers/bioconductor-singscore shpc-registry automated BioContainers addition for bioconductor-singscore 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-sipsic singularity registry hpc automated addition for bioconductor-sipsic hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-sispa shpc-registry automated BioContainers addition for bioconductor-sispa tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-sitadela shpc-registry automated BioContainers addition for bioconductor-sitadela
GITHUB quay.io/biocontainers/bioconductor-sitepath shpc-registry automated BioContainers addition for bioconductor-sitepath x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-sizepower shpc-registry automated BioContainers addition for bioconductor-sizepower
GITHUB quay.io/biocontainers/bioconductor-sketchr singularity registry hpc automated addition for bioconductor-sketchr x86_64-conda-linux-gnu.cfg, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-skewr shpc-registry automated BioContainers addition for bioconductor-skewr
GITHUB quay.io/biocontainers/bioconductor-slalom shpc-registry automated BioContainers addition for bioconductor-slalom gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-slgi shpc-registry automated BioContainers addition for bioconductor-slgi
GITHUB quay.io/biocontainers/bioconductor-slingshot shpc-registry automated BioContainers addition for bioconductor-slingshot
GITHUB quay.io/biocontainers/bioconductor-slinky shpc-registry automated BioContainers addition for bioconductor-slinky x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-slqpcr shpc-registry automated BioContainers addition for bioconductor-slqpcr
GITHUB quay.io/biocontainers/bioconductor-smad shpc-registry automated BioContainers addition for bioconductor-smad x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-smap shpc-registry automated BioContainers addition for bioconductor-smap
GITHUB quay.io/biocontainers/bioconductor-smite shpc-registry automated BioContainers addition for bioconductor-smite wget
GITHUB quay.io/biocontainers/bioconductor-smokingmouse singularity registry hpc automated addition for bioconductor-smokingmouse pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete
GITHUB quay.io/biocontainers/bioconductor-snadata shpc-registry automated BioContainers addition for bioconductor-snadata
GITHUB quay.io/biocontainers/bioconductor-snagee shpc-registry automated BioContainers addition for bioconductor-snagee
GITHUB quay.io/biocontainers/bioconductor-snageedata shpc-registry automated BioContainers addition for bioconductor-snageedata
GITHUB quay.io/biocontainers/bioconductor-snapcgh shpc-registry automated BioContainers addition for bioconductor-snapcgh
GITHUB quay.io/biocontainers/bioconductor-snapcount shpc-registry automated BioContainers addition for bioconductor-snapcount
GITHUB quay.io/biocontainers/bioconductor-snifter shpc-registry automated BioContainers addition for bioconductor-snifter
GITHUB quay.io/biocontainers/bioconductor-snm shpc-registry automated BioContainers addition for bioconductor-snm
GITHUB quay.io/biocontainers/bioconductor-snpchip shpc-registry automated BioContainers addition for bioconductor-snpchip gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-snpediar shpc-registry automated BioContainers addition for bioconductor-snpediar c89, c99
GITHUB quay.io/biocontainers/bioconductor-snphood shpc-registry automated BioContainers addition for bioconductor-snphood my_print_defaults, mysql_config, perror, wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-snphooddata shpc-registry automated BioContainers addition for bioconductor-snphooddata
GITHUB quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp.20101109 shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp.20101109
GITHUB quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp.20120608 shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp.20120608
GITHUB quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp141.grch38 shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp141.grch38
GITHUB quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp142.grch37 shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp142.grch37
GITHUB quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp144.grch37 shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp144.grch37
GITHUB quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp144.grch38 shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp144.grch38 x86_64-conda-linux-gnu-gfortran.bin, c89, c99
GITHUB quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp149.grch38 shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp149.grch38
GITHUB quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp150.grch38 shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp150.grch38
GITHUB quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp151.grch38 shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp151.grch38 x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-snprelate shpc-registry automated BioContainers addition for bioconductor-snprelate
GITHUB quay.io/biocontainers/bioconductor-snpstats shpc-registry automated BioContainers addition for bioconductor-snpstats
GITHUB quay.io/biocontainers/bioconductor-soggi shpc-registry automated BioContainers addition for bioconductor-soggi tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-sojourner shpc-registry automated BioContainers addition for bioconductor-sojourner pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach, applygeo
GITHUB quay.io/biocontainers/bioconductor-somascan.db singularity registry hpc automated addition for bioconductor-somascan.db pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete
GITHUB quay.io/biocontainers/bioconductor-somaticadata shpc-registry automated BioContainers addition for bioconductor-somaticadata
GITHUB quay.io/biocontainers/bioconductor-somaticcanceralterations shpc-registry automated BioContainers addition for bioconductor-somaticcanceralterations
GITHUB quay.io/biocontainers/bioconductor-somaticsignatures shpc-registry automated BioContainers addition for bioconductor-somaticsignatures
GITHUB quay.io/biocontainers/bioconductor-somnibus shpc-registry automated BioContainers addition for bioconductor-somnibus
GITHUB quay.io/biocontainers/bioconductor-soybeancdf shpc-registry automated BioContainers addition for bioconductor-soybeancdf
GITHUB quay.io/biocontainers/bioconductor-soybeanprobe shpc-registry automated BioContainers addition for bioconductor-soybeanprobe
GITHUB quay.io/biocontainers/bioconductor-spacepac shpc-registry automated BioContainers addition for bioconductor-spacepac
GITHUB quay.io/biocontainers/bioconductor-spaniel shpc-registry automated BioContainers addition for bioconductor-spaniel
GITHUB quay.io/biocontainers/bioconductor-sparrow shpc-registry automated BioContainers addition for bioconductor-sparrow
GITHUB quay.io/biocontainers/bioconductor-sparsearray singularity registry hpc automated addition for bioconductor-sparsearray hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-sparsedossa shpc-registry automated BioContainers addition for bioconductor-sparsedossa gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-sparsematrixstats shpc-registry automated BioContainers addition for bioconductor-sparsematrixstats
GITHUB quay.io/biocontainers/bioconductor-sparsenetgls shpc-registry automated BioContainers addition for bioconductor-sparsenetgls x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-sparsesignatures shpc-registry automated BioContainers addition for bioconductor-sparsesignatures
GITHUB quay.io/biocontainers/bioconductor-spasim singularity registry hpc automated addition for bioconductor-spasim x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500
GITHUB quay.io/biocontainers/bioconductor-spatialcpie shpc-registry automated BioContainers addition for bioconductor-spatialcpie x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-spatialdatasets singularity registry hpc automated addition for bioconductor-spatialdatasets pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, display, identify, import, magick, magick-script, mogrify, montage, convert, pkg-config, pkg-config.bin, stream, compare
GITHUB quay.io/biocontainers/bioconductor-spatialde shpc-registry automated BioContainers addition for bioconductor-spatialde x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify
GITHUB quay.io/biocontainers/bioconductor-spatialdecon shpc-registry automated BioContainers addition for bioconductor-spatialdecon
GITHUB quay.io/biocontainers/bioconductor-spatialdmelxsim shpc-registry automated BioContainers addition for bioconductor-spatialdmelxsim
GITHUB quay.io/biocontainers/bioconductor-spatialexperiment shpc-registry automated BioContainers addition for bioconductor-spatialexperiment x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify
GITHUB quay.io/biocontainers/bioconductor-spatialfeatureexperiment singularity registry hpc automated addition for bioconductor-spatialfeatureexperiment pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, udunits2, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, dap-config, dap-config-pkgconfig, gdal-config, gdal_contour, gdal_grid, gdal_rasterize, gdal_translate
GITHUB quay.io/biocontainers/bioconductor-spatialheatmap shpc-registry automated BioContainers addition for bioconductor-spatialheatmap aomdec, aomenc, ffmpeg, ffprobe, h264dec, h264enc, lame, vpxdec, vpxenc, x264, x265, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv, psktool
GITHUB quay.io/biocontainers/bioconductor-spatiallibd shpc-registry automated BioContainers addition for bioconductor-spatiallibd x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify
GITHUB quay.io/biocontainers/bioconductor-spatialomicsoverlay singularity registry hpc automated addition for bioconductor-spatialomicsoverlay jwebserver, geosop, x86_64-conda-linux-gnu-pkg-config, geos-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, jpackage, hb-info, f2py3.11, dvipdf
GITHUB quay.io/biocontainers/bioconductor-spatzie shpc-registry automated BioContainers addition for bioconductor-spatzie
GITHUB quay.io/biocontainers/bioconductor-speckle singularity registry hpc automated addition for bioconductor-speckle geosop, geos-config, hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1
GITHUB quay.io/biocontainers/bioconductor-specl shpc-registry automated BioContainers addition for bioconductor-specl
GITHUB quay.io/biocontainers/bioconductor-specond shpc-registry automated BioContainers addition for bioconductor-specond
GITHUB quay.io/biocontainers/bioconductor-spectra shpc-registry automated BioContainers addition for bioconductor-spectra
GITHUB quay.io/biocontainers/bioconductor-spectraltad shpc-registry automated BioContainers addition for bioconductor-spectraltad x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-spectraql singularity registry hpc automated addition for bioconductor-spectraql x86_64-conda-linux-gnu.cfg, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-spem shpc-registry automated BioContainers addition for bioconductor-spem
GITHUB quay.io/biocontainers/bioconductor-spia shpc-registry automated BioContainers addition for bioconductor-spia
GITHUB quay.io/biocontainers/bioconductor-spiat singularity registry hpc automated addition for bioconductor-spiat pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, dap-config, dap-config-pkgconfig, gdal-config, gdal_contour, gdal_grid, gdal_rasterize, gdal_translate, gdaladdo
GITHUB quay.io/biocontainers/bioconductor-spicyr shpc-registry automated BioContainers addition for bioconductor-spicyr testepsg, gdal_create, pdfsig, pg_standby, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach
GITHUB quay.io/biocontainers/bioconductor-spidermir shpc-registry automated BioContainers addition for bioconductor-spidermir wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-spikein shpc-registry automated BioContainers addition for bioconductor-spikein
GITHUB quay.io/biocontainers/bioconductor-spikeinsubset shpc-registry automated BioContainers addition for bioconductor-spikeinsubset
GITHUB quay.io/biocontainers/bioconductor-spikeli shpc-registry automated BioContainers addition for bioconductor-spikeli
GITHUB quay.io/biocontainers/bioconductor-spiky shpc-registry automated BioContainers addition for bioconductor-spiky
GITHUB quay.io/biocontainers/bioconductor-spillr singularity registry hpc automated addition for bioconductor-spillr x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, numpy-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-spktools shpc-registry automated BioContainers addition for bioconductor-spktools
GITHUB quay.io/biocontainers/bioconductor-splatter shpc-registry automated BioContainers addition for bioconductor-splatter gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-splicegear shpc-registry automated BioContainers addition for bioconductor-splicegear gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-splicer shpc-registry automated BioContainers addition for bioconductor-splicer wget
GITHUB quay.io/biocontainers/bioconductor-splicesites shpc-registry automated BioContainers addition for bioconductor-splicesites gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-splicewiz singularity registry hpc automated addition for bioconductor-splicewiz installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-splicingfactory shpc-registry automated BioContainers addition for bioconductor-splicingfactory
GITHUB quay.io/biocontainers/bioconductor-splicinggraphs shpc-registry automated BioContainers addition for bioconductor-splicinggraphs
GITHUB quay.io/biocontainers/bioconductor-splinetimer shpc-registry automated BioContainers addition for bioconductor-splinetimer wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-splinter shpc-registry automated BioContainers addition for bioconductor-splinter wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-splots shpc-registry automated BioContainers addition for bioconductor-splots
GITHUB quay.io/biocontainers/bioconductor-sponge shpc-registry automated BioContainers addition for bioconductor-sponge gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-spotclean singularity registry hpc automated addition for bioconductor-spotclean geosop, geos-config, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj
GITHUB quay.io/biocontainers/bioconductor-spotlight singularity registry hpc automated addition for bioconductor-spotlight installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-spotsegmentation shpc-registry automated BioContainers addition for bioconductor-spotsegmentation 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-spqn shpc-registry automated BioContainers addition for bioconductor-spqn
GITHUB quay.io/biocontainers/bioconductor-spqndata shpc-registry automated BioContainers addition for bioconductor-spqndata
GITHUB quay.io/biocontainers/bioconductor-spsimseq shpc-registry automated BioContainers addition for bioconductor-spsimseq
GITHUB quay.io/biocontainers/bioconductor-sqldataframe shpc-registry automated BioContainers addition for bioconductor-sqldataframe
GITHUB quay.io/biocontainers/bioconductor-squadd shpc-registry automated BioContainers addition for bioconductor-squadd
GITHUB quay.io/biocontainers/bioconductor-sracipe shpc-registry automated BioContainers addition for bioconductor-sracipe f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-sradb shpc-registry automated BioContainers addition for bioconductor-sradb
GITHUB quay.io/biocontainers/bioconductor-srap shpc-registry automated BioContainers addition for bioconductor-srap 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-srgnet shpc-registry automated BioContainers addition for bioconductor-srgnet c89, c99
GITHUB quay.io/biocontainers/bioconductor-srnadiff shpc-registry automated BioContainers addition for bioconductor-srnadiff pandoc-citeproc, pandoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-sscore shpc-registry automated BioContainers addition for bioconductor-sscore
GITHUB quay.io/biocontainers/bioconductor-sscu shpc-registry automated BioContainers addition for bioconductor-sscu tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-sseq shpc-registry automated BioContainers addition for bioconductor-sseq
GITHUB quay.io/biocontainers/bioconductor-ssize shpc-registry automated BioContainers addition for bioconductor-ssize
GITHUB quay.io/biocontainers/bioconductor-ssnappy singularity registry hpc automated addition for bioconductor-ssnappy installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-sspa shpc-registry automated BioContainers addition for bioconductor-sspa x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-sspaths shpc-registry automated BioContainers addition for bioconductor-sspaths
GITHUB quay.io/biocontainers/bioconductor-ssrch shpc-registry automated BioContainers addition for bioconductor-ssrch x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-ssviz shpc-registry automated BioContainers addition for bioconductor-ssviz
GITHUB quay.io/biocontainers/bioconductor-stabmap singularity registry hpc automated addition for bioconductor-stabmap x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-stager shpc-registry automated BioContainers addition for bioconductor-stager gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-stan shpc-registry automated BioContainers addition for bioconductor-stan wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-standr singularity registry hpc automated addition for bioconductor-standr x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500
GITHUB quay.io/biocontainers/bioconductor-starank shpc-registry automated BioContainers addition for bioconductor-starank
GITHUB quay.io/biocontainers/bioconductor-starbiotrek shpc-registry automated BioContainers addition for bioconductor-starbiotrek idn2, wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-starr shpc-registry automated BioContainers addition for bioconductor-starr 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-stategra shpc-registry automated BioContainers addition for bioconductor-stategra
GITHUB quay.io/biocontainers/bioconductor-statial singularity registry hpc automated addition for bioconductor-statial pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, udunits2, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, dap-config, dap-config-pkgconfig, gdal-config, gdal_contour, gdal_grid, gdal_rasterize, gdal_translate
GITHUB quay.io/biocontainers/bioconductor-stattarget shpc-registry automated BioContainers addition for bioconductor-stattarget
GITHUB quay.io/biocontainers/bioconductor-stdeconvolve singularity registry hpc automated addition for bioconductor-stdeconvolve jpackage, cups-config, ippeveprinter, ipptool, numba, pycc, tqdm, f2py3.10, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug
GITHUB quay.io/biocontainers/bioconductor-stemhypoxia shpc-registry automated BioContainers addition for bioconductor-stemhypoxia
GITHUB quay.io/biocontainers/bioconductor-stepnorm shpc-registry automated BioContainers addition for bioconductor-stepnorm
GITHUB quay.io/biocontainers/bioconductor-stexampledata shpc-registry automated BioContainers addition for bioconductor-stexampledata x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify
GITHUB quay.io/biocontainers/bioconductor-stjoincount singularity registry hpc automated addition for bioconductor-stjoincount pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, udunits2, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, dap-config, dap-config-pkgconfig, gdal-config, gdal_contour, gdal_grid, gdal_rasterize, gdal_translate
GITHUB quay.io/biocontainers/bioconductor-stjudem shpc-registry automated BioContainers addition for bioconductor-stjudem
GITHUB quay.io/biocontainers/bioconductor-strandcheckr shpc-registry automated BioContainers addition for bioconductor-strandcheckr x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-streamer shpc-registry automated BioContainers addition for bioconductor-streamer
GITHUB quay.io/biocontainers/bioconductor-stringdb shpc-registry automated BioContainers addition for bioconductor-stringdb
GITHUB quay.io/biocontainers/bioconductor-stroma4 shpc-registry automated BioContainers addition for bioconductor-stroma4 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-struct shpc-registry automated BioContainers addition for bioconductor-struct
GITHUB quay.io/biocontainers/bioconductor-structstrings shpc-registry automated BioContainers addition for bioconductor-structstrings x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-structtoolbox shpc-registry automated BioContainers addition for bioconductor-structtoolbox pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach, applygeo
GITHUB quay.io/biocontainers/bioconductor-structuralvariantannotation shpc-registry automated BioContainers addition for bioconductor-structuralvariantannotation x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-subcellbarcode shpc-registry automated BioContainers addition for bioconductor-subcellbarcode x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-subseq shpc-registry automated BioContainers addition for bioconductor-subseq tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-sugarcanecdf shpc-registry automated BioContainers addition for bioconductor-sugarcanecdf
GITHUB quay.io/biocontainers/bioconductor-sugarcaneprobe shpc-registry automated BioContainers addition for bioconductor-sugarcaneprobe
GITHUB quay.io/biocontainers/bioconductor-suitor singularity registry hpc automated addition for bioconductor-suitor
GITHUB quay.io/biocontainers/bioconductor-summarizedbenchmark shpc-registry automated BioContainers addition for bioconductor-summarizedbenchmark x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-summarizedexperiment shpc-registry automated BioContainers addition for bioconductor-summarizedexperiment wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-summix shpc-registry automated BioContainers addition for bioconductor-summix
GITHUB quay.io/biocontainers/bioconductor-supersigs shpc-registry automated BioContainers addition for bioconductor-supersigs
GITHUB quay.io/biocontainers/bioconductor-suprahex shpc-registry automated BioContainers addition for bioconductor-suprahex
GITHUB quay.io/biocontainers/bioconductor-surfaltr shpc-registry automated BioContainers addition for bioconductor-surfaltr
GITHUB quay.io/biocontainers/bioconductor-survcomp shpc-registry automated BioContainers addition for bioconductor-survcomp
GITHUB quay.io/biocontainers/bioconductor-survtype shpc-registry automated BioContainers addition for bioconductor-survtype x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-sushi shpc-registry automated BioContainers addition for bioconductor-sushi
GITHUB quay.io/biocontainers/bioconductor-sva shpc-registry automated BioContainers addition for bioconductor-sva
GITHUB quay.io/biocontainers/bioconductor-svanumt shpc-registry automated BioContainers addition for bioconductor-svanumt
GITHUB quay.io/biocontainers/bioconductor-svaplsseq shpc-registry automated BioContainers addition for bioconductor-svaplsseq idn2, wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-svaretro shpc-registry automated BioContainers addition for bioconductor-svaretro
GITHUB quay.io/biocontainers/bioconductor-svm2crm shpc-registry automated BioContainers addition for bioconductor-svm2crm gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-svm2crmdata shpc-registry automated BioContainers addition for bioconductor-svm2crmdata
GITHUB quay.io/biocontainers/bioconductor-svmdo singularity registry hpc automated addition for bioconductor-svmdo git2, hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-swath2stats shpc-registry automated BioContainers addition for bioconductor-swath2stats tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-swathxtend shpc-registry automated BioContainers addition for bioconductor-swathxtend gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-swfdr shpc-registry automated BioContainers addition for bioconductor-swfdr c89, c99
GITHUB quay.io/biocontainers/bioconductor-swimr shpc-registry automated BioContainers addition for bioconductor-swimr x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-switchbox shpc-registry automated BioContainers addition for bioconductor-switchbox
GITHUB quay.io/biocontainers/bioconductor-switchde shpc-registry automated BioContainers addition for bioconductor-switchde wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-synapsis shpc-registry automated BioContainers addition for bioconductor-synapsis fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/bioconductor-synapter shpc-registry automated BioContainers addition for bioconductor-synapter pandoc-citeproc, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24
GITHUB quay.io/biocontainers/bioconductor-synapterdata shpc-registry automated BioContainers addition for bioconductor-synapterdata gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp
GITHUB quay.io/biocontainers/bioconductor-synaptome.data shpc-registry automated BioContainers addition for bioconductor-synaptome.data
GITHUB quay.io/biocontainers/bioconductor-synaptome.db shpc-registry automated BioContainers addition for bioconductor-synaptome.db glpsol
GITHUB quay.io/biocontainers/bioconductor-synergyfinder shpc-registry automated BioContainers addition for bioconductor-synergyfinder pandoc
GITHUB quay.io/biocontainers/bioconductor-synextend shpc-registry automated BioContainers addition for bioconductor-synextend
GITHUB quay.io/biocontainers/bioconductor-synlet shpc-registry automated BioContainers addition for bioconductor-synlet ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-synmut shpc-registry automated BioContainers addition for bioconductor-synmut x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-syntenet singularity registry hpc automated addition for bioconductor-syntenet installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-systempiper shpc-registry automated BioContainers addition for bioconductor-systempiper
GITHUB quay.io/biocontainers/bioconductor-systempiperdata shpc-registry automated BioContainers addition for bioconductor-systempiperdata
GITHUB quay.io/biocontainers/bioconductor-systempipeshiny shpc-registry automated BioContainers addition for bioconductor-systempipeshiny pandoc
GITHUB quay.io/biocontainers/bioconductor-systempipetools shpc-registry automated BioContainers addition for bioconductor-systempipetools
GITHUB quay.io/biocontainers/bioconductor-tabulamurisdata shpc-registry automated BioContainers addition for bioconductor-tabulamurisdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-tabulamurissenisdata shpc-registry automated BioContainers addition for bioconductor-tabulamurissenisdata
GITHUB quay.io/biocontainers/bioconductor-tadar singularity registry hpc automated addition for bioconductor-tadar pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-tadcompare shpc-registry automated BioContainers addition for bioconductor-tadcompare
GITHUB quay.io/biocontainers/bioconductor-tanggle shpc-registry automated BioContainers addition for bioconductor-tanggle
GITHUB quay.io/biocontainers/bioconductor-tapseq shpc-registry automated BioContainers addition for bioconductor-tapseq
GITHUB quay.io/biocontainers/bioconductor-target shpc-registry automated BioContainers addition for bioconductor-target
GITHUB quay.io/biocontainers/bioconductor-targetdecoy shpc-registry automated BioContainers addition for bioconductor-targetdecoy zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-targetscan.hs.eg.db shpc-registry automated BioContainers addition for bioconductor-targetscan.hs.eg.db
GITHUB quay.io/biocontainers/bioconductor-targetscan.mm.eg.db shpc-registry automated BioContainers addition for bioconductor-targetscan.mm.eg.db
GITHUB quay.io/biocontainers/bioconductor-targetscore shpc-registry automated BioContainers addition for bioconductor-targetscore
GITHUB quay.io/biocontainers/bioconductor-targetscoredata shpc-registry automated BioContainers addition for bioconductor-targetscoredata
GITHUB quay.io/biocontainers/bioconductor-targetsearch shpc-registry automated BioContainers addition for bioconductor-targetsearch zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/bioconductor-targetsearchdata shpc-registry automated BioContainers addition for bioconductor-targetsearchdata
GITHUB quay.io/biocontainers/bioconductor-tarseqqc shpc-registry automated BioContainers addition for bioconductor-tarseqqc wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-tartare shpc-registry automated BioContainers addition for bioconductor-tartare
GITHUB quay.io/biocontainers/bioconductor-tbsignatureprofiler shpc-registry automated BioContainers addition for bioconductor-tbsignatureprofiler
GITHUB quay.io/biocontainers/bioconductor-tbx20bamsubset shpc-registry automated BioContainers addition for bioconductor-tbx20bamsubset
GITHUB quay.io/biocontainers/bioconductor-tcc shpc-registry automated BioContainers addition for bioconductor-tcc
GITHUB quay.io/biocontainers/bioconductor-tcgabiolinks shpc-registry automated BioContainers addition for bioconductor-tcgabiolinks wget
GITHUB quay.io/biocontainers/bioconductor-tcgabiolinksgui.data shpc-registry automated BioContainers addition for bioconductor-tcgabiolinksgui.data x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-tcgabiolinksgui shpc-registry automated BioContainers addition for bioconductor-tcgabiolinksgui
GITHUB quay.io/biocontainers/bioconductor-tcgacrcmirna shpc-registry automated BioContainers addition for bioconductor-tcgacrcmirna x86_64-conda-linux-gnu-gfortran.bin, c89, c99
GITHUB quay.io/biocontainers/bioconductor-tcgacrcmrna shpc-registry automated BioContainers addition for bioconductor-tcgacrcmrna x86_64-conda-linux-gnu-gfortran.bin, c89, c99
GITHUB quay.io/biocontainers/bioconductor-tcgamethylation450k shpc-registry automated BioContainers addition for bioconductor-tcgamethylation450k
GITHUB quay.io/biocontainers/bioconductor-tcgautils shpc-registry automated BioContainers addition for bioconductor-tcgautils 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-tcgawgbsdata.hg19 shpc-registry automated BioContainers addition for bioconductor-tcgawgbsdata.hg19 x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-tcgaworkflowdata shpc-registry automated BioContainers addition for bioconductor-tcgaworkflowdata gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-tcseq shpc-registry automated BioContainers addition for bioconductor-tcseq gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-tdaracne shpc-registry automated BioContainers addition for bioconductor-tdaracne
GITHUB quay.io/biocontainers/bioconductor-tdbasedufe singularity registry hpc automated addition for bioconductor-tdbasedufe hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconductor-tdbasedufeadv singularity registry hpc automated addition for bioconductor-tdbasedufeadv hb-info, f2py3.11, tjbench, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1
GITHUB quay.io/biocontainers/bioconductor-tekrabber singularity registry hpc automated addition for bioconductor-tekrabber installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-tenxbraindata shpc-registry automated BioContainers addition for bioconductor-tenxbraindata 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-tenxbusdata shpc-registry automated BioContainers addition for bioconductor-tenxbusdata
GITHUB quay.io/biocontainers/bioconductor-tenxio singularity registry hpc automated addition for bioconductor-tenxio installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-tenxpbmcdata shpc-registry automated BioContainers addition for bioconductor-tenxpbmcdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-tenxplore shpc-registry automated BioContainers addition for bioconductor-tenxplore gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-tenxvisiumdata shpc-registry automated BioContainers addition for bioconductor-tenxvisiumdata x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify
GITHUB quay.io/biocontainers/bioconductor-teqc shpc-registry automated BioContainers addition for bioconductor-teqc gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ternarynet shpc-registry automated BioContainers addition for bioconductor-ternarynet glpsol
GITHUB quay.io/biocontainers/bioconductor-terratcgadata singularity registry hpc automated addition for bioconductor-terratcgadata installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-test1cdf shpc-registry automated BioContainers addition for bioconductor-test1cdf
GITHUB quay.io/biocontainers/bioconductor-test2cdf shpc-registry automated BioContainers addition for bioconductor-test2cdf
GITHUB quay.io/biocontainers/bioconductor-test3cdf shpc-registry automated BioContainers addition for bioconductor-test3cdf
GITHUB quay.io/biocontainers/bioconductor-test3probe shpc-registry automated BioContainers addition for bioconductor-test3probe
GITHUB quay.io/biocontainers/bioconductor-tfarm shpc-registry automated BioContainers addition for bioconductor-tfarm gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-tfbstools shpc-registry automated BioContainers addition for bioconductor-tfbstools
GITHUB quay.io/biocontainers/bioconductor-tfea.chip shpc-registry automated BioContainers addition for bioconductor-tfea.chip 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-tfhaz shpc-registry automated BioContainers addition for bioconductor-tfhaz gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-tfutils shpc-registry automated BioContainers addition for bioconductor-tfutils 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-tidybulk shpc-registry automated BioContainers addition for bioconductor-tidybulk
GITHUB quay.io/biocontainers/bioconductor-tidycoverage singularity registry hpc automated addition for bioconductor-tidycoverage x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-tidyomics singularity registry hpc automated addition for bioconductor-tidyomics pandoc-lua, x86_64-conda-linux-gnu.cfg, pandoc-server, idle3.13, pydoc3.13, python3.13, python3.13-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-tidysbml singularity registry hpc automated addition for bioconductor-tidysbml x86_64-conda-linux-gnu.cfg, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-tidysinglecellexperiment shpc-registry automated BioContainers addition for bioconductor-tidysinglecellexperiment
GITHUB quay.io/biocontainers/bioconductor-tidyspatialexperiment singularity registry hpc automated addition for bioconductor-tidyspatialexperiment dec265, x265, rav1e, SvtAv1EncApp, dav1d, aomdec, aomenc, pandoc-lua, x86_64-conda-linux-gnu.cfg, pandoc-server, idle3.13, pydoc3.13, python3.13, python3.13-config, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, display, identify, import, magick, magick-script
GITHUB quay.io/biocontainers/bioconductor-tidysummarizedexperiment shpc-registry automated BioContainers addition for bioconductor-tidysummarizedexperiment
GITHUB quay.io/biocontainers/bioconductor-tidytof singularity registry hpc automated addition for bioconductor-tidytof x86_64-conda-linux-gnu.cfg, glpsol, hb-info, tjbench
GITHUB quay.io/biocontainers/bioconductor-tigre shpc-registry automated BioContainers addition for bioconductor-tigre
GITHUB quay.io/biocontainers/bioconductor-tiledbarray shpc-registry automated BioContainers addition for bioconductor-tiledbarray
GITHUB quay.io/biocontainers/bioconductor-tilingarray shpc-registry automated BioContainers addition for bioconductor-tilingarray
GITHUB quay.io/biocontainers/bioconductor-timecourse shpc-registry automated BioContainers addition for bioconductor-timecourse
GITHUB quay.io/biocontainers/bioconductor-timecoursedata shpc-registry automated BioContainers addition for bioconductor-timecoursedata
GITHUB quay.io/biocontainers/bioconductor-timeomics shpc-registry automated BioContainers addition for bioconductor-timeomics
GITHUB quay.io/biocontainers/bioconductor-timerquant shpc-registry automated BioContainers addition for bioconductor-timerquant
GITHUB quay.io/biocontainers/bioconductor-timescape shpc-registry automated BioContainers addition for bioconductor-timescape gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-timeseriesexperiment shpc-registry automated BioContainers addition for bioconductor-timeseriesexperiment x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-timirgen shpc-registry automated BioContainers addition for bioconductor-timirgen Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage
GITHUB quay.io/biocontainers/bioconductor-tin shpc-registry automated BioContainers addition for bioconductor-tin
GITHUB quay.io/biocontainers/bioconductor-tinesath1cdf shpc-registry automated BioContainers addition for bioconductor-tinesath1cdf
GITHUB quay.io/biocontainers/bioconductor-tinesath1probe shpc-registry automated BioContainers addition for bioconductor-tinesath1probe
GITHUB quay.io/biocontainers/bioconductor-tissueenrich shpc-registry automated BioContainers addition for bioconductor-tissueenrich 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-tissuetreg shpc-registry automated BioContainers addition for bioconductor-tissuetreg x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-titancna shpc-registry automated BioContainers addition for bioconductor-titancna
GITHUB quay.io/biocontainers/bioconductor-tkwidgets shpc-registry automated BioContainers addition for bioconductor-tkwidgets
GITHUB quay.io/biocontainers/bioconductor-tloh shpc-registry automated BioContainers addition for bioconductor-tloh
GITHUB quay.io/biocontainers/bioconductor-tmexplorer shpc-registry automated BioContainers addition for bioconductor-tmexplorer
GITHUB quay.io/biocontainers/bioconductor-tmixclust shpc-registry automated BioContainers addition for bioconductor-tmixclust gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-tnbc.cms shpc-registry automated BioContainers addition for bioconductor-tnbc.cms x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-tnt shpc-registry automated BioContainers addition for bioconductor-tnt gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-toast shpc-registry automated BioContainers addition for bioconductor-toast
GITHUB quay.io/biocontainers/bioconductor-tofsims shpc-registry automated BioContainers addition for bioconductor-tofsims
GITHUB quay.io/biocontainers/bioconductor-tofsimsdata shpc-registry automated BioContainers addition for bioconductor-tofsimsdata
GITHUB quay.io/biocontainers/bioconductor-tomatocdf shpc-registry automated BioContainers addition for bioconductor-tomatocdf
GITHUB quay.io/biocontainers/bioconductor-tomatoprobe shpc-registry automated BioContainers addition for bioconductor-tomatoprobe
GITHUB quay.io/biocontainers/bioconductor-tomoda shpc-registry automated BioContainers addition for bioconductor-tomoda
GITHUB quay.io/biocontainers/bioconductor-tomoseqr singularity registry hpc automated addition for bioconductor-tomoseqr SvtAv1DecApp, SvtAv1EncApp, aomdec, aomenc, asn1Coding, asn1Decoding, asn1Parser, ffmpeg, ffprobe, h264dec, h264enc, lame, p11-kit, p11tool, trust, vpxdec, vpxenc, x264, x265, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv, psktool, sexp-conv, srptool, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script
GITHUB quay.io/biocontainers/bioconductor-topaseq shpc-registry automated BioContainers addition for bioconductor-topaseq x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-topconfects shpc-registry automated BioContainers addition for bioconductor-topconfects x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-topdownr shpc-registry automated BioContainers addition for bioconductor-topdownr gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp
GITHUB quay.io/biocontainers/bioconductor-topdownrdata shpc-registry automated BioContainers addition for bioconductor-topdownrdata gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp
GITHUB quay.io/biocontainers/bioconductor-topgo shpc-registry automated BioContainers addition for bioconductor-topgo
GITHUB quay.io/biocontainers/bioconductor-toxicogx shpc-registry automated BioContainers addition for bioconductor-toxicogx
GITHUB quay.io/biocontainers/bioconductor-tpp shpc-registry automated BioContainers addition for bioconductor-tpp
GITHUB quay.io/biocontainers/bioconductor-tpp2d shpc-registry automated BioContainers addition for bioconductor-tpp2d x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-tracktables shpc-registry automated BioContainers addition for bioconductor-tracktables
GITHUB quay.io/biocontainers/bioconductor-trackviewer shpc-registry automated BioContainers addition for bioconductor-trackviewer
GITHUB quay.io/biocontainers/bioconductor-tradeseq shpc-registry automated BioContainers addition for bioconductor-tradeseq
GITHUB quay.io/biocontainers/bioconductor-trajectorygeometry shpc-registry automated BioContainers addition for bioconductor-trajectorygeometry
GITHUB quay.io/biocontainers/bioconductor-trajectoryutils shpc-registry automated BioContainers addition for bioconductor-trajectoryutils
GITHUB quay.io/biocontainers/bioconductor-transcriptogramer shpc-registry automated BioContainers addition for bioconductor-transcriptogramer giffilter, gifsponge, gifecho, gifinto, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink
GITHUB quay.io/biocontainers/bioconductor-transcriptr shpc-registry automated BioContainers addition for bioconductor-transcriptr wget, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-transformgampoi shpc-registry automated BioContainers addition for bioconductor-transformgampoi
GITHUB quay.io/biocontainers/bioconductor-transite shpc-registry automated BioContainers addition for bioconductor-transite x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-translatome shpc-registry automated BioContainers addition for bioconductor-translatome
GITHUB quay.io/biocontainers/bioconductor-transomics2cytoscape shpc-registry automated BioContainers addition for bioconductor-transomics2cytoscape Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage
GITHUB quay.io/biocontainers/bioconductor-transview shpc-registry automated BioContainers addition for bioconductor-transview
GITHUB quay.io/biocontainers/bioconductor-trare shpc-registry automated BioContainers addition for bioconductor-trare
GITHUB quay.io/biocontainers/bioconductor-traser shpc-registry automated BioContainers addition for bioconductor-traser wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-traviz shpc-registry automated BioContainers addition for bioconductor-traviz
GITHUB quay.io/biocontainers/bioconductor-treeandleaf shpc-registry automated BioContainers addition for bioconductor-treeandleaf
GITHUB quay.io/biocontainers/bioconductor-treeclimbr singularity registry hpc automated addition for bioconductor-treeclimbr x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, numpy-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench
GITHUB quay.io/biocontainers/bioconductor-treeio shpc-registry automated BioContainers addition for bioconductor-treeio gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-treekor shpc-registry automated BioContainers addition for bioconductor-treekor
GITHUB quay.io/biocontainers/bioconductor-treesummarizedexperiment shpc-registry automated BioContainers addition for bioconductor-treesummarizedexperiment
GITHUB quay.io/biocontainers/bioconductor-treg singularity registry hpc automated addition for bioconductor-treg installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-trena shpc-registry automated BioContainers addition for bioconductor-trena xgboost, my_print_defaults, mysql_config, perror, pg_config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-trendy shpc-registry automated BioContainers addition for bioconductor-trendy gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-tress shpc-registry automated BioContainers addition for bioconductor-tress
GITHUB quay.io/biocontainers/bioconductor-tricycle shpc-registry automated BioContainers addition for bioconductor-tricycle
GITHUB quay.io/biocontainers/bioconductor-triform shpc-registry automated BioContainers addition for bioconductor-triform 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-trigger shpc-registry automated BioContainers addition for bioconductor-trigger
GITHUB quay.io/biocontainers/bioconductor-trio shpc-registry automated BioContainers addition for bioconductor-trio
GITHUB quay.io/biocontainers/bioconductor-triplex shpc-registry automated BioContainers addition for bioconductor-triplex
GITHUB quay.io/biocontainers/bioconductor-tripr shpc-registry automated BioContainers addition for bioconductor-tripr
GITHUB quay.io/biocontainers/bioconductor-trna shpc-registry automated BioContainers addition for bioconductor-trna x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-trnadbimport shpc-registry automated BioContainers addition for bioconductor-trnadbimport x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-trnascanimport shpc-registry automated BioContainers addition for bioconductor-trnascanimport 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-tronco shpc-registry automated BioContainers addition for bioconductor-tronco
GITHUB quay.io/biocontainers/bioconductor-tsar singularity registry hpc automated addition for bioconductor-tsar protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin
GITHUB quay.io/biocontainers/bioconductor-tscan shpc-registry automated BioContainers addition for bioconductor-tscan
GITHUB quay.io/biocontainers/bioconductor-tscr shpc-registry automated BioContainers addition for bioconductor-tscr pandoc-server, pandoc
GITHUB quay.io/biocontainers/bioconductor-tspair shpc-registry automated BioContainers addition for bioconductor-tspair
GITHUB quay.io/biocontainers/bioconductor-tsrchitect shpc-registry automated BioContainers addition for bioconductor-tsrchitect wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-tssi shpc-registry automated BioContainers addition for bioconductor-tssi gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ttgsea shpc-registry automated BioContainers addition for bioconductor-ttgsea
GITHUB quay.io/biocontainers/bioconductor-ttmap shpc-registry automated BioContainers addition for bioconductor-ttmap
GITHUB quay.io/biocontainers/bioconductor-tuberculosis shpc-registry automated BioContainers addition for bioconductor-tuberculosis
GITHUB quay.io/biocontainers/bioconductor-tumourmethdata singularity registry hpc automated addition for bioconductor-tumourmethdata pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc
GITHUB quay.io/biocontainers/bioconductor-turbonorm shpc-registry automated BioContainers addition for bioconductor-turbonorm
GITHUB quay.io/biocontainers/bioconductor-tvtb shpc-registry automated BioContainers addition for bioconductor-tvtb wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-tweedeseq shpc-registry automated BioContainers addition for bioconductor-tweedeseq
GITHUB quay.io/biocontainers/bioconductor-tweedeseqcountdata shpc-registry automated BioContainers addition for bioconductor-tweedeseqcountdata
GITHUB quay.io/biocontainers/bioconductor-twilight shpc-registry automated BioContainers addition for bioconductor-twilight
GITHUB quay.io/biocontainers/bioconductor-twoddpcr shpc-registry automated BioContainers addition for bioconductor-twoddpcr gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-txcutr shpc-registry automated BioContainers addition for bioconductor-txcutr
GITHUB quay.io/biocontainers/bioconductor-txdb.btaurus.ucsc.bostau8.refgene shpc-registry automated BioContainers addition for bioconductor-txdb.btaurus.ucsc.bostau8.refgene gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-txdb.btaurus.ucsc.bostau9.refgene shpc-registry automated BioContainers addition for bioconductor-txdb.btaurus.ucsc.bostau9.refgene
GITHUB quay.io/biocontainers/bioconductor-txdb.celegans.ucsc.ce11.ensgene shpc-registry automated BioContainers addition for bioconductor-txdb.celegans.ucsc.ce11.ensgene gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-txdb.celegans.ucsc.ce11.refgene shpc-registry automated BioContainers addition for bioconductor-txdb.celegans.ucsc.ce11.refgene
GITHUB quay.io/biocontainers/bioconductor-txdb.celegans.ucsc.ce6.ensgene shpc-registry automated BioContainers addition for bioconductor-txdb.celegans.ucsc.ce6.ensgene x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-txdb.drerio.ucsc.danrer10.refgene shpc-registry automated BioContainers addition for bioconductor-txdb.drerio.ucsc.danrer10.refgene
GITHUB quay.io/biocontainers/bioconductor-txdb.drerio.ucsc.danrer11.refgene shpc-registry automated BioContainers addition for bioconductor-txdb.drerio.ucsc.danrer11.refgene
GITHUB quay.io/biocontainers/bioconductor-txdb.ggallus.ucsc.galgal4.refgene shpc-registry automated BioContainers addition for bioconductor-txdb.ggallus.ucsc.galgal4.refgene gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-txdb.ggallus.ucsc.galgal5.refgene shpc-registry automated BioContainers addition for bioconductor-txdb.ggallus.ucsc.galgal5.refgene gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-txdb.ggallus.ucsc.galgal6.refgene shpc-registry automated BioContainers addition for bioconductor-txdb.ggallus.ucsc.galgal6.refgene
GITHUB quay.io/biocontainers/bioconductor-txdb.hsapiens.biomart.igis shpc-registry automated BioContainers addition for bioconductor-txdb.hsapiens.biomart.igis
GITHUB quay.io/biocontainers/bioconductor-txdb.hsapiens.ucsc.hg18.knowngene shpc-registry automated BioContainers addition for bioconductor-txdb.hsapiens.ucsc.hg18.knowngene x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-txdb.hsapiens.ucsc.hg19.knowngene shpc-registry automated BioContainers addition for bioconductor-txdb.hsapiens.ucsc.hg19.knowngene x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene shpc-registry automated BioContainers addition for bioconductor-txdb.hsapiens.ucsc.hg38.knowngene gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-txdb.hsapiens.ucsc.hg38.refgene shpc-registry automated BioContainers addition for bioconductor-txdb.hsapiens.ucsc.hg38.refgene
GITHUB quay.io/biocontainers/bioconductor-txdb.mmusculus.ucsc.mm10.ensgene shpc-registry automated BioContainers addition for bioconductor-txdb.mmusculus.ucsc.mm10.ensgene 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-txdb.mmusculus.ucsc.mm39.refgene shpc-registry automated BioContainers addition for bioconductor-txdb.mmusculus.ucsc.mm39.refgene
GITHUB quay.io/biocontainers/bioconductor-txdb.mmusculus.ucsc.mm9.knowngene shpc-registry automated BioContainers addition for bioconductor-txdb.mmusculus.ucsc.mm9.knowngene x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-txdb.rnorvegicus.biomart.igis shpc-registry automated BioContainers addition for bioconductor-txdb.rnorvegicus.biomart.igis
GITHUB quay.io/biocontainers/bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene shpc-registry automated BioContainers addition for bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene shpc-registry automated BioContainers addition for bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene shpc-registry automated BioContainers addition for bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene
GITHUB quay.io/biocontainers/bioconductor-txdb.rnorvegicus.ucsc.rn7.refgene shpc-registry automated BioContainers addition for bioconductor-txdb.rnorvegicus.ucsc.rn7.refgene
GITHUB quay.io/biocontainers/bioconductor-txdb.sscrofa.ucsc.susscr3.refgene shpc-registry automated BioContainers addition for bioconductor-txdb.sscrofa.ucsc.susscr3.refgene gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-tximeta shpc-registry automated BioContainers addition for bioconductor-tximeta x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-tximport shpc-registry automated BioContainers addition for bioconductor-tximport ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-tximportdata shpc-registry automated BioContainers addition for bioconductor-tximportdata
GITHUB quay.io/biocontainers/bioconductor-txreginfra shpc-registry automated BioContainers addition for bioconductor-txreginfra 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-typeinfo shpc-registry automated BioContainers addition for bioconductor-typeinfo
GITHUB quay.io/biocontainers/bioconductor-u133aaofav2cdf shpc-registry automated BioContainers addition for bioconductor-u133aaofav2cdf
GITHUB quay.io/biocontainers/bioconductor-u133x3p.db shpc-registry automated BioContainers addition for bioconductor-u133x3p.db
GITHUB quay.io/biocontainers/bioconductor-u133x3pcdf shpc-registry automated BioContainers addition for bioconductor-u133x3pcdf
GITHUB quay.io/biocontainers/bioconductor-u133x3pprobe shpc-registry automated BioContainers addition for bioconductor-u133x3pprobe
GITHUB quay.io/biocontainers/bioconductor-ucell singularity registry hpc automated addition for bioconductor-ucell installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-ucscrepeatmasker singularity registry hpc automated addition for bioconductor-ucscrepeatmasker installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-ularcirc shpc-registry automated BioContainers addition for bioconductor-ularcirc x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-umi4cats shpc-registry automated BioContainers addition for bioconductor-umi4cats x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify
GITHUB quay.io/biocontainers/bioconductor-uncoverapplib shpc-registry automated BioContainers addition for bioconductor-uncoverapplib pandoc
GITHUB quay.io/biocontainers/bioconductor-undo shpc-registry automated BioContainers addition for bioconductor-undo
GITHUB quay.io/biocontainers/bioconductor-unifiedwmwqpcr shpc-registry automated BioContainers addition for bioconductor-unifiedwmwqpcr
GITHUB quay.io/biocontainers/bioconductor-uniprot.ws shpc-registry automated BioContainers addition for bioconductor-uniprot.ws
GITHUB quay.io/biocontainers/bioconductor-uniprotkeywords singularity registry hpc automated addition for bioconductor-uniprotkeywords installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-uniquorn shpc-registry automated BioContainers addition for bioconductor-uniquorn 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-universalmotif shpc-registry automated BioContainers addition for bioconductor-universalmotif x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-updateobject singularity registry hpc automated addition for bioconductor-updateobject
GITHUB quay.io/biocontainers/bioconductor-usort shpc-registry automated BioContainers addition for bioconductor-usort wget, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv
GITHUB quay.io/biocontainers/bioconductor-vaexprs shpc-registry automated BioContainers addition for bioconductor-vaexprs jaotc, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs, pack200, rmic
GITHUB quay.io/biocontainers/bioconductor-vanillaice shpc-registry automated BioContainers addition for bioconductor-vanillaice
GITHUB quay.io/biocontainers/bioconductor-varcon shpc-registry automated BioContainers addition for bioconductor-varcon
GITHUB quay.io/biocontainers/bioconductor-variancepartition shpc-registry automated BioContainers addition for bioconductor-variancepartition ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-variantannotation shpc-registry automated BioContainers addition for bioconductor-variantannotation
GITHUB quay.io/biocontainers/bioconductor-variantexperiment shpc-registry automated BioContainers addition for bioconductor-variantexperiment
GITHUB quay.io/biocontainers/bioconductor-variantfiltering shpc-registry automated BioContainers addition for bioconductor-variantfiltering
GITHUB quay.io/biocontainers/bioconductor-varianttools shpc-registry automated BioContainers addition for bioconductor-varianttools
GITHUB quay.io/biocontainers/bioconductor-varianttoolsdata shpc-registry automated BioContainers addition for bioconductor-varianttoolsdata gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-vasp shpc-registry automated BioContainers addition for bioconductor-vasp
GITHUB quay.io/biocontainers/bioconductor-vbmp shpc-registry automated BioContainers addition for bioconductor-vbmp
GITHUB quay.io/biocontainers/bioconductor-vcfarray shpc-registry automated BioContainers addition for bioconductor-vcfarray x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-vdjdive singularity registry hpc automated addition for bioconductor-vdjdive installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-vectrapolarisdata singularity registry hpc automated addition for bioconductor-vectrapolarisdata x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500
GITHUB quay.io/biocontainers/bioconductor-vega shpc-registry automated BioContainers addition for bioconductor-vega 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-vegamc shpc-registry automated BioContainers addition for bioconductor-vegamc
GITHUB quay.io/biocontainers/bioconductor-velociraptor shpc-registry automated BioContainers addition for bioconductor-velociraptor
GITHUB quay.io/biocontainers/bioconductor-veloviz shpc-registry automated BioContainers addition for bioconductor-veloviz glpsol
GITHUB quay.io/biocontainers/bioconductor-venndetail shpc-registry automated BioContainers addition for bioconductor-venndetail x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-verso shpc-registry automated BioContainers addition for bioconductor-verso
GITHUB quay.io/biocontainers/bioconductor-vidger shpc-registry automated BioContainers addition for bioconductor-vidger pandoc-citeproc, pandoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-viper shpc-registry automated BioContainers addition for bioconductor-viper
GITHUB quay.io/biocontainers/bioconductor-viseago shpc-registry automated BioContainers addition for bioconductor-viseago
GITHUB quay.io/biocontainers/bioconductor-visiumio singularity registry hpc automated addition for bioconductor-visiumio dec265, x265, rav1e, SvtAv1EncApp, dav1d, aomdec, aomenc, x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, display, identify, import, magick, magick-script, mogrify, montage
GITHUB quay.io/biocontainers/bioconductor-visse shpc-registry automated BioContainers addition for bioconductor-visse
GITHUB quay.io/biocontainers/bioconductor-vitisviniferacdf shpc-registry automated BioContainers addition for bioconductor-vitisviniferacdf
GITHUB quay.io/biocontainers/bioconductor-vitisviniferaprobe shpc-registry automated BioContainers addition for bioconductor-vitisviniferaprobe
GITHUB quay.io/biocontainers/bioconductor-voyager singularity registry hpc automated addition for bioconductor-voyager pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, udunits2, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, dap-config, dap-config-pkgconfig, gdal-config, gdal_contour, gdal_grid, gdal_rasterize, gdal_translate
GITHUB quay.io/biocontainers/bioconductor-vplotr shpc-registry automated BioContainers addition for bioconductor-vplotr
GITHUB quay.io/biocontainers/bioconductor-vsclust singularity registry hpc automated addition for bioconductor-vsclust installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-vsn shpc-registry automated BioContainers addition for bioconductor-vsn
GITHUB quay.io/biocontainers/bioconductor-vtpnet shpc-registry automated BioContainers addition for bioconductor-vtpnet
GITHUB quay.io/biocontainers/bioconductor-vulcan shpc-registry automated BioContainers addition for bioconductor-vulcan gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-vulcandata shpc-registry automated BioContainers addition for bioconductor-vulcandata gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-waddr shpc-registry automated BioContainers addition for bioconductor-waddr f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bioconductor-watermelon shpc-registry automated BioContainers addition for bioconductor-watermelon
GITHUB quay.io/biocontainers/bioconductor-wavcluster shpc-registry automated BioContainers addition for bioconductor-wavcluster
GITHUB quay.io/biocontainers/bioconductor-wavetiling shpc-registry automated BioContainers addition for bioconductor-wavetiling gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-wavetilingdata shpc-registry automated BioContainers addition for bioconductor-wavetilingdata x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-weaver shpc-registry automated BioContainers addition for bioconductor-weaver
GITHUB quay.io/biocontainers/bioconductor-webbioc shpc-registry automated BioContainers addition for bioconductor-webbioc
GITHUB quay.io/biocontainers/bioconductor-weberdivechalcdata singularity registry hpc automated addition for bioconductor-weberdivechalcdata x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500
GITHUB quay.io/biocontainers/bioconductor-weitrix shpc-registry automated BioContainers addition for bioconductor-weitrix
GITHUB quay.io/biocontainers/bioconductor-wes.1kg.wugsc shpc-registry automated BioContainers addition for bioconductor-wes.1kg.wugsc
GITHUB quay.io/biocontainers/bioconductor-wgsmapp shpc-registry automated BioContainers addition for bioconductor-wgsmapp
GITHUB quay.io/biocontainers/bioconductor-wheatcdf shpc-registry automated BioContainers addition for bioconductor-wheatcdf
GITHUB quay.io/biocontainers/bioconductor-wheatprobe shpc-registry automated BioContainers addition for bioconductor-wheatprobe
GITHUB quay.io/biocontainers/bioconductor-widgettools shpc-registry automated BioContainers addition for bioconductor-widgettools
GITHUB quay.io/biocontainers/bioconductor-wiggleplotr shpc-registry automated BioContainers addition for bioconductor-wiggleplotr gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-worm.db0 shpc-registry automated BioContainers addition for bioconductor-worm.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-wpm shpc-registry automated BioContainers addition for bioconductor-wpm
GITHUB quay.io/biocontainers/bioconductor-wppi shpc-registry automated BioContainers addition for bioconductor-wppi
GITHUB quay.io/biocontainers/bioconductor-wrench shpc-registry automated BioContainers addition for bioconductor-wrench x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-xbseq shpc-registry automated BioContainers addition for bioconductor-xbseq wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/bioconductor-xcir shpc-registry automated BioContainers addition for bioconductor-xcir
GITHUB quay.io/biocontainers/bioconductor-xcms shpc-registry automated BioContainers addition for bioconductor-xcms gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp
GITHUB quay.io/biocontainers/bioconductor-xcore singularity registry hpc automated addition for bioconductor-xcore installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-xcoredata singularity registry hpc automated addition for bioconductor-xcoredata installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-xde shpc-registry automated BioContainers addition for bioconductor-xde
GITHUB quay.io/biocontainers/bioconductor-xenopus.db0 shpc-registry automated BioContainers addition for bioconductor-xenopus.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-xenopuslaeviscdf shpc-registry automated BioContainers addition for bioconductor-xenopuslaeviscdf
GITHUB quay.io/biocontainers/bioconductor-xenopuslaevisprobe shpc-registry automated BioContainers addition for bioconductor-xenopuslaevisprobe
GITHUB quay.io/biocontainers/bioconductor-xeva shpc-registry automated BioContainers addition for bioconductor-xeva x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-xhybcasneuf shpc-registry automated BioContainers addition for bioconductor-xhybcasneuf
GITHUB quay.io/biocontainers/bioconductor-xina shpc-registry automated BioContainers addition for bioconductor-xina x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-xlaevis.db shpc-registry automated BioContainers addition for bioconductor-xlaevis.db
GITHUB quay.io/biocontainers/bioconductor-xlaevis2cdf shpc-registry automated BioContainers addition for bioconductor-xlaevis2cdf
GITHUB quay.io/biocontainers/bioconductor-xlaevis2probe shpc-registry automated BioContainers addition for bioconductor-xlaevis2probe
GITHUB quay.io/biocontainers/bioconductor-xmapbridge shpc-registry automated BioContainers addition for bioconductor-xmapbridge
GITHUB quay.io/biocontainers/bioconductor-xnastring shpc-registry automated BioContainers addition for bioconductor-xnastring pandoc-server, pandoc
GITHUB quay.io/biocontainers/bioconductor-xtropicaliscdf shpc-registry automated BioContainers addition for bioconductor-xtropicaliscdf
GITHUB quay.io/biocontainers/bioconductor-xtropicalisprobe shpc-registry automated BioContainers addition for bioconductor-xtropicalisprobe
GITHUB quay.io/biocontainers/bioconductor-xvector shpc-registry automated BioContainers addition for bioconductor-xvector
GITHUB quay.io/biocontainers/bioconductor-yamss shpc-registry automated BioContainers addition for bioconductor-yamss gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp
GITHUB quay.io/biocontainers/bioconductor-yapsa shpc-registry automated BioContainers addition for bioconductor-yapsa wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-yaqcaffy shpc-registry automated BioContainers addition for bioconductor-yaqcaffy x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-yarn shpc-registry automated BioContainers addition for bioconductor-yarn wget, c89, c99
GITHUB quay.io/biocontainers/bioconductor-ye6100subacdf shpc-registry automated BioContainers addition for bioconductor-ye6100subacdf
GITHUB quay.io/biocontainers/bioconductor-ye6100subbcdf shpc-registry automated BioContainers addition for bioconductor-ye6100subbcdf
GITHUB quay.io/biocontainers/bioconductor-ye6100subccdf shpc-registry automated BioContainers addition for bioconductor-ye6100subccdf
GITHUB quay.io/biocontainers/bioconductor-ye6100subdcdf shpc-registry automated BioContainers addition for bioconductor-ye6100subdcdf
GITHUB quay.io/biocontainers/bioconductor-yeast.db0 shpc-registry automated BioContainers addition for bioconductor-yeast.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-yeast2.db shpc-registry automated BioContainers addition for bioconductor-yeast2.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-yeast2cdf shpc-registry automated BioContainers addition for bioconductor-yeast2cdf
GITHUB quay.io/biocontainers/bioconductor-yeast2probe shpc-registry automated BioContainers addition for bioconductor-yeast2probe
GITHUB quay.io/biocontainers/bioconductor-yeastcc shpc-registry automated BioContainers addition for bioconductor-yeastcc
GITHUB quay.io/biocontainers/bioconductor-yeastexpdata shpc-registry automated BioContainers addition for bioconductor-yeastexpdata
GITHUB quay.io/biocontainers/bioconductor-yeastgsdata shpc-registry automated BioContainers addition for bioconductor-yeastgsdata
GITHUB quay.io/biocontainers/bioconductor-yeastnagalakshmi shpc-registry automated BioContainers addition for bioconductor-yeastnagalakshmi
GITHUB quay.io/biocontainers/bioconductor-yeastrnaseq shpc-registry automated BioContainers addition for bioconductor-yeastrnaseq
GITHUB quay.io/biocontainers/bioconductor-ygs98.db shpc-registry automated BioContainers addition for bioconductor-ygs98.db x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-ygs98cdf shpc-registry automated BioContainers addition for bioconductor-ygs98cdf
GITHUB quay.io/biocontainers/bioconductor-ygs98frmavecs shpc-registry automated BioContainers addition for bioconductor-ygs98frmavecs
GITHUB quay.io/biocontainers/bioconductor-ygs98probe shpc-registry automated BioContainers addition for bioconductor-ygs98probe
GITHUB quay.io/biocontainers/bioconductor-yri1kgv shpc-registry automated BioContainers addition for bioconductor-yri1kgv x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-yrimulti shpc-registry automated BioContainers addition for bioconductor-yrimulti 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-zebrafish.db shpc-registry automated BioContainers addition for bioconductor-zebrafish.db
GITHUB quay.io/biocontainers/bioconductor-zebrafish.db0 shpc-registry automated BioContainers addition for bioconductor-zebrafish.db0 gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-zebrafishcdf shpc-registry automated BioContainers addition for bioconductor-zebrafishcdf
GITHUB quay.io/biocontainers/bioconductor-zebrafishprobe shpc-registry automated BioContainers addition for bioconductor-zebrafishprobe
GITHUB quay.io/biocontainers/bioconductor-zebrafishrnaseq shpc-registry automated BioContainers addition for bioconductor-zebrafishrnaseq x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/bioconductor-zellkonverter shpc-registry automated BioContainers addition for bioconductor-zellkonverter
GITHUB quay.io/biocontainers/bioconductor-zenith singularity registry hpc automated addition for bioconductor-zenith installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/bioconductor-zfpkm shpc-registry automated BioContainers addition for bioconductor-zfpkm gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-zinbwave shpc-registry automated BioContainers addition for bioconductor-zinbwave gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bioconductor-zlibbioc shpc-registry automated BioContainers addition for bioconductor-zlibbioc
GITHUB quay.io/biocontainers/bioconductor-zygositypredictor singularity registry hpc automated addition for bioconductor-zygositypredictor hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1
GITHUB quay.io/biocontainers/bioconvert shpc-registry automated BioContainers addition for bioconvert abi-dump.2.11.0, abi-load, abi-load.2, abi-load.2.11.0, align-cache.2.11.0, align-info.2.11.0, alignmentSieve, bam-load.2.11.0, bamCompare, bamCoverage, bamPEFragmentSize, bigWigToBedGraph, bigwigCompare, bioconvert, bioconvert_init, bioconvert_stats, biosniff, cache-mgr.2.11.0, ccextract, ccextract.2, ccextract.2.11.0, cg-load.2.11.0, computeGCBias, computeMatrix, computeMatrixOperations, correctGCBias, deeptools, dsrc, estimateReadFiltering, estimateScaleFactor, fasterq-dump-orig.2.11.0, fasterq-dump.2.11.0, fastq-dump-orig.2.11.0, fastq-dump.2.11.0, fastq-load, fastq-load.2, fastq-load.2.11.0, go, gofmt, helicos-load, helicos-load.2, helicos-load.2.11.0, illumina-dump.2.11.0, illumina-load, illumina-load.2, illumina-load.2.11.0, kar.2.11.0, kdbmeta.2.11.0, kget.2.11.0, latf-load.2.11.0, ldc-build-runtime, ldc-profdata, ldc-prune-cache, ldc2, ldmd2, mawk, md5cp.2.11.0, mosdepth, multiBamSummary, multiBigwigSummary, pacbio-load, pacbio-load.2, pacbio-load.2.11.0, pacbio-loadxml, pacbio-loadxml.2, pacbio-loadxml.2.11.0, plink, plotCorrelation, plotCoverage, plotEnrichment, plotFingerprint, plotHeatmap, plotPCA, plotProfile, prefetch-orig.2.11.0, prefetch.2.11.0, rcexplain.2.11.0, read-filter-redact.2.11.0, sam-dump-orig.2.11.0, sam-dump.2.11.0, sff-dump.2.11.0, sff-load, sff-load.2, sff-load.2.11.0, squizz, sra-pileup-orig.2.11.0, sra-pileup.2.11.0, sra-sort-cg.2.11.0, sra-sort.2.11.0, sra-stat.2.11.0, srapath-orig.2.11.0, srapath.2.11.0, sratools.2.11.0, srf-load, srf-load.2, srf-load.2.11.0, test-sra.2.11.0, vdb-config.2.11.0, vdb-copy.2.11.0, vdb-decrypt.2.11.0, vdb-diff.2.11.0, vdb-dump-orig.2.11.0, vdb-dump.2.11.0, vdb-encrypt.2.11.0, vdb-lock.2.11.0, vdb-passwd.2.11.0, vdb-unlock.2.11.0, vdb-validate.2.11.0, wiggletools, sambamba, align-cache.2, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical
GITHUB quay.io/biocontainers/biodiff shpc-registry automated BioContainers addition for biodiff biodiff, udiff2vcf, perl5.32.1, streamzip
GITHUB quay.io/biocontainers/biodigest singularity registry hpc automated addition for biodigest bioservices, gseapy, gtk-builder-tool, gtk-encode-symbolic-svg, gtk-launch, gtk-query-immodules-3.0, gtk-query-settings, wayland-scanner, browse, xkbcli, pcre2posix_test, rsvg-convert, cups-config, ippeveprinter, ipptool, gtk-update-icon-cache, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, hb-info, dbus-cleanup-sockets, dbus-daemon, dbus-launch, dbus-monitor, dbus-run-session, dbus-send, dbus-test-tool, dbus-update-activation-environment, dbus-uuidgen, xslt-config, xsltproc, tqdm
GITHUB quay.io/biocontainers/bioepic shpc-registry automated BioContainers addition for bioepic epic, epic-effective, easy_install-3.5, natsort, faidx, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config
GITHUB quay.io/biocontainers/bioexcel_seqqc shpc-registry automated BioContainers addition for bioexcel_seqqc bxcl_seqqc, cutadapt, fastqc, pigz, unpigz, jaotc, jdeprscan, jhsdb, jimage, jlink, jmod
GITHUB quay.io/biocontainers/biofluff shpc-registry automated BioContainers addition for biofluff fluff, htseq-count-barcodes, htseq-count, htseq-qa, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py
GITHUB quay.io/biocontainers/bioformats shpc-registry automated BioContainers addition for bioformats bioformats, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, futurize, pasteurize, 2to3-3.8, idle3.8, pydoc3.8, python3.8
GITHUB quay.io/biocontainers/bioframe shpc-registry automated BioContainers addition for bioframe bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix, pairs_merger
GITHUB quay.io/biocontainers/biogridpy shpc-registry automated BioContainers addition for biogridpy 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/bioinfokit shpc-registry automated BioContainers addition for bioinfokit tabulate, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump
GITHUB quay.io/biocontainers/biokit shpc-registry automated BioContainers addition for biokit easydev_buildPackage, ibrowse, multigit, browse, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, rst2html4.py
GITHUB quay.io/biocontainers/biolib shpc-registry automated BioContainers addition for biolib f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc
GITHUB quay.io/biocontainers/biolite-tools shpc-registry automated BioContainers addition for biolite-tools bl-coverage, bl-exclude, bl-fasta2fastq, bl-fastq2fasta, bl-filter-illumina, bl-insert-stats, bl-interleave, bl-pair-reads, bl-pileup-stats, bl-randomize, bl-threshold
GITHUB quay.io/biocontainers/biolite shpc-registry automated BioContainers addition for biolite
GITHUB quay.io/biocontainers/biom-format shpc-registry automated BioContainers addition for biom-format pyqi, unit2, conv-template, from-template, biom, futurize, pasteurize, python2-config, python2.7-config, python2, python2.7
GITHUB quay.io/biocontainers/biomaj shpc-registry automated BioContainers addition for biomaj biomaj-cli.py, tabulate, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5
GITHUB quay.io/biocontainers/bionetcomp shpc-registry automated BioContainers addition for bionetcomp bionetcomp, gseapy, easydev_buildPackage, ibrowse, multigit, browse, xslt-config, xsltproc, chardetect, f2py3.9, opj_compress, opj_decompress
GITHUB quay.io/biocontainers/bionumpy singularity registry hpc automated addition for bionumpy bionumpy, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1
GITHUB quay.io/biocontainers/biopet-bamstats shpc-registry automated BioContainers addition for biopet-bamstats biopet-bamstats, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer
GITHUB quay.io/biocontainers/biopet-basecounter shpc-registry automated BioContainers addition for biopet-basecounter biopet-basecounter, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer
GITHUB quay.io/biocontainers/biopet-extractadaptersfastqc shpc-registry automated BioContainers addition for biopet-extractadaptersfastqc biopet-extractadaptersfastqc, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer
GITHUB quay.io/biocontainers/biopet-fastqsplitter shpc-registry automated BioContainers addition for biopet-fastqsplitter biopet-fastqsplitter, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer
GITHUB quay.io/biocontainers/biopet-sampleconfig shpc-registry automated BioContainers addition for biopet-sampleconfig biopet-sampleconfig, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer
GITHUB quay.io/biocontainers/biopet-scatterregions shpc-registry automated BioContainers addition for biopet-scatterregions biopet-scatterregions, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer
GITHUB quay.io/biocontainers/biopet-seattleseqkit shpc-registry automated BioContainers addition for biopet-seattleseqkit biopet-seattleseqkit, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer
GITHUB quay.io/biocontainers/biopet-seqstat shpc-registry automated BioContainers addition for biopet-seqstat biopet-seqstat, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer
GITHUB quay.io/biocontainers/biopet-validateannotation shpc-registry automated BioContainers addition for biopet-validateannotation biopet-validateannotation, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer
GITHUB quay.io/biocontainers/biopet-validatefastq shpc-registry automated BioContainers addition for biopet-validatefastq biopet-validatefastq, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer
GITHUB quay.io/biocontainers/biopet-validatevcf shpc-registry automated BioContainers addition for biopet-validatevcf biopet-validatevcf, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer
GITHUB quay.io/biocontainers/biopet-vcffilter shpc-registry automated BioContainers addition for biopet-vcffilter biopet-vcffilter, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer
GITHUB quay.io/biocontainers/biopet-vcfstats shpc-registry automated BioContainers addition for biopet-vcfstats biopet-vcfstats, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer
GITHUB quay.io/biocontainers/biopet shpc-registry automated BioContainers addition for biopet
GITHUB quay.io/biocontainers/biophi shpc-registry automated BioContainers addition for biophi ANARCI, biophi, celery, fairseq-eval-lm, fairseq-generate, fairseq-interactive, fairseq-preprocess, fairseq-score, fairseq-train, fairseq-validate, sacrebleu, sapiens, torchrun, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, vba_extract.py, flask, tabulate, cygdb, cython, cythonize, hmmpgmd_shard
GITHUB quay.io/biocontainers/bioprov shpc-registry automated BioContainers addition for bioprov bioprov, coveralls, prov-compare, prov-convert, coverage, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, py.test, pytest, prodigal, diffimg
GITHUB quay.io/biocontainers/biopython.convert shpc-registry automated BioContainers addition for biopython.convert biopython.convert, pbr, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, jp.py, faidx, f2py3.10, 2to3-3.10
GITHUB quay.io/biocontainers/biopython shpc-registry automated BioContainers addition for biopython
GITHUB quay.io/biocontainers/bioservices shpc-registry automated BioContainers addition for bioservices easydev_buildPackage, ibrowse, multigit, browse, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, rst2html4.py
GITHUB quay.io/biocontainers/biosniff singularity registry hpc automated addition for biosniff biosniff, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/biotdg shpc-registry automated BioContainers addition for biotdg biotdg, dwgsim, dwgsim_eval, cyvcf2, coloredlogs, humanfriendly, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m
GITHUB quay.io/biocontainers/biothings_client shpc-registry automated BioContainers addition for biothings_client normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/biotradis shpc-registry automated BioContainers addition for biotradis add_tradis_tags, bacteria_tradis, basqcol, check_tradis_tags, combine_tradis_plots, fetchseq, filter_tradis_tags, mixreads, readstats, remove_tradis_tags, simqual, simread, smalt, splitmates, splitreads, tradis_comparison.R, tradis_essentiality.R, tradis_gene_insert_sites, tradis_merge_plots, tradis_plot, trunkreads, config_data, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml, basemlg, chi2, codeml, evolver
GITHUB quay.io/biocontainers/biotransformer shpc-registry automated BioContainers addition for biotransformer biotransformer, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, 2to3-3.10
GITHUB quay.io/biocontainers/bioutils shpc-registry automated BioContainers addition for bioutils normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/biowdl-input-converter shpc-registry automated BioContainers addition for biowdl-input-converter biowdl-input-converter, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/biox singularity registry hpc automated addition for biox biox, get_gprof, idle3.13, pydoc3.13, python3.13, python3.13-config, get_objgraph, undill, numpy-config, tqdm
GITHUB quay.io/biocontainers/bird_tool_utils_python shpc-registry automated BioContainers addition for bird_tool_utils_python x86_64-conda_cos7-linux-gnu-ld, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/bis-snp-utils shpc-registry automated BioContainers addition for bis-snp-utils annotateBed_2way.pl, mergeBamWithSameSM.pl, sep_line_by_name.pl, sortByRefAndCor.pl, uniqLine.pl, vcf2bed.NOME.pl, vcf2bed.pl, vcf2bed6plus2.pl, vcf2bed6plus2.strand.pl, vcf2bedGraph.pl, vcf2coverage.pl, vcf2wig.pl, vcf2wig_ct_coverage.pl, vcf4ToRod_in_specific_pos.pl, gtf2bed.pl, perl5.32.0, streamzip
GITHUB quay.io/biocontainers/bis-snp shpc-registry automated BioContainers addition for bis-snp
GITHUB quay.io/biocontainers/biscot singularity registry hpc automated addition for biscot biscot, coloredlogs, humanfriendly, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv
GITHUB quay.io/biocontainers/biscuit shpc-registry automated BioContainers addition for biscuit QC.sh, biscuit, build_biscuit_QC_assets.pl, build_biscuit_QC_assets.pl.bak, perl5.32.1, streamzip
GITHUB quay.io/biocontainers/biskit shpc-registry automated BioContainers addition for biskit bis.py, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/bismark shpc-registry automated BioContainers addition for bismark Bismark_alignment_modes.pdf, NOMe_filtering, _config.yml, bam2nuc, bismark, bismark2bedGraph, bismark2report, bismark2summary, bismark_genome_preparation, bismark_methylation_extractor, copy_bismark_files_for_release.pl, coverage2cytosine, deduplicate_bismark, extract_exons.py, extract_splice_sites.py, filter_non_conversion, hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, license.txt, methylation_consistency, test_data.fastq, metadata_conda_debug.yaml, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s
GITHUB quay.io/biocontainers/bitmapperbs shpc-registry automated BioContainers addition for bitmapperbs bitmapperBS, psascan
GITHUB quay.io/biocontainers/bitstring shpc-registry automated BioContainers addition for bitstring 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/blacksheep-outliers shpc-registry automated BioContainers addition for blacksheep-outliers deva, qhelpconverter, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner, repc, pylupdate5, pyrcc5
GITHUB quay.io/biocontainers/blasr shpc-registry automated BioContainers addition for blasr bam2sam, blasr, loadPulses, pbindex, pbindexdump, pbmerge, pls2fasta, samFilter, samtoh5, samtom4, sawriter, sdpMatcher, easy_install-3.6, uconv, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6
GITHUB quay.io/biocontainers/blast-legacy shpc-registry automated BioContainers addition for blast-legacy bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb, impala, makemat
GITHUB quay.io/biocontainers/blast shpc-registry automated BioContainers addition for blast blast_formatter, blastdb_aliastool, blastdbcheck, blastdbcmd, blastn, blastp, blastx, cleanup-blastdb-volumes.py, convert2blastmask, deltablast, eblast, makeblastdb, psiblast, rpsblast, rpstblastn, tblastn, tblastx, update_blastdb.pl
GITHUB quay.io/biocontainers/blast2galaxy singularity registry hpc automated addition for blast2galaxy bioblend-galaxy-tests, blast2galaxy, markdown-it, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, pygmentize, normalizer
GITHUB quay.io/biocontainers/blastalign shpc-registry automated BioContainers addition for blastalign BlastAlign, BlastAlign.py, BlastAlignP, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb, impala, makemat
GITHUB quay.io/biocontainers/blastbesties shpc-registry automated BioContainers addition for blastbesties blastbesties, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/blastmining singularity registry hpc automated addition for blastmining blastMining, blastMining_lca.sh, blastMining_lca2.sh, csvtk, f2py3.11, ktClassifyHits, ktImportHits, run_besthit.py, run_lca.py, run_vote.py, run_voteSpecies.py, tab2krona.py, taxonkit, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, ktClassifyBLAST, ktGetContigMagnitudes, ktGetLCA, ktGetLibPath, ktGetTaxIDFromAcc, ktGetTaxInfo, ktImportBLAST, ktImportDiskUsage, ktImportEC, ktImportFCP, ktImportGalaxy, ktImportKrona, ktImportMETAREP-BLAST, ktImportMETAREP-EC, ktImportMGRAST, ktImportPhymmBL, ktImportRDP, ktImportRDPComparison, ktImportTaxonomy, ktImportText
GITHUB quay.io/biocontainers/blaze2 singularity registry hpc automated addition for blaze2 blaze, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tqdm, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc
GITHUB quay.io/biocontainers/bleach shpc-registry automated BioContainers addition for bleach easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5
GITHUB quay.io/biocontainers/blend-bio singularity registry hpc automated addition for blend-bio blend, sdust
GITHUB quay.io/biocontainers/bleties shpc-registry automated BioContainers addition for bleties NCRF, bleties, milcor_plot.py, milraa_plot.py, ncrf_cat, ncrf_cat.py, ncrf_consensus_filter, ncrf_consensus_filter.py, ncrf_parse.py, ncrf_resolve_overlaps, ncrf_resolve_overlaps.py, ncrf_sort, ncrf_sort.py, ncrf_summary, ncrf_summary.py, ncrf_to_bed, ncrf_to_bed.py, spoa, muscle, f2py3.7, opj_compress, opj_decompress, opj_dump, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config
GITHUB quay.io/biocontainers/blinker shpc-registry automated BioContainers addition for blinker easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5
GITHUB quay.io/biocontainers/blksheep shpc-registry automated BioContainers addition for blksheep blacksheep, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc
GITHUB quay.io/biocontainers/blobtools shpc-registry automated BioContainers addition for blobtools blobtools, blobtools-build_nodesdb, compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, qwebengine_convert_dict
GITHUB quay.io/biocontainers/blockbuster shpc-registry automated BioContainers addition for blockbuster blockbuster.x
GITHUB quay.io/biocontainers/blockclust shpc-registry automated BioContainers addition for blockclust EDeN, blockclust, blockclust.py, blockclust_plot.r, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray, mcxassemble
GITHUB quay.io/biocontainers/bloocoo shpc-registry automated BioContainers addition for bloocoo Bloocoo
GITHUB quay.io/biocontainers/bloomfiltertrie shpc-registry automated BioContainers addition for bloomfiltertrie bft, jemalloc-config, jeprof, jemalloc.sh
GITHUB quay.io/biocontainers/blosum singularity registry hpc automated addition for blosum 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1
GITHUB quay.io/biocontainers/bmfilter shpc-registry automated BioContainers addition for bmfilter bmfilter
GITHUB quay.io/biocontainers/bmge shpc-registry automated BioContainers addition for bmge bmge, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/bmtagger shpc-registry automated BioContainers addition for bmtagger bmfilter, bmtagger.sh, bmtool, extract_fullseq, srprism, test_pcre, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, seedtop, run_with_lock, blast_formatter, blastdb_aliastool, blastdbcheck
GITHUB quay.io/biocontainers/bmtool shpc-registry automated BioContainers addition for bmtool bmtool
GITHUB quay.io/biocontainers/bohra shpc-registry automated BioContainers addition for bohra abricate, abricate-get_db, abritamr, amr_report, amrfinder, amrfinder_update, bohra, create_pan_genome, create_pan_genome_plots.R, croco-0.6-config, csslint-0.6, dna_mutation, extract_proteome_from_gff, fasta2parts, fasta_check, gff_check, iterative_cdhit, kraken2, kraken2-build, kraken2-inspect, lighter, mlst, pan_genome_assembly_statistics, pan_genome_core_alignment, pan_genome_post_analysis, pan_genome_reorder_spreadsheet, parallel_all_against_all_blastp, protein_alignment_from_nucleotides, query_pan_genome, roary, roary-create_pan_genome_plots.R, roary-pan_genome_reorder_spreadsheet, roary-query_pan_genome, roary-unique_genes_per_sample, shovill, skesa, snippy, snippy-clean_full_aln, snippy-core, snippy-multi, snippy-vcf_extract_subs, snippy-vcf_report, snippy-vcf_to_tab, snp-dists, transfer_annotation_to_groups, vcfnormalizesvs, vcfnull2ref, vcfunphase, x86_64-conda_cos6-linux-gnu-pkg-config, yapp, snp-sites, fix-sqn-date, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, mpichversion, mpivars, parkill, prank, vt
GITHUB quay.io/biocontainers/bold-identification shpc-registry automated BioContainers addition for bold-identification bold_identification, chardetect, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/bolt-lmm shpc-registry automated BioContainers addition for bolt-lmm bolt, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/bolt shpc-registry automated BioContainers addition for bolt
GITHUB quay.io/biocontainers/boltons shpc-registry automated BioContainers addition for boltons easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5
GITHUB quay.io/biocontainers/boms singularity registry hpc automated addition for boms hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10
GITHUB quay.io/biocontainers/booster shpc-registry automated BioContainers addition for booster booster
GITHUB quay.io/biocontainers/boquila singularity registry hpc automated addition for boquila boquila
GITHUB quay.io/biocontainers/borf shpc-registry automated BioContainers addition for borf borf, doesitcache, compile-et.pl, iptest3, prerr.properties, iptest, ipython3, ipython, cygdb, cython, cythonize
GITHUB quay.io/biocontainers/botocore shpc-registry automated BioContainers addition for botocore jp.py, easy_install-3.6, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py
GITHUB quay.io/biocontainers/bottle shpc-registry automated BioContainers addition for bottle bottle.py, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5
GITHUB quay.io/biocontainers/boutroslabplottinggeneral shpc-registry automated BioContainers addition for boutroslabplottinggeneral 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/bowtie shpc-registry automated BioContainers addition for bowtie bowtie, bowtie-align-l, bowtie-align-s, bowtie-build, bowtie-build-l, bowtie-build-s, bowtie-inspect, bowtie-inspect-l, bowtie-inspect-s, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv, perl5.32.1
GITHUB quay.io/biocontainers/bowtie2 shpc-registry automated BioContainers addition for bowtie2 bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, perl5.26.2, podselect
GITHUB quay.io/biocontainers/bpipe shpc-registry automated BioContainers addition for bpipe bg-bpipe, bpipe, bpipe-pbspro.sh, bpipe-slurm.sh, bpipe-torque.sh, bpipe-utils.sh, groovy_script, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown
GITHUB quay.io/biocontainers/bpp-core shpc-registry automated BioContainers addition for bpp-core
GITHUB quay.io/biocontainers/bpp-phyl shpc-registry automated BioContainers addition for bpp-phyl
GITHUB quay.io/biocontainers/bpp-popgen shpc-registry automated BioContainers addition for bpp-popgen
GITHUB quay.io/biocontainers/bpp-seq shpc-registry automated BioContainers addition for bpp-seq
GITHUB quay.io/biocontainers/bracken shpc-registry automated BioContainers addition for bracken bracken, bracken-build, combine_bracken_outputs.py, est_abundance.py, generate_kmer_distribution.py, kmer2read_distr, kraken2, kraken2-build, kraken2-inspect, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, tar, edirect.py, filter-columns, fuse-segments
GITHUB quay.io/biocontainers/braid-mrf singularity registry hpc automated addition for braid-mrf numba, pycc, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, gif2rgb, gifbuild, gifclrmp, giffix
GITHUB quay.io/biocontainers/braker shpc-registry automated BioContainers addition for braker
GITHUB quay.io/biocontainers/braker2 shpc-registry automated BioContainers addition for braker2 GeMoMa, PF00225_full.blocks.txt, PF00225_seed.blocks.txt, SplicedAlignment.pm, aa2nonred.pl, add_name_to_gff3.pl, align2hints.pl, aln2wig, augustify.py, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, bam2wig, bamToWig.py, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, braker.pl, braker_cleanup.pl, catchr.pl, cdbfasta, cdbyank, cegma2gff.pl, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, compare_intervals_exact.pl, compare_masking.pl, compileSpliceCands, computeFlankingRegion.pl, createAugustusJoblist.pl, del_from_prfl.pl, downsample_traingenes.pl, ensure_n_training_genes.py, esd2esi, evalCGP.pl, eval_dualdecomp.pl, eval_multi_gtf.pl, executeTestCGP.py, exonerate, exonerate-server, exonerate2hints.pl, exoniphyDb2hints.pl, extractAnno.py, extractTranscriptEnds.pl, fasta2esd, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds, filter-ppx.pl, filterGenemark.pl, filterGenes.pl, filterGenesIn.pl, filterGenesIn_mRNAname.pl, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterIntronsFindStrand.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, filter_augustus_gff.pl, findGenesInIntrons.pl, findGffNamesInFasta.pl, fix_gtf_ids.py, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, gatech_pmp2hints.pl, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, genePredCheck, genePredToBed, genePredToBigGenePred, getAnnoFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, getSeq, get_loci_from_gb.pl, gff2gbSmallDNA.pl, gff2ps_mycustom, gffGetmRNA.pl, gp2othergp.pl, gtf2aa.pl, gtf2gff.pl, gtfToGenePred, gth, gth2gtf.pl, gthclean.sh, gthcleanrec.sh, gthconsensus, gthfilestat, gthgetseq, gthsplit, gthsplit2dim.sh, gushr.py, hal2maf_split.pl, helpMod.pm, hgGcPercent, ipcress, ixIxx, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, load2sqlitedb, log_reg_prothints.pl, lp_solve, maf2conswig.pl, makblk.pl, makdbs, makeMatchLists.pl, makeUtrTrainingSet.pl, make_hub.py, makeidx.pl, makmdm, maskNregions.pl, merge_masking.pl, merge_transcript_sets.pl, moveParameters.pl, msa2prfl.pl, new_species.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, peptides2alternatives.pl, peptides2hints.pl, phastconsDB2hints.pl, polyA2hints.pl, pp_simScore, prints2prfl.pl, pslMap.pl, randomSplit.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, samMap.pl, scipiogff2gff.pl, setStopCodonFreqs.pl, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, sortGeneMark.py, sortgrcd, spaln, splitMfasta.pl, split_wiggle.pl, spspaln.pl, startAlign.pl, summarizeACGTcontent.pl, transMap2hints.pl, tsebra.py, uniquePeptides.pl, utrgff2gbrowse.pl, utrrnaseq, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, yaml2gff.1.4.pl, augustus, bam2hints, etraining, fastBlockSearch, filterBam, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign, wigToBigWig
GITHUB quay.io/biocontainers/braker3 singularity registry hpc automated addition for braker3 LICENSE.txt, PF00225_full.blocks.txt, PF00225_seed.blocks.txt, add_name_to_gff3.pl, aln2wig, augustify.py, bamToWig.py, braker.pl, braker_cleanup.pl, catchr.pl, compare_intervals_exact.pl, compare_masking.pl, downsample_traingenes.pl, ensure_n_training_genes.py, esd2esi, evidence.py, executeTestCGP.py, exonerate, exonerate-server, extractAnno.py, fasta2esd, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds, features.py, filterGenemark.pl, filterIntronsFindStrand.pl, filter_augustus_gff.pl, findGenesInIntrons.pl, findRepetitiveProtSeqs.py, fix_gtf_ids.py, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, gatech_pmp2hints.pl, genePredCheck, genePredToBigGenePred, genome_anno.py, get_etp_hints.py, get_gc_content.py, get_loci_from_gb.pl, get_longest_isoform.py, gth, gthclean.sh, gthcleanrec.sh, gthconsensus, gthfilestat, gthgetseq, gthsplit, gthsplit2dim.sh, hgGcPercent, ipcress, ixIxx, log_reg_prothints.pl, makblk.pl, makdbs, make_hub.py, makeidx.pl, makmdm, merge_masking.pl, overlap_graph.py, pp_simScore, print_braker3_setup.py, rename_gtf.py, rename_species.pl, sortGeneMark.py, sortgrcd, spaln, spspaln.pl, stringtie2fa.py, tsebra.py, aa2nonred.pl, cdbfasta, cdbyank, compileSpliceCands, computeFlankingRegion.pl, eval_multi_gtf.pl, filterGenesIn.pl, findGffNamesInFasta.pl, genePredToBed, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, gtf2aa.pl, gth2gtf.pl, setStopCodonFreqs.pl, utrrnaseq, gtfToGenePred, SplicedAlignment.pm, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, bam2wig, bedgraph2wig.pl, blat2gbrowse.pl
GITHUB quay.io/biocontainers/brass shpc-registry automated BioContainers addition for brass augment-bam, bamToBw.pl, bam_stats.pl, bam_to_sra_sub.pl, bdf2gdfont.PLS, brass-assemble, brass-group, brass.pl, brassI_filter.pl, brassI_np_in.pl, brassI_pre_filter.pl, brassI_prep_bam.pl, brass_bedpe2vcf.pl, brass_foldback_reads.pl, bwa_aln.pl, bwa_mem.pl, cgpAppendIdsToVcf.pl, cgpVCFSplit.pl, collate_rg_regions.pl, combineResults.pl, compute_coverage.pl, corrected_insertsize.pl, cover, coverage_merge.pl, cpancover, cvtbdf.pl, diff_bams.pl, dotty, esd2esi, exonerate, exonerate-server, faToNib, fasta2esd, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds, filter_with_microbes_and_remapping.pl, filterout-bam, findbp, findbp-all, gcov2perl, get_abs_bkpts_from_clipped_reads.pl, gfClient, gfServer, gnos_pull.pl, grass.pl, ipcress, lneato, make-repeat-file, match_rg_patterns_to_library.pl, merge_double_rgs.pl, monitor.pl, nibFrag, pslPretty, pslReps, pslSort, rearr2bedpe, samcat, samcount, samgroupbyname, samhead, samsort, samsplit, xml_to_bas.pl, yapp, pod_cover, twoBitToFa, blat, velvetg, velveth, twoBitInfo, bp_pairwise_kaks.pl, bp_search2BSML.pl, faToTwoBit, gdlib-config
GITHUB quay.io/biocontainers/brawn singularity registry hpc automated addition for brawn brawn, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1
GITHUB quay.io/biocontainers/break-point-inspector shpc-registry automated BioContainers addition for break-point-inspector break-point-inspector, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/breakdancer shpc-registry automated BioContainers addition for breakdancer bam2cfg.pl, breakdancer-max, gdlib-config, bdf2gdfont.pl, bdftogd, gd2copypal, gd2togif, gd2topng, gdcmpgif, gdparttopng, gdtopng, giftogd2
GITHUB quay.io/biocontainers/breakfast singularity registry hpc automated addition for breakfast breakfast, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/breakseq2 shpc-registry automated BioContainers addition for breakseq2 breakseq2_gen_bplib.py, run_breakseq2.py, cygdb, cython, cythonize, qualfa2fq.pl, xa2multi.pl, bwa, f2py2, f2py2.7, bcftools, vcfutils.pl
GITHUB quay.io/biocontainers/breseq shpc-registry automated BioContainers addition for breseq breseq, gdtools, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, 2to3-3.10
GITHUB quay.io/biocontainers/brewer2mpl shpc-registry automated BioContainers addition for brewer2mpl easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5
GITHUB quay.io/biocontainers/brockman-pipeline shpc-registry automated BioContainers addition for brockman-pipeline AMUSED, AMUSED-KS, alignKMers, brockman_pipeline, bundle, bundler, racc, racc2y, shuffleCodons.rb, shuffleCodonsAddMotifs.rb, y2racc, gdbm_dump, gdbm_load, gdbmtool, jemalloc-config, jeprof, twoBitToFa, jemalloc.sh, erb, gem, irb
GITHUB quay.io/biocontainers/brooklyn_plot singularity registry hpc automated addition for brooklyn_plot brooklyn_plot, h5delete, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, tjbench, scanpy, aec, numba, pycc, natsort, tqdm, fonttools, pyftmerge, pyftsubset, ttx
GITHUB quay.io/biocontainers/bs-seeker2 shpc-registry automated BioContainers addition for bs-seeker2 AUTHORS, Antisense.py, FilterReads.py, RELEASE_NOTES, bs_seeker2-align.py, bs_seeker2-build.py, bs_seeker2-call_methylation.py, metadata_conda_debug.yaml, perl5.32.0, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l
GITHUB quay.io/biocontainers/bs_call shpc-registry automated BioContainers addition for bs_call bs_call, dbSNP_idx
GITHUB quay.io/biocontainers/bsmap shpc-registry automated BioContainers addition for bsmap bsmap, bsp2sam.py, methdiff.py, methratio.py, sam2bam.sh, build_env_setup.sh, conda_build.sh, fasta-sanitize.pl, plot-ampliconstats, python2-config, python2.7-config, python2, python2.7, idle, python-config
GITHUB quay.io/biocontainers/bte singularity registry hpc automated addition for bte protoc, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/btllib singularity registry hpc automated addition for btllib gunzip, gzexe, gzip, indexlr, lrunzip, lrzcat, lrzip, lrztar, lrzuntar, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zmore, znew, zip, tar, pigz, unpigz, idn2, fasta-sanitize.pl, plot-ampliconstats, wget, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl
GITHUB quay.io/biocontainers/btrim shpc-registry automated BioContainers addition for btrim btrim
GITHUB quay.io/biocontainers/bttcmp shpc-registry automated BioContainers addition for bttcmp COG.pl, Gblocks, Plot_ANIheatmap.R, Plot_COG.R, Plot_COG_Abundance.R, Plot_MashHeatmap.R, _gdlib-config, abricate, abricate-get_db, abyss-stack-size, alignGFA, bogart, bogus, bttcmp, canu, canu-time, circlator, contig_break_finder, contig_cleaner, contig_overlap_trimmer, coreprocess.pl, correctOverlaps, create_pan_genome, create_pan_genome_plots.R, dumpBlob, edalign, errorEstimate, extract_proteome_from_gff, falconsense, fastme, filterCorrectionLayouts, filterCorrectionOverlaps, findErrors, findErrors-Dump, fmplot.py, gawk-5.0.1, generateCorrectionLayouts, genome_LenFilter_stats.pl, get_ANImatrix.pl, get_Mash_Matrix.pl, get_all_info_nucl.pl, get_all_info_orfs.pl, get_all_info_prot.pl, get_flag_relative_abundances_table.pl, get_genes_table.pl, gubbins, iterative_cdhit, loadCorrectedReads, loadErates, loadTrimmedReads, mergeRanges, meryl-import, meryl-lookup, mhapConvert, miniasm, minidot, mmapConvert, modeltest-ng, orthofinder, ovStoreBucketizer, ovStoreBuild, ovStoreConfig, ovStoreDump, ovStoreIndexer, ovStoreSorter, ovStoreStats, overlapAlign, overlapConvert, overlapImport, overlapInCore, overlapInCorePartition, overlapPair, pacbio_post_process, pal2nal.pl, pan_genome_assembly_statistics, pan_genome_core_alignment, pan_genome_post_analysis, pan_genome_reorder_spreadsheet, parallel_all_against_all_blastp, pgcgap, plot_3Dpie.R, prefixEditDistance-matchLimitGenerate, protein_alignment_from_nucleotides, query_pan_genome, raxml-ng, raxml-ng-mpi, roary, roary-create_pan_genome_plots.R, roary-pan_genome_reorder_spreadsheet, roary-query_pan_genome, roary-unique_genes_per_sample, run_gubbins.py, scoary, scoary_GUI, scriptlive, sequence, sickle, snippy, snippy-clean_full_aln, snippy-core, snippy-multi, snippy-vcf_extract_subs, snippy-vcf_report, snippy-vcf_to_tab, splitHaplotype, splitReads, sqStoreCreate, sqStoreDumpFASTQ, sqStoreDumpMetaData, tgStoreCompress, tgStoreDump, tgStoreFilter, tgStoreLoad, tgTigDisplay, transfer_annotation_to_groups, triangle2list.pl, trimReads, unicycler, unicycler_align, unicycler_check, unicycler_polish, unicycler_scrub, utgcns, vcf2scoary, vcfnormalizesvs, vcfnull2ref, vcfunphase, wtdbgConvert, yapp, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject
GITHUB quay.io/biocontainers/bttoxin_digger shpc-registry automated BioContainers addition for bttoxin_digger BtToxin_Digger, abyss-rresolver-short, abyss-stack-size, alignGFA, bogart, bogus, canu, canu-time, coreprocess.pl, correctOverlaps, draw-tig, dumpBlob, edalign, errorEstimate, falconsense, filterCorrectionLayouts, filterCorrectionOverlaps, findErrors, findErrors-Dump, fixErrors, generateCorrectionLayouts, genome_LenFilter_stats.pl, get_all_info_nucl.pl, get_all_info_orfs.pl, get_all_info_prot.pl, get_counts.pl, get_genes_table.pl, get_stats_summary.pl, irqtop, layoutReads, loadCorrectedReads, loadErates, loadTrimmedReads, lsirq, mergeRanges, mhapConvert, miniasm, minidot, mmapConvert, nsenter, ovStoreBucketizer, ovStoreBuild, ovStoreConfig, ovStoreDump, ovStoreIndexer, ovStoreSorter, ovStoreStats, overlapAlign, overlapConvert, overlapImport, overlapInCore, overlapInCorePartition, overlapPair, pgcgap, prefixEditDistance-matchLimitGenerate, prlimit, sam_add_rg.pl, scriptlive, splitHaplotype, splitReads, sqStoreCreate, sqStoreDumpFASTQ, sqStoreDumpMetaData, tgStoreCompress, tgStoreDump, tgStoreLoad, tgTigDisplay, trimReads, unicycler, unicycler_align, unicycler_check, unicycler_polish, unicycler_scrub, update_version.sh, utgcns, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject
GITHUB quay.io/biocontainers/bttoxin_scanner shpc-registry automated BioContainers addition for bttoxin_scanner BtToxin_scanner, COG.pl, Gblocks, Plot_ANIheatmap.R, Plot_COG.R, Plot_COG_Abundance.R, Plot_MashHeatmap.R, _gdlib-config, abricate, abricate-get_db, abyss-stack-size, alignGFA, bogart, bogus, canu, canu-time, circlator, contig_break_finder, contig_cleaner, contig_overlap_trimmer, coreprocess.pl, correctOverlaps, create_pan_genome, create_pan_genome_plots.R, dumpBlob, edalign, errorEstimate, extract_proteome_from_gff, falconsense, fastme, filterCorrectionLayouts, filterCorrectionOverlaps, findErrors, findErrors-Dump, fmplot.py, gawk-5.0.1, generateCorrectionLayouts, genome_LenFilter_stats.pl, get_ANImatrix.pl, get_Mash_Matrix.pl, get_all_info_nucl.pl, get_all_info_orfs.pl, get_all_info_prot.pl, get_flag_relative_abundances_table.pl, get_genes_table.pl, gubbins, iterative_cdhit, loadCorrectedReads, loadErates, loadTrimmedReads, mergeRanges, meryl-import, meryl-lookup, mhapConvert, miniasm, minidot, mmapConvert, modeltest-ng, orthofinder, ovStoreBucketizer, ovStoreBuild, ovStoreConfig, ovStoreDump, ovStoreIndexer, ovStoreSorter, ovStoreStats, overlapAlign, overlapConvert, overlapImport, overlapInCore, overlapInCorePartition, overlapPair, pacbio_post_process, pal2nal.pl, pan_genome_assembly_statistics, pan_genome_core_alignment, pan_genome_post_analysis, pan_genome_reorder_spreadsheet, parallel_all_against_all_blastp, pgcgap, plot_3Dpie.R, prefixEditDistance-matchLimitGenerate, protein_alignment_from_nucleotides, query_pan_genome, raxml-ng, raxml-ng-mpi, roary, roary-create_pan_genome_plots.R, roary-pan_genome_reorder_spreadsheet, roary-query_pan_genome, roary-unique_genes_per_sample, run_gubbins.py, scoary, scoary_GUI, scriptlive, sequence, sickle, snippy, snippy-clean_full_aln, snippy-core, snippy-multi, snippy-vcf_extract_subs, snippy-vcf_report, snippy-vcf_to_tab, splitHaplotype, splitReads, sqStoreCreate, sqStoreDumpFASTQ, sqStoreDumpMetaData, tgStoreCompress, tgStoreDump, tgStoreFilter, tgStoreLoad, tgTigDisplay, transfer_annotation_to_groups, triangle2list.pl, trimReads, unicycler, unicycler_align, unicycler_check, unicycler_polish, unicycler_scrub, utgcns, vcf2scoary, vcfnormalizesvs, vcfnull2ref, vcfunphase, wtdbgConvert, yapp, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject
GITHUB quay.io/biocontainers/btyper3 shpc-registry automated BioContainers addition for btyper3 btyper3, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides
GITHUB quay.io/biocontainers/bubblegun singularity registry hpc automated addition for bubblegun BubbleGun, idle3.13, pydoc3.13, python3.13, python3.13-config
GITHUB quay.io/biocontainers/bucketcache shpc-registry automated BioContainers addition for bucketcache easy_install-2.7, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5
GITHUB quay.io/biocontainers/bufet shpc-registry automated BioContainers addition for bufet bufet.bin, bufet.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/bugseq-porechop shpc-registry automated BioContainers addition for bugseq-porechop porechop, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/buildh shpc-registry automated BioContainers addition for buildh buildH, gsd, nc3tonc4, nc4tonc3, ncinfo, numba, pycc, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy
GITHUB quay.io/biocontainers/bumbershoot shpc-registry automated BioContainers addition for bumbershoot adjustScanRankerScoreByGroup, directag, idpAssemble, idpQonvert, idpQuery, myrimatch, pepitome, quameter, tagrecon
GITHUB quay.io/biocontainers/burrito-fillings shpc-registry automated BioContainers addition for burrito-fillings iptest3, iptest, ipython3, ipython, natsort, qhelpconverter, qwebengine_convert_dict, pygmentize, canbusutil, qgltf
GITHUB quay.io/biocontainers/burrito shpc-registry automated BioContainers addition for burrito
GITHUB quay.io/biocontainers/burst shpc-registry automated BioContainers addition for burst bcov2-strip, burst_linux_DB12, burst_linux_DB15, lingenome, t2gg
GITHUB quay.io/biocontainers/busco shpc-registry automated BioContainers addition for busco busco, busco_configurator.py, find, generate_plot.py, hmmc2, hmmerfm-exactmatch, locate, run-sepp.sh, run_abundance.py, run_sepp.py, run_tipp.py, run_tipp_tool.py, run_upp.py, seppJsonMerger.jar, split_sequences.py, updatedb, xargs, augustus, bam2hints, etraining, fastBlockSearch, filterBam, homGeneMapping, joingenes, prepareAlign, guppy, pplacer
GITHUB quay.io/biocontainers/buscolite singularity registry hpc automated addition for buscolite PF00225_full.blocks.txt, PF00225_seed.blocks.txt, add_name_to_gff3.pl, aln2wig, augustify.py, buscolite, executeTestCGP.py, extractAnno.py, findRepetitiveProtSeqs.py, get_loci_from_gb.pl, miniprot, pp_simScore, rename_species.pl, stringtie2fa.py, bamToWig.py, compare_masking.pl, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, merge_masking.pl, aa2nonred.pl, cdbfasta, cdbyank, compileSpliceCands, computeFlankingRegion.pl, eval_multi_gtf.pl, filterGenesIn.pl, findGffNamesInFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, gtf2aa.pl, gth2gtf.pl, setStopCodonFreqs.pl, utrrnaseq, SplicedAlignment.pm, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl
GITHUB quay.io/biocontainers/bustools shpc-registry automated BioContainers addition for bustools bustools, mirror_server, mirror_server_stop, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy
GITHUB quay.io/biocontainers/bwa-aln-interactive singularity registry hpc automated addition for bwa-aln-interactive bwa-aln-interactive
GITHUB quay.io/biocontainers/bwa-mem2 shpc-registry automated BioContainers addition for bwa-mem2 bwa-mem2, bwa-mem2.avx, bwa-mem2.avx2, bwa-mem2.avx512bw, bwa-mem2.sse41, bwa-mem2.sse42
GITHUB quay.io/biocontainers/bwa-meme singularity registry hpc automated addition for bwa-meme build_rmis_dna.sh, bwa-meme, bwa-meme-train-prmi, bwa-meme_mode1, bwa-meme_mode1.avx, bwa-meme_mode1.avx2, bwa-meme_mode1.avx512bw, bwa-meme_mode1.sse41, bwa-meme_mode1.sse42, bwa-meme_mode2, bwa-meme_mode2.avx, bwa-meme_mode2.avx2, bwa-meme_mode2.avx512bw, bwa-meme_mode2.sse41, bwa-meme_mode2.sse42, bwa-meme_mode3.avx, bwa-meme_mode3.avx2, bwa-meme_mode3.avx512bw, bwa-meme_mode3.sse41, bwa-meme_mode3.sse42
GITHUB quay.io/biocontainers/bwa shpc-registry automated BioContainers addition for bwa bwa
GITHUB quay.io/biocontainers/bwakit shpc-registry automated BioContainers addition for bwakit bwa-postalt.js, fermi2, fermi2.pl, htsbox, ropebwt2, run-HLA, run-bwamem, run-gen-ref, samblaster, trimadap, typeHLA-selctg.js, typeHLA.js, typeHLA.sh, seqtk, perl5.32.0, k8, qualfa2fq.pl, xa2multi.pl, bwa, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl
GITHUB quay.io/biocontainers/bwameth shpc-registry automated BioContainers addition for bwameth bwameth.py, toolshed, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, bwa
GITHUB quay.io/biocontainers/bwapy shpc-registry automated BioContainers addition for bwapy bwamempy, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/bwise shpc-registry automated BioContainers addition for bwise bcalm, bgreat, btrim, bwise, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config, h5cc
GITHUB quay.io/biocontainers/bwread shpc-registry automated BioContainers addition for bwread tabulate, natsort, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config
GITHUB quay.io/biocontainers/bx-python shpc-registry automated BioContainers addition for bx-python
GITHUB quay.io/biocontainers/bxtools shpc-registry automated BioContainers addition for bxtools bxtools
GITHUB quay.io/biocontainers/byobu shpc-registry automated BioContainers addition for byobu
GITHUB quay.io/biocontainers/bzip2 shpc-registry automated BioContainers addition for bzip2 bzip2, bzip2recover
GITHUB quay.io/biocontainers/c-ares shpc-registry automated BioContainers addition for c-ares
GITHUB quay.io/biocontainers/c4counter singularity registry hpc automated addition for c4counter c4counter, sdust, paftools.js, minimap2, k8, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/cactus shpc-registry automated BioContainers addition for cactus 3EdgeTests, _toil_mesos_executor, _toil_worker, bedSort, bigBedToBed, blossom5, blossom_randGraph.py, cPecanAlign, cPecanEm, cPecanLastz, cPecanLastz_D, cPecanLibTests, cPecanModifyHmm, cPecanRealign, cactus, cactus2hal-stitch.sh, cactus2hal.py, cactusAPITests, cactus_addReferenceCoordinates, cactus_analyseAssembly, cactus_bar, cactus_barTests, cactus_batch_mergeChunks, cactus_blast_chunkFlowerSequences, cactus_blast_chunkSequences, cactus_blast_convertCoordinates, cactus_blast_sortAlignments, cactus_caf, cactus_calculateMappingQualities, cactus_check, cactus_convertAlignmentsToInternalNames, cactus_coverage, cactus_covered_intervals, cactus_fastaGenerator, cactus_fasta_fragments.py, cactus_fasta_softmask_intervals.py, cactus_fillAdjacencies, cactus_filterSmallFastaSequences.py, cactus_getReferenceSeq, cactus_halGenerator, cactus_halGeneratorTests, cactus_makeAlphaNumericHeaders.py, cactus_mirrorAndOrientAlignments, cactus_normalisation, cactus_phylogeny, cactus_preprocess, cactus_reference, cactus_secondaryDatabase, cactus_setup, cactus_splitAlignmentOverlaps, cactus_stripUniqueIDs, cactus_workflow_convertAlignmentCoordinates, cactus_workflow_extendFlowers, cactus_workflow_flowerStats, cactus_workflow_getFlowers, cwltest, cwltoil, dbTestScript, docker_test_script, findRegionsExclusivelyInGroup, galaxy-tool-test, hal2assemblyHub.py, hal2chain, hal2fasta, hal2maf, hal2mafMP.py, hal4dExtract, hal4dExtractTest, halAddToBranch, halAlignedExtract, halAlignmentDepth, halApiTests, halAppendCactusSubtree, halAppendSubtree, halBranchMutations, halChainTests, halCoverage, halExtract, halHdf5Tests, halIndels, halLiftover, halLiftoverTests, halLodExtract, halLodInterpolate.py, halMafTests, halMaskExtract, halRandGen, halRemoveGenome, halRenameGenomes, halRenameSequences, halReplaceGenome, halSetMetadata, halSingleCopyRegionsExtract, halSnps, halStats, halSummarizeMutations, halSynteny, halTestGen, halTreeMutations.py, halTreeNIBackground.py, halTreeNIConservation.py, halTreeNITurnover.py, halUpdateBranchLengths, halValidate, halWiggleLiftover, halWriteNucleotides, jobTreeKill, jobTreeRun, jobTreeStats, jobTreeStatus, jobTreeTest_Dependencies.py, kccachetest, kcdirmgr, kcdirtest, kcforestmgr, kcforesttest, kcgrasstest, kchashmgr, kchashtest, kclangctest, kcpolymgr, kcpolytest, kcprototest, kcstashtest, kctreemgr, kctreetest, kcutilmgr, kcutiltest, ktremotemgr, ktremotetest, ktserver, kttimedmgr, kttimedtest, ktutilmgr, ktutilserv, ktutiltest, maf2hal, matchGraph.py, matchingAndOrderingTests, mock-cwl-runner, mulled-build, mulled-build-channel, mulled-build-files, mulled-build-tool, mulled-search, multijob, mwmatching.py, referenceTests, scriptTreeTest_Sort.py, scriptTreeTest_Wrapper.py, scriptTreeTest_Wrapper2.py, sonLibTests, sonLib_cigarTest, sonLib_daemonize.py, sonLib_fastaCTest, sonLib_kvDatabaseTest, stCafTests, stPinchesAndCactiTests, toil, toil-cwl-runner, toil-wdl-runner, wsdump.py, cwltool, pyrsa-decrypt-bigfile, pyrsa-encrypt-bigfile, avro, schema-salad-doc, schema-salad-tool, bedToBigBed, faToTwoBit, asadmin, bundle_image
GITHUB quay.io/biocontainers/cadd-scripts shpc-registry automated BioContainers addition for cadd-scripts cadd-install.sh, cadd.sh, stone, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file
GITHUB quay.io/biocontainers/cafe shpc-registry automated BioContainers addition for cafe cafe5
GITHUB quay.io/biocontainers/cage shpc-registry automated BioContainers addition for cage bamdump, cage, cage-classify.py, bamtools, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/cagee singularity registry hpc automated addition for cagee cagee, diffmat_precalc, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics
GITHUB quay.io/biocontainers/calcs shpc-registry automated BioContainers addition for calcs calcs, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/calib shpc-registry automated BioContainers addition for calib calib, calib_cons
GITHUB quay.io/biocontainers/calisp singularity registry hpc automated addition for calisp calisp, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, f2py3.11, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, 2to3-3.11, idle3.11, pydoc3.11
GITHUB quay.io/biocontainers/calitas shpc-registry automated BioContainers addition for calitas calitas, appletviewer, idlj, orbd, schemagen, servertool, tnameserv, wsgen, wsimport, xjc, jaotc
GITHUB quay.io/biocontainers/callerpp singularity registry hpc automated addition for callerpp callerpp, spoa
GITHUB quay.io/biocontainers/callingcardstools singularity registry hpc automated addition for callingcardstools callingcardstools, dul-receive-pack, dul-upload-pack, dulwich, keyring, pkginfo, poetry, pyproject-build, python-build, virtualenv, doesitcache, jsonschema, dbus-cleanup-sockets, dbus-daemon, dbus-launch, dbus-monitor, dbus-run-session, dbus-send, dbus-test-tool, dbus-update-activation-environment, dbus-uuidgen, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/callstate shpc-registry automated BioContainers addition for callstate callstate, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/calour shpc-registry automated BioContainers addition for calour attr, balsam, esdcompat, getfattr, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, jupyter-dejavu, jupyter-execute, lprodump, lrelease-pro, lupdate-pro, meshdebug, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, send2trash, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set
GITHUB quay.io/biocontainers/cameo shpc-registry automated BioContainers addition for cameo cameo, grako, httpx, isympy, jupyter-dejavu, jupyter-execute, send2trash, cmark, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run, iptest3
GITHUB quay.io/biocontainers/cami-amber shpc-registry automated BioContainers addition for cami-amber amber.py, setup.py, version.py, bokeh, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.7, opj_compress, opj_decompress, opj_dump
GITHUB quay.io/biocontainers/cami-opal shpc-registry automated BioContainers addition for cami-opal opal.py, opal_stats.py, opal_workflow.py, setup.py, version.py, wsdump.py, dendropy-format, doesitcache, iptest3, bokeh, sumlabels.py, sumtrees.py, iptest, ipython3, ipython, cygdb
GITHUB quay.io/biocontainers/camlhmp singularity registry hpc automated addition for camlhmp archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, camlhmp, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, executor, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gbf2fsa, gbf2ref, gm2ranges, gm2segs, ini2xml, jsonl2xml, just-first-key, nhance.sh, pma2apa, pma2pme, pmc2bioc, pmc2info, quote-grouped-elements, ref2pmid, refseq-nm-cds, scn2xml, stream-local, test-pmc-index, toml2xml, yaml2xml, rich-click, blastn_vdb, tblastn_vdb, markdown-it, coloredlogs, test_pcre, humanfriendly, pigz, unpigz, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh
GITHUB quay.io/biocontainers/campyagainst singularity registry hpc automated addition for campyagainst campyagainst, fastANI, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config
GITHUB quay.io/biocontainers/campygstyper singularity registry hpc automated addition for campygstyper campygstyper, fastANI, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config
GITHUB quay.io/biocontainers/cancerit-allelecount shpc-registry automated BioContainers addition for cancerit-allelecount alleleCounter, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/cannoli shpc-registry automated BioContainers addition for cannoli beeline, beeline.cmd, cannoli-shell, cannoli-submit, csv-import, docker-image-tool.sh, elasticurl, elasticurl_cpp, elastipubsub, find-spark-home, find-spark-home.cmd, find_spark_home.py, load-spark-env.cmd, load-spark-env.sh, orc-memory, orc-scan, pyspark, pyspark.cmd, pyspark2.cmd, run-example, run-example.cmd, spark-class, spark-class.cmd, spark-class2.cmd, spark-shell, spark-shell.cmd, spark-shell2.cmd, spark-sql, spark-sql.cmd, spark-sql2.cmd, spark-submit, spark-submit.cmd, spark-submit2.cmd, sparkR, sparkR.cmd, sparkR2.cmd, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin
GITHUB quay.io/biocontainers/canopy singularity registry hpc automated addition for canopy cc.bin
GITHUB quay.io/biocontainers/cansam shpc-registry automated BioContainers addition for cansam samcat, samcount, samgroupbyname, samhead, samsort, samsplit
GITHUB quay.io/biocontainers/cansnper shpc-registry automated BioContainers addition for cansnper
GITHUB quay.io/biocontainers/cansnper2 shpc-registry automated BioContainers addition for cansnper2 CanSNPer2, CanSNPer2-database, CanSNPer2-download, CanSNPer2-test, flextaxd, flextaxd-create, progressiveMauve, ete3, compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util
GITHUB quay.io/biocontainers/canu shpc-registry automated BioContainers addition for canu alignGFA, bogart, canu, canu-time, canu.defaults, correctOverlaps, draw-tig, dumpBlob, edalign, errorEstimate, falconsense, filterCorrectionLayouts, filterCorrectionOverlaps, findErrors, findErrors-Dump, fixErrors, generateCorrectionLayouts, layoutReads, loadCorrectedReads, loadErates, loadTrimmedReads, mergeRanges, mhapConvert, mmapConvert, ovStoreBucketizer, ovStoreBuild, ovStoreConfig, ovStoreDump, ovStoreIndexer, ovStoreSorter, ovStoreStats, overlapAlign, overlapCheck, overlapConvert, overlapImport, overlapInCore, overlapInCorePartition, overlapPair, prefixEditDistance-matchLimitGenerate, splitHaplotype, splitReads, sqStoreCreate, sqStoreDumpFASTQ, sqStoreDumpMetaData, tgStoreCompress, tgStoreDump, tgStoreLoad, tgTigDisplay, trimReads, utgcns, meryl, chrpath, gnuplot, xkbcli, pg_config, sdust, qdistancefieldgenerator, qmlpreview, qvkgen, paftools.js
GITHUB quay.io/biocontainers/canvas shpc-registry automated BioContainers addition for canvas Canvas, EvaluateCNV
GITHUB quay.io/biocontainers/cap3 shpc-registry automated BioContainers addition for cap3 cap3, formcon
GITHUB quay.io/biocontainers/capc-map shpc-registry automated BioContainers addition for capc-map capC-MAP, capCdigestfastq, capClocation2fragment, capCmain, capCpair2bg, capCpileup2binned, cutadapt, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect
GITHUB quay.io/biocontainers/capcruncher shpc-registry automated BioContainers addition for capcruncher bq, capcruncher, csv-import, docker-credential-gcloud, fetchChromSizes, gcloud, ice, orc-memory, orc-scan, rich-click, time, timezone-dump, trim_galore, gsutil, multiqc, flash, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, cooler
GITHUB quay.io/biocontainers/caper shpc-registry automated BioContainers addition for caper autouri, aws, aws.cmd, aws_bash_completer, aws_completer, aws_zsh_completer.sh, caper, create_instance.sh, miniwdl, pygtail, pyhocon, run_mysql_server_docker.sh, run_mysql_server_singularity.sh, wsdump.py, pyrsa-decrypt-bigfile, pyrsa-encrypt-bigfile, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, coloredlogs, humanfriendly, jp.py, py.test
GITHUB quay.io/biocontainers/captus singularity registry hpc automated addition for captus Xcalcmem.sh, bloomfilterparser.sh, captus_assembly, clipkit, f2py3.11, falco, 2to3-3.11, idle3.11, kmutate.sh, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, pydoc3.11, python3.11, python3.11-config, runhmm.sh, megahit, megahit_toolkit, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, sketchblacklist2.sh, splitribo.sh, addssu.sh, adjusthomopolymers.sh, analyzeaccession.sh, analyzegenes.sh
GITHUB quay.io/biocontainers/card_trick shpc-registry automated BioContainers addition for card_trick card-trick, pronto, f2py3.8, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/carna shpc-registry automated BioContainers addition for carna LocARNA_RNAz.pm, RNAz.pm, all-interval, aln-seqs.pl, aln2fa.pl, alnsel.pl, alpha, average-dot.pl, bacp, bibd, bin-packing, black-hole, car-sequencing, carna, carna.pl, cartesian-heart, colored-matrix, crew, crossword, crowded-chess, descartes-folium, dominating-queens, domino, donald, dot2pp, efpa, eq20, exparna_p, exploc_p, fzn-gecode, gen-reliab-dot.pl, golf, golomb-ruler, graph-color, grocery, hamming, ind-set, kakuro, knights, langford-number, locarna, locarna-mea.pl, locarna-motif-scan, locarna_deviation, locarna_p, locarna_rnafold_pp, locarnap-predict-and-plot.pl, locarnap-realign-all.pl, locarnap-revcomp.pl, locarnap-revisit-RNAz-hits.pl, locarnap_fit, locarnate, magic-sequence, magic-square, minesweeper, mlocarna, mlocarna_nnames, money, multi-bin-packing, mzn-gecode, nonogram, open-shop, ortho-latin, partition, pentominoes, perfect-square, photo, plot-bmprobs, pp2dot, qcp, queen-armies, queens, radiotherapy, reliability-profile.pl, ribosum2cc, sat, schurs-lemma, sparse, sports-league, steel-mill, steiner, sudoku, tsp, warehouses, word-square, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex
GITHUB quay.io/biocontainers/carnac-lr shpc-registry automated BioContainers addition for carnac-lr CARNAC-LR, CARNAC_to_fasta, CARNAC_to_fasta.py, paf_to_CARNAC.py, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/carpedeam singularity registry hpc automated addition for carpedeam carpedeam, gawk-5.3.0, gawkbug, awk, gawk
GITHUB quay.io/biocontainers/cartools singularity registry hpc automated addition for cartools CARTools.py, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim, wgsim_eval.pl, samtools, 2to3-3.10, idle3.10, pydoc3.10
GITHUB quay.io/biocontainers/carveme singularity registry hpc automated addition for carveme acpl, amk_ccc, amk_fft2, amk_grf, amk_hy, amk_m2, amk_p2, atst, benchmark, build_universe, carve, curate_universe, dltest, gapfill, gbase, gcv, gmk_hy, gmk_m2, gmk_m3, gmk_msh, gmk_ub2, gmtst, gord, gotst, gscat, gtst, ipopt, ipopt_sens, isql, iusql, mcv, merge_community, mmk_m2, mmk_m3, mord, mtst, odbc_config, odbcinst, perl5.22.2, scip, slencheck, tableproxy64, gmap, blastn_vdb, tblastn_vdb, isympy, uuid, uuid-config, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis
GITHUB quay.io/biocontainers/cas-offinder shpc-registry automated BioContainers addition for cas-offinder bugpoint, c-index-test, cas-offinder, ccmake, clang, clang++, clang-5.0, clang-check, clang-cl, clang-cpp, clang-format, clang-import-test, clang-offload-bundler, clang-rename, cmake, cpack, ctest, ed2k-link, git-clang-format, gost-hash, has160-hash, hwloc-annotate, hwloc-assembler, hwloc-assembler-remote, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distances, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, llc, lli, llvm-ar, llvm-as, llvm-bcanalyzer, llvm-c-test, llvm-cat, llvm-config, llvm-cov, llvm-cvtres, llvm-cxxdump, llvm-cxxfilt, llvm-diff, llvm-dis, llvm-dlltool, llvm-dsymutil, llvm-dwarfdump, llvm-dwp, llvm-extract, llvm-lib, llvm-link, llvm-lto, llvm-lto2, llvm-mc, llvm-mcmarkup, llvm-modextract, llvm-mt, llvm-nm, llvm-objdump, llvm-opt-report, llvm-pdbutil, llvm-profdata, llvm-ranlib, llvm-readelf, llvm-readobj, llvm-rtdyld, llvm-size, llvm-split, llvm-stress, llvm-strings, llvm-symbolizer, llvm-tblgen, llvm-xray, lstopo, lstopo-no-graphics, magnet-link, obj2yaml, opt, poclcc, rhash, sancov, sanstats, scan-build, scan-view, sfv-hash, tiger-hash, tth-hash, verify-uselistorder, whirlpool-hash, yaml2obj, libtoolize, libtool, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/cascade-config singularity registry hpc automated addition for cascade-config 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, jsonschema, python3.1
GITHUB quay.io/biocontainers/cassiopee shpc-registry automated BioContainers addition for cassiopee cassiopee, cassiopeeknife, gflags_completions.sh, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/cassiopeia singularity registry hpc automated addition for cassiopeia cassiopeia-preprocess, ccphylo, itol, itolexport, pandoc-lua, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, shortuuid, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, jupyter-execute, jupyter-dejavu, mpg123, mpg123-id3dump, mpg123-strip, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, mpicalc, yat2m, pandoc-server, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, balsam, lprodump
GITHUB quay.io/biocontainers/cassis shpc-registry automated BioContainers addition for cassis cassis, lastz, lastz_32, lastz_D, perl5.32.0, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500, gslj, gslp, gsnd
GITHUB quay.io/biocontainers/cat shpc-registry automated BioContainers addition for cat CAT, bzcat, lz4cat, lzcat, xzcat, zstdcat, diamond, prodigal, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/catch shpc-registry automated BioContainers addition for catch analyze_probe_coverage.py, design.py, design_large.py, design_naively.py, pool.py, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/catch_chimera shpc-registry automated BioContainers addition for catch_chimera CATCh_v1.run, perl5.32.1, streamzip
GITHUB quay.io/biocontainers/catfasta2phyml singularity registry hpc automated addition for catfasta2phyml catfasta2phyml
GITHUB quay.io/biocontainers/cath-tools shpc-registry automated BioContainers addition for cath-tools cath-assign-domains, cath-cluster, cath-map-clusters, cath-refine-align, cath-resolve-hits, cath-score-align, cath-ssap, cath-superpose
GITHUB quay.io/biocontainers/cawlign singularity registry hpc automated addition for cawlign cawlign, shmemrun, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun, shmemcc, shmemfort, aggregate_profile.pl, profile2mat.pl, ompi-clean, ompi-server, orte-clean, orte-info, orte-server, ortecc, orted, orterun, mpiCC, ompi_info
GITHUB quay.io/biocontainers/cayman singularity registry hpc automated addition for cayman cayman, numpy-config, qualfa2fq.pl, xa2multi.pl, bwa, minimap2, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/cazy_webscraper shpc-registry automated BioContainers addition for cazy_webscraper cazy_webscraper, cw_extract_db_seqs, cw_get_genbank_seqs, cw_get_genomics, cw_get_gtdb_taxs, cw_get_ncbi_taxs, cw_get_pdb_structures, cw_get_uniprot_data, cw_query_database, xml2-config.bak, normalizer, tqdm, xslt-config, xsltproc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1
GITHUB quay.io/biocontainers/cblaster shpc-registry automated BioContainers addition for cblaster cblaster, clinker, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, diamond, faidx, normalizer, chardetect, f2py3.9
GITHUB quay.io/biocontainers/ccat shpc-registry automated BioContainers addition for ccat CCAT
GITHUB quay.io/biocontainers/ccmetagen shpc-registry automated BioContainers addition for ccmetagen CCMetagen.py, CCMetagen_extract_seqs.py, CCMetagen_merge.py, kma, kma_index, kma_shm, kma_update, ktClassifyBLAST, ktGetContigMagnitudes, ktGetLCA, ktGetLibPath, ktGetTaxIDFromAcc, ktGetTaxInfo, ktImportBLAST, ktImportDiskUsage, ktImportEC, ktImportFCP
GITHUB quay.io/biocontainers/ccne singularity registry hpc automated addition for ccne alignmentSieve, bamCompare, bamCoverage, bamPEFragmentSize, bigwigCompare, ccne-acc, ccne-fast, computeGCBias, computeMatrix, computeMatrixOperations, correctGCBias, deeptools, estimateReadFiltering, estimateScaleFactor, hts_AdapterTrimmer, hts_CutTrim, hts_LengthFilter, hts_NTrimmer, hts_Overlapper, hts_PolyATTrim, hts_Primers, hts_QWindowTrim, hts_SeqScreener, hts_Stats, hts_SuperDeduper, multiBamSummary, multiBigwigSummary, plotCorrelation, plotCoverage, plotEnrichment, plotFingerprint, plotHeatmap, plotPCA, plotProfile, faToTwoBit, my_print_defaults, mysql_config, perror, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl, sort-table, spdi2tbl
GITHUB quay.io/biocontainers/ccphylo singularity registry hpc automated addition for ccphylo ccphylo
GITHUB quay.io/biocontainers/ccsmeth singularity registry hpc automated addition for ccsmeth ccs, ccs-alt, ccsmeth, pbmm2, torchrun, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, tqdm, futurize, pasteurize, fasta-sanitize.pl, shiftBed, plot-ampliconstats, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed
GITHUB quay.io/biocontainers/cctk singularity registry hpc automated addition for cctk cctk, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, minced, dendropy-format, jpackage, sumlabels.py, sumtrees.py, cups-config, ippeveprinter, ipptool, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh
GITHUB quay.io/biocontainers/cd-hit-auxtools shpc-registry automated BioContainers addition for cd-hit-auxtools cd-hit-dup, cd-hit-lap, read-linker
GITHUB quay.io/biocontainers/cd-hit shpc-registry automated BioContainers addition for cd-hit
GITHUB quay.io/biocontainers/cdbtools shpc-registry automated BioContainers addition for cdbtools cdbfasta, cdbyank
GITHUB quay.io/biocontainers/cdhit-reader singularity registry hpc automated addition for cdhit-reader cdhit-compare, cdhit-parser, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div, cd-hit-div.pl, cd-hit-est-2d, cd-hit-para.pl, clstr2tree.pl, clstr2txt.pl, clstr2xml.pl, clstr_cut.pl, clstr_merge.pl, clstr_merge_noorder.pl, clstr_quality_eval.pl, clstr_quality_eval_by_link.pl, clstr_reduce.pl, clstr_renumber.pl, clstr_rep.pl, clstr_reps_faa_rev.pl, clstr_rev.pl
GITHUB quay.io/biocontainers/cdk-inchi-to-svg shpc-registry automated BioContainers addition for cdk-inchi-to-svg cdk-inchi-to-svg, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/cdna_cupcake shpc-registry automated BioContainers addition for cdna_cupcake BED.py, BioReaders.py, MPileUpVariantCaller.py, MummerSNPReader.py, SAMMPileUpReader.py, STAR.py, STARwrapper.py, SeqReaders.py, SeqSplitter.py, UMI_BC_error_correct.py, VariantPhaseCleaner.py, VariantPhaser.py, alignment_stats_from_sam.py, calc_expected_accuracy_from_fastq.py, calc_probe_hit_from_sam.py, chain_fusion_samples.py, chain_samples.py, clip_out_UMI_cellBC.py, collapse_isoforms_by_sam.py, collate_FLNC_gene_info.py, coordinate_mapper.py, create_fake_genome.py, dedup_FLNC_per_cluster.py, demux_by_barcode_for_subsampling.py, demux_by_barcode_groups.py, demux_isoseq2_no_genome.py, demux_isoseq_no_genome.py, demux_isoseq_with_genome.py, err_correct_w_genome.py, fa2fq.py, filter_away_subset.py, filter_by_count.py, filter_lq_isoforms.py, fq2fa.py, fusion_finder.py, get_abundance_post_collapse.py, get_seq_stats.py, get_seqs_from_list.py, group_ORF_sequences.py, ice_pbdagcon2.py, make_file_for_subsampling_from_collapsed.py, match_w_annotation.py, parse_matchAnnot.py, picking_up_ice2.py, randomly_select_sequences.py, revcomp.py, run_IceArrow2.py, run_IceInit2.py, run_IceIterative2.py, run_IcePartial2.py, run_phaser.py, run_preCluster.py, sam_to_bam.py, sam_to_collapsed_gff.py, sam_to_gff3.py, scrub_sample_GFF_junctions.py, simulate.py, simulate_phasing_data_from_fasta.py, snps_to_vcf.py, subsample.py, subsample_with_category.py, summarize_gmap_sam.py, summarize_sample_GFF_junctions.py, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py
GITHUB quay.io/biocontainers/cdo shpc-registry automated BioContainers addition for cdo bufr_compare, bufr_compare_dir, bufr_copy, bufr_count, bufr_dump, bufr_filter, bufr_get, bufr_index_build, bufr_ls, bufr_set, cdo, codes_bufr_filter, codes_count, codes_info, codes_parser, codes_split_file, grib2ppm, grib_compare, grib_copy, grib_count, grib_dump, grib_filter, grib_get, grib_get_data, grib_histogram, grib_index_build, grib_ls, grib_merge, grib_set, grib_to_netcdf, gts_compare, gts_copy, gts_count, gts_dump, gts_filter, gts_get, gts_ls, imgcmp, imginfo, jasper, jiv, metar_compare, metar_copy, metar_dump, metar_filter, metar_get, metar_ls, tigge_check, aec, uuid, uuid-config, projsync, udunits2, invgeod, invproj, projinfo, cct, gie
GITHUB quay.io/biocontainers/cdskit singularity registry hpc automated addition for cdskit cdskit, idle3.13, pydoc3.13, python3.13, python3.13-config
GITHUB quay.io/biocontainers/ceas shpc-registry automated BioContainers addition for ceas build_genomeBG, ceas, gca, sitepro, my_print_defaults, mysql_config, perror, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/cell-types-analysis shpc-registry automated BioContainers addition for cell-types-analysis bats, build_cell_ontology_dict.R, cell_types_utils.R, check_labels.R, combine_tool_outputs.R, downsample_cells.R, get_consensus_output.R, get_empirical_dist.R, get_tool_performance_table.R, get_tool_pvals.R, label_analysis_run_post_install_tests.bats, label_analysis_run_post_install_tests.sh, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/cell2cell singularity registry hpc automated addition for cell2cell gseapy, runxlrd.py, h5tools_test_utils, scanpy, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, h5delete, numba, natsort, f2py3.8, tqdm, fonttools, pyftmerge
GITHUB quay.io/biocontainers/cellbender singularity registry hpc automated addition for cellbender cellbender, jupyter-contrib, jupyter-contrib-nbextension, jupyter-nbclassic, jupyter-nbclassic-bundlerextension, jupyter-nbclassic-extension, jupyter-nbclassic-serverextension, jupyter-nbextensions_configurator, jupyter-server, loompy, matplotlib, qtpy, jupyter-console, wsdump, jupyter-qtconsole, jupyter-execute, jupyter-dejavu, send2trash, torchrun, ninja, jupyter-bundlerextension, jupyter-nbextension, jupyter-serverextension, convert-caffe2-to-onnx, convert-onnx-to-caffe2, jupyter-notebook, jupyter-nbconvert, iptest3, jupyter-kernel, jupyter-kernelspec, jupyter-run, iptest, curve_keygen, pt2to3, ptdump, ptrepack, pttree
GITHUB quay.io/biocontainers/cellpose singularity registry hpc automated addition for cellpose androiddeployqt6, asn1Coding, asn1Decoding, asn1Parser, assistant6, cellpose, cllayerinfo, designer6, exr2aces, exrenvmap, exrheader, exrinfo, exrmakepreview, exrmaketiled, exrmultipart, exrmultiview, exrstdattr, ffmpeg, ffprobe, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, h264dec, h264enc, imgcmp, imginfo, jasper, jiv, linguist6, opencv_annotation, opencv_interactive-calibration, opencv_model_diagnostics, opencv_version, opencv_visualisation, opencv_waldboost_detector, p11-kit, p11tool, pixeltool6, protoc-25.3.0, qdbus6, qdbusviewer6, qdistancefieldgenerator6, qdoc6, qmake6, qml6, qmleasing6, qmlls6, qmlpreview6, qmlscene6, qt6.conf, qtdiag6, qtplugininfo6, qtpy, rav1e, roifile, setup_vars_opencv4.sh, torch_shm_manager, trust, vpxdec, vpxenc, x264, x265, SvtAv1DecApp, SvtAv1EncApp, dav1d, tiff2fsspec, aomdec, aomenc, dask, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, imageio_download_bin, imageio_remove_bin, skivi, h5tools_test_utils, mpg123, mpg123-id3dump, mpg123-strip
GITHUB quay.io/biocontainers/cellprofiler-core shpc-registry automated BioContainers addition for cellprofiler-core aomdec, aomenc, dav1d, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng
GITHUB quay.io/biocontainers/cellprofiler shpc-registry automated BioContainers addition for cellprofiler
GITHUB quay.io/biocontainers/cellqc singularity registry hpc automated addition for cellqc cellqc, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, stone, aec, plac_runner.py, yte, scanpy, docutils, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, geosop, cmark, pulptest, cbc, clp, geos-config, snakemake, snakemake-bash-completion, jp.py, tabulate, numba, pycc
GITHUB quay.io/biocontainers/cellrank-krylov shpc-registry automated BioContainers addition for cellrank-krylov acpl, amk_ccc, amk_fft2, amk_grf, amk_hy, amk_m2, amk_p2, atst, dggath, dgmap, dgord, dgpart, dgscat, dgtst, dunamai, gbase, gcv, gmk_hy, gmk_m2, gmk_m3, gmk_msh, gmk_ub2, gmtst, gord, gotst, gout, gpart, gscat, gtst, loompy, mcv, mmk_m2, mmk_m3, mord, mtest, mtst, parmetis, pddrive, pddrive_spawn, pometis, ptest, scotch_esmumps, gmap, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, scanpy, oshCC
GITHUB quay.io/biocontainers/cellrank shpc-registry automated BioContainers addition for cellrank
GITHUB quay.io/biocontainers/cellsnake singularity registry hpc automated addition for cellsnake ccmake, cellsnake, celltypist, cmake, cpack, ctest, ed2k-link, edonr256-hash, edonr512-hash, gost12-256-hash, gost12-512-hash, has160-hash, kaleido, magnet-link, mathjax-path, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, rhash, sfv-hash, tiger-hash, tth-hash, whirlpool-hash, kraken2, kraken2-build, kraken2-inspect, markdown-it, pg_amcheck, rsync-ssl, rsync, hwloc-gather-cpuid, pdfsig, xxh128sum, xxh32sum, xxh64sum, gdal_create, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo
GITHUB quay.io/biocontainers/cellsnp-lite shpc-registry automated BioContainers addition for cellsnp-lite cellsnp-lite, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/celltypist shpc-registry automated BioContainers addition for celltypist celltypist, scanpy, docutils, igraph, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, cmpfillin, gpmetis
GITHUB quay.io/biocontainers/cellxgene shpc-registry automated BioContainers addition for cellxgene cellxgene, gunicorn, flask, jp.py, numba, pycc, natsort, normalizer, f2py3.10, h5clear, h5format_convert, h5watch
GITHUB quay.io/biocontainers/cenote-taker3 singularity registry hpc automated addition for cenote-taker3 MitoHighConfidenceFilter, a3m_database_extract, a3m_database_filter, a3m_database_reduce, a3m_extract, a3m_reduce, annot-tsv, archspec, cenote_main.sh, cenotetaker3, cstranslate, dummy_template.sbt, ffindex_apply, ffindex_build, ffindex_from_fasta, ffindex_from_fasta_with_split, ffindex_get, ffindex_modify, ffindex_order, ffindex_reduce, ffindex_unpack, find, gawk-5.3.0, gawkbug, get_ct3_dbs, hhalign, hhalign_omp, hhblits, hhblits_ca3m, hhblits_omp, hhconsensus, hhfilter, hhmake, hhsearch, hhsearch_omp, locate, phanotate.py, pyrodigal, pyrodigal-gv, updatedb, xargs, tbl2asn-test, EukHighConfidenceFilter, aria2c, covels-SE, coves-SE, eufindtRNA, fasta2gsi, sstofa, tRNAscan-SE, tRNAscan-SE.conf, trnascan-1.4, fix-sqn-date, egrep, faketime, fgrep, grep, real-tbl2asn, seqkit, tbl2asn, idn, mmseqs, cmalign, cmbuild, cmcalibrate, cmconvert
GITHUB quay.io/biocontainers/centreseq shpc-registry automated BioContainers addition for centreseq
GITHUB quay.io/biocontainers/centrifuge-core shpc-registry automated BioContainers addition for centrifuge-core centrifuge, centrifuge-BuildSharedSequence.pl, centrifuge-RemoveEmptySequence.pl, centrifuge-RemoveN.pl, centrifuge-build, centrifuge-build-bin, centrifuge-class, centrifuge-compress.pl, centrifuge-download, centrifuge-inspect, centrifuge-inspect-bin, centrifuge-kreport, centrifuge-sort-nt.pl, tar, idn2, wget, perl5.32.1, streamzip
GITHUB quay.io/biocontainers/centrifuge shpc-registry automated BioContainers addition for centrifuge
GITHUB quay.io/biocontainers/centrifuger singularity registry hpc automated addition for centrifuger centrifuger, centrifuger-build, centrifuger-download, centrifuger-inspect, centrifuger-kreport, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tar, idn2, wget
GITHUB quay.io/biocontainers/centroid_rna_package shpc-registry automated BioContainers addition for centroid_rna_package centroid_alifold, centroid_fold, centroid_homfold, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold
GITHUB quay.io/biocontainers/centrosome shpc-registry automated BioContainers addition for centrosome aomdec, aomenc, dav1d, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng
GITHUB quay.io/biocontainers/cesar singularity registry hpc automated addition for cesar cesar
GITHUB quay.io/biocontainers/cesm shpc-registry automated BioContainers addition for cesm addr2line, apr-1-config, apu-1-config, ar, as, c++filt, ccmake, cmake, cpack, create_clone, create_newcase, create_test, ctest, dirmngr, dirmngr-client, dumpsexp, dwp, ed2k-link, edonr256-hash, edonr512-hash, elfedit, gold, gost12-256-hash, gost12-512-hash, gpg, gpg-agent, gpg-card, gpg-connect-agent, gpg-error, gpg-error-config, gpg-wks-client, gpg-wks-server, gpgconf, gpgparsemail, gpgrt-config, gpgscm, gpgsm, gpgsplit, gpgtar, gpgv, gprof, h5pcc, h5perf, h5pfc, has160-hash, hmac256, kbxutil, ksba-config, ld, ld.bfd, ld.gold, libassuan-config, libgcrypt-config, magnet-link, mpicalc, nf-config, nm, npth-config, ntbtls-config, objcopy, objdump, ph5diff, query_config, query_testlists, ranlib, readelf, rhash, sfv-hash, size, strings, strip, svn, svnadmin, svnbench, svndumpfilter, svnfsfs, svnlook, svnmucc, svnrdump, svnserve, svnsync, svnversion, tcsh, tiger-hash, tth-hash, watchgnupg, whirlpool-hash, yat2m, mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, db_convert, mpifort, mpic++
GITHUB quay.io/biocontainers/cgat-apps shpc-registry automated BioContainers addition for cgat-apps bq, cgat, docker-credential-gcloud, gcloud, time, gsutil, egrep, fgrep, grep, wigToBigWig, bedGraphToBigWig, bedToBigBed, basenc, b2sum, base32
GITHUB quay.io/biocontainers/cgat-core shpc-registry automated BioContainers addition for cgat-core time, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown
GITHUB quay.io/biocontainers/cgat-daisy shpc-registry automated BioContainers addition for cgat-daisy bq, daisy, docker-credential-gcloud, gcloud, time, gsutil, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod
GITHUB quay.io/biocontainers/cgat-pipelines-nosetests shpc-registry automated BioContainers addition for cgat-pipelines-nosetests cgatreport-build, cgatreport-clean, cgatreport-get, cgatreport-profile, cgatreport-quickstart, cgatreport-serve, cgatreport-test, innochecksum, msql2mysql, myisam_ftdump, myisamchk, myisamlog, myisampack, mysql, mysql_client_test, mysql_convert_table_format, mysql_find_rows, mysql_fix_extensions, mysql_plugin, mysql_secure_installation, mysql_setpermission, mysql_tzinfo_to_sql, mysql_upgrade, mysql_waitpid, mysql_zap, mysqlaccess, mysqlaccess.conf, mysqladmin, mysqlbinlog, mysqlbug, mysqlcheck, mysqld, mysqld_multi, mysqld_safe, mysqldump, mysqldumpslow, mysqlhotcopy, mysqlimport, mysqlshow, mysqlslap, mysqltest, pep8, replace, resolve_stack_dump, resolveip, transformseq, weblogo, wigToBigWig, bedGraphToBigWig, bedToBigBed, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot
GITHUB quay.io/biocontainers/cgat-report shpc-registry automated BioContainers addition for cgat-report cgatreport-build, cgatreport-clean, cgatreport-get, cgatreport-profile, cgatreport-quickstart, cgatreport-serve, cgatreport-test, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, nosetests, pybabel, bokeh, rst2html4.py, rst2html5.py, rst2html.py
GITHUB quay.io/biocontainers/cgat-scripts-nosetests shpc-registry automated BioContainers addition for cgat-scripts-nosetests innochecksum, msql2mysql, myisam_ftdump, myisamchk, myisamlog, myisampack, mysql, mysql_client_test, mysql_convert_table_format, mysql_find_rows, mysql_fix_extensions, mysql_plugin, mysql_secure_installation, mysql_setpermission, mysql_tzinfo_to_sql, mysql_upgrade, mysql_waitpid, mysql_zap, mysqlaccess, mysqlaccess.conf, mysqladmin, mysqlbinlog, mysqlbug, mysqlcheck, mysqld, mysqld_multi, mysqld_safe, mysqldump, mysqldumpslow, mysqlhotcopy, mysqlimport, mysqlshow, mysqlslap, mysqltest, pep8, replace, resolve_stack_dump, resolveip, transformseq, weblogo, wigToBigWig, bedGraphToBigWig, bedToBigBed, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot
GITHUB quay.io/biocontainers/cgat-scripts shpc-registry automated BioContainers addition for cgat-scripts
GITHUB quay.io/biocontainers/cgatcore shpc-registry automated BioContainers addition for cgatcore bq, docker-credential-gcloud, gcloud, time, gsutil, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod
GITHUB quay.io/biocontainers/cgcloud-lib shpc-registry automated BioContainers addition for cgcloud-lib asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier
GITHUB quay.io/biocontainers/cgecore shpc-registry automated BioContainers addition for cgecore f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/cgelib singularity registry hpc automated addition for cgelib 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config
GITHUB quay.io/biocontainers/cgmlst-dists shpc-registry automated BioContainers addition for cgmlst-dists cgmlst-dists
GITHUB quay.io/biocontainers/cgpbigwig shpc-registry automated BioContainers addition for cgpbigwig asn1Coding, asn1Decoding, asn1Parser, bam2bw, bam2bwbases, bg2bw, bwcat, bwjoin, detectExtremeDepth, p11-kit, p11tool, trust, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv, psktool
GITHUB quay.io/biocontainers/cgranges singularity registry hpc automated addition for cgranges 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/cgt singularity registry hpc automated addition for cgt cgt_bacpop
GITHUB quay.io/biocontainers/cgview shpc-registry automated BioContainers addition for cgview cgview, cgview_xml_builder.pl, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml, basemlg, chi2, codeml, evolver, infinitesites
GITHUB quay.io/biocontainers/chado-tools shpc-registry automated BioContainers addition for chado-tools chado, pronto, gffutils-cli, activate-global-python-argcomplete, pybabel, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, faidx, pg_config, 2to3-3.6, idle3.6
GITHUB quay.io/biocontainers/chain2paf singularity registry hpc automated addition for chain2paf chain2paf
GITHUB quay.io/biocontainers/chainmap shpc-registry automated BioContainers addition for chainmap 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/changeo shpc-registry automated BioContainers addition for changeo AlignRecords.py, AlignSets.py, AssemblePairs.py, AssignGenes.py, BuildConsensus.py, BuildTrees.py, ClusterSets.py, CollapseSeq.py, ConvertDb.py, ConvertHeaders.py, CreateGermlines.py, DefineClones.py, EstimateError.py, FilterSeq.py, MakeDb.py, MaskPrimers.py, PairSeq.py, ParseDb.py, ParseHeaders.py, ParseLog.py, SplitSeq.py, UnifyHeaders.py, airr-tools, filter-table, spdi2prod, vsearch, muscle, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh
GITHUB quay.io/biocontainers/chanjo shpc-registry automated BioContainers addition for chanjo chanjo, varfilter.py, sambamba, easy_install-2.7, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, python2, python2.7, idle, python-config
GITHUB quay.io/biocontainers/chap shpc-registry automated BioContainers addition for chap GMXRC, GMXRC.bash, GMXRC.csh, GMXRC.zsh, GenX_IR, chap, demux.pl, gmx, gmx-completion-gmx.bash, gmx-completion.bash, hwloc-annotate, hwloc-assembler, hwloc-assembler-remote, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distances, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, iga64, llvm-spirv, lstopo, lstopo-no-graphics, ocloc, xplor2gmx.pl, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/check-sort-order shpc-registry automated BioContainers addition for check-sort-order check-sort-order
GITHUB quay.io/biocontainers/checkatlas singularity registry hpc automated addition for checkatlas checkatlas, checkatlas-workflow, dul-receive-pack, dul-upload-pack, dulwich, h5fuse.sh, keyring, pkginfo, poetry, pyproject-build, python-build, rocm-smi, virtualenv, h5delete, scanpy, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, doesitcache, aec, pycc, hb-info, numba, natsort, tjbench, jsonschema, dbus-cleanup-sockets
GITHUB quay.io/biocontainers/checkm-genome shpc-registry automated BioContainers addition for checkm-genome checkm, rppr, guppy, pplacer, dendropy-format, sumlabels.py, sumtrees.py, prodigal, hmmpgmd_shard, easel, esl-mixdchlet
GITHUB quay.io/biocontainers/checkm2 singularity registry hpc automated addition for checkm2 checkm2, import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, diamond, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, markdown_py, prodigal, protoc
GITHUB quay.io/biocontainers/checkqc shpc-registry automated BioContainers addition for checkqc checkqc, checkqc-ws, interop_aggregate, interop_dumpbin, interop_dumptext, interop_imaging_table, interop_index-summary, interop_plot_by_cycle, interop_plot_by_lane, interop_plot_flowcell, interop_plot_qscore_heatmap, interop_plot_qscore_histogram, interop_plot_sample_qc, interop_summary, sample-sheet, tabulate, normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/checkv shpc-registry automated BioContainers addition for checkv checkv, prodigal-gv, diamond, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev
GITHUB quay.io/biocontainers/chembl_structure_pipeline shpc-registry automated BioContainers addition for chembl_structure_pipeline f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc, tificc
GITHUB quay.io/biocontainers/chembl_webresource_client shpc-registry automated BioContainers addition for chembl_webresource_client chembl_act, chembl_ids, chembl_m2t, chembl_sim, chembl_sub, chembl_t2m, chardetect, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv
GITHUB quay.io/biocontainers/chemfp shpc-registry automated BioContainers addition for chemfp fpcat, ob2fps, obfitall, obmm, oe2fps, rdkit2fps, sdf2fps, simsearch, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop
GITHUB quay.io/biocontainers/chewbbaca shpc-registry automated BioContainers addition for chewbbaca chewBBACA.py, chewie, clustalw, CA.pm, cacert.pem, clustalw2, index-themes, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi
GITHUB quay.io/biocontainers/chewiesnake shpc-registry automated BioContainers addition for chewiesnake Clustering_DistanceMatrix.R, alleleprofile_hasher.py, chewBBACA.py, chewie, chewiesnake, chewiesnake_join, create_alleledbSheet.sh, create_sampleSheet.sh, grapetree, hashID.py, lighter, shovill, skesa, stone, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, fastp, flash, megahit, megahit_toolkit, pilon, unidecode
GITHUB quay.io/biocontainers/chexalign shpc-registry automated BioContainers addition for chexalign chexalign, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/chexmix shpc-registry automated BioContainers addition for chexmix centrimo-plots, chexmix, dtc, fasta-from-bed, fasta-holdout-set, fasta-re-match, index-fasta-file, meme-chip_html_to_tsv, momo, sea, streme, streme_xml_to_html, tgene, xstreme, xstreme_html_to_tsv, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip
GITHUB quay.io/biocontainers/chia-rep shpc-registry automated BioContainers addition for chia-rep f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv
GITHUB quay.io/biocontainers/chicagotools shpc-registry automated BioContainers addition for chicagotools bam2chicago.sh, fitDistCurve.R, makeDesignFiles.py, makeNBaitsPerBinFile.py, makeNPerBinFile.py, makePeakMatrix.R, makeProxOEFile.py, runChicago.R, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, c89, c99
GITHUB quay.io/biocontainers/chip-r singularity registry hpc automated addition for chip-r ChIP-R, chipr, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/chips shpc-registry automated BioContainers addition for chips chips, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/chipseq-greylist shpc-registry automated BioContainers addition for chipseq-greylist chipseq-greylist, ldc-build-runtime, ldc-profdata, ldc-prune-cache, ldc2, ldmd2, sambamba, f2py3.8, htsfile, bgzip, tabix, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/chira shpc-registry automated BioContainers addition for chira CopomuS.py, IntaRNA, IntaRNA1, IntaRNA2, IntaRNA3, IntaRNA_CSV_p-value.R, IntaRNA_plotRegions.R, IntaRNAduplex, IntaRNAens, IntaRNAexact, IntaRNAhelix, IntaRNAsTar, IntaRNAseed, blockbuster.x, chira_collapse.py, chira_extract.py, chira_map.py, chira_merge.py, chira_quantify.py, chira_utilities.py, clan_annotate, clan_index, clan_output, clan_search, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold
GITHUB quay.io/biocontainers/chiron shpc-registry automated BioContainers addition for chiron chiron, unit2, minimap2.py, freeze_graph, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, markdown_py, protoc
GITHUB quay.io/biocontainers/chisel shpc-registry automated BioContainers addition for chisel aln2bed.pl, art_454, art_SOLiD, art_illumina, art_profiler_454, art_profiler_illumina, chisel, chisel_bedding, chisel_calling, chisel_cloning, chisel_nonormal, chisel_plotting, chisel_prep, chisel_pseudonormal, chisel_rdr, combinedAvg.pl, empDist.pl, fastqReadAvg.pl, map2bed.pl, summation.pl, gff2gff.py, gawk-5.1.0, awk, gawk, qualfa2fq.pl, xa2multi.pl, bwa, guess-ploidy.py, plot-roh.py, run-roh.pl
GITHUB quay.io/biocontainers/chiton singularity registry hpc automated addition for chiton tqdm, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/chopin2 singularity registry hpc automated addition for chopin2 beeline, beeline.cmd, chopin2, csv-import, docker-image-tool.sh, elasticurl, elasticurl_cpp, elastipubsub, find-spark-home, find-spark-home.cmd, find_spark_home.py, load-spark-env.cmd, load-spark-env.sh, orc-memory, orc-scan, produce_x_platform_fuzz_corpus, pyspark, pyspark.cmd, pyspark2.cmd, run-example, run-example.cmd, run_x_platform_fuzz_corpus, spark-class, spark-class.cmd, spark-class2.cmd, spark-shell, spark-shell.cmd, spark-shell2.cmd, spark-sql, spark-sql.cmd, spark-sql2.cmd, spark-submit, spark-submit.cmd, spark-submit2.cmd, sparkR, sparkR.cmd, sparkR2.cmd, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, numba, pycc, protoc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/chopper singularity registry hpc automated addition for chopper chopper, clang, clang-15, clang-cl, clang-cpp
GITHUB quay.io/biocontainers/chorus2 shpc-registry automated BioContainers addition for chorus2 Chorus2, ChorusDraftPrebuild, ChorusGUI, ChorusHomo, ChorusNGSfilter, ChorusNGSselect, ChorusNoRef, ChorusPBGUI, pyfasta, gff2gff.py, jellyfish, qhelpconverter, bwa, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, qwebengine_convert_dict, plot-vcfstats
GITHUB quay.io/biocontainers/chromap shpc-registry automated BioContainers addition for chromap chromap
GITHUB quay.io/biocontainers/chromatiblock shpc-registry automated BioContainers addition for chromatiblock C-Sibelia.py, Sibelia, cairosvg, chromatiblock, snpEffAnnotate.py, test_pcre, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, seedtop, run_with_lock, f2py3.8, blast_formatter, blastdb_aliastool
GITHUB quay.io/biocontainers/chromeister shpc-registry automated BioContainers addition for chromeister CHROMEISTER, SvtAv1DecApp, SvtAv1EncApp, allVsAll.sh, allVsAll_incremental.sh, aomdec, aomenc, ccmake, cmake, compute_score-nogrid.R, compute_score.R, cpack, ctest, detect_events.py, distro, ed2k-link, edonr256-hash, edonr512-hash, ffmpeg, ffprobe, generate-one-score.sh, gost12-256-hash, gost12-512-hash, h264dec, h264enc, has160-hash, imgcmp, imginfo, index_chromeister.sh, index_chromeister_solo.sh, jasper, jiv, lame, magnet-link, make-cluster.R, make-mean.sh, opencv_annotation, opencv_interactive-calibration, opencv_model_diagnostics, opencv_version, opencv_visualisation, opencv_waldboost_detector, plot.R, plot_diags.R, recompute_scores.sh, rhash, run_and_plot_chromeister.sh, setup_vars_opencv4.sh, sfv-hash, tiger-hash, tth-hash, unfiltered_plot.R, vpxdec, vpxenc, whirlpool-hash, x264, x265, ninja, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv
GITHUB quay.io/biocontainers/chromhmm shpc-registry automated BioContainers addition for chromhmm ChromHMM.sh, download_chromhmm_data.sh, funzip, unzipsfx, zipgrep, zipinfo, unzip, jfr, jaotc, aserver, jdeprscan, jhsdb
GITHUB quay.io/biocontainers/chromimpute shpc-registry automated BioContainers addition for chromimpute ChromImpute, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/chromograph singularity registry hpc automated addition for chromograph chromograph, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc, transicc
GITHUB quay.io/biocontainers/chromosight shpc-registry automated BioContainers addition for chromosight chromosight, cooler, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix
GITHUB quay.io/biocontainers/chromosomer shpc-registry automated BioContainers addition for chromosomer bioformats, chromosomer, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, futurize, pasteurize, python2-config, python2.7-config, python2, python2.7
GITHUB quay.io/biocontainers/chromsize singularity registry hpc automated addition for chromsize chromsize, chromsize-benchmark
GITHUB quay.io/biocontainers/chronumental singularity registry hpc automated addition for chronumental chronumental, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, protoc, tqdm, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/chunked-scatter shpc-registry automated BioContainers addition for chunked-scatter chunked-scatter, scatter-regions, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/cialign singularity registry hpc automated addition for cialign CIAlign, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, gif2rgb, gifbuild, gifclrmp, giffix, giftext, giftool
GITHUB quay.io/biocontainers/cif2cell shpc-registry automated BioContainers addition for cif2cell cif2cell, vasp2cif, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/cigar shpc-registry automated BioContainers addition for cigar 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/circexplorer shpc-registry automated BioContainers addition for circexplorer
GITHUB quay.io/biocontainers/circexplorer2 shpc-registry automated BioContainers addition for circexplorer2 CIRCexplorer2, bam2fastx, bam_merge, bed_to_juncs, contig_to_chr_coords, cuffcompare, cuffdiff, cufflinks, cuffmerge, cuffnorm, cuffquant, fast_circ.py, fetch_ucsc.py, fix_map_ordering, genePredToGtf, gffread, gtfToGenePred, gtf_juncs, gtf_to_fasta, gtf_to_sam, juncs_db, long_spanning_reads, map2gtf, prep_reads, sam_juncs, samtools_0.1.18, segment_juncs, sra_to_solid, tophat, tophat-fusion-post, tophat2, tophat_reports, bedGraphToBigWig, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect
GITHUB quay.io/biocontainers/circlator shpc-registry automated BioContainers addition for circlator AMOScmp, AMOScmp-shortReads, AMOScmp-shortReads-alignmentTrimmed, Bundler, Chainer, FRCurve, FilterEdgesByCluster, Joiner, Linearize, MarkRepeats, Minimo, OrientContigs, OutputMotifs, OutputResults, OutputScaffolds, QtWebPluginProcess, QtWebProcess, RankMotifs, ace2contig, agp2amos, alignGFA, amos2ace, amos2frg, amos2mates, amos2sq, amosvalidate, analyze-read-depth, analyzeSNPs, arachne2ctg, arachne2scaff, arrive, arrive2, asmQC, asmQC2, assembleRNAs, astats, bank-clean, bank-combine, bank-mapping, bank-report, bank-transact, bank-tutorial, bank-unlock, bank2contig, bank2coverage, bank2fasta, bank2lib, bank2sam, bank2scaff, benchmark2arachne, benchmark2ca, benchmark2mates, benchmark2ta, benchmark_qual, benchmark_seq, blasr2coords, blat2nucmer, bogart, bogus, ca2ctg, ca2mates, ca2scaff, ca2singletons, ca2ta, canu, casm-breaks, casm-layout, castats, cavalidate, cestat-cov, cgb2ctg, circlator, clk, clusterSnps, contig-cmp, contig2contig, contig_break_finder, contig_cleaner, contig_overlap_trimmer, coords2cam, correctOverlaps, count-kmers, count-qmers, ctg2fasta, ctg2umdcontig, ctgovl, cvgChop, cvgStat, dbus-daemon-launch-helper, delta2clr, delta2cvg, dumpBlob, dumpContigsAsReads, dumpFeatures, dumpmates, dumpreads, edalign, errorEstimate, excl_seqs, extractContig, extractScaffold, falconsense, fasta_select_len, fasta_to_fastq, fastq64_to_fastq33, fastqAnalyze, fastqSample, fastqSimulate, fastqSimulate-sort, fastq_filter, fastq_rename, fastq_to_fasta_fast, fastqqc, filterCorrectionLayouts, filterCorrectionOverlaps, filter_contig, filter_seq, filterfrg, find-duplicate-reads, find-query-breaks, find-tandem, findChimeras, findErrors, findErrors-Dump, findMissingMates, findTcovSnp, find_ends, fixfastq, fixfrg, fixlib, frg-umd-merge, frg2fasta, frg2fastq, frg2ta, gap-links, gc-content-plot, gccontent, gene_asm, generateCorrectionLayouts, genome-complexity, genome-complexity-fast, getFRCvalues, getN50, getlengths, gnuplot_qt, goBambus2, grow-readbank, gst-completion-helper, gst-plugin-scanner, gst-ptp-helper, hash-overlap, insert-sizes, iterate, kmer-count, kmer-cov, kmer-cov-plot, kmers, ktrimfrg, library-histogram, list-linked-contigs, listGCContent, listReadPlacedStatus, listSingletonMates, listSurrogates, listcontigreads, load-overlaps, loadCorrectedReads, loadErates, loadFeatures, loadTrimmedReads, make-consensus, make-consensus_poly, merge-contigs, message-count, message-extract, message-validate, mhapConvert, minimus, minimus2, minimus2-blat, missing-reads, mmapConvert, normalizeScaffold, nucmer2ovl, nucmerAnnotate, olapsFromContig, ovStoreBucketizer, ovStoreBuild, ovStoreConfig, ovStoreDump, ovStoreIndexer, ovStoreSorter, ovStoreStats, overlap-align, overlapConvert, overlapImport, overlapInCore, overlapInCorePartition, overlapPair, ovl-degr-dist, ovl2OVL, pacbio_post_process, parsecasm, partitionBank, phd2afg, postCAqc, preTA, preassembleFrgs, prefixEditDistance-matchLimitGenerate, printScaff, pullTArchive, pyrosim, qmer-filter, read-cov-plot, readConsensus, readinfo2cam, rearrangeSeqs, recallConsensus, renameReads, rerunMultiTest, resetFragLibrary, revFasta, revScaffold, runAmos, runMultiTest, runTA, runTest, running-cmp, samPileupConsensus, samtoafg, scaff2fasta, scaffoldRange2Ungapped, select-reads, sequence, show-ma-asm, shuffleBank, sidebyside, sim-cover-depth, sim-cover2, sim-shotgun, simple-overlap, simpleContigLoader, simplifyLibraries, singles, sort2, splitHaplotype, splitReads, sqStoreCreate, sqStoreCreatePartition, sqStoreDumpFASTQ, sqStoreDumpMetaData, stats, summarizeMultiTest, suspiciousfeat2region, ta2ace, tab2ovls, tagsum-reduce, tandemCollapse, tarchive2amos, tarchive2ca, tgStoreCompress, tgStoreCoverageStat, tgStoreDump, tgStoreFilter, tgStoreLoad, tgTigDisplay, tigger, tiling2cam, toAmos, toAmos_new, toArachne, trace_comment, trace_comments, trace_convert, trace_scf_dump, trace_seq, translate-fasta, trimByOvl, trimReads, trimends, trimfrg, untangle, updateBankPositions, updateClrRanges, updateDeltaClr, updateLibSizes, utgcns, vecfix, verify-layout, wtdbgConvert, meryl, fastaq, gnuplot, giffilter, gifsponge, spades-bwa, spades-core, spades-corrector-core, spades-gbuilder, spades-gmapper
GITHUB quay.io/biocontainers/circle-map-cpp singularity registry hpc automated addition for circle-map-cpp circle_map++, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap, groupBy, intersectBed, linksBed, mapBed, maskFastaFromBed, mergeBed, multiBamCov
GITHUB quay.io/biocontainers/circle-map shpc-registry automated BioContainers addition for circle-map Circle-Map, numba, pycc, tqdm, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv
GITHUB quay.io/biocontainers/circminer shpc-registry automated BioContainers addition for circminer circminer, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown
GITHUB quay.io/biocontainers/circos-tools shpc-registry automated BioContainers addition for circos-tools binlinks, bundlelinks, calcdatarange, clustal2link, colorinterpolate, convertlinks, filterlinks, make-conf, make-table, orderchr, parse-category, parse-table, randomdata, randomlinks, resample, config_data, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml, basemlg, chi2, codeml, evolver
GITHUB quay.io/biocontainers/circos shpc-registry automated BioContainers addition for circos
GITHUB quay.io/biocontainers/circrna_finder singularity registry hpc automated addition for circrna_finder filterCirc.awk, filterSpliceSiteCircles.pl, nrForwardSplicedReads.pl, postProcessStarAlignment.pl, runStar.pl, starCirclesToBed.pl, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd, df, dir, dircolors, dirname, du, echo, env
GITHUB quay.io/biocontainers/circtools singularity registry hpc automated addition for circtools DCC, FUCHS, circtools, circtools_circtest_wrapper.R, circtools_detect_write_skip_tracks.pl, circtools_enrich_visualization.R, circtools_exon_wrapper.R, circtools_generate_flanking_introns.py, circtools_generate_intron_gtf.sh, circtools_merge_enrich_results.sh, circtools_primex_formatter.R, circtools_primex_wrapper.R, circtools_quickcheck_wrapper.R, circtools_reconstruct_visualization.R, circtools_sirna_formatter.R, create_igv_script.py, create_igv_script_from_gene_names.py, create_igv_script_from_position_list.py, detect_new_exons_from_fuchs_data.py, get_introns_from_ensembl.pl, guided_denovo_circle_structure_parallel, htseq-count-barcodes, make_coverage_picture.R, summarized_coverage_profiles.R, htseq-count, htseq-qa, fonttools, pyftmerge, pyftsubset, ttx, brotli, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap
GITHUB quay.io/biocontainers/circularmapper shpc-registry automated BioContainers addition for circularmapper circulargenerator, realignsamfile, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/circulocov singularity registry hpc automated addition for circulocov circulocov, sdust, k8, paftools.js, minimap2, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, jpgicc, linkicc, psicc, tificc, transicc
GITHUB quay.io/biocontainers/ciri-full singularity registry hpc automated addition for ciri-full CIRI, CIRI-AS, CIRI-AS.pl, CIRI-full, CIRI-full.jar, CIRI.pl, jwebserver, jpackage, qualfa2fq.pl, xa2multi.pl, bwa, cups-config, ippeveprinter, ipptool, hb-info, jfr, tjbench, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java, javac, javadoc, javap
GITHUB quay.io/biocontainers/ciriquant singularity registry hpc automated addition for ciriquant CIRI_DE, CIRI_DE_replicate, CIRIquant, compare_HLA.py, compare_HLA_Omixon.py, extract_Omixon_HLA.py, extract_exons.py, extract_splice_sites.py, hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, hisatgenotype.py, hisatgenotype_HLA_genotyping_PGs.py, hisatgenotype_build_genome.py, hisatgenotype_convert_codis.py, hisatgenotype_extract_codis_data.py, hisatgenotype_extract_cyp_data.py, hisatgenotype_extract_reads.py, hisatgenotype_extract_vars.py, hisatgenotype_hla_cyp.py, hisatgenotype_locus.py, hisatgenotype_locus_samples.py, prepDE.py, prep_CIRIquant, run_extract_CP.sh, run_extract_ILMN.sh, run_genotype_build.sh, run_hisat2_build.sh, run_type_CP.sh, stringtie, qualfa2fq.pl, xa2multi.pl, bwa, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl
GITHUB quay.io/biocontainers/cirtap shpc-registry automated BioContainers addition for cirtap cirtap, ete3, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util
GITHUB quay.io/biocontainers/ciso8601 shpc-registry automated BioContainers addition for ciso8601 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5, wish8.5
GITHUB quay.io/biocontainers/cistrome-ceas shpc-registry automated BioContainers addition for cistrome-ceas ChIPAssoc, build_genomeBG, ceas, ceasBW, gca, sitepro, siteproBW, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py
GITHUB quay.io/biocontainers/cistrome_beta shpc-registry automated BioContainers addition for cistrome_beta BETA, misp, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/cite-seq-count shpc-registry automated BioContainers addition for cite-seq-count CITE-seq-Count, umi_tools, get_objgraph, undill, xkbcli, py.test, pytest, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil
GITHUB quay.io/biocontainers/cityhash shpc-registry automated BioContainers addition for cityhash python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/civicpy singularity registry hpc automated addition for civicpy civicpy, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/cladebreaker singularity registry hpc automated addition for cladebreaker check_samplesheet.py, cladebreaker, list_fixer.py, nextflow, nextflow.bak, conda-env, cph, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd, df, dir, dircolors, dirname, du
GITHUB quay.io/biocontainers/cladeomatic singularity registry hpc automated addition for cladeomatic cladeomatic, corepack, gpustat, npx, py-spy, ray, virtualenv, node, npm, snp-sites, mpg123, mpg123-id3dump, mpg123-strip, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, libgcrypt-config, mpicalc, yat2m, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, attr, balsam, getfattr, lprodump
GITHUB quay.io/biocontainers/clair shpc-registry automated BioContainers addition for clair
GITHUB quay.io/biocontainers/clair3-illumina singularity registry hpc automated addition for clair3-illumina clair3.py, pypy, pypy3, pypy3.6, run_clair3.sh, whatshap, gdbm_dump, gdbm_load, gdbmtool, estimator_ckpt_converter, google-oauthlib-tool, igzip, tf_upgrade_v2, pbunzip2, pbzcat, pbzip2, tflite_convert, saved_model_cli, toco, toco_from_protos, pt2to3, ptdump, ptrepack, pttree, tensorboard, pigz, unpigz, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh
GITHUB quay.io/biocontainers/clair3-trio singularity registry hpc automated addition for clair3-trio clair3.py, pypy, pypy3, pypy3.6, run_clair3_trio.sh, whatshap, gdbm_dump, gdbm_load, gdbmtool, estimator_ckpt_converter, google-oauthlib-tool, igzip, tf_upgrade_v2, pbunzip2, pbzcat, pbzip2, tflite_convert, saved_model_cli, toco, toco_from_protos, vcf_sample_filter.py, pt2to3, ptdump, ptrepack, pttree, tensorboard, vcf_filter.py, vcf_melt, pigz, unpigz, env_parallel
GITHUB quay.io/biocontainers/clair3 shpc-registry automated BioContainers addition for clair3 clair3.py, pypy, pypy3, pypy3.6, run_clair3.sh, whatshap, gdbm_dump, gdbm_load, gdbmtool, estimator_ckpt_converter, google-oauthlib-tool, igzip, tf_upgrade_v2, pbunzip2, pbzcat, pbzip2
GITHUB quay.io/biocontainers/clairvoyante shpc-registry automated BioContainers addition for clairvoyante clairvoyante.py, pypy, virtualenv-pypy, freeze_graph, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, markdown_py, protoc, f2py2, f2py2.7
GITHUB quay.io/biocontainers/clame shpc-registry automated BioContainers addition for clame binning, clame, genFm9, mapping
GITHUB quay.io/biocontainers/clan shpc-registry automated BioContainers addition for clan clan_annotate, clan_index, clan_output, clan_search
GITHUB quay.io/biocontainers/clark shpc-registry automated BioContainers addition for clark CLARK, CLARK-S, CLARK-l, converter, dscriptMaker, exeSeq, extractSeqs, getAbundance, getAccssnTaxID, getConfidenceDensity, getGammaDensity, getTargetSpecificKmersStat, getTargetsDef, getfilesToTaxNodes, makeSummaryTables, tar
GITHUB quay.io/biocontainers/classpro singularity registry hpc automated addition for classpro ClassGS, ClassPro, class2acc, class2cns, prof2class
GITHUB quay.io/biocontainers/cleanifier singularity registry hpc automated addition for cleanifier cleanifier, idle3.13, pydoc3.13, python3.13, python3.13-config, numpy-config, py.test, pytest, numba, jsonschema, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, normalizer
GITHUB quay.io/biocontainers/clearcnv shpc-registry automated BioContainers addition for clearcnv clearCNV, dash-generate-components, renderer, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical, bam2bed_sge, bam2bed_sge-float128
GITHUB quay.io/biocontainers/clearcut shpc-registry automated BioContainers addition for clearcut clearcut
GITHUB quay.io/biocontainers/clermontyping singularity registry hpc automated addition for clermontyping clermonTyping.sh, numpy-config, pandoc-lua, pandoc-server, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, seedtop, test_pcre, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, run_with_lock, pandoc, blast_formatter, blastdb_aliastool, blastdbcheck, blastdbcmd, blastn
GITHUB quay.io/biocontainers/clever-toolkit shpc-registry automated BioContainers addition for clever-toolkit add-score-tags-to-bam, bam-to-alignment-priors, bam2fastq, clever, clever-core, ctk-version, evaluate-sv-predictions, extract-bad-reads, filter-bam, filter-variations, genotyper, insert-length-histogram, laser, laser-core, laser-recalibrate, mateclever, mateclever-compute-rois, merge-putative-variations, merge-to-vcf, multiline-to-xa, plot-insert-size-distribution, postprocess-predictions, precompute-distributions, read-group-stats, remove-redundant-variations, split-priors-by-chromosome, split-reads, vcf-to-deletionlist, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, qhelpconverter, guess-ploidy.py
GITHUB quay.io/biocontainers/clinker-py shpc-registry automated BioContainers addition for clinker-py clinker, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, faidx, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10
GITHUB quay.io/biocontainers/clinker shpc-registry automated BioContainers addition for clinker
GITHUB quay.io/biocontainers/clinod shpc-registry automated BioContainers addition for clinod analyze, batchman, bison, clinod, convert2snns, feedback-gennet, ff_bignet, flex, flex++, isnns, linknets, m4, mkhead, mkout, mkpat, netlearn, netperf, pat_sel, pat_sel_simple, snns, snns2c, snnsbat, td_bignet, xgui, yacc, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/clinvar-this singularity registry hpc automated addition for clinvar-this clinvar-this, tabulate, jsonschema, normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/clinvar-tsv shpc-registry automated BioContainers addition for clinvar-tsv clinvar_tsv, plac_runner.py, yte, docutils, pulptest, cbc, clp, snakemake, snakemake-bash-completion, tabulate, jupyter-trust
GITHUB quay.io/biocontainers/clipandmerge shpc-registry automated BioContainers addition for clipandmerge ClipAndMerge, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/clipcontext shpc-registry automated BioContainers addition for clipcontext clipcontext, twoBitToFa, twoBitInfo, markdown_py, my_print_defaults, mysql_config, perror, shiftBed, annotateBed, bamToBed, bamToFastq
GITHUB quay.io/biocontainers/clipkit shpc-registry automated BioContainers addition for clipkit clipkit, tqdm, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/clippy shpc-registry automated BioContainers addition for clippy clippy, dash-generate-components, renderer, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, flask, pybabel, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py
GITHUB quay.io/biocontainers/cliquesnv shpc-registry automated BioContainers addition for cliquesnv cliquesnv, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, 2to3-3.10
GITHUB quay.io/biocontainers/cloci singularity registry hpc automated addition for cloci acc2fa, acc2gbk, acc2gff, acc2locus, add2gff, annotationStats, assemblyStats, bioreform, bsmp2info, cloci, cloci2enrich, cloci2stats, coords2fa, crap, db2files, db2hgs, db2microsyntree, db2search, extract_mtdb, fa2clus, fa2hmmer2fa, fa2mass, fa2tree, fna2faa, fsa2xml, gbf2info, gff2seq, gff2svg, gtk-builder-tool, gtk-encode-symbolic-svg, gtk-launch, gtk-query-immodules-3.0, gtk-query-settings, hg2hg_net, hlg2biofile, hlg2hlg_net, jgiDwnld, just-top-hits, manage_mtdb, mtdb, ncbiAcc2fa, ncbiDwnld, ome2name, predb2mtdb, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, s2subs, systematic-mutations, update_mtdb, wayland-scanner, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, iqtree2, aria2c, gawk-5.3.0, gawkbug, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank
GITHUB quay.io/biocontainers/clonalframeml shpc-registry automated BioContainers addition for clonalframeml ClonalFrameML
GITHUB quay.io/biocontainers/cloudspades singularity registry hpc automated addition for cloudspades idle3.13, pydoc3.13, python3.13, python3.13-config, coronaspades.py, metaplasmidspades.py, metaviralspades.py, rnaviralspades.py, spades-convert-bin-to-fasta, spades-gsimplifier, spades-kmer-estimating, spades-read-filter, spades-bwa, spades-core, spades-corrector-core, spades-gbuilder, spades-gmapper, spades-hammer, spades-ionhammer, spades-kmercount, metaspades.py, plasmidspades.py, rnaspades.py, spades.py, spades_init.py
GITHUB quay.io/biocontainers/clove shpc-registry automated BioContainers addition for clove clove, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/clsify shpc-registry automated BioContainers addition for clsify abi-dump.2.10.0, align-info.2.10.0, alignmentSieve, bam-load.2.10.0, bamCompare, bamCoverage, bamPEFragmentSize, bigWigToBedGraph, bigwigCompare, bioawk, bioconvert, bioconvert_init, bioconvert_sniffer, bioconvert_stats, cache-mgr.2.10.0, cg-load.2.10.0, clsify, computeGCBias, computeMatrix, computeMatrixOperations, correctGCBias, dash-generate-components, deeptools, dsrc, estimateReadFiltering, estimateScaleFactor, fasterq-dump-orig.2.10.0, fasterq-dump.2.10.0, fastq-dump-orig.2.10.0, fastq-dump.2.10.0, go, gofmt, illumina-dump.2.10.0, kar.2.10.0, kdbmeta.2.10.0, kget.2.10.0, latf-load.2.10.0, ldc-build-runtime, ldc-profdata, ldc-prune-cache, ldc2, ldmd2, mawk, multiBamSummary, multiBigwigSummary, plink, plotCorrelation, plotCoverage, plotEnrichment, plotFingerprint, plotHeatmap, plotPCA, plotProfile, prefetch-orig.2.10.0, prefetch.2.10.0, rcexplain.2.10.0, renderer, sam-dump-orig.2.10.0, sam-dump.2.10.0, sff-dump.2.10.0, squizz, sra-pileup-orig.2.10.0, sra-pileup.2.10.0, sra-sort.2.10.0, sra-stat.2.10.0, srapath-orig.2.10.0, srapath.2.10.0, sratools.2.10.0, test-sra.2.10.0, vdb-config.2.10.0, vdb-copy.2.10.0, vdb-decrypt.2.10.0, vdb-dump.2.10.0, vdb-encrypt.2.10.0, vdb-lock.2.10.0, vdb-passwd.2.10.0, vdb-unlock.2.10.0, vdb-validate.2.10.0, wiggletools, easydev_buildPackage, ibrowse, multigit, sambamba, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128
GITHUB quay.io/biocontainers/clust shpc-registry automated BioContainers addition for clust clust, conv-template, from-template, qhelpconverter, pylupdate5, pyrcc5, pyuic5, sip, qdoc, gst-device-monitor-1.0, gst-discoverer-1.0
GITHUB quay.io/biocontainers/clustalo shpc-registry automated BioContainers addition for clustalo clustalo
GITHUB quay.io/biocontainers/clustalw shpc-registry automated BioContainers addition for clustalw clustalw, clustalw2
GITHUB quay.io/biocontainers/cluster-picker shpc-registry automated BioContainers addition for cluster-picker cluster-picker, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/cluster_vcf_records shpc-registry automated BioContainers addition for cluster_vcf_records vt, tabix++, bc, dc, fastaq, abba-baba, bFst, bed2region, bgziptabix, dumpContigsFromHeader
GITHUB quay.io/biocontainers/clusterfunk singularity registry hpc automated addition for clusterfunk clusterfunk, dendropy-format, sumlabels.py, sumtrees.py, chardetect, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/clustergrammer shpc-registry automated BioContainers addition for clustergrammer f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/clusterone shpc-registry automated BioContainers addition for clusterone clusterone, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/clusterpicker shpc-registry automated BioContainers addition for clusterpicker ClusterPicker, cluster-picker, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/clusty singularity registry hpc automated addition for clusty clusty
GITHUB quay.io/biocontainers/cmaple singularity registry hpc automated addition for cmaple cmaple, cmaple-aa
GITHUB quay.io/biocontainers/cmappy shpc-registry automated BioContainers addition for cmappy concat, gct2gctx, gctx2gct, subset, f2py3.6, normalizer, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6
GITHUB quay.io/biocontainers/cmash shpc-registry automated BioContainers addition for cmash MakeDNADatabase.py, MakeNodeGraph.py, MakeStreamingDNADatabase.py, MakeStreamingPrefilter.py, QueryDNADatabase.py, StreamingQueryDNADatabase.py, StreamingQueryDNADatabase_queue.py, abundance-dist-single.py, abundance-dist.py, annotate-partitions.py, count-median.py, do-partition.py, extract-long-sequences.py, extract-paired-reads.py, extract-partitions.py, fastq-to-fasta.py, filter-abund-single.py, filter-abund.py, filter-stoptags.py, find-knots.py, interleave-reads.py, load-graph.py, load-into-counting.py, make-initial-stoptags.py, merge-partitions.py, normalize-by-median.py, partition-graph.py, readstats.py, sample-reads-randomly.py, split-paired-reads.py, trim-low-abund.py, unique-kmers.py, screed, f2py3.8, opj_compress, opj_decompress, opj_dump, h5clear, h5format_convert, h5watch, h5fc, gif2h5
GITHUB quay.io/biocontainers/cmat singularity registry hpc automated addition for cmat VERSION, cmat, coveralls, jwebserver, nextflow.bak, nextflow, coverage, pcre2posix_test, basenc, b2sum, ls, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd, df
GITHUB quay.io/biocontainers/cmfinder shpc-registry automated BioContainers addition for cmfinder COPYRIGHT, RNAPhylo, ScoreMotif.pl, Stockholm.pm, _cmfinder.pl, align, canda, candf, cands, cmfinder, cmfinder.pl, cmfinder04, cmfinder04.pl, comb_motif.pl, compare_motif.pl, count_seq, diff_motif, fasta2col, filter.pl, findphyl, hmmpair, io.pl, merge_motif.pl, mltree, perl5.22.2, rank_cmfinder.pl, rm_dup.pl, select_cmfinder.pl, sreformat, summarize, summary_rank.pl, test_pcre, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, clustalw, c2ph, pstruct, seedtop, cluster
GITHUB quay.io/biocontainers/cmip shpc-registry automated BioContainers addition for cmip avgEpsGrid, canal, cmip, getPatch, grd2cube, surfnet2binaryGrid, titration, watden
GITHUB quay.io/biocontainers/cmph shpc-registry automated BioContainers addition for cmph cmph
GITHUB quay.io/biocontainers/cmsearch_tblout_deoverlap singularity registry hpc automated addition for cmsearch_tblout_deoverlap cmsearch-deoverlap.pl
GITHUB quay.io/biocontainers/cmseq shpc-registry automated BioContainers addition for cmseq breadth_depth.py, consensus.py, consensus_aDNA.py, poly.py, polymut.py, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py
GITHUB quay.io/biocontainers/cmsip shpc-registry automated BioContainers addition for cmsip LiBis, bamsort.sh, bbf, bseqc2, bseqc2mbiasplot.R, bsmap, cmsip, fetchChromSizes, mcall, mcomp, moabs, numCI, pefilter, preprocess_novoalign.sh, redepth.pl, routines.pm, template_for_cfg, template_for_qsub, trim_galore, cutadapt, fastqc, gawk-5.1.0, awk, gawk, pigz, unpigz, my_print_defaults, mysql_config, perror
GITHUB quay.io/biocontainers/cmv shpc-registry automated BioContainers addition for cmv CMCV, CMCWStoCMCV, CMCtoHMMC, CMV, CMVJson, HMMCV, HMMCtoCMC, HMMV
GITHUB quay.io/biocontainers/cnasim singularity registry hpc automated addition for cnasim cnasim, demes, dwgsim, dwgsim_eval, msp, mspms, tskit, annot-tsv, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, jsonschema, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl
GITHUB quay.io/biocontainers/cnmf singularity registry hpc automated addition for cnmf cnmf, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, h5tools_test_utils, scanpy, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, h5delete, numba
GITHUB quay.io/biocontainers/cnv-phenopacket singularity registry hpc automated addition for cnv-phenopacket cnv-phenopacket, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, jsonschema
GITHUB quay.io/biocontainers/cnv-vcf2json singularity registry hpc automated addition for cnv-vcf2json cnv-vcf2json, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, jsonschema
GITHUB quay.io/biocontainers/cnv_facets shpc-registry automated BioContainers addition for cnv_facets cnv_facets.R, snp-pileup, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, wget, ace2sam, blast2sam.pl
GITHUB quay.io/biocontainers/cnvetti shpc-registry automated BioContainers addition for cnvetti cnvetti
GITHUB quay.io/biocontainers/cnvkit shpc-registry automated BioContainers addition for cnvkit cnv_annotate.py, cnv_expression_correlate.py, cnv_updater.py, cnv_ztest.py, cnvkit.py, guess_baits.py, reference2targets.py, skg_convert.py, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, faidx, 2to3-3.5, idle3.5, pydoc3.5, python3.5
GITHUB quay.io/biocontainers/cnvnator shpc-registry automated BioContainers addition for cnvnator afterimage-config, afterimage-libs, cconfig, cmsd, cnvnator, cnvnator2VCF.pl, davix-cp, davix-get, davix-http, davix-ls, davix-mkdir, davix-mv, davix-put, davix-rm, davix-tester, davix-unit-tests, frm_admin, frm_purged, frm_xfragent, frm_xfrd, genreflex, glewinfo, hadd, hist2workspace, mpxstats, plotbaf.py, plotcircular.py, plotrdbaf.py, prepareHistFactory, proofserv, proofserv.exe, pythia8-config, rmkdepend, root, root-config, root.exe, rootbrowse, rootcint, rootcling, rootcp, rootdrawtree, rooteventselector, rootls, rootmkdir, rootmv, rootn.exe, rootnb.exe, rootprint, rootrm, roots, roots.exe, rootslimtree, scitokens-create, scitokens-list-access, scitokens-test, scitokens-test-access, scitokens-verify, setxrd.csh, setxrd.sh, soapcpp2, thisroot.csh, thisroot.fish, thisroot.sh, visualinfo, wait41, wsdl2h, xpdtest, xrdacctest, xrdadler32, xrdcopy, xrdcp, xrdcrc32c, xrdfs, xrdgsiproxy, xrdgsitest, xrdmapc, xrdpfc_print, xrdpinls, xrdpwdadmin, xrdsssadmin, xrootd, xrootd-config, xxh128sum, xxh32sum, xxh64sum, xxhsum, fitscopy, fpack, funpack, imcopy, smem, cxpm
GITHUB quay.io/biocontainers/cnvpytor shpc-registry automated BioContainers addition for cnvpytor cnvpytor, vba_extract.py, mirror_server, mirror_server_stop, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, img2webp
GITHUB quay.io/biocontainers/coast shpc-registry automated BioContainers addition for coast coast, bokeh, tabulate, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns
GITHUB quay.io/biocontainers/coatran shpc-registry automated BioContainers addition for coatran coatran_constant, coatran_expgrowth, coatran_inftime, coatran_transtree
GITHUB quay.io/biocontainers/cobra-meta singularity registry hpc automated addition for cobra-meta cobra-meta, blastn_vdb, tblastn_vdb, uuid, uuid-config, test_pcre, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl, sort-table
GITHUB quay.io/biocontainers/cobra shpc-registry automated BioContainers addition for cobra glpsol, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, xslt-config
GITHUB quay.io/biocontainers/cobs shpc-registry automated BioContainers addition for cobs cobs, xxhsum
GITHUB quay.io/biocontainers/coconet-binning shpc-registry automated BioContainers addition for coconet-binning coconet, pybind11-config, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, igraph, doesitcache, iptest3, iptest, ipython3, ipython, cygdb
GITHUB quay.io/biocontainers/cocoscore shpc-registry automated BioContainers addition for cocoscore fasttext, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier
GITHUB quay.io/biocontainers/codan shpc-registry automated BioContainers addition for codan codan.py, fasta_to_tops, predict, tops-viterbi_decoding, bp_pairwise_kaks.pl, bp_search2BSML.pl, CA.pm, cacert.pem, index-themes, bp_aacomp.pl, bp_biofetch_genbank_proxy.pl, bp_bioflat_index.pl, bp_biogetseq.pl, bp_blast2tree.pl
GITHUB quay.io/biocontainers/codingorf shpc-registry automated BioContainers addition for codingorf codingorf, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/codingquarry shpc-registry automated BioContainers addition for codingquarry CodingQuarry, CufflinksGTF_to_CodingQuarryGFF3.py, run_CQ-PM_mine.sh, run_CQ-PM_stranded.sh, run_CQ-PM_unstranded.sh, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/codoff singularity registry hpc automated addition for codoff codoff, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config
GITHUB quay.io/biocontainers/codonw shpc-registry automated BioContainers addition for codonw aau, base3s, bases, cbi, codonw, cu, cutab, cutot, dinuc, enc, fop, gc3s, raau, reader, rscu, tidy, transl, cai, gc
GITHUB quay.io/biocontainers/cofold shpc-registry automated BioContainers addition for cofold CoFold, RNAcofold, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex, RNAsnoop, Kinfold, RNALfold, RNAaliduplex, RNAalifold
GITHUB quay.io/biocontainers/cogclassifier singularity registry hpc automated addition for cogclassifier COGclassifier, plot_cog_classifier_barchart, plot_cog_classifier_piechart, jsonschema, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/cogent shpc-registry automated BioContainers addition for cogent mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, mpifort, mpic++, mpicc
GITHUB quay.io/biocontainers/cogent3 singularity registry hpc automated addition for cogent3 numba, pycc, tqdm, chardetect, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/cogtriangles singularity registry hpc automated addition for cogtriangles COGcognitor, COGlse, COGmakehash, COGreadblast, COGtriangles
GITHUB quay.io/biocontainers/coidb singularity registry hpc automated addition for coidb cluster_bold.py, coidb, f2py3.11, format_sintax.py, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, stone, seqkit, plac_runner.py, yte, funzip, unzipsfx, zipgrep, zipinfo, docutils, vsearch, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, unzip, cmark, pulptest
GITHUB quay.io/biocontainers/coils shpc-registry automated BioContainers addition for coils coils-svr.pl, coils-wrap.pl, ncoils
GITHUB quay.io/biocontainers/coinfinder shpc-registry automated BioContainers addition for coinfinder coinfinder, ffmpeg, ffprobe, h264dec, h264enc, lame, vpxdec, vpxenc, x264, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv, psktool
GITHUB quay.io/biocontainers/cojac shpc-registry automated BioContainers addition for cojac cooc-colourmut, cooc-curate, cooc-mutbamscan, cooc-pubmut, cooc-tabmut, phe2cojac, normalizer, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/colabfold singularity registry hpc automated addition for colabfold a3m_database_extract, a3m_database_filter, a3m_database_reduce, a3m_extract, a3m_reduce, colabfold_batch, colabfold_search, colabfold_split_msas, cstranslate, ffindex_apply, ffindex_build, ffindex_from_fasta, ffindex_from_fasta_with_split, ffindex_get, ffindex_modify, ffindex_order, ffindex_reduce, ffindex_unpack, flatc, gawk-5.2.2, gawkbug, hhalign, hhalign_omp, hhblits, hhblits_ca3m, hhblits_omp, hhconsensus, hhfilter, hhmake, hhsearch, hhsearch_omp, jlpm, jsonpointer, jupyter-events, jupyter-lab, jupyter-labextension, jupyter-labhub, jupyter-server, kalign, pdbfixer, pyjson5, qtpy, wsdump, jupyter-console, jupyter-qtconsole, aria2c, h5fuse.sh, jupyter-execute, jupyter-dejavu, send2trash, import_pb_to_tensorboard, mmseqs, jupyter-notebook, jupyter-nbconvert, pybabel, estimator_ckpt_converter, h5delete, jupyter-kernel, jupyter-kernelspec, jupyter-run, google-oauthlib-tool, tf_upgrade_v2, curve_keygen, tflite_convert, saved_model_cli, toco, toco_from_protos, awk
GITHUB quay.io/biocontainers/collect-columns shpc-registry automated BioContainers addition for collect-columns collect-columns, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, faidx, 2to3-3.8, idle3.8, pydoc3.8, python3.8
GITHUB quay.io/biocontainers/collect_mgf shpc-registry automated BioContainers addition for collect_mgf collect_mgf
GITHUB quay.io/biocontainers/collectl shpc-registry automated BioContainers addition for collectl collectl, colmux, perl5.22.0, c2ph, pstruct, podselect
GITHUB quay.io/biocontainers/colombo shpc-registry automated BioContainers addition for colombo Colombo, SigiCRF, SigiHMM, mSigiHMM, jaotc, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs, pack200, rmic
GITHUB quay.io/biocontainers/colorbrewer shpc-registry automated BioContainers addition for colorbrewer 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/colord shpc-registry automated BioContainers addition for colord colord
GITHUB quay.io/biocontainers/colorid_bv singularity registry hpc automated addition for colorid_bv colorid_bv
GITHUB quay.io/biocontainers/colormap shpc-registry automated BioContainers addition for colormap easydev_buildPackage, ibrowse, multigit, browse, easy_install-3.6, qhelpconverter, pylupdate5, pyrcc5, pyuic5, sip
GITHUB quay.io/biocontainers/combined-pvalues shpc-registry automated BioContainers addition for combined-pvalues comb-p, toolshed, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/comebin singularity registry hpc automated addition for comebin run_comebin.sh, checkm, FragGeneScan, hmmc2, hmmerfm-exactmatch, run_FragGeneScan.pl, rppr, guppy, pplacer, torchrun, ninja, igraph, scanpy, convert-caffe2-to-onnx, convert-onnx-to-caffe2, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch
GITHUB quay.io/biocontainers/commec singularity registry hpc automated addition for commec commec, bsmp2info, fsa2xml, gbf2info, just-top-hits, systematic-mutations, taxonkit, xmlget, xmltext, aaindexextract, abiview, acdgalaxy, acdlog, acdpretty, acdtable, acdtrace, acdvalid, aligncopy, aligncopypair, antigenic, assemblyget, backtranambig, backtranseq, banana, biosed, btwisted
GITHUB quay.io/biocontainers/commet shpc-registry automated BioContainers addition for commet Commet.py, bvop, compare_reads, dendro.R, extract_reads, filter_reads, heatmap.r, index_and_search, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/compalignp shpc-registry automated BioContainers addition for compalignp afetch, alistat, compalign, compalignp, compstruct, revcomp, seqsplit, seqstat, sfetch, shuffle, sindex, sreformat, translate, weight
GITHUB quay.io/biocontainers/comparative-annotation-toolkit shpc-registry automated BioContainers addition for comparative-annotation-toolkit SplicedAlignment.pm, _toil_mesos_executor, _toil_worker, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, autoRun.pathInfo, axtChain, bam2wig, bamToPsl, bamtools-2.4.1, bedSort, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, cegma2gff.pl, chainMergeSort, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, clusterGenes, createAugustusJoblist.pl, cwltest, cwltoil, del_from_prfl.pl, espoca, evalCGP.pl, eval_dualdecomp.pl, exonerate2hints.pl, exoniphyDb2hints.pl, extractTranscriptEnds.pl, filter-ppx.pl, filterGenes.pl, filterGenesIn_mRNAname.pl, filterGenesIn_mRNAname.pl.patch, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, galaxy-tool-test, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, genePredToBed, genePredToFakePsl, genePredToGtf, getAnnoFasta.pl, getSeq, gff2gbSmallDNA.pl, gff2ps_mycustom, gff3ToGenePred, gffGetmRNA.pl, gp2othergp.pl, gtf2gff.pl, gtf2gff.pl.origexit, gtfToGenePred, hal2maf_split.pl, helpMod.pm, intron2exex.pl, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, load2sqlitedb, lp_solve, luigi, luigi-deps, luigi-deps-tree, luigi-grep, luigid, maf2conswig.pl, makeMatchLists.pl, makeUtrTrainingSet.pl, maskNregions.pl, mock-cwl-runner, moveParameters.pl, msa2prfl.pl, mulled-build, mulled-build-channel, mulled-build-files, mulled-build-tool, mulled-search, new_species.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, peptides2alternatives.pl, peptides2hints.pl, phastconsDB2hints.pl, polyA2hints.pl, prints2prfl.pl, pslCDnaFilter, pslCheck, pslMap, pslMap.pl, pslMapPostChain, pslPosTarget, pslRecalcMatch, pslToBigPsl, pyfasta, randomSplit.pl, ratewig.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, samMap.pl, scipiogff2gff.pl, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, splitMfasta.pl, split_wiggle.pl, summarizeACGTcontent.pl, toil, toil-cwl-runner, toil-wdl-runner, transMap2hints.pl, transMapPslToGenePred, uniquePeptides.pl, utrgff2gbrowse.pl, webserver-results.body, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, wsdump.py, yaml2gff.1.4.pl, augustus, bam2hints, cwltool, etraining, fastBlockSearch, filterBam, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign
GITHUB quay.io/biocontainers/compare-reads shpc-registry automated BioContainers addition for compare-reads guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, python2-config, python2.7-config, python2
GITHUB quay.io/biocontainers/comparem shpc-registry automated BioContainers addition for comparem comparem, diamond, prodigal, futurize, pasteurize, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/comparem2 singularity registry hpc automated addition for comparem2 archspec, asscom2, bsdunzip, comparem2, distro, jsondiff, jsonpatch, numpy-config, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex, rst2xml, jsonpointer, mamba-package, conda2solv, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, conda-env, cph, bsdcat, bsdcpio, bsdtar, yte, plac_runner.py, docutils, pulptest, cbc, clp, snakemake-bash-completion, humanfriendly, snakemake, tabulate, jupyter-trust
GITHUB quay.io/biocontainers/compleasm singularity registry hpc automated addition for compleasm compleasm, hb-info, jwebserver, miniprot, run-sepp.sh, run_sepp.py, run_upp.py, seppJsonMerger.jar, split_sequences.py, hmmc2, hmmerfm-exactmatch, guppy, pplacer, dendropy-format, tjbench, sumlabels.py, sumtrees.py, jpackage, cups-config, ippeveprinter, ipptool, alimask, hmmconvert, hmmemit, hmmfetch, hmmlogo, hmmpgmd, hmmpress, hmmscan, hmmsearch, hmmsim, hmmstat, jackhmmer, makehmmerdb
GITHUB quay.io/biocontainers/comut shpc-registry automated BioContainers addition for comut f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc
GITHUB quay.io/biocontainers/concoct shpc-registry automated BioContainers addition for concoct concoct, concoct_coverage_table.py, concoct_refine, cut_up_fasta.py, extract_fasta_bins.py, merge_cutup_clustering.py, nosetests-3.9, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info
GITHUB quay.io/biocontainers/concoord singularity registry hpc automated addition for concoord dist, dist.exe, disco
GITHUB quay.io/biocontainers/condiga singularity registry hpc automated addition for condiga condiga, taxonkit, vba_extract.py, convert, f2py3.11, sdust, k8, paftools.js, minimap2, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tqdm, python3.1
GITHUB quay.io/biocontainers/conduit-assembler shpc-registry automated BioContainers addition for conduit-assembler conduit, conduitUtils, perl5.32.0, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s
GITHUB quay.io/biocontainers/confindr shpc-registry automated BioContainers addition for confindr confindr, confindr.py, confindr_create_db, confindr_database_setup, kma, kma_index, kma_shm, kma_update, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, sketchblacklist2.sh, splitribo.sh, addssu.sh
GITHUB quay.io/biocontainers/conifer singularity registry hpc automated addition for conifer conifer, is_a_parent_of_b, show_ancestors, taxid_name
GITHUB quay.io/biocontainers/conipher singularity registry hpc automated addition for conipher git2, hb-info, f2py3.11, tjbench, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, pandoc, python3.1
GITHUB quay.io/biocontainers/connectome-workbench shpc-registry automated BioContainers addition for connectome-workbench
GITHUB quay.io/biocontainers/connor shpc-registry automated BioContainers addition for connor connor, cygdb, cython, cythonize, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl
GITHUB quay.io/biocontainers/consan shpc-registry automated BioContainers addition for consan bstats, comppair, conus_compare, conus_train, pModel, scompare, sfold, strain_ml
GITHUB quay.io/biocontainers/consel shpc-registry automated BioContainers addition for consel catass, catci, catmt, catpv, catrep, consel, makerep, makermt, randrep, seqmt, treeass
GITHUB quay.io/biocontainers/consensify singularity registry hpc automated addition for consensify consensify_c
GITHUB quay.io/biocontainers/consensusfixer shpc-registry automated BioContainers addition for consensusfixer ConsensusFixer, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/consent shpc-registry automated BioContainers addition for consent CONSENT-correct, CONSENT-correction, CONSENT-explode, CONSENT-merge, CONSENT-polish, CONSENT-polishing, CONSENT-reformatPAF, sdust, paftools.js, minimap2, k8
GITHUB quay.io/biocontainers/consplice singularity registry hpc automated addition for consplice consplice, gsort, cyvcf2, gff2gff.py, coloredlogs, humanfriendly, tabulate, natsort, faidx, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, f2py3.8, htsfile, bgzip, tabix, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, perl5.32.1, streamzip
GITHUB quay.io/biocontainers/constava singularity registry hpc automated addition for constava constava, gsd, mrcfile-header, mrcfile-validate, nc3tonc4, nc4tonc3, ncinfo, h5tools_test_utils, h5fuse.sh, h5delete, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff, hdp
GITHUB quay.io/biocontainers/constax shpc-registry automated BioContainers addition for constax AbundanceStats, AlignmentTools, Clustering, FrameBot, KmerFilter, ProbeMatch, ReadSeq, SeqFilters, SequenceMatch, classifier, constax, constax_no_inputs.sh, hmmgs, vsearch, CA.pm, cacert.pem, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras, pm-collect
GITHUB quay.io/biocontainers/constellations shpc-registry automated BioContainers addition for constellations constellations, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/contammix shpc-registry automated BioContainers addition for contammix contammix, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa
GITHUB quay.io/biocontainers/contatester singularity registry hpc automated addition for contatester calculAllelicBalance.sh, checkContaminant.sh, contaReport.R, contatester, depth_estim_from_vcf.sh, recupConta.sh, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun, shmemcc, shmemfort, shmemrun, flask, gff2gff.py, aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info, opal_wrapper, orte-clean, orte-info, orte-server
GITHUB quay.io/biocontainers/conterminator shpc-registry automated BioContainers addition for conterminator conterminator, gawk-5.1.0, awk, gawk
GITHUB quay.io/biocontainers/contignet singularity registry hpc automated addition for contignet ContigNet, mpg123, mpg123-id3dump, mpg123-strip, orc-bugreport, orcc, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, libgcrypt-config, mpicalc, yat2m, torchrun, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, attr, balsam, getfattr, jackd
GITHUB quay.io/biocontainers/contigtax shpc-registry automated BioContainers addition for contigtax contigtax, evaluate_contigtax.py, ete3, compile-et.pl, prerr.properties, diamond, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config
GITHUB quay.io/biocontainers/contrafold shpc-registry automated BioContainers addition for contrafold contrafold, score_prediction, perl5.32.1, streamzip
GITHUB quay.io/biocontainers/control-freec shpc-registry automated BioContainers addition for control-freec _makeGraph_Chromosome.R, assess_significance.R, freec, freec2bed.pl, freec2circos.pl, get_fasta_lengths.pl, makeGraph.R, makeGraph.R~, makeGraph_Chromosome.R, vcf2snpFreec.pl, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa
GITHUB quay.io/biocontainers/conus shpc-registry automated BioContainers addition for conus ambtest, conus_compare, conus_fold, conus_train, findopt, pocheck, reorder, scheck, stk2ct, weedamb
GITHUB quay.io/biocontainers/convert_zero_one_based shpc-registry automated BioContainers addition for convert_zero_one_based convert_zero_one_based, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/coolbox shpc-registry automated BioContainers addition for coolbox coolbox, jupyter-console, jupyter-qtconsole, jupyter-server, voila, wsdump.py, cooler, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix
GITHUB quay.io/biocontainers/cooler shpc-registry automated BioContainers addition for cooler cooler, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix, pairs_merger
GITHUB quay.io/biocontainers/coolpuppy singularity registry hpc automated addition for coolpuppy aomdec, aomenc, coolpup.py, cooltools, dask, dav1d, dividepups.py, m2r2, plotpup.py, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, aec, cooler, imageio_download_bin, imageio_remove_bin, skivi, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix, pairs_merger
GITHUB quay.io/biocontainers/cooltools shpc-registry automated BioContainers addition for cooltools cooltools, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng
GITHUB quay.io/biocontainers/copernicusmarine singularity registry hpc automated addition for copernicusmarine cachier, copernicusmarine, h5fuse, nc3tonc4, nc4tonc3, ncinfo, pysemver, watchmedo, dask, zipcmp, zipmerge, ziptool, jp.py, h5delete, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff, hdp
GITHUB quay.io/biocontainers/coprarna shpc-registry automated BioContainers addition for coprarna CopraRNA2.pl, IntaRNA, IntaRNA_1ui.pl, IntaRNA_up_1ui.pl, RNAmultifold, _fclique, _fconsense, _fcontml, _fcontrast, _fdiscboot, _fdnacomp, _fdnadist, _fdnainvar, _fdnaml, _fdnamlk, _fdnamove, _fdnapars, _fdnapenny, _fdollop, _fdolmove, _fdolpenny, _fdrawgram, _fdrawtree, _ffactor, _ffitch, _ffreqboot, _fgendist, _fkitsch, _fmix, _fmove, _fneighbor, _fpars, _fpenny, _fproml, _fpromlk, _fprotdist, _fprotpars, _frestboot, _frestdist, _frestml, _fretree, _fseqboot, _fseqbootall, _ftreedist, _ftreedistpair, addtit.pl, blast2homfile.pl, bp_einfo, bp_genbank_ref_extractor, cmpr.pl, convgraph.pl, domclust, fasta2genefile.pl, fclique, fconsense, fcontml, fcontrast, fdiscboot, fdnacomp, fdnadist, fdnainvar, fdnaml, fdnamlk, fdnamove, fdnapars, fdnapenny, fdollop, fdolmove, fdolpenny, fdrawgram, fdrawtree, ffactor, ffitch, ffreqboot, fgendist, fkitsch, fmix, fmove, fneighbor, fpars, fpenny, fproml, fpromlk, fprotdist, fprotpars, frestboot, frestdist, frestml, fretree, fseqboot, fseqbootall, ftreedist, ftreedistpair, phantomjs, clustalo, _bdftogd, _gd2copypal, _gd2togif, _gd2topng, _gdcmpgif, _gdparttopng, _gdtopng, _giftogd2, _pngtogd
GITHUB quay.io/biocontainers/coptr singularity registry hpc automated addition for coptr coptr, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fonttools, pyftmerge, pyftsubset, ttx
GITHUB quay.io/biocontainers/coral shpc-registry automated BioContainers addition for coral coral, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/core-snp-filter singularity registry hpc automated addition for core-snp-filter coresnpfilter, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1
GITHUB quay.io/biocontainers/corekaburra singularity registry hpc automated addition for corekaburra Corekaburra, gffutils-cli, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, activate-global-python-argcomplete, fonttools, pyftmerge, pyftsubset, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc
GITHUB quay.io/biocontainers/coreutils shpc-registry automated BioContainers addition for coreutils basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown
GITHUB quay.io/biocontainers/corgi singularity registry hpc automated addition for corgi alembic, celery, configure_accelerate, cookiecutter, corgi, corgi-train, databricks, dbfs, gunicorn, mlflow, optuna, pathy, pyaml, pybtex, pybtex-convert, pybtex-format, shortuuid, slugify, spacy, sqlformat, termgraph, torchapp, torchapp-imageclassifier, wandb, wb, weasel, wsdump, httpx, pbr, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, isympy, torchrun, elasticurl, elasticurl_cpp, elastipubsub, plasma-store-server, plasma_store, mako-render, csv-import, markdown-it, orc-memory, orc-scan, timezone-dump, convert-caffe2-to-onnx, convert-onnx-to-caffe2, orc-contents, orc-metadata, orc-statistics, sha256_profile, h5delete, gflags_completions.sh
GITHUB quay.io/biocontainers/corneto singularity registry hpc automated addition for corneto 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config
GITHUB quay.io/biocontainers/corona_lineage_dynamics singularity registry hpc automated addition for corona_lineage_dynamics corona_lineage_dynamics, ta-lib-config, git2, pandoc-lua, pandoc-server, x86_64-conda-linux-gnu.cfg, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, pandoc, hb-info, tjbench
GITHUB quay.io/biocontainers/correlationplus shpc-registry automated BioContainers addition for correlationplus correlationplus, evol, gsd, nc3tonc4, nc4tonc3, ncinfo, prody, numba, pycc, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy
GITHUB quay.io/biocontainers/corset shpc-registry automated BioContainers addition for corset corset, corset_fasta_ID_changer
GITHUB quay.io/biocontainers/corsid shpc-registry automated BioContainers addition for corsid corsid, corsid_a, xgboost, tqdm, chardetect, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/cortex_con shpc-registry automated BioContainers addition for cortex_con cortex_con_31
GITHUB quay.io/biocontainers/cortexpy shpc-registry automated BioContainers addition for cortexpy cortexpy, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/cosg singularity registry hpc automated addition for cosg h5tools_test_utils, h5fuse.sh, scanpy, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, h5delete, numba, natsort, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tqdm
GITHUB quay.io/biocontainers/cosi2 shpc-registry automated BioContainers addition for cosi2 coalescent, get_recomap, recomap_hapmap2, recosimulate, sample_stats_extra, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/cosigt singularity registry hpc automated addition for cosigt cosigt
GITHUB quay.io/biocontainers/cospar singularity registry hpc automated addition for cospar bioservices, gseapy, h5fuse.sh, browse, mpg123, mpg123-id3dump, mpg123-strip, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, libgcrypt-config, mpicalc, yat2m, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, attr, balsam, getfattr, lprodump, lrelease-pro, lupdate-pro
GITHUB quay.io/biocontainers/count_constant_sites shpc-registry automated BioContainers addition for count_constant_sites count_constant_sites
GITHUB quay.io/biocontainers/counterr shpc-registry automated BioContainers addition for counterr counterr, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, jpgicc
GITHUB quay.io/biocontainers/cov-lineages shpc-registry automated BioContainers addition for cov-lineages lineages, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/coverageanomalyscanner singularity registry hpc automated addition for coverageanomalyscanner cas
GITHUB quay.io/biocontainers/coverm shpc-registry automated BioContainers addition for coverm coverm, dashing, remove_minimap2_duplicated_headers, starcode, fastANI, sdust, paftools.js, minimap2, k8, qualfa2fq.pl, xa2multi.pl, bwa, fasta-sanitize.pl, plot-ampliconstats
GITHUB quay.io/biocontainers/covid-spike-classification shpc-registry automated BioContainers addition for covid-spike-classification covid-spike-classification, tracy, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, fasta-sanitize.pl
GITHUB quay.io/biocontainers/covsonar singularity registry hpc automated addition for covsonar mpire-dashboard, sonar, xmlget, xmltext, aaindexextract, abiview, acdc, acdgalaxy, acdlog, acdpretty, acdtable, acdtrace, acdvalid, aligncopy, aligncopypair, antigenic, assemblyget, backtranambig, backtranseq, banana, biosed, btwisted, cachedas, cachedbfetch, cacheebeyesearch, cacheensembl, chaos
GITHUB quay.io/biocontainers/covtobed shpc-registry automated BioContainers addition for covtobed covtobed, bamtools
GITHUB quay.io/biocontainers/cpat shpc-registry automated BioContainers addition for cpat cpat.py, make_hexamer_tab.py, make_logitModel.py, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py
GITHUB quay.io/biocontainers/cpc2 singularity registry hpc automated addition for cpc2 CPC2.py, compress.py, seqio.py, svm-predict, svm-scale, svm-train, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1
GITHUB quay.io/biocontainers/cpgeneprofiler shpc-registry automated BioContainers addition for cpgeneprofiler pdfsig, pdfattach, pdfdetach, pdffonts, pdfimages, pdfinfo, pdfseparate, pdftocairo, pdftohtml, pdftoppm
GITHUB quay.io/biocontainers/cpinsim shpc-registry automated BioContainers addition for cpinsim cpinsim, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/cpstools singularity registry hpc automated addition for cpstools cpstools, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config
GITHUB quay.io/biocontainers/cpt_gffparser shpc-registry automated BioContainers addition for cpt_gffparser f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/cptac shpc-registry automated BioContainers addition for cptac runxlrd.py, flask, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/crabs singularity registry hpc automated addition for crabs crabs, cutadapt, vsearch, igzip, muscle, pbunzip2, pbzcat, pbzip2, pigz, unpigz, f2py3.6, idn2, tqdm, wget, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, opj_compress, opj_decompress, opj_dump, jpgicc
GITHUB quay.io/biocontainers/crabz singularity registry hpc automated addition for crabz crabz
GITHUB quay.io/biocontainers/cramino singularity registry hpc automated addition for cramino cramino
GITHUB quay.io/biocontainers/cramtools shpc-registry automated BioContainers addition for cramtools cramtools, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/craq singularity registry hpc automated addition for craq craq, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, sdust, k8, paftools.js, minimap2, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc
GITHUB quay.io/biocontainers/crass shpc-registry automated BioContainers addition for crass crass, crass-assembler, crisprtools, CreateDOMDocument, DOMCount, DOMPrint, EnumVal, MemParse, PParse, PSVIWriter, Redirect, SAX2Count, SAX2Print
GITHUB quay.io/biocontainers/crb-blast shpc-registry automated BioContainers addition for crb-blast bioruby, br_biofetch.rb, br_bioflat.rb, br_biogetseq.rb, br_pmfetch.rb, bundle, bundler, crb-blast, gdbm_dump, gdbm_load, gdbmtool, build.sh, common.go, rchive.go, setup-deps.log, setup.sh, xtract.go, erb
GITHUB quay.io/biocontainers/crimson shpc-registry automated BioContainers addition for crimson crimson, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/crispector shpc-registry automated BioContainers addition for crispector crispector, fastp, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7
GITHUB quay.io/biocontainers/crispector2 singularity registry hpc automated addition for crispector2 crispector, fastp, igzip, f2py3.7, tqdm, fonttools, pyftmerge, pyftsubset, ttx, brotli, 2to3-3.7, idle3.7, pydoc3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, python3.7, opj_compress, opj_decompress, opj_dump, pyvenv, jpgicc, linkicc, psicc, tificc
GITHUB quay.io/biocontainers/crisper_recognition_tool shpc-registry automated BioContainers addition for crisper_recognition_tool crt, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/crisprbact shpc-registry automated BioContainers addition for crisprbact crisprbact, keyring, pkginfo, poetry, doesitcache, jsonschema, dbus-cleanup-sockets, dbus-daemon, dbus-launch, dbus-monitor, dbus-run-session, dbus-send, dbus-test-tool, dbus-update-activation-environment
GITHUB quay.io/biocontainers/crispresso shpc-registry automated BioContainers addition for crispresso
GITHUB quay.io/biocontainers/crispresso2 shpc-registry automated BioContainers addition for crispresso2 CRISPResso, CRISPRessoAggregate, CRISPRessoBatch, CRISPRessoCompare, CRISPRessoPooled, CRISPRessoPooledWGSCompare, CRISPRessoWGS, flash, trimmomatic, cups-config, ippeveprinter, ipptool, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l
GITHUB quay.io/biocontainers/crispritz shpc-registry automated BioContainers addition for crispritz crispritz.py, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical, bam2bed_sge, bam2bed_sge-float128
GITHUB quay.io/biocontainers/crisprlungo singularity registry hpc automated addition for crisprlungo CRISPResso, CRISPRessoAggregate, CRISPRessoBatch, CRISPRessoCompare, CRISPRessoPooled, CRISPRessoPooledWGSCompare, CRISPRessoWGS, CRISPRlungo, CRISPRlungoBatch, CRISPRlungoCompare, c-index-test, cas-offinder, ccmake, clang, clang++, clang-8, clang-check, clang-cl, clang-cpp, clang-extdef-mapping, clang-format, clang-import-test, clang-offload-bundler, clang-refactor, clang-rename, cmake, cpack, ctest, diagtool, ed2k-link, edonr256-hash, edonr512-hash, git-clang-format, gost12-256-hash, gost12-512-hash, has160-hash, hmaptool, magnet-link, poclcc, rhash, scan-build, scan-view, sfv-hash, tiger-hash, tth-hash, whirlpool-hash, flash, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, tjbench, cutadapt, trimmomatic, igzip, pbunzip2, pbzcat, pbzip2, jpackage, pigz, unpigz
GITHUB quay.io/biocontainers/crisprme shpc-registry automated BioContainers addition for crisprme crispritz.py, crisprme.py, dash-generate-components, gunicorn, renderer, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical, bam2bed_sge, bam2bed_sge-float128
GITHUB quay.io/biocontainers/crnsimulator shpc-registry automated BioContainers addition for crnsimulator crnsimulator, isympy, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc
GITHUB quay.io/biocontainers/crocodeel singularity registry hpc automated addition for crocodeel crocodeel, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tqdm, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc
GITHUB quay.io/biocontainers/cromshell shpc-registry automated BioContainers addition for cromshell cromshell, jq, onig-config, womtool, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer
GITHUB quay.io/biocontainers/cromwell-tools shpc-registry automated BioContainers addition for cromwell-tools cromwell-tools, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, chardetect, 2to3-3.8, idle3.8, pydoc3.8
GITHUB quay.io/biocontainers/cromwell shpc-registry automated BioContainers addition for cromwell
GITHUB quay.io/biocontainers/croo shpc-registry automated BioContainers addition for croo autouri, aws, aws.cmd, aws_bash_completer, aws_completer, aws_zsh_completer.sh, caper, create_instance.sh, croo, miniwdl, pygtail, pyhocon, run_mysql_server_docker.sh, run_mysql_server_singularity.sh, wsdump.py, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, coloredlogs, humanfriendly, xkbcli, jp.py, py.test, pytest
GITHUB quay.io/biocontainers/crossmap shpc-registry automated BioContainers addition for crossmap CrossMap.py, wigToBigWig, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py
GITHUB quay.io/biocontainers/crumble shpc-registry automated BioContainers addition for crumble crumble, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/crussmap singularity registry hpc automated addition for crussmap crussmap
GITHUB quay.io/biocontainers/crux-toolkit shpc-registry automated BioContainers addition for crux-toolkit crux
GITHUB quay.io/biocontainers/cryfa shpc-registry automated BioContainers addition for cryfa cryfa, keygen
GITHUB quay.io/biocontainers/cryptkeeper singularity registry hpc automated addition for cryptkeeper cryptkeeper, ostir, promoter-calculator, rhotermpredict, RNAmultifold, numpy-config, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex, RNAsnoop, RNAfold, Kinfold, RNALfold, RNAaliduplex, RNAalifold, RNAcofold, RNAdistance, RNAduplex
GITHUB quay.io/biocontainers/crypto_typer shpc-registry automated BioContainers addition for crypto_typer crypto_typer, blast_report, blastdb_convert, blastdb_path, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2
GITHUB quay.io/biocontainers/cryptogenotyper shpc-registry automated BioContainers addition for cryptogenotyper cryptogenotyper, clustalw, CA.pm, cacert.pem, clustalw2, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras
GITHUB quay.io/biocontainers/csb shpc-registry automated BioContainers addition for csb csb-bfit, csb-bfite, csb-buildhmm, csb-csfrag, csb-embd, csb-hhfrag, csb-hhsearch, csb-precision, csb-promix, csb-test, qhelpconverter, pylupdate5, pyrcc5, pyuic5, sip, qdoc, gst-device-monitor-1.0, gst-discoverer-1.0, gst-play-1.0, fixqt4headers.pl
GITHUB quay.io/biocontainers/csblast shpc-registry automated BioContainers addition for csblast csblast, csbuild
GITHUB quay.io/biocontainers/cstag-cli singularity registry hpc automated addition for cstag-cli cstag, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/cstag singularity registry hpc automated addition for cstag 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/csvtk shpc-registry automated BioContainers addition for csvtk csvtk
GITHUB quay.io/biocontainers/ctat-lncrna shpc-registry automated BioContainers addition for ctat-lncrna alignTranscripts1.0, lastz, lastz_D, license.txt, liftOver, lncrna, makeWebsite, slncky, slncky.v1.0, my_print_defaults, mysql_config, perror, conda_build.sh, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv
GITHUB quay.io/biocontainers/ctat-metagenomics shpc-registry automated BioContainers addition for ctat-metagenomics centrifuge, centrifuge-BuildSharedSequence.pl, centrifuge-RemoveEmptySequence.pl, centrifuge-RemoveN.pl, centrifuge-build, centrifuge-build-bin, centrifuge-class, centrifuge-compress.pl, centrifuge-download, centrifuge-inspect, centrifuge-inspect-bin, centrifuge-kreport, centrifuge-sort-nt.pl, centrifuge_evaluate.py, centrifuge_simulate_reads.py, metagenomics, tar, CA.pm, cacert.pem, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras, pm-collect
GITHUB quay.io/biocontainers/ctat-mutations shpc-registry automated BioContainers addition for ctat-mutations ctat_mutations, gatk, STAR, STARlong, picard, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii
GITHUB quay.io/biocontainers/ctc-scite singularity registry hpc automated addition for ctc-scite CTC-SCITE
GITHUB quay.io/biocontainers/cthreepo shpc-registry automated BioContainers addition for cthreepo cthreepo, chardetect, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/ctseq shpc-registry automated BioContainers addition for ctseq Bismark_alignment_modes.pdf, NOMe_filtering, _config.yml, bam2nuc, bismark, bismark2bedGraph, bismark2report, bismark2summary, bismark_genome_preparation, bismark_methylation_extractor, compare_HLA.py, compare_HLA.py.bak, compare_HLA_Omixon.py, compare_HLA_Omixon.py.bak, copy_bismark_files_for_release.pl, coverage2cytosine, ctseq, deduplicate_bismark, extract_Omixon_HLA.py, extract_Omixon_HLA.py.bak, extract_exons.py, extract_splice_sites.py, filter_non_conversion, hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, hisatgenotype.py, hisatgenotype_HLA_genotyping_PGs.py, hisatgenotype_HLA_genotyping_PGs.py.bak, hisatgenotype_build_genome.py, hisatgenotype_convert_codis.py, hisatgenotype_convert_codis.py.bak, hisatgenotype_extract_codis_data.py, hisatgenotype_extract_codis_data.py.bak, hisatgenotype_extract_cyp_data.py, hisatgenotype_extract_cyp_data.py.bak, hisatgenotype_extract_reads.py, hisatgenotype_extract_vars.py, hisatgenotype_hla_cyp.py, hisatgenotype_locus.py, hisatgenotype_locus_samples.py, hisatgenotype_locus_samples.py.bak, license.txt, methylation_consistency, run_extract_CP.sh, run_extract_ILMN.sh, run_genotype_build.sh, run_hisat2_build.sh, run_type_CP.sh, test_data.fastq, umi_tools, metadata_conda_debug.yaml, cutadapt, pigz, unpigz, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s
GITHUB quay.io/biocontainers/ctxcore singularity registry hpc automated addition for ctxcore protoc-25.3.0, numpy-config, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, gflags_completions.sh, numba, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin
GITHUB quay.io/biocontainers/ctyper singularity registry hpc automated addition for ctyper ctyper, annot-tsv, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/cufflinks shpc-registry automated BioContainers addition for cufflinks cuffcompare, cuffdiff, cufflinks, cuffmerge, cuffnorm, cuffquant, gffread, gtf_to_sam, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/curare singularity registry hpc automated addition for curare bsdcat, bsdcpio, bsdtar, conda2solv, curare, curare_wizard, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, stone, conda-env, cph, pulptest, cbc, clp, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, snakemake, snakemake-bash-completion
GITHUB quay.io/biocontainers/cured singularity registry hpc automated addition for cured Bifrost, CURED_FindREs.py, CURED_Main.py, dataformat, datasets, mlst, mlst-ST_mini_genomes, mlst-consistency_checker, mlst-download_pub_mlst, mlst-make_blast_db, mlst-show_seqs, unitig-caller, TMalign, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gawk-5.3.0, gbf2fsa, gbf2ref, gm2ranges, gm2segs
GITHUB quay.io/biocontainers/curesim shpc-registry automated BioContainers addition for curesim curesim, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown
GITHUB quay.io/biocontainers/curl shpc-registry automated BioContainers addition for curl curl, curl-config
GITHUB quay.io/biocontainers/curlywhirly shpc-registry automated BioContainers addition for curlywhirly curlywhirly, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer
GITHUB quay.io/biocontainers/curves shpc-registry automated BioContainers addition for curves AddToBox, Canal, Canion, CartHess2FC.py, ChBox, Cur+, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, bondtype, bondtype.orig, car_to_files.py, ceinutil.py, cestats, charmmlipid2amber.py, cpeinutil.py, cphstats, cpinutil.py, cpptraj, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gwh, hcp_getpdb, makeANG_RST, makeDIST_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, pbsa, pdb4amber, prepgen, process_mdout.perl, process_minout.perl, pymdpbsa, pytleap, reduce, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tleap, ucpp, xaLeap, xleap, xparmed, cygdb, cython, cythonize, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/customtkinter singularity registry hpc automated addition for customtkinter 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, python3.1
GITHUB quay.io/biocontainers/cutadapt shpc-registry automated BioContainers addition for cutadapt cutadapt, pigz, unpigz, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7
GITHUB quay.io/biocontainers/cutesv shpc-registry automated BioContainers addition for cutesv cuteSV, vcf_sample_filter.py, vcf_filter.py, vcf_melt, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/cutqc shpc-registry automated BioContainers addition for cutqc cutqc, fastqc_report.Rmd, fastqc_single_report.Rmd, cutadapt, fastqc, igzip, pbunzip2, pbzcat, pbzip2, gawk-5.1.0, awk, gawk, pigz
GITHUB quay.io/biocontainers/cuttlefish shpc-registry automated BioContainers addition for cuttlefish cuttlefish
GITHUB quay.io/biocontainers/cvanmf singularity registry hpc automated addition for cvanmf decompose, rank_select, reapply, regu_select, biom, h5tools_test_utils, idle3.13, pydoc3.13, python3.13, python3.13-config, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, h5fuse.sh, h5delete, numpy-config, py.test, pytest, natsort, tqdm, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer
GITHUB quay.io/biocontainers/cvbio shpc-registry automated BioContainers addition for cvbio cvbio, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/cvlr singularity registry hpc automated addition for cvlr cvlr-cluster, cvlr-meth-of-bam, cvlr-stats.py, cvlrcommon.py, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, htsfile, bgzip, tabix, python3.1, jpgicc, linkicc, psicc, tificc, transicc
GITHUB quay.io/biocontainers/cwl2wdl shpc-registry automated BioContainers addition for cwl2wdl cwl2wdl, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/cwltest shpc-registry automated BioContainers addition for cwltest black, blackd, cwltest, mock-cwl-runner, schema-salad-doc, schema-salad-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, doesitcache, normalizer, 2to3-3.10
GITHUB quay.io/biocontainers/cwltool shpc-registry automated BioContainers addition for cwltool cwltest, cwltool, avro, schema-salad-doc, schema-salad-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, doesitcache, futurize
GITHUB quay.io/biocontainers/cycle_finder singularity registry hpc automated addition for cycle_finder blastn_vdb, cycle_finder, tblastn_vdb, gunzip, gzexe, gzip, trf4.10.0-rc.2.linux64.exe, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zmore, znew, trf, uuid, uuid-config, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454
GITHUB quay.io/biocontainers/cyntenator shpc-registry automated BioContainers addition for cyntenator cyntenator
GITHUB quay.io/biocontainers/cyordereddict shpc-registry automated BioContainers addition for cyordereddict easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5
GITHUB quay.io/biocontainers/cyrcular singularity registry hpc automated addition for cyrcular cyrcular
GITHUB quay.io/biocontainers/cytocad shpc-registry automated BioContainers addition for cytocad cytocad, rfmix2tagore.py, tagore, f2py3.6, rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, fasta-sanitize.pl, shiftBed, plot-ampliconstats, annotateBed
GITHUB quay.io/biocontainers/cytoscape shpc-registry automated BioContainers addition for cytoscape Cytoscape, cytoscape.sh, gen_vmoptions.sh, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell
GITHUB quay.io/biocontainers/cytosnake singularity registry hpc automated addition for cytosnake cytosnake, eido, jsondiff, jsonpatch, jsonpointer, protoc-23.4.0, mamba-package, conda2solv, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, markdown-it, bsdcat, bsdcpio, bsdtar, conda-env, cph, stone, yte, plac_runner.py, docutils, pulptest, cbc, clp, humanfriendly, snakemake, snakemake-bash-completion, jp.py
GITHUB quay.io/biocontainers/cytotrace2-python singularity registry hpc automated addition for cytotrace2-python cytotrace2, torch_shm_manager, pandoc-lua, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, protoc-25.3.0, numpy-config, torchrun, isympy, h5tools_test_utils, pandoc-server, scanpy, convert-caffe2-to-onnx, convert-onnx-to-caffe2, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology
GITHUB quay.io/biocontainers/cyushuffle shpc-registry automated BioContainers addition for cyushuffle 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/cyvcf shpc-registry automated BioContainers addition for cyvcf
GITHUB quay.io/biocontainers/cyvcf2 shpc-registry automated BioContainers addition for cyvcf2 cyvcf2, coloredlogs, humanfriendly, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6
GITHUB quay.io/biocontainers/czlab_perl_lib singularity registry hpc automated addition for czlab_perl_lib bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc, bp_genbank2gff3, bp_index, bp_local_taxonomydb_query, bp_make_mrna_protein, bp_mask_by_search, bp_mrtrans, bp_mutate, bp_nexus2nh, bp_nrdb, bp_oligo_count, bp_process_gadfly, bp_process_sgd, bp_revtrans-motif, bp_search2alnblocks, bp_search2gff
GITHUB quay.io/biocontainers/d4binding singularity registry hpc automated addition for d4binding starcode
GITHUB quay.io/biocontainers/d4tools singularity registry hpc automated addition for d4tools d4tools, starcode
GITHUB quay.io/biocontainers/dadaist2-full shpc-registry automated BioContainers addition for dadaist2-full D2-AbundancesPhyloseq.R, D2-AlphaDivPhyloseq.R, D2-BetaDivPhyloseq.R, D2-FilterPhyloseq.R, D2-checkLibrary.R, D2-checkPhyloseq.R, D2-dada-SE.R, D2-dada-taxonomy.R, D2-dada.R, D2-decipher.R, D2-importPhyloseq.R, D2-updateMetadataPhyloseq.R, dadaist2, dadaist2-addTaxToFasta, dadaist2-alpha, dadaist2-assigntax, dadaist2-crosstalk, dadaist2-dada2fasta, dadaist2-exporter, dadaist2-getdb, dadaist2-importq2, dadaist2-mergeseqs, dadaist2-metadata, dadaist2-mqc-report, dadaist2-normalize, dadaist2-phyloseqCheck, dadaist2-phyloseqMake, dadaist2-taxonomy-binning, dadaist2-taxplot, dadaist2-transposetaxa.py, fqc, fqlen.pl, fu-16Sregion, fu-cov, fu-homocomp, fu-index, fu-multirelabel, fu-nanotags, fu-orf, fu-primers, fu-shred, fu-sw, fu-tabcheck, fu-virfilter, installPackages.R, itsxpress, qax, rhea-alpha.R, rhea-binning.R, rhea-normalize.R, seqfu, clustalo, kmutate.sh, multiqc, runhmm.sh, zip, fastp, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh
GITHUB quay.io/biocontainers/dadaist2 shpc-registry automated BioContainers addition for dadaist2
GITHUB quay.io/biocontainers/dadi shpc-registry automated BioContainers addition for dadi compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, qwebengine_convert_dict
GITHUB quay.io/biocontainers/daisysuite shpc-registry automated BioContainers addition for daisysuite DaisySuite, DaisySuite_example, DaisySuite_setup, DaisySuite_stats, DaisySuite_template, add-score-tags-to-bam, bam-to-alignment-priors, bam2fastq, clever, clever-core, ctk-version, evaluate-sv-predictions, extract-bad-reads, filter-bam, filter-variations, genotyper, gustaf, gustaf_mate_joining, insert-length-histogram, laser, laser-core, laser-recalibrate, mason_frag_sequencing, mason_genome, mason_materializer, mason_methylation, mason_simulator, mason_splicing, mason_variator, mateclever, mateclever-compute-rois, merge-to-vcf, merge-variation-lists, multiline-to-xa, plot-insert-size-distribution, postprocess-predictions, precompute-distributions, read-group-stats, remove-redundant-variations, sak, split-priors-by-chromosome, split-reads, stellar, vcf-to-deletionlist, yara_indexer, yara_mapper, stone, snakemake, snakemake-bash-completion, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config
GITHUB quay.io/biocontainers/dajin2 singularity registry hpc automated addition for dajin2 DAJIN2, kaleido, mathjax-path, waitress-serve, minimap2.py, flask, certutil, nspr-config, nss-config, pk12util, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/daligner shpc-registry automated BioContainers addition for daligner HPC.daligner, LAcat, LAcheck, LAdump, LAindex, LAmerge, LAshow, LAsort, LAsplit, daligner
GITHUB quay.io/biocontainers/damageprofiler shpc-registry automated BioContainers addition for damageprofiler damageprofiler, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/damasker shpc-registry automated BioContainers addition for damasker HPC.REPmask, HPC.TANmask, REPmask, TANmask, datander
GITHUB quay.io/biocontainers/damidseq_pipeline shpc-registry automated BioContainers addition for damidseq_pipeline damidseq_pipeline, gatc.track.maker.pl, gff2tdf.pl, igvtools, varfilter.py, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, jaotc
GITHUB quay.io/biocontainers/dammet shpc-registry automated BioContainers addition for dammet DamMet, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/dammit shpc-registry automated BioContainers addition for dammit SplicedAlignment.pm, TransDecoder.LongOrfs, TransDecoder.Predict, aa2nonred.pl, abundance-dist-single.py, abundance-dist.py, annotate-partitions.py, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, autoRun.pathInfo, bam2wig, bamToWig.py, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, cdna_alignment_orf_to_genome_orf.pl, cegma2gff.pl, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, compare_masking.pl, compileSpliceCands, computeFlankingRegion.pl, compute_base_probs.pl, count-median.py, createAugustusJoblist.pl, dammit, del_from_prfl.pl, do-partition.py, doit, espoca, evalCGP.pl, eval_dualdecomp.pl, eval_multi_gtf.pl, exclude_similar_proteins.pl, exonerate2hints.pl, exoniphyDb2hints.pl, extract-long-sequences.py, extract-paired-reads.py, extract-partitions.py, extractTranscriptEnds.pl, fasta_prot_checker.pl, fastq-interleave, fastq-to-fasta.py, ffindex_resume.pl, filter-abund-single.py, filter-abund.py, filter-ppx.pl, filter-stoptags.py, filterGenes.pl, filterGenesIn.pl, filterGenesIn_mRNAname.pl, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, find-knots.py, findGffNamesInFasta.pl, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, gene_list_to_gff.pl, generate_plot, generate_plot.py, getAnnoFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, getSeq, get_FL_accs.pl, get_longest_ORF_per_transcript.pl, get_top_longest_fasta_entries.pl, gff2gbSmallDNA.pl, gff2ps_mycustom, gff3_file_to_bed.pl, gff3_file_to_proteins.pl, gff3_gene_to_gtf_format.pl, gffGetmRNA.pl, gp2othergp.pl, gtf2aa.pl, gtf2gff.pl, gtf_genome_to_cdna_fasta.pl, gtf_to_alignment_gff3.pl, gtf_to_bed.pl, gth2gtf.pl, hal2maf_split.pl, helpMod.pm, interleave-reads.py, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, last-dotplot, last-map-probs, last-merge-batches, last-pair-probs, last-postmask, last-split, last-split8, last-train, lastal, lastal8, lastdb, lastdb8, load-graph.py, load-into-counting.py, load2sqlitedb, lp_solve, maf-convert, maf-cut, maf-join, maf-sort, maf-swap, maf2conswig.pl, make-initial-stoptags.py, makeMatchLists.pl, makeUtrTrainingSet.pl, maskNregions.pl, merge-partitions.py, merge_masking.pl, moveParameters.pl, msa2prfl.pl, new_species.pl, normalize-by-median.py, nr_ORFs_gff3.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parallel-fasta, parallel-fastq, parseSim4Output.pl, partition-graph.py, partition_gtf2gb.pl, pasapolyA2hints.pl, peptides2alternatives.pl, peptides2hints.pl, pfam_runner.pl, phastconsDB2hints.pl, polyA2hints.pl, prints2prfl.pl, pslMap.pl, randomSplit.pl, ratewig.pl, readstats.py, refine_gff3_group_iso_strip_utrs.pl, refine_hexamer_scores.pl, remove_eclipsed_ORFs.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, run_BUSCO.py, run_busco, samMap.pl, sample-reads-randomly.py, scipiogff2gff.pl, score_CDS_likelihood_all_6_frames.pl, select_best_ORFs_per_transcript.pl, seq_n_baseprobs_to_loglikelihood_vals.pl, setStopCodonFreqs.pl, shmlast, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, split-paired-reads.py, splitMfasta.pl, split_wiggle.pl, start_codon_refinement.pl, summarizeACGTcontent.pl, train_start_PWM.pl, transMap2hints.pl, trim-low-abund.py, unique-kmers.py, uniquePeptides.pl, uri_unescape.pl, utrgff2gbrowse.pl, utrrnaseq, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, yaml2gff.1.4.pl, augustus, bam2hints, etraining, fastBlockSearch, filterBam, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign, build.sh
GITHUB quay.io/biocontainers/danbing-tk singularity registry hpc automated addition for danbing-tk danbing-tk, danbing-tk-pred, genPanKmers, ktools, vntr2kmers_thread
GITHUB quay.io/biocontainers/danpos shpc-registry automated BioContainers addition for danpos danpos.py, functions.py, lib.py, reads.py, summits.py, wig.py, wigs.py, wiq.py, f2py2, f2py2.7, bcftools, vcfutils.pl, python2-config, python2.7-config, python2, python2.7, idle, python-config
GITHUB quay.io/biocontainers/dapcy singularity registry hpc automated addition for dapcy qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, protoc-25.3.0, dask, cyvcf2, annot-tsv, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, dask-scheduler, dask-ssh, dask-worker, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, bokeh
GITHUB quay.io/biocontainers/dart shpc-registry automated BioContainers addition for dart bwt_index, dart
GITHUB quay.io/biocontainers/das_tool shpc-registry automated BioContainers addition for das_tool Contigs2Bin_to_Fasta.sh, DAS_Tool, Fasta_to_Contig2Bin.sh, pullseq, seqdiff, erb, gem, irb, rake, rdoc, ri, ruby, funzip, unzipsfx, zipgrep
GITHUB quay.io/biocontainers/dascrubber shpc-registry automated BioContainers addition for dascrubber DASedit, DASmap, DASpatch, DASqv, DASrealign, DAStrim, REPqv, REPtrim
GITHUB quay.io/biocontainers/dashing shpc-registry automated BioContainers addition for dashing dashing
GITHUB quay.io/biocontainers/dastk singularity registry hpc automated addition for dastk barcode_plot, differential_md_score, ma_plot, process_atac, tf_intersect, tf_result_explanations, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap, groupBy
GITHUB quay.io/biocontainers/data_hacks shpc-registry automated BioContainers addition for data_hacks bar_chart.py, histogram.py, ninety_five_percent.py, run_for.py, sample.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/datafunk shpc-registry automated BioContainers addition for datafunk cchardetect, datafunk, datapackage, jsonpointer, tableschema, tabulator, unidecode, runxlrd.py, jp.py, jsonschema, f2py3.8, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8
GITHUB quay.io/biocontainers/datamash shpc-registry automated BioContainers addition for datamash datamash
GITHUB quay.io/biocontainers/datavzrd singularity registry hpc automated addition for datavzrd datavzrd
GITHUB quay.io/biocontainers/datma shpc-registry automated BioContainers addition for datma assembly_annotation_tool.py, assembly_annotation_tool_seq.py, binning, binning_tool.py, checkm, clame, datma.py, datma_seq.py, exportTools.sh, filterQuality.py, finalReport.py, finalReport2.py, flash2, genFm9, general.py, icarus.py, kaiju, kaiju-addTaxonNames, kaiju-convertMAR.py, kaiju-convertNR, kaiju-excluded-accessions.txt, kaiju-gbk2faa.pl, kaiju-makedb, kaiju-mergeOutputs, kaiju-mkbwt, kaiju-mkfmi, kaiju-multi, kaiju-taxonlistEuk.tsv, kaiju2krona, kaiju2table, kaijup, kaijux, ktClassifyHits, ktImportHits, map_genFm9.py, mapping, mergeNotCombined, merge_tool.py, metaquast, metaquast.py, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, rapifilt, rdp_classifier, removal_tool.py, runDATMA.sh, selectFasta, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, circos, circos.exe, compile.bat, compile.make, gddiag, glimmerhmm, glimmhmm.pl
GITHUB quay.io/biocontainers/dawg shpc-registry automated BioContainers addition for dawg dawg, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/dazz_db shpc-registry automated BioContainers addition for dazz_db Catrack, DAM2fasta, DB2arrow, DB2fasta, DB2quiva, DBdump, DBdust, DBrm, DBshow, DBsplit, DBstats, DBtrim, DBwipe, arrow2DB, fasta2DAM, fasta2DB, quiva2DB, rangen, simulator
GITHUB quay.io/biocontainers/dbcan singularity registry hpc automated addition for dbcan hmmscan_parser.py, run_dbcan, diamond, natsort, prodigal, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn, esl-seqrange, esl-seqstat, esl-sfetch, esl-shuffle, esl-ssdraw, esl-translate
GITHUB quay.io/biocontainers/dbcanlight singularity registry hpc automated addition for dbcanlight dbcanLight, dbcanLight-hmmparser, dbcanLight-subparser, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/dbghaplo singularity registry hpc automated addition for dbghaplo dbghaplo, haplotag_bam, lofreq, lofreq2_call_pparallel.py, lofreq2_indel_ovlp.py, lofreq2_somatic.py, lofreq2_vcfplot.py, run_dbghaplo_pipeline, write_contig_headers_vcf.py, annot-tsv, minimap2, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl
GITHUB quay.io/biocontainers/dbgraph shpc-registry automated BioContainers addition for dbgraph DBGraph2Pro, DBGraphPep2Pro
GITHUB quay.io/biocontainers/dca shpc-registry automated BioContainers addition for dca dca, dunamai, hyperopt-mongo-worker, zstdcat, scanpy, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, pt2to3, ptdump, ptrepack, pttree
GITHUB quay.io/biocontainers/dcc singularity registry hpc automated addition for dcc DCC, htseq-count-barcodes, htseq-count, htseq-qa, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc, transicc
GITHUB quay.io/biocontainers/dcmtk shpc-registry automated BioContainers addition for dcmtk cda2dcm, dcm2json, dcm2pdf, dcm2pnm, dcm2xml, dcmcjpeg, dcmcjpls, dcmconv, dcmcrle, dcmdata_tests, dcmdjpeg, dcmdjpls, dcmdrle, dcmdspfn, dcmdump, dcmect_tests, dcmfg_tests, dcmftest, dcmgpdir, dcmicmp, dcmiod_tests, dcmj2pnm, dcml2pnm, dcmmkcrv, dcmmkdir, dcmmklut, dcmnet_tests, dcmodify, dcmp2pgm, dcmprscp, dcmprscu, dcmpschk, dcmpsmk, dcmpsprt, dcmpsrcv, dcmpssnd, dcmqridx, dcmqrscp, dcmqrti, dcmquant, dcmrecv, dcmrt_tests, dcmscale, dcmseg_tests, dcmsend, dcmsign, dcmsr_tests, dcmtls_tests, dcod2lum, dconvlum, drtdump, drttest, dsr2html, dsr2xml, dsrdump, dump2dcm, echoscu, findscu, getscu, img2dcm, mkreport, movescu, msgserv, ofstd_tests, pdf2dcm, stl2dcm, storescp, storescu, termscu, wlmscpfs, wltest, xml2dcm, xml2dsr, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set
GITHUB quay.io/biocontainers/dcplib shpc-registry automated BioContainers addition for dcplib jp.py, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py
GITHUB quay.io/biocontainers/ddipy shpc-registry automated BioContainers addition for ddipy omicsdi, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/ddocent shpc-registry automated BioContainers addition for ddocent ErrorCount.sh, RefMapOpt.sh, ReferenceOpt.sh, Rename_SequenceFiles.sh, dDocent, dDocent_filters, filter_hwe_by_pop.pl, filter_missing_ind.sh, mawk, pear, pearRM, pop_missing_filter.sh, rainbow, remake_reference.sh, remove.bad.hap.loci.sh, sam_add_rg.pl, select_all_rbcontig.pl, select_all_rbcontig.pl.bak, select_best_rbcontig.pl, select_best_rbcontig.pl.bak, select_best_rbcontig_plus_read1.pl, select_best_rbcontig_plus_read1.pl.bak, select_sec_rbcontig.pl, select_sec_rbcontig.pl.bak, split_ref_by_bai_datasize.py, update_version.sh, vcftools, fill-aa, fill-an-ac, fill-fs, fill-ref-md5, vcf-annotate, vcf-compare, vcf-concat, vcf-consensus, vcf-contrast, vcf-convert
GITHUB quay.io/biocontainers/ddqc singularity registry hpc automated addition for ddqc cllayerinfo, demuxEM, pegasus, pegasusio, protoc-28.3.0, torchfrtrace, wordcloud_cli, loompy, pybind11-config, torch_shm_manager, vba_extract.py, isympy, torchrun, igraph, jwebserver, h5tools_test_utils, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info
GITHUB quay.io/biocontainers/ddrage shpc-registry automated BioContainers addition for ddrage
GITHUB quay.io/biocontainers/deacon singularity registry hpc automated addition for deacon deacon
GITHUB quay.io/biocontainers/deap shpc-registry automated BioContainers addition for deap curve_keygen, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc
GITHUB quay.io/biocontainers/debarcer shpc-registry automated BioContainers addition for debarcer debarcer, pygal_gen.py, f2py3.7, img2webp, cwebp, dwebp, gif2webp, opj_compress, opj_decompress, opj_dump, 2to3-3.7, idle3.7
GITHUB quay.io/biocontainers/deblur shpc-registry automated BioContainers addition for deblur deblur, indexdb_rna, sortmerna, biom, vsearch, doesitcache, ipython3, ipython, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi
GITHUB quay.io/biocontainers/debreak singularity registry hpc automated addition for debreak bsalign, complexsv.py, debreak, debreak_allpoa.py, debreak_detect.py, debreak_genotype.py, debreak_merge.py, debreak_merge_cluster.py, debreak_merge_contig.py, debreak_rescuedupfromins.py, debreak_rescuelargeins.py, debreak_resdup_selfalignment.py, debreak_writevcf.py, genefusion.py, wtdbg-cns, wtdbg2, wtpoa-cns, paftools.js, minimap2, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim, wgsim_eval.pl, samtools, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/debwt shpc-registry automated BioContainers addition for debwt deBWT
GITHUB quay.io/biocontainers/dechat singularity registry hpc automated addition for dechat dechat, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp, h5perf_serial, h5redeploy, h5repack, h5repart, h5stat, h5unjam, h5dump, h5cc
GITHUB quay.io/biocontainers/decifer shpc-registry automated BioContainers addition for decifer decifer, dimacs-solver, dimacs-to-lgf, fitbeta, generatestatetrees, lemon-0.x-to-1.x.sh, lgf-gen, mergestatetrees, cbc, clp, glpsol, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress
GITHUB quay.io/biocontainers/decom singularity registry hpc automated addition for decom cmtime, decOM, decOM-CV, decOM-LOO, decOM-MST, decOM-aOralOut, decOM-format, elastipubsub5, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, io_demo, kaleido, mathjax-path, mckey, mqtt5_app, mqtt5_canary, mqtt5canary, opj_decompress, protoc-23.4.0, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, scalar, ucmatose, ucx_info, ucx_perftest, ucx_read_profile, udaddy, udpong, dask, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, elasticurl, elasticurl_cpp, elastipubsub, csv-import, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, dask-scheduler, dask-ssh, dask-worker
GITHUB quay.io/biocontainers/decoupler singularity registry hpc automated addition for decoupler h5delete, aec, f2py3.11, numba, natsort, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tqdm, brotli, normalizer, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam
GITHUB quay.io/biocontainers/decoypyrat shpc-registry automated BioContainers addition for decoypyrat decoypyrat, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/dedup shpc-registry automated BioContainers addition for dedup dedup, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/deepac shpc-registry automated BioContainers addition for deepac deepac, theano-cache, theano-nose, freeze_graph, mako-render, tf_upgrade_v2, compile-et.pl, prerr.properties, tflite_convert, saved_model_cli, toco
GITHUB quay.io/biocontainers/deepaccess shpc-registry automated BioContainers addition for deepaccess deepaccess, import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2
GITHUB quay.io/biocontainers/deepaclive shpc-registry automated BioContainers addition for deepaclive deepac, deepac-live, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng
GITHUB quay.io/biocontainers/deepacstrain shpc-registry automated BioContainers addition for deepacstrain deepac, deepac-strain, pyjwt, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng
GITHUB quay.io/biocontainers/deepacvir shpc-registry automated BioContainers addition for deepacvir deepac, deepac-vir, pyjwt, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng
GITHUB quay.io/biocontainers/deeparg shpc-registry automated BioContainers addition for deeparg deeparg, theano-test, theano-cache, theano-nose, ete3, diamond, tabulate, qhelpconverter, f2py2, f2py2.7, idn2, qwebengine_convert_dict
GITHUB quay.io/biocontainers/deepbgc shpc-registry automated BioContainers addition for deepbgc deepbgc, g-ir-doc-tool, theano-cache, theano-nose, freeze_graph, mako-render, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner
GITHUB quay.io/biocontainers/deepbinner shpc-registry automated BioContainers addition for deepbinner deepbinner, g-ir-doc-tool, theano-cache, theano-nose, freeze_graph, mako-render, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner
GITHUB quay.io/biocontainers/deepchopper-cli singularity registry hpc automated addition for deepchopper-cli deepchopper-chop, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config
GITHUB quay.io/biocontainers/deepdetails singularity registry hpc automated addition for deepdetails deepdetails, protoc-29.3.0, protoc-gen-upb, protoc-gen-upb-29.3.0, protoc-gen-upb_minitable, protoc-gen-upb_minitable-29.3.0, protoc-gen-upbdefs, protoc-gen-upbdefs-29.3.0, torchfrtrace, wandb, wb, bedGraphToBigWig, pybind11-config, torch_shm_manager, isympy, torchrun, h5tools_test_utils, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, tensorboard, vcf_sample_filter.py, h5fuse.sh, vcf_filter.py, vcf_melt, my_print_defaults, mysql_config, perror, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir
GITHUB quay.io/biocontainers/deepdirect singularity registry hpc automated addition for deepdirect deepdirect, flatc, h5fuse.sh, import_pb_to_tensorboard, h5delete, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, markdown_py, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, tjbench
GITHUB quay.io/biocontainers/deepfplearn singularity registry hpc automated addition for deepfplearn dfpl, shortuuid, wandb, wb, h5delete, import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, aec, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, markdown_py, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify
GITHUB quay.io/biocontainers/deeplc shpc-registry automated BioContainers addition for deeplc deeplc, deeplc-gui, import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2
GITHUB quay.io/biocontainers/deeplcretrainer singularity registry hpc automated addition for deeplcretrainer 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1
GITHUB quay.io/biocontainers/deeplift shpc-registry automated BioContainers addition for deeplift f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/deepmased shpc-registry automated BioContainers addition for deepmased DeepMAsED, theano-cache, theano-nose, estimator_ckpt_converter, mako-render, tf_upgrade_v2, iptest3, tflite_convert, saved_model_cli, toco, toco_from_protos
GITHUB quay.io/biocontainers/deepmedic shpc-registry automated BioContainers addition for deepmedic deepMedicRun, nib-dicomfs, nib-diff, nib-ls, nib-nifti-dx, nib-tck2trk, nib-trk2tck, parrec2nii, ppserver.py, unit2, theano-cache, theano-nose, mako-render, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7
GITHUB quay.io/biocontainers/deepmei singularity registry hpc automated addition for deepmei bigRmskAlignBed.as, bigRmskBed.as, combineRMFiles.pl, deepmeiv1, makeclusterdb, maskFile.pl, renumberRMFiles.pl, rmToTrackHub.pl, RM2Bed.py, buildRMLibFromEMBL.pl, buildSummary.pl, wublastToCrossmatch.pl, DupMasker, ProcessRepeats, RepeatMasker, RepeatProteinMask, calcDivergenceFromAlign.pl, createRepeatLandscape.pl, dupliconToSVG.pl, getRepeatMaskerBatch.pl, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, trfMask, rmblastn, trf4.10.0-rc.2.linux64.exe, blast_report, blastdb_convert, blastdb_path, trf, metadata_conda_debug.yaml, import_pb_to_tensorboard, estimator_ckpt_converter
GITHUB quay.io/biocontainers/deepmicro singularity registry hpc automated addition for deepmicro DM.py, DNN_models.py, exception_handle.py, flatc, h5delete, import_pb_to_tensorboard, aec, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tensorboard, markdown_py, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, protoc
GITHUB quay.io/biocontainers/deepmod shpc-registry automated BioContainers addition for deepmod DeepMod.py, cal_EcoliDetPerf.py, generate_motif_pos.py, hm_cluster_predict.py, sum_chr_mod.py, freeze_graph, saved_model_cli, toco, toco_from_protos, tensorboard, markdown_py, sdust, paftools.js, minimap2, k8
GITHUB quay.io/biocontainers/deepnog shpc-registry automated BioContainers addition for deepnog deepnog, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, tensorboard, markdown_py, protoc, tqdm, f2py3.7, 2to3-3.7, idle3.7
GITHUB quay.io/biocontainers/deepsig shpc-registry automated BioContainers addition for deepsig deepsig, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, pyrsa-decrypt, pyrsa-encrypt
GITHUB quay.io/biocontainers/deepsignal-plant shpc-registry automated BioContainers addition for deepsignal-plant deepsignal_plant, torchrun, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, futurize, pasteurize, f2py3.9, h5clear, h5format_convert, h5watch, h5fc
GITHUB quay.io/biocontainers/deepstats shpc-registry automated BioContainers addition for deepstats dsCompareCurves, dsComputeBEDDensity, dsComputeGCCoverage, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run, iptest3, curve_keygen
GITHUB quay.io/biocontainers/deepsvr shpc-registry automated BioContainers addition for deepsvr bam-readcount, convert_zero_one_based, deepsvr, pbr, theano-cache, theano-nose, mako-render, perl5.22.0, tensorboard, c2ph, pstruct, qhelpconverter, protoc
GITHUB quay.io/biocontainers/deeptools shpc-registry automated BioContainers addition for deeptools alignmentSieve, bamCompare, bamCoverage, bamPEFragmentSize, bigwigCompare, computeGCBias, computeMatrix, computeMatrixOperations, correctGCBias, deeptools, estimateReadFiltering, estimateScaleFactor, multiBamSummary, multiBigwigSummary, plotCorrelation, plotCoverage, plotEnrichment, plotFingerprint, plotHeatmap, plotPCA, plotProfile, g-ir-doc-tool, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, jupyter-trust, jupyter, jupyter-migrate, jupyter-troubleshoot
GITHUB quay.io/biocontainers/deeptoolsintervals shpc-registry automated BioContainers addition for deeptoolsintervals python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/deepvariant shpc-registry automated BioContainers addition for deepvariant bq, docker-credential-gcloud, dv_call_variants.py, dv_make_examples.py, dv_postprocess_variants.py, gcloud, gsutil, funzip, unzipsfx, zipgrep, zipinfo, freeze_graph, google-oauthlib-tool, unzip, clhsdb, hsdb
GITHUB quay.io/biocontainers/defense-finder singularity registry hpc automated addition for defense-finder defense-finder, macsyconfig, macsydata, macsyfinder, macsymerge, macsyprofile, macsysplit, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn, esl-seqrange, esl-seqstat, esl-sfetch, esl-shuffle, esl-ssdraw, esl-translate, esl-weight, esl-afetch, esl-reformat
GITHUB quay.io/biocontainers/defiant shpc-registry automated BioContainers addition for defiant defiant, roi
GITHUB quay.io/biocontainers/degenotate singularity registry hpc automated addition for degenotate degenotate.py, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/dehomopolymerate shpc-registry automated BioContainers addition for dehomopolymerate dehomopolymerate
GITHUB quay.io/biocontainers/delegation shpc-registry automated BioContainers addition for delegation 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/delly shpc-registry automated BioContainers addition for delly delly, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/deltabs shpc-registry automated BioContainers addition for deltabs buildCustomModels.pl, deltaBS.pl, giffilter, gifsponge, gifecho, gifinto, gdlib-config, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml
GITHUB quay.io/biocontainers/deltamsi singularity registry hpc automated addition for deltamsi DeltaMSI, tqdm, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc, transicc
GITHUB quay.io/biocontainers/deltapd shpc-registry automated BioContainers addition for deltapd attr, balsam, deltapd, esdcompat, getfattr, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, lprodump, lrelease-pro, lupdate-pro, meshdebug, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set
GITHUB quay.io/biocontainers/demultiplexer singularity registry hpc automated addition for demultiplexer demultiplexer, psghelp, psgissue, psgmain, psgsettings, psgupgrade, psgver, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/demuxem shpc-registry automated BioContainers addition for demuxem demuxEM, pegasusio, natsort, mirror_server, mirror_server_stop, fonttools, pyftmerge, pyftsubset, ttx, brotli, img2webp, cwebp
GITHUB quay.io/biocontainers/demuxlet shpc-registry automated BioContainers addition for demuxlet demuxlet, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats
GITHUB quay.io/biocontainers/dendropy shpc-registry automated BioContainers addition for dendropy dendropy-format, sumlabels.py, sumtrees.py, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/denovogear shpc-registry automated BioContainers addition for denovogear dng, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5
GITHUB quay.io/biocontainers/deploid shpc-registry automated BioContainers addition for deploid dEploid, dEploid_dbg
GITHUB quay.io/biocontainers/derip2 singularity registry hpc automated addition for derip2 derip2, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, tqdm, fonttools, pyftmerge, pyftsubset, ttx, brotli, tjbench, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, opj_compress, opj_decompress, opj_dump
GITHUB quay.io/biocontainers/derna singularity registry hpc automated addition for derna derna
GITHUB quay.io/biocontainers/desalt shpc-registry automated BioContainers addition for desalt Annotation_Load.py, deBGA, deSALT
GITHUB quay.io/biocontainers/desman shpc-registry automated BioContainers addition for desman AddLengths.pl, CalcDelta.py, CalcGeneCov.py, ClassifyContigNR.py, ClusterMeanCov.py, Collate.pl, CombineTau.pl, CompAssign.py, ExtractCogs.py, ExtractCountFreqGenes.py, ExtractCountFreqP.pl, ExtractGenes.py, Filter.pl, GeneAssign.py, GetVariants.py, GetVariantsCore.py, GetVariantsEta.py, LabelSMap.pl, LengthFilter.py, Lengths.py, MapCogBack.pl, MapGHeader.pl, NormGeneCounts.py, PlotDev.R, PlotLL.R, ReverseStrand.pl, Select.sh, SelectClusterCogs.pl, SelectContigsPos.pl, SelectGene.py, SplitClusters.pl, TauFasta.pl, Variant_Filter.py, contig_read_count_per_genome.py, desman, desmanflow.nf, extract_species_contigs.py, gene_read_count_per_genome.py, get_elite_range.py, pileups_to_freq_table.py, resolvenhap.py, runDesman.sh, taucomp.py, validateSNP.py, validateSNP2.py, validateSNP3.py, write_strain_fasta.py, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py
GITHUB quay.io/biocontainers/detonate shpc-registry automated BioContainers addition for detonate ref-eval, ref-eval-estimate-true-assembly, rsem-build-read-index, rsem-eval-calculate-score, rsem-eval-estimate-transcript-length-distribution, rsem-eval-run-em, rsem-extract-reference-transcripts, rsem-parse-alignments, rsem-plot-model, rsem-preref, rsem-sam-validator, rsem-scan-for-paired-end-reads, rsem-simulate-reads, rsem-synthesis-reference-transcripts, rsem_perl_utils.pm, varfilter.py, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, perl5.26.2, ace2sam
GITHUB quay.io/biocontainers/devider singularity registry hpc automated addition for devider devider, haplotag_bam, lofreq, lofreq2_call_pparallel.py, lofreq2_indel_ovlp.py, lofreq2_somatic.py, lofreq2_vcfplot.py, run_devider_pipeline, write_contig_headers_vcf.py, annot-tsv, sdust, paftools.js, k8, minimap2, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl
GITHUB quay.io/biocontainers/dextractor shpc-registry automated BioContainers addition for dextractor dex2DB, dexar, dexqv, dexta, dextract, undexar, undexqv, undexta, mirror_server, mirror_server_stop, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy
GITHUB quay.io/biocontainers/dfam shpc-registry automated BioContainers addition for dfam DateRepeats, DupMasker, ProcessRepeats, RM2Bed.py, RepeatMasker, RepeatProteinMask, buildRMLibFromEMBL.pl, buildSummary.pl, calcDivergenceFromAlign.pl, createRepeatLandscape.pl, dfamscan.pl, download-dfam.py, dupliconToSVG.pl, getRepeatMaskerBatch.pl, queryRepeatDatabase.pl, queryTaxonomyDatabase.pl, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, trfMask, wublastToCrossmatch.pl, rmblastn, trf4.10.0-rc.2.linux64.exe, trf, blast_report, blastdb_convert, blastdb_path, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv
GITHUB quay.io/biocontainers/dfast shpc-registry automated BioContainers addition for dfast dfast, dfast_file_downloader.py, file_downloader.py, ghostx, mga, blast_report, blastdb_convert, blastdb_path, aragorn, barrnap, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash
GITHUB quay.io/biocontainers/dfast_qc shpc-registry automated BioContainers addition for dfast_qc attr, balsam, checkm, dfast_qc, dqc_admin_tools.py, dqc_initial_setup.sh, esdcompat, getfattr, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, lprodump, lrelease-pro, lupdate-pro, meshdebug, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, pulseaudio, pwiz.py, qmlformat, qmltime, qmltyperegistrar, qpaeq, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set
GITHUB quay.io/biocontainers/dgenies shpc-registry automated BioContainers addition for dgenies dgenies, pbr, flask, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, markdown_py, fonttools
GITHUB quay.io/biocontainers/dia_umpire shpc-registry automated BioContainers addition for dia_umpire dia_umpire_quant, dia_umpire_se, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/dialign-tx shpc-registry automated BioContainers addition for dialign-tx dialign-tx
GITHUB quay.io/biocontainers/dialign2 shpc-registry automated BioContainers addition for dialign2 dialign2-2
GITHUB quay.io/biocontainers/diamond shpc-registry automated BioContainers addition for diamond diamond
GITHUB quay.io/biocontainers/diamond_add_taxonomy shpc-registry automated BioContainers addition for diamond_add_taxonomy
GITHUB quay.io/biocontainers/diapysef shpc-registry automated BioContainers addition for diapysef annotate_mq_ionmobility.py, convertTDFtoMzML.py, create_library.py, get_dia_windows.py, high_precision_irt.py, plot_dia_windows.py, svm-predict, svm-scale, svm-train, CreateDOMDocument, DOMCount, DOMPrint, EnumVal, MemParse, PParse, PSVIWriter
GITHUB quay.io/biocontainers/dicey shpc-registry automated BioContainers addition for dicey dicey, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/diego shpc-registry automated BioContainers addition for diego HTseq2DIEGO.pl, diego.py, gfftoDIEGObed.pl, pre_STAR.py, pre_segemehl.pl, pre_std.py, pre_tophat.pl, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed
GITHUB quay.io/biocontainers/difcover singularity registry hpc automated addition for difcover convert_exp_to_dec_in_unionbed.sh, from_DNAcopyout_to_p_fragments.sh, from_bams_to_unionbed.sh, from_ratio_per_window__to__DNAcopy_output.sh, from_unionbed_to_ratio_per_window_CC0, generate_DNAcopyout_len_histogram.sh, generate_DNAcopyout_len_vs_scores_histogram_bin0.5.sh, get_DNAcopyout_with_length_of_intervals.sh, run_DNAcopy_from_bash.R, run_difcover.sh, annot-tsv, shiftBed, hb-info, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap, groupBy, intersectBed, linksBed, mapBed, maskFastaFromBed
GITHUB quay.io/biocontainers/diffacto shpc-registry automated BioContainers addition for diffacto diffacto, xslt-config, xsltproc, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9
GITHUB quay.io/biocontainers/dig2 shpc-registry automated BioContainers addition for dig2 dig2
GITHUB quay.io/biocontainers/digestiflow-cli shpc-registry automated BioContainers addition for digestiflow-cli digestiflow-cli
GITHUB quay.io/biocontainers/digestiflow-demux shpc-registry automated BioContainers addition for digestiflow-demux digestiflow-demux, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, coloredlogs, humanfriendly, snakemake
GITHUB quay.io/biocontainers/dimet singularity registry hpc automated addition for dimet dotenv, pygrun, coverage, f2py3.11, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc, python3.1
GITHUB quay.io/biocontainers/dimspy shpc-registry automated BioContainers addition for dimspy csc, csc-dim, csi, dimspy, illinkanalyzer, monograph, nunit-console, nunit-console2, nunit-console4, vbc, mono-package-runtime, sgen-grep-binprot, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr
GITHUB quay.io/biocontainers/dinamo shpc-registry automated BioContainers addition for dinamo dinamo
GITHUB quay.io/biocontainers/dinf singularity registry hpc automated addition for dinf demes, demesdraw, dinf, dinf-plot, msp, mspms, tskit, cyvcf2, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, cmark, get_objgraph, undill, coloredlogs, humanfriendly, jsonschema, protoc, pygmentize, fonttools, pyftmerge, pyftsubset, ttx, brotli, futurize, pasteurize, f2py3.10, img2webp
GITHUB quay.io/biocontainers/dingii singularity registry hpc automated addition for dingii dingII, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config
GITHUB quay.io/biocontainers/dinopy shpc-registry automated BioContainers addition for dinopy f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/dinosaur shpc-registry automated BioContainers addition for dinosaur dinosaur, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/dipcall shpc-registry automated BioContainers addition for dipcall bedtk, dipcall-aux.js, htsbox, meryl-analyze, meryl-check, meryl-import, meryl-lookup, meryl-simple, run-dipcall, unimap, winnowmap, meryl, perl5.32.0, sdust, paftools.js, minimap2, k8, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl
GITHUB quay.io/biocontainers/diphase singularity registry hpc automated addition for diphase eval.py, phasing, pipeline.py, plot.py, preprocessing.py, tools.py, util.py, qualfa2fq.pl, xa2multi.pl, bwa, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim, wgsim_eval.pl, samtools
GITHUB quay.io/biocontainers/dirseq singularity registry hpc automated addition for dirseq bioruby, br_biofetch.rb, br_bioflat.rb, br_biogetseq.rb, br_pmfetch.rb, dirseq, varfilter.py, erb, gem, irb, rake, rdoc, ri, ruby, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap
GITHUB quay.io/biocontainers/discasm shpc-registry automated BioContainers addition for discasm DISCASM, PtR, Trinity, TrinityStats.pl, Trinity_gene_splice_modeler.py, abundance_estimates_to_matrix.pl, align_and_estimate_abundance.pl, analyze_blastPlus_topHit_coverage.pl, analyze_diff_expr.pl, contig_ExN50_statistic.pl, define_clusters_by_cutting_tree.pl, extract_supertranscript_from_reference.py, filter_low_expr_transcripts.pl, get_Trinity_gene_to_trans_map.pl, insilico_read_normalization.pl, oases, oases_pipeline.py, retrieve_sequences_from_fasta.pl, run_DE_analysis.pl, run_DE_analysis_from_samples_file.pl, seqtk-trinity, sift_bam_max_cov.pl, salmon, STAR, STARlong, velvetg, velveth, giffilter, gifsponge, bowtie-align-l, bowtie-align-s, bowtie-build-l
GITHUB quay.io/biocontainers/disco shpc-registry automated BioContainers addition for disco buildG, buildG-MPI, buildG-MPIRMA, disco.cfg, disco_2.cfg, disco_3.cfg, fido2-assert, fido2-cred, fido2-token, fullsimplify, parsimplify, runAssembly-MPI.sh, runAssembly.sh, runDisco-MPI-ALPS.sh, runDisco-MPI-AllineaMAP.sh, runDisco-MPI-SLURM.sh, runDisco-MPI.sh, runDisco.sh, runECC.sh, scp, sftp, ssh, ssh-add, ssh-agent, ssh-keygen, ssh-keyscan, sshd, kmutate.sh, runhmm.sh, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, sketchblacklist2.sh
GITHUB quay.io/biocontainers/discosnp shpc-registry automated BioContainers addition for discosnp SRC_counter, SRC_linker_ram, dbgh5, dsk, dsk2ascii, extract_reads_from_bv, generate_bv, kissnp2, kissreads2, quick_hierarchical_clustering, read_file_names, run_discoSnp++.sh, run_discoSnp++_ML.sh, run_discoSnpRad.sh, short_read_connector.sh, qualfa2fq.pl, xa2multi.pl, bwa, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config, h5cc
GITHUB quay.io/biocontainers/dist_est singularity registry hpc automated addition for dist_est dist_est
GITHUB quay.io/biocontainers/distle singularity registry hpc automated addition for distle distle
GITHUB quay.io/biocontainers/disty shpc-registry automated BioContainers addition for disty disty
GITHUB quay.io/biocontainers/ditasic shpc-registry automated BioContainers addition for ditasic ditasic, ditasic_mapping.py, ditasic_matrix.py, kallisto, mason_frag_sequencing, mason_genome, mason_materializer, mason_methylation, mason_simulator, mason_splicing, mason_variator, f2py3.9, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug
GITHUB quay.io/biocontainers/divvier shpc-registry automated BioContainers addition for divvier divvier
GITHUB quay.io/biocontainers/dkfz-bias-filter shpc-registry automated BioContainers addition for dkfz-bias-filter dkfzbiasfilter.py, dkfzbiasfilter_summarize.py, qhelpconverter, f2py2, f2py2.7, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner, repc
GITHUB quay.io/biocontainers/dlcpar shpc-registry automated BioContainers addition for dlcpar dlcoal_to_dlcpar, dlcpar, dlcpar_search, dlcpar_to_dlcoal, tree-events-dlc, tree-events-dlcpar, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/dligand2 shpc-registry automated BioContainers addition for dligand2 dligand2
GITHUB quay.io/biocontainers/dmbiolib singularity registry hpc automated addition for dmbiolib f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc
GITHUB quay.io/biocontainers/dmox singularity registry hpc automated addition for dmox dmox
GITHUB quay.io/biocontainers/dms shpc-registry automated BioContainers addition for dms MS-comp-taxa, MS-comp-taxa-dynamic, MS-make-ref, MS-single-to-table, MS-table-to-single
GITHUB quay.io/biocontainers/dmtools singularity registry hpc automated addition for dmtools bam2dm, dmDMR, dmalign, dmtools, genome2cg, genomebinLen, annot-tsv, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/dna-nn singularity registry hpc automated addition for dna-nn dna-brnn, dna-cnn, gen-fq, parse-rm.js, k8
GITHUB quay.io/biocontainers/dna_features_viewer shpc-registry automated BioContainers addition for dna_features_viewer fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp
GITHUB quay.io/biocontainers/dnaapler singularity registry hpc automated addition for dnaapler dnaapler, pyrodigal, test_pcre, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl, sort-table, spdi2tbl, split-at-intron, tbl2xml, transmute.Linux
GITHUB quay.io/biocontainers/dnabot shpc-registry automated BioContainers addition for dnabot miniterm.py, jsonschema, f2py3.8, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/dnacauldron singularity registry hpc automated addition for dnacauldron dnacauldron, html2text, runxlrd.py, fonttools, pyftmerge, pyftsubset, ttx, tqdm, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, gif2rgb, gifbuild, gifclrmp, giffix
GITHUB quay.io/biocontainers/dnachisel shpc-registry automated BioContainers addition for dnachisel dnachisel, tqdm, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/dnaio shpc-registry automated BioContainers addition for dnaio igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, 2to3-3.9, idle3.9, pydoc3.9, python3.9
GITHUB quay.io/biocontainers/dnamarkmaker singularity registry hpc automated addition for dnamarkmaker DNAMarkMaker, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim
GITHUB quay.io/biocontainers/dnapi shpc-registry automated BioContainers addition for dnapi dnapi.py, qual_offset.py, qual_trim.py, to_fasta.py, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/dnarrange shpc-registry automated BioContainers addition for dnarrange dnarrange, dnarrange-genes, dnarrange-link, dnarrange-merge, fasta-nr, fastq-interleave, lamassemble, last-dotplot, last-map-probs, last-merge-batches, last-multiplot, last-pair-probs, last-postmask, last-split, last-split5, last-train, lastal, lastal5, lastdb, lastdb5, maf-convert, maf-cut, maf-join, maf-sort, maf-swap, parallel-fasta, parallel-fastq, parsort, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns
GITHUB quay.io/biocontainers/dnaweaver shpc-registry automated BioContainers addition for dnaweaver dnachisel, weasyprint, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides
GITHUB quay.io/biocontainers/dnaweaver_synbiocad shpc-registry automated BioContainers addition for dnaweaver_synbiocad dnachisel, weasyprint, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod
GITHUB quay.io/biocontainers/dnmtools singularity registry hpc automated addition for dnmtools dnmtools, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/dnoise singularity registry hpc automated addition for dnoise dnoise, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tqdm, python3.1
GITHUB quay.io/biocontainers/dnp-binstrings shpc-registry automated BioContainers addition for dnp-binstrings dnp-binstrings
GITHUB quay.io/biocontainers/dnp-corrprofile shpc-registry automated BioContainers addition for dnp-corrprofile dnp-corrprofile
GITHUB quay.io/biocontainers/dnp-diprofile shpc-registry automated BioContainers addition for dnp-diprofile dnp-diprofile
GITHUB quay.io/biocontainers/dnp-fourier shpc-registry automated BioContainers addition for dnp-fourier dnp-fourier
GITHUB quay.io/biocontainers/dnp-mapping shpc-registry automated BioContainers addition for dnp-mapping dnp-mapping
GITHUB quay.io/biocontainers/docking_py shpc-registry automated BioContainers addition for docking_py adt, archosv, cadd, docking_py, mglenv.csh, mglenv.sh, pdb2pqr_cli, pmv, prepare_ligand4.py, prepare_receptor4.py, python2.5, python2.5-config, pythonsh, qvina2, qvina2_split, qvinaw, qvinaw_split, smina, tester, vina, vina_split, vision, pilconvert.py, pildriver.py, pilfile.py, pilfont.py, pilprint.py, f2py3.8, idle, python-config, smtpd.py, 2to3-3.8
GITHUB quay.io/biocontainers/dockq singularity registry hpc automated addition for dockq DockQ, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tqdm
GITHUB quay.io/biocontainers/dodge singularity registry hpc automated addition for dodge dodge, dodgedists, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config
GITHUB quay.io/biocontainers/doebase shpc-registry automated BioContainers addition for doebase
GITHUB quay.io/biocontainers/doit shpc-registry automated BioContainers addition for doit doit, smtpd.pyc, easy_install-2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5
GITHUB quay.io/biocontainers/domclust shpc-registry automated BioContainers addition for domclust addtit.pl, blast2homfile.pl, cmpr.pl, convgraph.pl, domclust, fasta2genefile.pl, perl5.22.2, c2ph, pstruct, podselect
GITHUB quay.io/biocontainers/dominate shpc-registry automated BioContainers addition for dominate easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5
GITHUB quay.io/biocontainers/domino shpc-registry automated BioContainers addition for domino community, domino, pybind11-config, slicer, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv
GITHUB quay.io/biocontainers/dosage_score singularity registry hpc automated addition for dosage_score dosage_score, dosage_score_plot, annot-tsv, fasta-sanitize.pl, plot-ampliconstats, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl
GITHUB quay.io/biocontainers/doubletd shpc-registry automated BioContainers addition for doubletd doubletd, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/doubletdetection singularity registry hpc automated addition for doubletdetection qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, igraph, h5tools_test_utils, scanpy, numpy-config, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics
GITHUB quay.io/biocontainers/downpore shpc-registry automated BioContainers addition for downpore downpore
GITHUB quay.io/biocontainers/dr-disco shpc-registry automated BioContainers addition for dr-disco chimerascan-exclude-transcriptome-events, chimerascan-relative-bedpe-to-CG, defuse-clusters-to-CG, dr-disco, fuma, fuma-gencode-gtf-to-bed, fuma-list-to-boolean-list, fusioncatcher-to-CG, htseq-count, htseq-qa, easy_install-2.7, qhelpconverter, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools
GITHUB quay.io/biocontainers/dragmap shpc-registry automated BioContainers addition for dragmap dragen-os, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/dragonflye shpc-registry automated BioContainers addition for dragonflye assembly-scan, check_compression, compress_fast5, demux_fast5, dragonflye, fast5_subset, flye, flye-minimap2, flye-modules, flye-samtools, hdf2tf.py, medaka, medaka_consensus, medaka_counts, medaka_data_path, medaka_haploid_variant, medaka_version_report, mini_align, miniasm, minidot, multi_to_single_fast5, nanoq, porechop, rasusa, raven, single_to_multi_fast5, whatshap, fastp, pilon, minimap2.py, samclip, any2fasta, kmc, kmc_dump, kmc_tools, racon, rampler
GITHUB quay.io/biocontainers/dram shpc-registry automated BioContainers addition for dram DRAM-setup.py, DRAM-v.py, DRAM.py, EukHighConfidenceFilter, covels-SE, coves-SE, eufindtRNA, fasta2gsi, sstofa, tRNAscan-SE, tRNAscan-SE.conf, trnascan-1.4, jemalloc-config, jeprof, jemalloc.sh, erb, gem, irb, rake, rdoc, ri, ruby
GITHUB quay.io/biocontainers/drax shpc-registry automated BioContainers addition for drax addTaxonNames, bbmergegapped.sh, bbqc.sh, convertNR, convert_mar_to_kaiju.py, drax, gbk2faa.pl, groot, kaiju, kaiju2krona, kaijuReport, kaijup, kaijux, makeDB.sh, mergeOutputs, metacherchant.sh, mkbwt, mkfmi, nextflow, normandcorrectwrapper.sh, taxonlist.tsv, multiqc, fastp, ktClassifyBLAST, ktGetContigMagnitudes, ktGetLCA, ktGetLibPath, ktGetTaxIDFromAcc, ktGetTaxInfo, ktImportBLAST, ktImportDiskUsage
GITHUB quay.io/biocontainers/dreamtools shpc-registry automated BioContainers addition for dreamtools dreamtools, dreamtools-layout, dreamtools-scoring, synapse, easydev_buildPackage, ibrowse, multigit, browse, runxlrd.py, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel
GITHUB quay.io/biocontainers/drep shpc-registry automated BioContainers addition for drep ScaffoldLevel_dRep.py, dRep, delta2vcf, parse_stb.py, fastANI, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, combineMUMs, delta-filter, dnadiff, exact-tandems
GITHUB quay.io/biocontainers/drive shpc-registry automated BioContainers addition for drive drive
GITHUB quay.io/biocontainers/drop shpc-registry automated BioContainers addition for drop drop, git2_cli, wbuild, gatk, STAR, STARlong, plac_runner.py, yte, bc, dc, docutils, pulptest, gff2gff.py
GITHUB quay.io/biocontainers/dropbox shpc-registry automated BioContainers addition for dropbox easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5
GITHUB quay.io/biocontainers/dropest shpc-registry automated BioContainers addition for dropest dropReport.Rsc, dropest, droptag, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/dropkick singularity registry hpc automated addition for dropkick SvtAv1DecApp, SvtAv1EncApp, dav1d, dropkick, h5tools_test_utils, rav1e, tiff2fsspec, aomdec, aomenc, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, imageio_download_bin, imageio_remove_bin, skivi, h5fuse.sh, scanpy, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff
GITHUB quay.io/biocontainers/dropletutils-scripts shpc-registry automated BioContainers addition for dropletutils-scripts dropletutils-barcoderanks.R, dropletutils-downsample-matrix.R, dropletutils-empty-drops.R, dropletutils-make-test-sdrf.R, dropletutils-read-10x-counts.R, dropletutils-scripts-post-install-tests.bats, dropletutils-scripts-post-install-tests.sh, build_env_setup.sh, conda_build.sh, x86_64-conda-linux-gnu-gfortran.bin
GITHUB quay.io/biocontainers/dropseq_tools shpc-registry automated BioContainers addition for dropseq_tools BamTagHistogram, BamTagOfTagCounts, BaseDistributionAtReadPosition, CensusSeq, CollapseBarcodesInPlace, CollapseTagWithContext, CompareDropSeqAlignments, ConvertToRefFlat, CountUnmatchedSampleIndices, CreateIntervalsFiles, CsiAnalysis, DetectBeadSubstitutionErrors, DetectBeadSynthesisErrors, DigitalExpression, FilterBam, FilterBamByTag, FilterGtf, GatherGeneGCLength, GatherMolecularBarcodeDistributionByGene, GatherReadQualityMetrics, MaskReferenceSequence, MergeDgeSparse, PolyATrimmer, ReduceGtf, RollCall, SelectCellsByNumTranscripts, SingleCellRnaSeqMetricsCollector, SplitBamByCell, TagBamWithReadSequenceExtended, TagReadWithGeneExonFunction, TagReadWithGeneFunction, TagReadWithInterval, TrimStartingSequence, ValidateReference, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/drprg singularity registry hpc automated addition for drprg drprg, make_prg, pandora, gff2gff.py, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns, mafft-fftnsi, mafft-ginsi, mafft-homologs.rb, mafft-linsi, mafft-nwns, mafft-nwnsi, mafft-profile, mafft-qinsi, mafft-xinsi, nwns, nwnsi, mafft, guess-ploidy.py, plot-roh.py, run-roh.pl
GITHUB quay.io/biocontainers/drtransformer singularity registry hpc automated addition for drtransformer DrPlotter, DrTransformer, RNAmultifold, flit, RNAdos, docutils, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex, RNAsnoop, RNAfold, Kinfold, RNALfold, RNAaliduplex, RNAalifold, RNAcofold, RNAdistance, RNAduplex, RNAeval
GITHUB quay.io/biocontainers/drug2cell singularity registry hpc automated addition for drug2cell qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, h5tools_test_utils, h5fuse.sh, h5delete, natsort, tqdm, fonttools, pyftmerge, pyftsubset, ttx, brotli, tjbench, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy
GITHUB quay.io/biocontainers/dscr shpc-registry automated BioContainers addition for dscr dsrc, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5
GITHUB quay.io/biocontainers/dsh-bio shpc-registry automated BioContainers addition for dsh-bio dsh-bio, dsh-compress-bed, dsh-compress-fasta, dsh-compress-fastq, dsh-compress-gaf, dsh-compress-gfa1, dsh-compress-gfa2, dsh-compress-gff3, dsh-compress-paf, dsh-compress-rgfa, dsh-compress-sam, dsh-compress-vcf, dsh-create-sequence-dictionary, dsh-disinterleave-fastq, dsh-downsample-fastq, dsh-downsample-interleaved-fastq, dsh-export-segments, dsh-extract-fastq, dsh-extract-fastq-by-length, dsh-fasta-to-fastq, dsh-fastq-description, dsh-fastq-sequence-length, dsh-fastq-to-bam, dsh-fastq-to-fasta, dsh-fastq-to-text, dsh-filter-bed, dsh-filter-fasta, dsh-filter-fastq, dsh-filter-gaf, dsh-filter-gfa1, dsh-filter-gfa2, dsh-filter-gff3, dsh-filter-paf, dsh-filter-rgfa, dsh-filter-sam, dsh-filter-vcf, dsh-gfa1-to-gfa2, dsh-identify-gfa1, dsh-interleave-fastq, dsh-interleaved-fastq-to-bam, dsh-links-to-cytoscape-edges, dsh-links-to-property-graph, dsh-list-filesystems, dsh-reassemble-paths, dsh-remap-dbsnp, dsh-remap-phase-set, dsh-rename-bed-references, dsh-rename-gff3-references, dsh-rename-vcf-references, dsh-segments-to-cytoscape-nodes, dsh-segments-to-property-graph, dsh-split-bed, dsh-split-fasta, dsh-split-fastq, dsh-split-gaf, dsh-split-gff3, dsh-split-interleaved-fastq, dsh-split-paf, dsh-split-sam, dsh-split-vcf, dsh-text-to-fastq, dsh-traversals-to-cytoscape-edges, dsh-traversals-to-property-graph, dsh-traverse-paths, dsh-truncate-fasta, dsh-truncate-paths, dsh-variant-table-to-vcf, dsh-vcf-header, dsh-vcf-pedigree, dsh-vcf-samples, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink
GITHUB quay.io/biocontainers/dsk shpc-registry automated BioContainers addition for dsk dsk, dsk2ascii, h5cc
GITHUB quay.io/biocontainers/dsrc shpc-registry automated BioContainers addition for dsrc dsrc
GITHUB quay.io/biocontainers/dudes shpc-registry automated BioContainers addition for dudes DUDes.py, DUDesDB.py, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/duet shpc-registry automated BioContainers addition for duet clair3.py, cuteSV, duet, libclair3.c, libclair3.o, longphase, ngmlr, pypy, pypy3, pypy3.6, run_clair3.sh, svim, whatshap, gdbm_dump, gdbm_load, gdbmtool, estimator_ckpt_converter, google-oauthlib-tool, igzip, tf_upgrade_v2, pbunzip2, pbzcat, pbzip2
GITHUB quay.io/biocontainers/dunovo shpc-registry automated BioContainers addition for dunovo align-families.py, baralign.sh, bash, bashbug, consensus.py, correct.py, dunovo.py, dunovo_parsers.py, file, gunzip, gzexe, gzip, loeb-2.0.sh, make-barcodes.awk, make-consensi.py, make-families.sh, parallel_tools.py, precheck.py, safety-not-guaranteed.py, seqtools.py, shims.py, trimmer.py, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zless, zmore, znew, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect, gawk-5.1.0
GITHUB quay.io/biocontainers/duphold shpc-registry automated BioContainers addition for duphold duphold, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/duplex-tools singularity registry hpc automated addition for duplex-tools duplex_tools, pyfastx, natsort, tqdm, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/duplomap shpc-registry automated BioContainers addition for duplomap duplomap, duplomap-prepare, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa
GITHUB quay.io/biocontainers/dupre shpc-registry automated BioContainers addition for dupre bam2occupancy, dupre, pulpdoctest, pulptest, f2py3.6, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, 2to3-3.6
GITHUB quay.io/biocontainers/dupsifter singularity registry hpc automated addition for dupsifter dupsifter
GITHUB quay.io/biocontainers/dvorfs shpc-registry automated BioContainers addition for dvorfs dba, dnal, dvorfs, estwise, estwisedb, genewise, genewisedb, hmmalign2, hmmbuild2, hmmcalibrate2, hmmconvert2, hmmemit2, hmmfetch2, hmmindex2, hmmpfam2, hmmsearch2, process-genewise, promoterwise, psw, pswdb, scanwise, scanwise_server, _bdftogd, _gd2copypal, _gd2togif, _gd2topng, _gdcmpgif, _gdparttopng, _gdtopng, _giftogd2, _pngtogd, _pngtogd2
GITHUB quay.io/biocontainers/dwgsim shpc-registry automated BioContainers addition for dwgsim dwgsim, dwgsim_eval
GITHUB quay.io/biocontainers/dx-cwl shpc-registry automated BioContainers addition for dx-cwl bagit.py, dx, dx-app-wizard, dx-build-app, dx-build-applet, dx-clone-asset, dx-cwl, dx-docker, dx-download-all-inputs, dx-fetch-bundled-depends, dx-generate-dxapp, dx-jobutil-add-output, dx-jobutil-dxlink, dx-jobutil-new-job, dx-jobutil-parse-link, dx-jobutil-report-error, dx-log-stream, dx-mount-all-inputs, dx-notebook-reconnect, dx-print-bash-vars, dx-upload-all-outputs, prov-compare, prov-convert, wsdump.py, xattr, cwltool, schema-salad-doc, schema-salad-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, doesitcache, activate-global-python-argcomplete
GITHUB quay.io/biocontainers/dxpy shpc-registry automated BioContainers addition for dxpy dx, dx-app-wizard, dx-build-app, dx-build-applet, dx-clone-asset, dx-docker, dx-download-all-inputs, dx-fetch-bundled-depends, dx-generate-dxapp, dx-jobutil-add-output, dx-jobutil-dxlink, dx-jobutil-new-job, dx-jobutil-parse-link, dx-jobutil-report-error, dx-log-stream, dx-mount-all-inputs, dx-notebook-reconnect, dx-print-bash-vars, dx-upload-all-outputs, wsdump, xattr, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/dxua shpc-registry automated BioContainers addition for dxua dxua
GITHUB quay.io/biocontainers/dysgu singularity registry hpc automated addition for dysgu dysgu, cygdb, cython, cythonize, normalizer, f2py3.10, htsfile, bgzip, tabix, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/e-pcr shpc-registry automated BioContainers addition for e-pcr e-PCR, fahash, famap, re-PCR
GITHUB quay.io/biocontainers/ea-utils shpc-registry automated BioContainers addition for ea-utils alc, determine-phred, fastq-clipper, fastq-join, fastq-mcf, fastq-multx, fastq-stats, fastx-graph, randomFQ, sam-stats, varcall
GITHUB quay.io/biocontainers/eagle shpc-registry automated BioContainers addition for eagle eagle, sqt, cyvcf2, cutadapt, flask, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py
GITHUB quay.io/biocontainers/eagle2 singularity registry hpc automated addition for eagle2 eagle, annot-tsv, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/earlgrey singularity registry hpc automated addition for earlgrey BuildDatabase, LAI, LTRPipeline, LTR_retriever, LTR_retriever.py, Linup, Ninja, RM2Bed.py, Refiner, RepeatClassifier, RepeatMasker.py, RepeatModeler, RepeatScout, TEsorter, TEsorter-test, alignAndCallConsensus.pl, bigRmskAlignBed.as, bigRmskBed.as, buildRMLibFromEMBL.pl, buildSummary.pl, build_lmer_table, combineRMFiles.pl, compare-out-to-gff.prl, concatenate_domains.py, convert_MGEScan3.0.pl, convert_ltr_struc.pl, convert_ltrdetector.pl, earlGrey, edgeredef, eledef, eleredef, famdef, filter-stage-1.prl, filter-stage-2.prl, generateSeedAlignments.pl, genometools-config, get_record.py, gt, imagespread, makeclusterdb, maskFile.pl, merge-lmer-tables.prl, mreps, nmerge, nseg, ppserver.py, renumberRMFiles.pl, rmToTrackHub.pl, sa-ssr, viewMSA.pl, wublastToCrossmatch.pl, DupMasker, ProcessRepeats, RepeatMasker, RepeatProteinMask, calcDivergenceFromAlign.pl, createRepeatLandscape.pl, dupliconToSVG.pl, getRepeatMaskerBatch.pl, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, trfMask, rmblastn, blastn_vdb, tblastn_vdb, blast_report, blastdb_convert, blastdb_path, trf4.10.0-rc.2.linux64.exe, trf, twoBitToFa, twoBitInfo, faToTwoBit, FET.pl, cd-hit-clstr_2_blm8.pl
GITHUB quay.io/biocontainers/easel shpc-registry automated BioContainers addition for easel easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct
GITHUB quay.io/biocontainers/eastr singularity registry hpc automated addition for eastr eastr, minimap2.py, annot-tsv, numpy-config, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl
GITHUB quay.io/biocontainers/easydev shpc-registry automated BioContainers addition for easydev easydev_buildPackage, ibrowse, multigit, browse, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m
GITHUB quay.io/biocontainers/easypqp shpc-registry automated BioContainers addition for easypqp
GITHUB quay.io/biocontainers/ebcsgen shpc-registry automated BioContainers addition for ebcsgen isympy, x86_64-conda_cos7-linux-gnu-ld, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/ebfilter shpc-registry automated BioContainers addition for ebfilter EBFilter, vcf_sample_filter.py, vcf_filter.py, vcf_melt, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m
GITHUB quay.io/biocontainers/ebi-eva-common-pyutils singularity registry hpc automated addition for ebi-eva-common-pyutils archive_directory.py, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, xslt-config, xsltproc, normalizer
GITHUB quay.io/biocontainers/ebisearch shpc-registry automated BioContainers addition for ebisearch ebi_metagenomics, ebisearch, flake8, pycodestyle, pyflakes, chardetect, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/ebolaseq singularity registry hpc automated addition for ebolaseq ebolaseq, gawk-5.3.1, readal, statal, trimal, iqtree2, iqtree, gawkbug, idle3.13, pydoc3.13, python3.13, python3.13-config, mafft-sparsecore.rb, awk, einsi, fftns, fftnsi, gawk, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns, mafft-fftnsi, mafft-ginsi, mafft-homologs.rb, mafft-linsi
GITHUB quay.io/biocontainers/echidna singularity registry hpc automated addition for echidna protoc-28.2.0, torchfrtrace, torch_shm_manager, isympy, torchrun, igraph, convert-caffe2-to-onnx, convert-onnx-to-caffe2, scanpy, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, h5tools_test_utils, h5fuse.sh, numpy-config, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info
GITHUB quay.io/biocontainers/ecmwfapi shpc-registry automated BioContainers addition for ecmwfapi 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/ecopcr shpc-registry automated BioContainers addition for ecopcr ecoPCR, ecoPCRFilter.py, ecoPCRFormat.py, ecoSort.py, ecofind, ecogrep, createfontdatachunk.py, enhancer.py, explode.py, gifmaker.py, painter.py, player.py, thresholder.py, viewer.py, pilconvert.py, pildriver.py
GITHUB quay.io/biocontainers/ecoprimers shpc-registry automated BioContainers addition for ecoprimers ecoPrimers
GITHUB quay.io/biocontainers/ecopy shpc-registry automated BioContainers addition for ecopy
GITHUB quay.io/biocontainers/ectyper shpc-registry automated BioContainers addition for ectyper ectyper, capnp, capnpc, capnpc-c++, capnpc-capnp, gff2gff.py, mash, seqtk, CA.pm, cacert.pem, index-themes
GITHUB quay.io/biocontainers/edd shpc-registry automated BioContainers addition for edd edd, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, gff2gff.py, guess-ploidy.py
GITHUB quay.io/biocontainers/eden shpc-registry automated BioContainers addition for eden RNAshapes, dsdp5, location_predictor, model, motif, motif_display.py, obfitall, obmm, transformseq, weblogo, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize
GITHUB quay.io/biocontainers/edena shpc-registry automated BioContainers addition for edena edena
GITHUB quay.io/biocontainers/editdistance shpc-registry automated BioContainers addition for editdistance 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5, wish8.5
GITHUB quay.io/biocontainers/edittag shpc-registry automated BioContainers addition for edittag add_tags_to_adapters.py, add_tags_to_primers.py, design_edit_metric_tags.py, estimate_sequencing_error_effects.py, get_tag_flows_for_454.py, validate_edit_metric_tags.py, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/edlib shpc-registry automated BioContainers addition for edlib edlib-aligner
GITHUB quay.io/biocontainers/edta shpc-registry automated BioContainers addition for edta BuildDatabase, DateRepeats, DupMasker, EDTA.pl, EDTA_processI.pl, EDTA_raw.pl, LAI, LTRPipeline, LTR_retriever, LTR_retriever.py, Linup, Ninja, ProcessRepeats, RM2Bed.py, Refiner, RepeatClassifier, RepeatMasker, RepeatMasker.py, RepeatModeler, RepeatProteinMask, RepeatScout, TEsorter, TEsorter-test, alignAndCallConsensus.pl, buildRMLibFromEMBL.pl, buildSummary.pl, build_lmer_table, calcDivergenceFromAlign.pl, check_result.pl, compare-out-to-gff.prl, concatenate_domains.py, convert_MGEScan3.0.pl, convert_ltr_struc.pl, convert_ltrdetector.pl, createRepeatLandscape.pl, down_tRNA.pl, dupliconToSVG.pl, edgeredef, eledef, eleredef, famdef, filter-stage-1.prl, filter-stage-2.prl, filter_rt.pl, generateSeedAlignments.pl, genome_plot.pl, genome_plot2.pl, genome_plot_svg.pl, genometools-config, getRepeatMaskerBatch.pl, get_record.py, grf-alignment, grf-alignment2, grf-dbn, grf-filter, grf-intersperse, grf-main, grf-mite-cluster, grf-nest, gt, imagespread, lib-test.pl, ltr_finder, maskFile.pl, mdust, merge-lmer-tables.prl, nmerge, nseg, ppserver.py, psearch, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, trfMask, viewMSA.pl, wublastToCrossmatch.pl, rmblastn, trf4.10.0-rc.2.linux64.exe, trf, twoBitToFa, blast_report, blastdb_convert, blastdb_path, twoBitInfo, faToTwoBit, theano-cache
GITHUB quay.io/biocontainers/effectivet3 shpc-registry automated BioContainers addition for effectivet3 effectivet3, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, extcheck
GITHUB quay.io/biocontainers/efishent singularity registry hpc automated addition for efishent AccessFold, AllSub, CircleCompare, CycleFold, DuplexFold, DuplexFold-smp, DynalignDotPlot, EDcalculator, EDcalculator-smp, ETEcalculator, ETEcalculator-smp, EnergyPlot, EnsembleEnergy, Fold, Fold-smp, MaxExpect, MaxExpect-smp, NAPSS, OligoWalk, PARTS, ProbKnot, ProbKnot-smp, ProbScan, ProbabilityPlot, ProbablePair, ProbablePair-smp, RemovePseudoknots, RemovePseudoknots-smp, Rsample, Rsample-smp, ShapeKnots, ShapeKnots-smp, StructureProb, StructureProb-smp, SymmetryTester, TurboFold, TurboFold-smp, TurboHomology, bifold, bifold-smp, bipartition, bipartition-smp, csv-import, ct2dot, design, dot2ct, draw, dynalign, dynalign-smp, dynalign_ii, dynalign_ii-smp, eFISHent, efishent, efn2, efn2-smp, luigi, luigi-deps, luigi-deps-tree, luigi-grep, luigid, multilign, multilign-smp, oligoscreen, oligoscreen-smp, orc-memory, orc-scan, orega, orega-smp, partition, partition-smp, phmm, pyomo, refold, scorer, stochastic, stochastic-smp, timezone-dump, validate, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, docutils, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect, edirect.py
GITHUB quay.io/biocontainers/ega-cryptor singularity registry hpc automated addition for ega-cryptor ega-cryptor, idle3.13, pydoc3.13, python3.13, python3.13-config, cups-config, ippeveprinter, ipptool, jaotc, hb-info, jfr, jjs, pack200, rmic, rmid, unpack200, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, tjbench, jdeps, jar
GITHUB quay.io/biocontainers/ega2 shpc-registry automated BioContainers addition for ega2 ega2, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/egap singularity registry hpc automated addition for egap Bifrost, EGAP, MasurcaCelera.pm, MasurcaCommon.pm, MasurcaConf.pm, MasurcaPaths.pm, MasurcaSoap.pm, MasurcaSuperReads.pm, NanoPlot, Ratatosk, SOAPdenovo-127mer, SOAPdenovo-63mer, abi-dump.3, abi-dump.3.2.0, abyss-rresolver-short, addSurrogatesToFrgCtgFile, addSurrogatesToFrgctg.perl, add_missing_mates.pl, add_pb_seq.pl, align-info.3, align-info.3.2.0, bbcrisprfinder.sh, bbsort.sh, blast_self_alignment_filter.pl, bloom_query, break_contigs.pl, build_human_reference.sh, cache-mgr.3, cache-mgr.3.2.0, calcuts, cat.sh, ccs, ccs-alt, cg2illumina.sh, check-corrupt, check-corrupt.3, check-corrupt.3.2.0, checkstrand.sh, chromosome_scaffolder.sh, classify_reads.pl, closeGaps.oneDirectory.fromMinKmerLen.perl, closeGaps.oneDirectory.perl, closeGaps.perl, closeGapsInScaffFastaFile.perl, closeGapsLocally.perl, close_gaps.sh, close_scaffold_gaps.sh, collectReadSequencesForLocalGapClosing, comparelabels.sh, compleasm, compute_contig_positions.pl, compute_coverage.pl, compute_sr_cov.pl, compute_sr_cov.revisedForGCContig.pl, copyfile.sh, correct_with_k_unitigs.sh, correct_with_k_unitigs_fast.pl, countbarcodes2.sh, countduplicates.sh, createFastaSuperReadSequences, createKUnitigMaxOverlaps, createSuperReadSequenceAndPlacementFileFromCombined.perl, createSuperReadsForDirectory.perl, create_end_pairs.perl, create_end_pairs.pl, create_k_unitigs_large_k, create_k_unitigs_large_k2, create_mega_reads, create_merged_mega-reads.pl, create_merged_sequences.pl, create_sr_frg, create_sr_frg.pl, dataformat, datasets, deduplicate_contigs.sh, deduplicate_unitigs.sh, demuxserver.sh, determineUnjoinablePacbioSubmegas.perl, eliminateBadSuperReadsUsingList, error_corrected2frg, evaluate_splits.pl, expand_fastq, extendSuperReadsBasedOnUniqueExtensions, extendSuperReadsForUniqueKmerNeighbors, extractJoinableAndNextPassReadsFromJoinKUnitigs.perl, extract_merges.pl, extract_merges_mega-reads.pl, extract_unique_mega-reads.pl, extract_unjoined_pairs.pl, extractreads.pl, extractreads_not.pl, fadvise, fasta2frg.pl, fasta2frg_m.pl, fasta_make_Nbase_bed.pl, fasterq-dump-orig.3.2.0, fasterq-dump.3, fasterq-dump.3.2.0, fastq-dump-orig.3.2.0, fastq-dump.3, fastq-dump.3.2.0, fastqToFasta.pl, fill_unaligned_gaps.pl, filter_alt.pl, filter_delta_file_for_qrys.pl, filter_library.sh, filter_overlap_file, filter_redundancy.pl, final_polish.sh, findGapsInCoverageOfPacbios, findMatchesBetweenKUnitigsAndReads, find_contained_reads.pl, find_repeats.pl, findrepeats.sh, fix_consensus_from_vcf.pl, fix_unitigs.sh, fragScaff.pl, fragScaff.sh, gawk-5.3.1, getATBiasInCoverageForIllumina_v2, getEndSequencesOfContigs.perl, getGCBiasStatistics.perl, getLengthStatisticsForKUnitigsFile.perl, getMeanAndStdevByGCCount.perl, getMeanAndStdevForGapsByGapNumUsingCeleraAsmFile.perl, getMeanAndStdevForGapsByGapNumUsingCeleraTerminatorDirectory.perl, getNumBasesPerReadInFastaFile.perl, getSequenceForClosedGaps.perl, getSequenceForLocallyClosedGaps.perl, getSuperReadInsertCountsFromReadPlacementFile, getSuperReadInsertCountsFromReadPlacementFileTwoPasses, getSuperReadPlacements.perl, getUnitigTypeFromAsmFile.perl, get_seqs, get_super_read_sizes, get_super_read_sizes.pl, gfatools, gradebins.sh, hifiasm, hist_plot.py, hmmeralign, hmmerbuild, homo_trim, illumina-dump.3, illumina-dump.3.2.0, indexlr, insert_repeats.pl, introduce_errors_fasta_file.pl, irqtop, jf_aligner, joinKUnitigs_v3, join_mega_reads_trim.onepass.nomatch.pl, join_mega_reads_trim.onepass.pl, join_mega_reads_trim.onepass.ref.pl, join_mega_reads_trim.onepass.rna.pl, kdbmeta.3, kdbmeta.3.2.0, killBadKUnitigs, longest_path, lrz, lsirq, makeAdjustmentFactorsForNumReadsForAStatBasedOnGC, makeAdjustmentFactorsForNumReadsForAStatBasedOnGC_v2, make_mate_frg.pl, make_mr_frg.pl, make_rejoin_links.pl, makequickbinvector.sh, masurca, masurca-superreads, mega_reads_assemble_cluster.sh, mega_reads_assemble_cluster2.sh, mega_reads_assemble_polish.sh, mega_reads_assemble_ref.sh, mergeSuperReadsUniquely.pl, merge_contigs.pl, merge_coords, merge_matches_and_tile_coords_file.pl, merge_matches_and_tile_coords_file_new.pl, merge_mate_pairs, merge_mega-reads.pl, merge_sequences_simple.pl, mi_bf_generate, miniprot, netfilter.sh, ngs-pileup, ngs-pileup.3, ngs-pileup.3.2.0, ngscstat, novademux.sh, nsenter, opal.jar, outputAlekseysJellyfishReductionFile.perl, outputJoinedPairs.perl, outputRecordsNotOnList, output_reconciled_scaffolds.pl, paf2gfa, parallel_delta-filter.sh, pbcstat, pd_config.py, picksubset.sh, pileup2.sh, pipesz, pl2bat.pl, plothist.sh, plotreadposition.sh, polca.sh, polish_with_illumina_assembly.sh, polyfilter.sh, prefetch-orig.3.2.0, prefetch.3, prefetch.3.2.0, prlimit, process_scaffold_gaps.pl, protoc-28.2.0, purge_dups, quickbin.sh, quorum, quorum_create_database, quorum_error_correct_reads, ragtag.py, ragtag_agp2fa.py, ragtag_agpcheck.py, ragtag_asmstats.py, ragtag_break_query.py, ragtag_correct.py, ragtag_create_links.py, ragtag_delta2paf.py, ragtag_merge.py, ragtag_paf2delta.py, ragtag_patch.py, ragtag_rename.py, ragtag_scaffold.py, ragtag_splitasm.py, ragtag_stats.py, ragtag_update_gff.py, randomreadsmg.sh, randseq, raxml, raxmlp, rbs, rcexplain.3, rcexplain.3.2.0, rdbg, recompute_astat_superreads.sh, recompute_astat_superreads_CA8.sh, reconcile_consensus.pl, reconcile_matches.pl, reconciliate_mega_reads.maximal.nucmer.pl, recover_scaffolds.pl, reduce_sr, reducecolumns.sh, ref-variation, ref-variation.3, ref-variation.3.2.0, refine.sh, refine_alignments.pl, rename_filter_fastq, rename_filter_fastq.pl, renamebymapping.sh, renamebysketch.sh, resolve_trio.sh, restore_ns.pl, reverse_complement, run-sepp.sh, runByDirectory, runSRCA.pl, run_ECR.sh, run_busco, run_busco2, run_kcm, run_pasta.py, run_pasta_gui.py, run_purge_dups.py, run_sepp.py, run_seqtools.py, run_upp.py, sam-dump-orig.3.2.0, sam-dump.3, sam-dump.3.2.0, samToDelta, samba.sh, sample_mate_pairs.pl, scoresequence.sh, seppJsonMerger.jar, seqtovec.sh, setup.py, sff-dump.3, sff-dump.3.2.0, sizesToScaff.pl, sorted_merge, spades-gfa-split, splitFileAtNs, splitFileByPrefix.pl, splitLongKUnitigs.pl, splitScaffoldsAtNs.pl, splitScaffoldsAtNs.sh, split_long_unitigs.pl, split_matches_file.pl, split_mate_pairs, split_reads_to_join.pl, split_sequences.py, sra-info, sra-info.3, sra-info.3.2.0, sra-pileup-orig.3.2.0, sra-pileup.3, sra-pileup.3.2.0, sra-search, sra-search.3, sra-search.3.2.0, sra-stat.3, sra-stat.3.2.0, srapath-orig.3.2.0, srapath.3, srapath.3.2.0, sratools.3, sratools.3.2.0, stats3.sh, sub.sh, syntax_suggest, tagandmerge.sh, test-sra.3, test-sra.3.2.0, tgsgapcloser, tiledump.sh, train.sh, translateReduceFile.perl, translate_reduced_reads.pl, treeshrink, trim_by_kunitigs.pl, trim_mega_reads.pl, trimcontigs.sh, typeprof, uclampset, ufasta, var-expand, var-expand.3, var-expand.3.2.0, vdb-config.3, vdb-config.3.2.0, vdb-decrypt.3, vdb-decrypt.3.2.0, vdb-dump-orig.3.2.0, vdb-dump.3, vdb-dump.3.2.0, vdb-encrypt.3, vdb-encrypt.3.2.0, vdb-validate.3, vdb-validate.3.2.0, yaggo, zipcloak, zipnote, zipsplit, bloomfilterparser.sh, checksum-profile, elastishadow, lrunzip, lrzcat, lrzip, lrztar, lrzuntar, abyss-stack-size, icarus.py, metaquast, metaquast.py, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, split_fa, coronaspades.py, metaplasmidspades.py, metaviralspades.py, rnaviralspades.py, scriptlive, Xcalcmem.sh
GITHUB quay.io/biocontainers/egglib shpc-registry automated BioContainers addition for egglib 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/eggnog-mapper shpc-registry automated BioContainers addition for eggnog-mapper create_dbs.py, download_eggnog_data.py, emapper.py, hmm_mapper.py, hmm_server.py, hmm_worker.py, mmseqs, vba_extract.py, gawk-5.1.0, awk, gawk, diamond, prodigal, hmmpgmd_shard, easel, esl-mixdchlet
GITHUB quay.io/biocontainers/eider singularity registry hpc automated addition for eider eider, jwebserver, jpackage, cups-config, ippeveprinter, ipptool, hb-info, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo
GITHUB quay.io/biocontainers/eigensoft shpc-registry automated BioContainers addition for eigensoft baseprog, convertf, eigenstrat, eigenstratQTL, mergeit, pca, pcatoy, smarteigenstrat, smartpca, smartrel, smshrink, twstats, perl5.32.1, streamzip
GITHUB quay.io/biocontainers/eigenstratdatabasetools shpc-registry automated BioContainers addition for eigenstratdatabasetools eigenstrat_database_tools, eigenstrat_rename_snps, eigenstrat_snp_coverage, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/eklipse singularity registry hpc automated addition for eklipse J01415.2.gb, NC_005089.1.gb, NC_012920.1.gb, eKLIPse.py, eKLIPse_circos.py, eKLIPse_fct.py, eKLIPse_fig2.png, eKLIPse_init.py, eKLIPse_sc.py, eKLIPse_threading.py, eKLIPse_userGuide.pdf, eklipseHeader.png, eklipse_home.png, eklipse_results.png, eklipse_select.png, eklipse_waiting.png, pl2bat.pl, pybam.py, spinner.py, tabulate.py, test_illumina.bam, test_illumina.bam.bai, test_proton.bam, test_proton.bam.bai, circos, circos.exe, compile.bat, compile.make, gddiag, list.modules, test.modules, test_pcre, config_data, tjbench, bdf2gdfont.pl, f2py2, f2py2.7, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh
GITHUB quay.io/biocontainers/el_gato singularity registry hpc automated addition for el_gato el_gato.py, elgato_report.py, gfPcr, isPcr, run_el_gato.nf, jwebserver, gfServer, nextflow.bak, nextflow, blastn_vdb, tblastn_vdb, test_pcre, basenc, b2sum, ls, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date
GITHUB quay.io/biocontainers/elastic-blast shpc-registry automated BioContainers addition for elastic-blast aws, aws-create-elastic-blast-janitor-role.sh, aws-delete-elastic-blast-janitor-role.sh, aws-describe-elastic-blast-janitor-role.sh, aws-get-auto-scaling-events.sh, aws-show-my-undeleted-searches.sh, aws.cmd, aws_bash_completer, aws_completer, aws_zsh_completer.sh, awslimitchecker, blast-tuner.py, bq, cleanup-stale-gcp-resources.py, create-blastdb-metadata.py, docker-credential-gcloud, elastic-blast, elb-cost.py, fasta_split.py, gcloud, gcp-setup-elastic-blast-janitor.sh, gcp-show-my-undeleted-searches.sh, gcp_ram_size.py, kubectl, publish.py, results2clustername.sh, gsutil, jp.py, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, rst2html4.py, rst2html5.py
GITHUB quay.io/biocontainers/elasticluster shpc-registry automated BioContainers addition for elasticluster ansible, ansible-doc, ansible-galaxy, ansible-playbook, ansible-pull, ansible-vault, elasticluster, gflags2man.py, pyrsa-decrypt-bigfile, pyrsa-encrypt-bigfile, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin
GITHUB quay.io/biocontainers/elector shpc-registry automated BioContainers addition for elector Donatello, elector, fq2fa, masterSplitter, poa, simulator, sdust, paftools.js, minimap2, k8, f2py3.6, fasta-sanitize.pl, plot-ampliconstats, 2to3-3.6, idle3.6, pydoc3.6
GITHUB quay.io/biocontainers/elprep shpc-registry automated BioContainers addition for elprep elprep
GITHUB quay.io/biocontainers/ema shpc-registry automated BioContainers addition for ema ema
GITHUB quay.io/biocontainers/embassy-phylip shpc-registry automated BioContainers addition for embassy-phylip _fclique, _fconsense, _fcontml, _fcontrast, _fdiscboot, _fdnacomp, _fdnadist, _fdnainvar, _fdnaml, _fdnamlk, _fdnamove, _fdnapars, _fdnapenny, _fdollop, _fdolmove, _fdolpenny, _fdrawgram, _fdrawtree, _ffactor, _ffitch, _ffreqboot, _fgendist, _fkitsch, _fmix, _fmove, _fneighbor, _fpars, _fpenny, _fproml, _fpromlk, _fprotdist, _fprotpars, _frestboot, _frestdist, _frestml, _fretree, _fseqboot, _fseqbootall, _ftreedist, _ftreedistpair, fclique, fconsense, fcontml, fcontrast, fdiscboot, fdnacomp, fdnadist, fdnainvar, fdnaml, fdnamlk, fdnamove, fdnapars, fdnapenny, fdollop, fdolmove, fdolpenny, fdrawgram, fdrawtree, ffactor, ffitch, ffreqboot, fgendist, fkitsch, fmix, fmove, fneighbor, fpars, fpenny, fproml, fpromlk, fprotdist, fprotpars, frestboot, frestdist, frestml, fretree, fseqboot, fseqbootall, ftreedist, ftreedistpair, _aaindexextract, _abiview, _acdc, _acdpretty, _acdtable, _acdtrace, _acdvalid, _antigenic, _backtranambig, _backtranseq
GITHUB quay.io/biocontainers/embl-api-validator shpc-registry automated BioContainers addition for embl-api-validator embl-api-validator, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd
GITHUB quay.io/biocontainers/emblmygff3 shpc-registry automated BioContainers addition for emblmygff3 EMBLmyGFF3, EMBLmyGFF3-augustus-example, EMBLmyGFF3-maker-example, EMBLmyGFF3-prokka-example, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py
GITHUB quay.io/biocontainers/emboss shpc-registry automated BioContainers addition for emboss embossdata, embossupdate, embossversion, jembossctl, runJemboss.sh, xmlget, xmltext, aaindexextract, abiview, acdc, acdgalaxy, acdlog, acdpretty, acdtable, acdtrace, acdvalid, aligncopy, aligncopypair, antigenic, assemblyget, backtranambig, backtranseq, banana, biosed, btwisted, cachedas, cachedbfetch, cacheebeyesearch, cacheensembl, chaos, charge, checktrans, cirdna, codcmp, codcopy, coderet, compseq, cons, consambig, cpgplot, cpgreport, cusp, cutgextract, cutseq, dan, dbiblast, dbifasta, dbiflat, dbigcg, dbtell, dbxcompress, dbxedam, dbxfasta, dbxflat, dbxgcg, dbxobo, dbxreport, dbxresource, dbxstat, dbxtax, dbxuncompress, degapseq, density, descseq, diffseq, distmat, dotmatcher, dotpath, dottup, dreg, drfinddata, drfindformat, drfindid, drfindresource, drget, drtext, edamdef, edamhasinput, edamhasoutput, edamisformat, edamisid, edamname, edialign, einverted, emma, emowse, entret, epestfind, eprimer3, eprimer32, equicktandem, est2genome, etandem, extractalign, extractfeat, featcopy, featmerge, featreport, feattext, findkm, freak, fuzznuc, fuzzpro, fuzztran, garnier
GITHUB quay.io/biocontainers/emeraldbgc shpc-registry automated BioContainers addition for emeraldbgc emerald_build_gb, emeraldbgc, import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2
GITHUB quay.io/biocontainers/emirge shpc-registry automated BioContainers addition for emirge emirge.py, emirge_amplicon.py, emirge_makedb.py, emirge_rename_fasta.py, vsearch, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect
GITHUB quay.io/biocontainers/emmix shpc-registry automated BioContainers addition for emmix EMMIX
GITHUB quay.io/biocontainers/emmtyper shpc-registry automated BioContainers addition for emmtyper
GITHUB quay.io/biocontainers/emperor shpc-registry automated BioContainers addition for emperor make_emperor.py, qcli_make_rst, qcli_make_script, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/emptydrops shpc-registry automated BioContainers addition for emptydrops f2py3.9, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug
GITHUB quay.io/biocontainers/emu-pca singularity registry hpc automated addition for emu-pca emu, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config
GITHUB quay.io/biocontainers/emu shpc-registry automated BioContainers addition for emu bioawk, emu, sdust, paftools.js, minimap2, k8, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10
GITHUB quay.io/biocontainers/emvc-2 singularity registry hpc automated addition for emvc-2 candidate_variants_finder, emvc-2, f2py3.8, tqdm, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim, wgsim_eval.pl, samtools, 2to3-3.8, idle3.8, pydoc3.8
GITHUB quay.io/biocontainers/ena-dl shpc-registry automated BioContainers addition for ena-dl ena-dl, chardetect, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/ena-upload-cli shpc-registry automated BioContainers addition for ena-upload-cli ena-upload-cli, xml2-config.bak, normalizer, xslt-config, xsltproc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10
GITHUB quay.io/biocontainers/ena-webin-cli shpc-registry automated BioContainers addition for ena-webin-cli ena-webin-cli, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer
GITHUB quay.io/biocontainers/enabrowsertools shpc-registry automated BioContainers addition for enabrowsertools assemblyGet.py, enaDataGet, enaDataGet.py, enaGroupGet, enaGroupGet.py, readGet.py, sequenceGet.py, utils.py, utils_py2.py, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/enano shpc-registry automated BioContainers addition for enano enano
GITHUB quay.io/biocontainers/enasearch shpc-registry automated BioContainers addition for enasearch enasearch, flake8, pycodestyle, pyflakes, f2py2, f2py2.7, chardetect, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/encode-blacklist shpc-registry automated BioContainers addition for encode-blacklist Blacklist, bamtools
GITHUB quay.io/biocontainers/encyclopedia shpc-registry automated BioContainers addition for encyclopedia EncyclopeDIA, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/endorspy shpc-registry automated BioContainers addition for endorspy endorspy, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/enrichm shpc-registry automated BioContainers addition for enrichm chronic, combine, enrichm, errno, ifdata, ifne, isutf8, lckdo, mispipe, pee, seqmagick, sponge, ts, vidir, vipe, zrun, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray, mcxassemble
GITHUB quay.io/biocontainers/ensembl-genomio singularity registry hpc automated addition for ensembl-genomio annotation_update_description, assembly_download, assembly_tracker, database_factory, events_dump, events_format, events_load, extract_file, fasta_chunk, fasta_process, genbank_download, genbank_extract_data, genome_metadata_dump, genome_metadata_extend, genome_metadata_prepare, genome_stats_compare, genome_stats_dump, gff3_overlaps, gff3_process, manifest_check_integrity, manifest_compute_stats, manifest_generate, query_db_meta, schemas_json_factory, schemas_json_validate, seq_region_dump, seq_region_prepare, spython, dotenv, pybabel, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py, bed_count_overlapping.py, bed_coverage.py, bed_coverage_by_interval.py, bed_diff_basewise_summary.py, bed_extend_to.py, bed_intersect.py, bed_intersect_basewise.py, bed_merge_overlapping.py, bed_rand_intersect.py, bed_subtract_basewise.py, bnMapper.py, div_snp_table_chr.py, find_in_sorted_file.py
GITHUB quay.io/biocontainers/ensembl-utils singularity registry hpc automated addition for ensembl-utils dotenv, extract_file, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, normalizer
GITHUB quay.io/biocontainers/ensembl-vep shpc-registry automated BioContainers addition for ensembl-vep filter_vep, haplo, variant_recoder, vep, vep_convert_cache, vep_install, giffilter, gifsponge, unzip, gifecho, gifinto, gdlib-config, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee
GITHUB quay.io/biocontainers/entrez-direct shpc-registry automated BioContainers addition for entrez-direct asp-ls.bak, edirect.pl.bak, edirutil.bak, erase-pubmed, ftp-cp.bak, ftp-ls.bak, gbf2xml.bak, get-stash-uids, invert-pubmed, log-pubmed, master-pubmed, merge-pubmed, nquire.bak, prepare-stash, promote-pubmed, refresh-versioned, repack-pubmed, run-ncbi-converter.bak, setup-deps.pl.bak, setup.sh.orig, stash-pubmed, common.go, rchive.go, setup-deps.log, setup.sh, xtract.go, asp-cp, asp-ls, has-asp, index-pubmed, eaddress
GITHUB quay.io/biocontainers/entrezpy shpc-registry automated BioContainers addition for entrezpy 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/eoulsan shpc-registry automated BioContainers addition for eoulsan eoulsan.sh, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/epa-ng shpc-registry automated BioContainers addition for epa-ng epa-ng
GITHUB quay.io/biocontainers/ephemeris shpc-registry automated BioContainers addition for ephemeris bioblend-galaxy-tests, galaxy-tool-test, galaxy-wait, get-tool-list, mulled-build, mulled-build-channel, mulled-build-files, mulled-build-tool, mulled-search, run-data-managers, setup-data-libraries, shed-tools, workflow-install, workflow-to-tools, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier
GITHUB quay.io/biocontainers/epic shpc-registry automated BioContainers addition for epic
GITHUB quay.io/biocontainers/epic2 shpc-registry automated BioContainers addition for epic2 epic2, epic2-bw, epic2-df, natsort, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6
GITHUB quay.io/biocontainers/epicseg shpc-registry automated BioContainers addition for epicseg
GITHUB quay.io/biocontainers/epik singularity registry hpc automated addition for epik epik-aa, epik-dna, epik.py, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config
GITHUB quay.io/biocontainers/epimuller shpc-registry automated BioContainers addition for epimuller cairosvg, epimuller, epimuller-define, epimuller-draw, epimuller-parse, ete3, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util
GITHUB quay.io/biocontainers/episcanpy singularity registry hpc automated addition for episcanpy dunamai, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, scanpy, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, pt2to3, ptdump, ptrepack, pttree, numba, pycc, natsort, mirror_server, mirror_server_stop, rst2html4.py, rst2html5.py, rst2html.py
GITHUB quay.io/biocontainers/epiweeks shpc-registry automated BioContainers addition for epiweeks 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/epydoc shpc-registry automated BioContainers addition for epydoc apirst2html.py, epydoc, epydocgui, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/epytope shpc-registry automated BioContainers addition for epytope _mhcflurry-cluster-worker-entry-point, mhcflurry-calibrate-percentile-ranks, mhcflurry-class1-select-allele-specific-models, mhcflurry-class1-select-pan-allele-models, mhcflurry-class1-train-allele-specific-models, mhcflurry-class1-train-pan-allele-models, mhcflurry-downloads, mhcflurry-predict, pyomo, theano-cache, theano-nose, freeze_graph, mako-render, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin
GITHUB quay.io/biocontainers/eqtlbma shpc-registry automated BioContainers addition for eqtlbma eqtlbma_avg_bfs, eqtlbma_bf, eqtlbma_bf_parallel.bash, eqtlbma_hm, tutorial_eqtlbma.R, x86_64-conda-linux-gnu-gfortran.bin, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/equirep singularity registry hpc automated addition for equirep EquiRep
GITHUB quay.io/biocontainers/erds shpc-registry automated BioContainers addition for erds erds_pipeline, perl5.22.0, c2ph, pstruct, bcftools, vcfutils.pl, samtools, podselect
GITHUB quay.io/biocontainers/ericscript shpc-registry automated BioContainers addition for ericscript ericscript.pl, blat, seqtk, perl5.32.0, qualfa2fq.pl, xa2multi.pl, bwa, bcftools, vcfutils.pl, shiftBed, annotateBed
GITHUB quay.io/biocontainers/erne shpc-registry automated BioContainers addition for erne erne-bs5, erne-create, erne-filter, erne-map, erne-meth, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/ervdetective singularity registry hpc automated addition for ervdetective ervdetective, genometools-config, gt, just-first-key, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gbf2fsa, gbf2ref, gm2ranges
GITHUB quay.io/biocontainers/ervmancer singularity registry hpc automated addition for ervmancer ervmancer, annot-tsv, idle3.13, pydoc3.13, python3.13, python3.13-config, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, numpy-config, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed
GITHUB quay.io/biocontainers/escher shpc-registry automated BioContainers addition for escher ccache-swig, isympy, pipdeptree, swig, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run, iptest3, curve_keygen
GITHUB quay.io/biocontainers/esimsa shpc-registry automated BioContainers addition for esimsa esimsa
GITHUB quay.io/biocontainers/eskrim singularity registry hpc automated addition for eskrim eskrim, jellyfish, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config
GITHUB quay.io/biocontainers/esme_esmf_mpich_4_2_3 singularity registry hpc automated addition for esme_esmf_mpich_4_2_3 ESMF_PrintInfo, ESMF_PrintInfoC, ESMF_Regrid, ESMF_RegridWeightGen, ESMF_Scrip2Unstruct, ESMF_WebServController, ESMX_Builder, cdfdiff, chacl, getfacl, h5pcc, h5perf, h5pfc, nc4print, ncmpidiff, ncmpidump, ncmpigen, ncoffsets, ncvalidator, ocprint, ph5diff, pnetcdf-config, pnetcdf_version, setfacl, h5fuse, ucx_perftest_daemon, nf-config, mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add
GITHUB quay.io/biocontainers/esme_esmf_openmpi_4_1_6 singularity registry hpc automated addition for esme_esmf_openmpi_4_1_6 ESMF_PrintInfo, ESMF_PrintInfoC, ESMF_Regrid, ESMF_RegridWeightGen, ESMF_Scrip2Unstruct, ESMF_WebServController, ESMX_Builder, cdfdiff, chacl, getfacl, h5pcc, h5perf, h5pfc, nc4print, ncmpidiff, ncmpidump, ncmpigen, ncoffsets, ncvalidator, ocprint, ph5diff, pnetcdf-config, pnetcdf_version, setfacl, h5fuse, nf-config, shmemrun, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun, shmemcc, shmemfort, attr, getfattr, setfattr, aggregate_profile.pl, profile2mat.pl, ompi-clean, ompi-server, orte-clean, orte-info, orte-server
GITHUB quay.io/biocontainers/esme_hdf5_mpich_4_2_3 singularity registry hpc automated addition for esme_hdf5_mpich_4_2_3 chacl, getfacl, h5pcc, h5perf, h5pfc, mpiexec.gforker, ph5diff, setfacl, h5fuse, ucx_perftest_daemon, mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete
GITHUB quay.io/biocontainers/esme_hdf5_openmpi_5_0_7 singularity registry hpc automated addition for esme_hdf5_openmpi_5_0_7 chacl, getfacl, h5pcc, h5perf, h5pfc, ph5diff, prte, prte_info, prted, prterun, pterm, setfacl, ucc_info, prun, h5fuse, ucx_perftest_daemon, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup
GITHUB quay.io/biocontainers/esme_mpich_4_2_3 singularity registry hpc automated addition for esme_mpich_4_2_3 ESMF_PrintInfo, ESMF_PrintInfoC, ESMF_Regrid, ESMF_RegridWeightGen, ESMF_Scrip2Unstruct, ESMF_WebServController, ESMX_Builder, cdfdiff, chacl, getfacl, h5pcc, h5perf, h5pfc, nc4print, ncmpidiff, ncmpidump, ncmpigen, ncoffsets, ncvalidator, ocprint, ph5diff, pnetcdf-config, pnetcdf_version, setfacl, gost12-256-hash, gost12-512-hash, h5fuse, edonr256-hash, edonr512-hash, ccmake, cmake, cpack, ctest, ed2k-link, has160-hash, magnet-link, rhash, sfv-hash, tiger-hash, tth-hash, ucx_perftest_daemon, whirlpool-hash, nf-config, mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy
GITHUB quay.io/biocontainers/esme_netcdf-c_mpich_4_2_3 singularity registry hpc automated addition for esme_netcdf-c_mpich_4_2_3 mpiexec.gforker, nc4print, ocprint, ucx_perftest_daemon, mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list
GITHUB quay.io/biocontainers/esme_netcdf-fortran_openmpi_4_1_6 singularity registry hpc automated addition for esme_netcdf-fortran_openmpi_4_1_6 nf-config, shmemrun, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun, shmemcc, shmemfort, aggregate_profile.pl, profile2mat.pl, ompi-clean, ompi-server, orte-clean, orte-info, orte-server, ortecc, orted, orterun, mpiCC
GITHUB quay.io/biocontainers/esme_netcdf-fortran_openmpi_5_0_6 singularity registry hpc automated addition for esme_netcdf-fortran_openmpi_5_0_6 prte, prte_info, prted, prterun, pterm, ucc_info, prun, ucx_perftest_daemon, nf-config, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup
GITHUB quay.io/biocontainers/esme_netcdf-fortran_openmpi_5_0_7 singularity registry hpc automated addition for esme_netcdf-fortran_openmpi_5_0_7 prte, prte_info, prted, prterun, pterm, ucc_info, prun, ucx_perftest_daemon, nf-config, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup
GITHUB quay.io/biocontainers/esme_omb_mpich_4_2_3 singularity registry hpc automated addition for esme_omb_mpich_4_2_3 ucx_perftest_daemon, mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list
GITHUB quay.io/biocontainers/esme_omb_openmpi_4_1_6 singularity registry hpc automated addition for esme_omb_openmpi_4_1_6 shmemrun, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun, shmemcc, shmemfort, aggregate_profile.pl, profile2mat.pl, ompi-clean, ompi-server, orte-clean, orte-info, orte-server, ortecc, orted, orterun, mpiCC, ompi_info
GITHUB quay.io/biocontainers/esme_omb_openmpi_5_0_6 singularity registry hpc automated addition for esme_omb_openmpi_5_0_6 prte, prte_info, prted, prterun, pterm, ucc_info, prun, ucx_perftest_daemon, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave
GITHUB quay.io/biocontainers/esme_omb_openmpi_5_0_7 singularity registry hpc automated addition for esme_omb_openmpi_5_0_7 prte, prte_info, prted, prterun, pterm, ucc_info, prun, ucx_perftest_daemon, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave
GITHUB quay.io/biocontainers/esme_openmpi_4_1_6 singularity registry hpc automated addition for esme_openmpi_4_1_6 ESMF_PrintInfo, ESMF_PrintInfoC, ESMF_Regrid, ESMF_RegridWeightGen, ESMF_Scrip2Unstruct, ESMF_WebServController, ESMX_Builder, cdfdiff, chacl, getfacl, h5pcc, h5perf, h5pfc, nc4print, ncmpidiff, ncmpidump, ncmpigen, ncoffsets, ncvalidator, ocprint, ph5diff, pnetcdf-config, pnetcdf_version, setfacl, gost12-256-hash, gost12-512-hash, h5fuse, edonr256-hash, edonr512-hash, ccmake, cmake, cpack, ctest, ed2k-link, has160-hash, magnet-link, rhash, sfv-hash, tiger-hash, tth-hash, whirlpool-hash, nf-config, shmemrun, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx
GITHUB quay.io/biocontainers/esme_pio_mpich_4_2_3 singularity registry hpc automated addition for esme_pio_mpich_4_2_3 mpiexec.gforker, ucx_perftest_daemon, mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list
GITHUB quay.io/biocontainers/esme_pio_openmpi_4_1_6 singularity registry hpc automated addition for esme_pio_openmpi_4_1_6 shmemrun, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun, shmemcc, shmemfort, aggregate_profile.pl, profile2mat.pl, ompi-clean, ompi-server, orte-clean, orte-info, orte-server, ortecc, orted, orterun, mpiCC, ompi_info
GITHUB quay.io/biocontainers/esme_pio_openmpi_5_0_7 singularity registry hpc automated addition for esme_pio_openmpi_5_0_7 prte, prte_info, prted, prterun, pterm, ucc_info, prun, ucx_perftest_daemon, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave
GITHUB quay.io/biocontainers/esme_pnetcdf_mpich_4_2_3 singularity registry hpc automated addition for esme_pnetcdf_mpich_4_2_3 cdfdiff, mpiexec.gforker, ncmpidiff, ncmpidump, ncmpigen, ncoffsets, ncvalidator, pnetcdf-config, pnetcdf_version, ucx_perftest_daemon, mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list
GITHUB quay.io/biocontainers/esme_pnetcdf_openmpi_4_1_6 singularity registry hpc automated addition for esme_pnetcdf_openmpi_4_1_6 cdfdiff, ncmpidiff, ncmpidump, ncmpigen, ncoffsets, ncvalidator, pnetcdf-config, pnetcdf_version, shmemrun, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun, shmemcc, shmemfort, aggregate_profile.pl, profile2mat.pl, ompi-clean, ompi-server, orte-clean, orte-info, orte-server, ortecc, orted, orterun, mpiCC, ompi_info
GITHUB quay.io/biocontainers/esme_pnetcdf_openmpi_5_0_6 singularity registry hpc automated addition for esme_pnetcdf_openmpi_5_0_6 cdfdiff, ncmpidiff, ncmpidump, ncmpigen, ncoffsets, ncvalidator, pnetcdf-config, pnetcdf_version, prte, prte_info, prted, prterun, pterm, ucc_info, prun, ucx_perftest_daemon, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave
GITHUB quay.io/biocontainers/esme_pnetcdf_openmpi_5_0_7 singularity registry hpc automated addition for esme_pnetcdf_openmpi_5_0_7 cdfdiff, ncmpidiff, ncmpidump, ncmpigen, ncoffsets, ncvalidator, pnetcdf-config, pnetcdf_version, prte, prte_info, prted, prterun, pterm, ucc_info, prun, ucx_perftest_daemon, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave
GITHUB quay.io/biocontainers/esmre shpc-registry automated BioContainers addition for esmre python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/espresso singularity registry hpc automated addition for espresso ESPRESSO_C.pl, ESPRESSO_Q.pl, ESPRESSO_Q_Thread.pm, ESPRESSO_S.pl, ESPRESSO_Version.pm, test_pcre, hmmpgmd_shard, easel, esl-mixdchlet, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn, esl-seqrange, esl-seqstat
GITHUB quay.io/biocontainers/est-sfs singularity registry hpc automated addition for est-sfs est-sfs
GITHUB quay.io/biocontainers/estscan shpc-registry automated BioContainers addition for estscan estscan
GITHUB quay.io/biocontainers/esviritu singularity registry hpc automated addition for esviritu EsViritu, bioawk, bwa-mem2, bwa-mem2.avx, bwa-mem2.avx2, bwa-mem2.avx512bw, bwa-mem2.sse41, bwa-mem2.sse42, coverm, dadaist2-mergeseqs, dashing, fu-16Sregion, fu-cov, fu-homocomp, fu-index, fu-msa, fu-multirelabel, fu-nanotags, fu-orf, fu-primers, fu-shred, fu-split, fu-sw, fu-tabcheck, fu-virfilter, hb-info, remove_minimap2_duplicated_headers, seqfu, starcode, fastANI, seqkit, fastp, test_pcre, tjbench, igzip, f2py3.11, sdust, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, k8, paftools.js, minimap2, qualfa2fq.pl, xa2multi.pl, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table
GITHUB quay.io/biocontainers/eta shpc-registry automated BioContainers addition for eta 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/ete2 shpc-registry automated BioContainers addition for ete2 ete, pylupdate4, pyrcc4, pyuic4, qdoc3, qmlviewer, qt3to4, qtconfig, qttracereplay, my_print_defaults, mysql_config, perror, qhelpconverter, f2py2, f2py2.7, sip, xslt-config, xsltproc, assistant
GITHUB quay.io/biocontainers/ete3 shpc-registry automated BioContainers addition for ete3 ete3, qhelpconverter, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner, repc, pylupdate5, pyrcc5
GITHUB quay.io/biocontainers/eternafold singularity registry hpc automated addition for eternafold eternafold
GITHUB quay.io/biocontainers/etoki singularity registry hpc automated addition for etoki EToKi.py, GenomeAnalysisTK, SimBac, Xcalcmem.sh, attr, balsam, coronaspades.py, esdcompat, fasta-nr, fastq-interleave, flye, flye-minimap2, flye-modules, flye-samtools, gatk-register, getfattr, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, kraken2, kraken2-build, kraken2-inspect, last-dotplot, last-map-probs, last-merge-batches, last-pair-probs, last-postmask, last-split, last-split5, last-train, lastal, lastal5, lastdb, lastdb5, lprodump, lrelease-pro, lupdate-pro, maf-convert, maf-cut, maf-join, maf-sort, maf-swap, meshdebug, metaplasmidspades.py, metaviralspades.py, nextPolish, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parallel-fasta, parallel-fastq, paralleltask, parec, parecord, pasuspender, pilercr, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, rapidnj, raxml-ng, raxml-ng-mpi, rnaviralspades.py, seq_count, seq_split, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, flac, gatk, kmutate.sh, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, metaflac, rsync-ssl, runhmm.sh, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, megahit, megahit_toolkit, pilon, trf4.10.0-rc.2.linux64.exe, kmerposition.sh, reformatpb.sh
GITHUB quay.io/biocontainers/eukcc shpc-registry automated BioContainers addition for eukcc binlinks.py, epa-ng, eukcc, filter_euk_bins.py, metaeuk, shared_markers, rppr, guppy, pplacer, ete3, gawk-5.1.0, xkbcli, awk, gawk, pg_config, qdistancefieldgenerator
GITHUB quay.io/biocontainers/eukfinder singularity registry hpc automated addition for eukfinder Eukfinder.py, acc2tax, centrifuge, centrifuge-BuildSharedSequence.pl, centrifuge-RemoveEmptySequence.pl, centrifuge-RemoveN.pl, centrifuge-build, centrifuge-build-bin, centrifuge-class, centrifuge-compress.pl, centrifuge-download, centrifuge-inspect, centrifuge-inspect-bin, centrifuge-kreport, centrifuge-sort-nt.pl, centrifuge_evaluate.py, centrifuge_simulate_reads.py, eukfinder, plast, coronaspades.py, metaplasmidspades.py, metaviralspades.py, rnaviralspades.py, seqkit, cds-mapping-stats, cds-subgraphs, mag-improve, spades-convert-bin-to-fasta, spades-gsimplifier, spades-kmer-estimating, spades-read-filter, spaligner, spades-bwa, spades-core, spades-corrector-core, spades-gbuilder, spades-gmapper, spades-hammer, spades-ionhammer, spades-kmercount, spades-truseq-scfcorrection, trimmomatic, metaspades.py, plasmidspades.py
GITHUB quay.io/biocontainers/eukrep shpc-registry automated BioContainers addition for eukrep EukRep, kpal, futurize, pasteurize, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config
GITHUB quay.io/biocontainers/eukulele shpc-registry automated BioContainers addition for eukulele EUKulele, after_job.sh, concatenate_busco.sh, configure_busco.sh, coordinate_batch.sh, create_protein_table.py, download_database.sh, install_dependencies.sh, run_busco.sh, test_pcre, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, diamond, seedtop, idn2, blast_formatter, blastdb_aliastool
GITHUB quay.io/biocontainers/eva-sub-cli singularity registry hpc automated addition for eva-sub-cli archive_directory.py, biovalidator, check_fasta_insdc.py, eva-sub-cli.py, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, samples_checker.py, vcf_assembly_checker, vcf_validator, xlsx2json.py, corepack, nextflow.bak, npx, nextflow, node, npm, jwebserver, basenc, b2sum, ls, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date
GITHUB quay.io/biocontainers/eval shpc-registry automated BioContainers addition for eval RangeFinder.py, combine_eval_reports.pl, eval.pl, evaluate_gtf.pl, filter_badlist.pl, filter_gtfs.pl, get_distribution.pl, get_general_stats.pl, get_overlap_stats.pl, gff3_to_gtf.pl, graph_gtfs.pl, make_intron_lenght_vs_performance_graph.pl, merge_gtf_transcripts.py, validate_gtf.pl, validate_splice_sites.pl, bp_pairwise_kaks.pl, bp_search2BSML.pl, bp_aacomp.pl, bp_biofetch_genbank_proxy.pl, bp_bioflat_index.pl, bp_biogetseq.pl, bp_blast2tree.pl, bp_bulk_load_gff.pl, bp_chaos_plot.pl, bp_classify_hits_kingdom.pl
GITHUB quay.io/biocontainers/evidencemodeler shpc-registry automated BioContainers addition for evidencemodeler evidence_modeler.pl, perl5.26.2, podselect
GITHUB quay.io/biocontainers/evigene singularity registry hpc automated addition for evigene esd2esi, exonerate, exonerate-server, fasta2esd, fastaannotatecdna, fastachecksum, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasubseq, fastatranslate, fastavalidcds, ipcress, fastaclean, fastasplit, blastn_vdb, tblastn_vdb, uuid, uuid-config, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div, cd-hit-div.pl, cd-hit-est-2d, cd-hit-para.pl, clstr2tree.pl, clstr2txt.pl, clstr2xml.pl, clstr_cut.pl, clstr_merge.pl, clstr_merge_noorder.pl, clstr_quality_eval.pl
GITHUB quay.io/biocontainers/evofold2 shpc-registry automated BioContainers addition for evofold2 EvoFoldV2, EvoFoldV2.sh, dfgEval, dfgTrain, grammarTrain, multinomial
GITHUB quay.io/biocontainers/evofr singularity registry hpc automated addition for evofr f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, protoc, normalizer, tqdm, python3.1
GITHUB quay.io/biocontainers/examine shpc-registry automated BioContainers addition for examine examine, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/excludonfinder singularity registry hpc automated addition for excludonfinder ExcludonFinder, bwa-mem2, bwa-mem2.avx, bwa-mem2.avx2, bwa-mem2.avx512bw, bwa-mem2.sse41, bwa-mem2.sse42, exactSNP, featureCounts, flattenGTF, genRandomReads, propmapped, qualityScores, removeDup, repair, subindel, subjunc, sublong, subread-align, subread-buildindex, subread-fullscan, x86_64-conda-linux-gnu.cfg, annot-tsv, idle3.13, pydoc3.13, python3.13, python3.13-config, parsort, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh, env_parallel.pdksh, env_parallel.sh, env_parallel.tcsh, env_parallel.zsh, niceload, parcat, parset, sem, sql, parallel
GITHUB quay.io/biocontainers/exomiser-rest-prioritiser shpc-registry automated BioContainers addition for exomiser-rest-prioritiser exomiser-rest-prioritiser, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/exonerate shpc-registry automated BioContainers addition for exonerate esd2esi, exonerate, exonerate-server, fasta2esd, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds, ipcress, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/expam singularity registry hpc automated addition for expam expam, expam_limit, pt2to3, ptdump, ptrepack, pttree, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, f2py3.9, opj_compress, opj_decompress, opj_dump, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import
GITHUB quay.io/biocontainers/expansionhunter shpc-registry automated BioContainers addition for expansionhunter ExpansionHunter, f2py3.8, htsfile, bgzip, tabix, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/expansionhunterdenovo shpc-registry automated BioContainers addition for expansionhunterdenovo ExpansionHunterDenovo, ccmake, cmake, cpack, ctest, ed2k-link, edonr256-hash, edonr512-hash, gost12-256-hash, gost12-512-hash, has160-hash, magnet-link, rhash, sfv-hash, tiger-hash, tth-hash, whirlpool-hash, htsfile, bgzip, tabix, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/exparna shpc-registry automated BioContainers addition for exparna ExpaRNA, RNAmultifold, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold
GITHUB quay.io/biocontainers/expat shpc-registry automated BioContainers addition for expat
GITHUB quay.io/biocontainers/export2graphlan shpc-registry automated BioContainers addition for export2graphlan export2graphlan.py, hclust2.py, compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, f2py2
GITHUB quay.io/biocontainers/express shpc-registry automated BioContainers addition for express express
GITHUB quay.io/biocontainers/expressbetadiversity shpc-registry automated BioContainers addition for expressbetadiversity AbstractPlot.py, ExpressBetaDiversity, convertToEBD.py, convertToFullMatrix.py, pcoaPlot.py, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp
GITHUB quay.io/biocontainers/extern shpc-registry automated BioContainers addition for extern python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/extract-codon-alignment shpc-registry automated BioContainers addition for extract-codon-alignment extract_codon_alignment, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/extract-sv-reads shpc-registry automated BioContainers addition for extract-sv-reads extract-sv-reads, htsfile, bgzip, tabix, perl5.32.1, streamzip
GITHUB quay.io/biocontainers/extract_fasta_seq shpc-registry automated BioContainers addition for extract_fasta_seq extract_fasta_seq, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/extract_fullseq shpc-registry automated BioContainers addition for extract_fullseq extract_fullseq
GITHUB quay.io/biocontainers/extract_genome_region shpc-registry automated BioContainers addition for extract_genome_region extract_genome_region, faidx, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/extract_vcf singularity registry hpc automated addition for extract_vcf 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/extracthifi shpc-registry automated BioContainers addition for extracthifi extracthifi
GITHUB quay.io/biocontainers/extractpirs shpc-registry automated BioContainers addition for extractpirs extractPIRs
GITHUB quay.io/biocontainers/ezaai singularity registry hpc automated addition for ezaai EzAAI, mmseqs, clhsdb, hsdb, gawk-5.1.0, awk, gawk, diamond, prodigal, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns
GITHUB quay.io/biocontainers/ezcharts singularity registry hpc automated addition for ezcharts ezcharts, pymsaviz, pysassc, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, bokeh, py.test, pytest, natsort, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fonttools, pyftmerge, pyftsubset, ttx, tjbench, brotli, opj_compress, opj_decompress, opj_dump
GITHUB quay.io/biocontainers/ezclermont shpc-registry automated BioContainers addition for ezclermont ezclermont, coverage, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/ezomero singularity registry hpc automated addition for ezomero omero, slice2py, futurize, pasteurize, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, jpgicc, linkicc, psicc, tificc, transicc
GITHUB quay.io/biocontainers/f5c shpc-registry automated BioContainers addition for f5c f5c, mirror_server, mirror_server_stop, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy
GITHUB quay.io/biocontainers/fadapa shpc-registry automated BioContainers addition for fadapa 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/fade shpc-registry automated BioContainers addition for fade fade
GITHUB quay.io/biocontainers/fairease-source singularity registry hpc automated addition for fairease-source create_probes_earth_map.py, csv2kml, data_information_calc.py, depth_aggregator.py, depth_calc.py, duplicated_records_remover.py, find_variable_name.py, insitu_evaluation.py, insitu_tac_platforms_finder.py, insitu_tac_pre_processing.py, insitu_tac_timeseries_extractor.py, kml2pykml, mean_variance_nc_variable.py, metadata_merger.py, model_datasets_concatenator.py, model_postpro.py, nc3tonc4, nc4tonc3, ncinfo, obs_postpro.py, pointwise_datasets_concatenator.py, ptmp_to_temp.py, quality_check_applier.py, real_time_concatenator.py, records_monotonicity_fixer.py, rejection_statistics.py, time_averager.py, time_calc.py, time_check.py, time_from_index.py, time_series_post_processing.py, unique_values_nc_variable.py, validate_kml, vertical_interpolation.py, h5delete, unidecode, tjbench, aec, f2py3.11, zipcmp, zipmerge, ziptool, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport
GITHUB quay.io/biocontainers/fairy singularity registry hpc automated addition for fairy fairy
GITHUB quay.io/biocontainers/falco shpc-registry automated BioContainers addition for falco falco, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/famsa shpc-registry automated BioContainers addition for famsa famsa
GITHUB quay.io/biocontainers/famseq shpc-registry automated BioContainers addition for famseq FamSeq
GITHUB quay.io/biocontainers/fanc shpc-registry automated BioContainers addition for fanc calc-prorate, cheroot, cherryd, convert-regions, fanc, fancplot, gridmap_web, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng
GITHUB quay.io/biocontainers/fann shpc-registry automated BioContainers addition for fann
GITHUB quay.io/biocontainers/faqcs shpc-registry automated BioContainers addition for faqcs FaQCs
GITHUB quay.io/biocontainers/fargene shpc-registry automated BioContainers addition for fargene ORFfinder, fargene, fargene_model_creation, pick_long_reads, trim_galore, clustalo, _aaindexextract, _abiview, _acdc, _acdpretty, _acdtable, _acdtrace, _acdvalid, _antigenic, _backtranambig
GITHUB quay.io/biocontainers/fast-edit-distance singularity registry hpc automated addition for fast-edit-distance 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config
GITHUB quay.io/biocontainers/fast5-research shpc-registry automated BioContainers addition for fast5-research extract_reads, conv-template, from-template, py.test, pytest, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m
GITHUB quay.io/biocontainers/fast5 shpc-registry automated BioContainers addition for fast5
GITHUB quay.io/biocontainers/fast5seek shpc-registry automated BioContainers addition for fast5seek fast5_subset, fast5seek, multi_to_single_fast5, single_to_multi_fast5, f2py3.6, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, 2to3-3.6, idle3.6
GITHUB quay.io/biocontainers/fasta-splitter shpc-registry automated BioContainers addition for fasta-splitter fasta-splitter, perl5.26.2, podselect
GITHUB quay.io/biocontainers/fasta3 shpc-registry automated BioContainers addition for fasta3 ann_exons_all.pl, ann_exons_ens.pl, ann_exons_ncbi.pl, ann_exons_up_sql.pl, ann_exons_up_sql_www.pl, ann_exons_up_www.pl, ann_feats2ipr.pl, ann_feats2ipr_e.pl, ann_feats_up_sql.pl, ann_feats_up_www2.pl, ann_ipr_www.pl, ann_pdb_cath.pl, ann_pdb_vast.pl, ann_pfam30_tmptbl.pl, ann_pfam_sql.pl, ann_pfam_www.pl, ann_upfeats_pfam_www_e.pl, annot_blast_btop2.pl, color_defs.pl, exp_up_ensg.pl, expand_links.pl, expand_refseq_isoforms.pl, expand_uniref50.pl, expand_up_isoforms.pl, fasta36, fastf36, fastm36, fasts36, fastx36, fasty36, ggsearch36, glsearch36, lalign36, lav2plt.pl, lavplt_ps.pl, lavplt_svg.pl, links2sql.pl, m8_btop_msa.pl, m9B_btop_msa.pl, map_db, merge_blast_btab.pl, merge_fasta_btab.pl, parse_m9.pl, res2R.pl, shuffle_embed.pl, ssearch36, summ_domain_ident.pl, tfastf36, tfastm36, tfasts36, tfastx36, tfasty36
GITHUB quay.io/biocontainers/fasta_ushuffle shpc-registry automated BioContainers addition for fasta_ushuffle fasta_ushuffle, ushuffle
GITHUB quay.io/biocontainers/fasta_windows shpc-registry automated BioContainers addition for fasta_windows fasta_windows
GITHUB quay.io/biocontainers/fastafunk shpc-registry automated BioContainers addition for fastafunk fastafunk, dendropy-format, sumlabels.py, sumtrees.py, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/fastagap singularity registry hpc automated addition for fastagap fastagap
GITHUB quay.io/biocontainers/fastahack shpc-registry automated BioContainers addition for fastahack fastahack
GITHUB quay.io/biocontainers/fastaindex shpc-registry automated BioContainers addition for fastaindex FastaIndex, fasta_stats, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/fastalite shpc-registry automated BioContainers addition for fastalite 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/fastani shpc-registry automated BioContainers addition for fastani fastANI
GITHUB quay.io/biocontainers/fastaptamer shpc-registry automated BioContainers addition for fastaptamer fastaptamer_cluster, fastaptamer_cluster_xs, fastaptamer_compare, fastaptamer_count, fastaptamer_enrich, fastaptamer_search, perl5.32.0, streamzip
GITHUB quay.io/biocontainers/fastdtw shpc-registry automated BioContainers addition for fastdtw 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/fasten shpc-registry automated BioContainers addition for fasten fasten_clean, fasten_combine, fasten_convert, fasten_kmer, fasten_metrics, fasten_mutate, fasten_pe, fasten_progress, fasten_quality_filter, fasten_randomize, fasten_regex, fasten_replace, fasten_sample, fasten_shuffle, fasten_sort, fasten_straighten, fasten_trim, fasten_validate
GITHUB quay.io/biocontainers/fastg2protlib shpc-registry automated BioContainers addition for fastg2protlib xslt-config, xsltproc, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc
GITHUB quay.io/biocontainers/fastga singularity registry hpc automated addition for fastga ALNchain, ALNplot, ALNreset, ALNshow, ALNtoPAF, ALNtoPSL, FAtoGDB, FastGA, GDBshow, GDBstat, GDBtoFA, GIXcp, GIXmake, GIXmv, GIXrm, GIXshow, ONEview, PAFtoALN, PAFtoPSL
GITHUB quay.io/biocontainers/fastindep shpc-registry automated BioContainers addition for fastindep fastindep, fastindep-symmetry
GITHUB quay.io/biocontainers/fastk singularity registry hpc automated addition for fastk FastK, Fastcp, Fastmerge, Fastmv, Fastrm, Haplex, Histex, Homex, Logex, Profex, Symmex, Tabex, Vennex
GITHUB quay.io/biocontainers/fastkit singularity registry hpc automated addition for fastkit fastkit, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/fastlin singularity registry hpc automated addition for fastlin fastlin
GITHUB quay.io/biocontainers/fastlmm shpc-registry automated BioContainers addition for fastlmm get_objgraph, undill, qhelpconverter, f2py2, f2py2.7, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc
GITHUB quay.io/biocontainers/fastme shpc-registry automated BioContainers addition for fastme fastme
GITHUB quay.io/biocontainers/fastml shpc-registry automated BioContainers addition for fastml FastML_Wrapper.pl, fastml, bp_pairwise_kaks.pl, bp_search2BSML.pl, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, bp_aacomp.pl, bp_biofetch_genbank_proxy.pl
GITHUB quay.io/biocontainers/fastmlst shpc-registry automated BioContainers addition for fastmlst fastmlst, test_pcre, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, seedtop, tqdm, run_with_lock, f2py3.8, blast_formatter
GITHUB quay.io/biocontainers/fastobo shpc-registry automated BioContainers addition for fastobo 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/fastool shpc-registry automated BioContainers addition for fastool fastool
GITHUB quay.io/biocontainers/fastools singularity registry hpc automated addition for fastools fastools, split_fasta, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1
GITHUB quay.io/biocontainers/fastp shpc-registry automated BioContainers addition for fastp fastp
GITHUB quay.io/biocontainers/fastpca shpc-registry automated BioContainers addition for fastpca fastpca
GITHUB quay.io/biocontainers/fastphylo shpc-registry automated BioContainers addition for fastphylo fastdist, fastprot, fastprot_mpi, fnj, aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info, opal_wrapper, orte-clean, orte-info, orte-server
GITHUB quay.io/biocontainers/fastplong singularity registry hpc automated addition for fastplong fastplong, igzip
GITHUB quay.io/biocontainers/fastq-and-furious shpc-registry automated BioContainers addition for fastq-and-furious 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/fastq-anonymous shpc-registry automated BioContainers addition for fastq-anonymous fastq-anonymous, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/fastq-count shpc-registry automated BioContainers addition for fastq-count fastq-count
GITHUB quay.io/biocontainers/fastq-dl shpc-registry automated BioContainers addition for fastq-dl abi-dump.2.11.0, abi-load, abi-load.2, abi-load.2.11.0, align-cache.2.11.0, align-info.2.11.0, bam-load.2.11.0, cache-mgr.2.11.0, ccextract, ccextract.2, ccextract.2.11.0, cg-load.2.11.0, executor, fasterq-dump-orig.2.11.0, fasterq-dump.2.11.0, fastq-dl, fastq-dump-orig.2.11.0, fastq-dump.2.11.0, fastq-load, fastq-load.2, fastq-load.2.11.0, helicos-load, helicos-load.2, helicos-load.2.11.0, illumina-dump.2.11.0, illumina-load, illumina-load.2, illumina-load.2.11.0, kar.2.11.0, kdbmeta.2.11.0, kget.2.11.0, latf-load.2.11.0, md5cp.2.11.0, pacbio-load, pacbio-load.2, pacbio-load.2.11.0, pacbio-loadxml, pacbio-loadxml.2, pacbio-loadxml.2.11.0, prefetch-orig.2.11.0, prefetch.2.11.0, rcexplain.2.11.0, read-filter-redact.2.11.0, sam-dump-orig.2.11.0, sam-dump.2.11.0, sff-dump.2.11.0, sff-load, sff-load.2, sff-load.2.11.0, sra-pileup-orig.2.11.0, sra-pileup.2.11.0, sra-sort-cg.2.11.0, sra-sort.2.11.0, sra-stat.2.11.0, srapath-orig.2.11.0, srapath.2.11.0, sratools.2.11.0, srf-load, srf-load.2, srf-load.2.11.0, test-sra.2.11.0, vdb-config.2.11.0, vdb-copy.2.11.0, vdb-decrypt.2.11.0, vdb-diff.2.11.0, vdb-dump-orig.2.11.0, vdb-dump.2.11.0, vdb-encrypt.2.11.0, vdb-lock.2.11.0, vdb-passwd.2.11.0, vdb-unlock.2.11.0, vdb-validate.2.11.0, align-cache.2, md5cp.2, read-filter-redact.2, sra-sort-cg.2, vdb-diff.2, align-cache, fasterq-dump-orig, fastq-dump-orig, md5cp, prefetch-orig
GITHUB quay.io/biocontainers/fastq-filter singularity registry hpc automated addition for fastq-filter fastq-filter, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/fastq-join shpc-registry automated BioContainers addition for fastq-join fastq-join
GITHUB quay.io/biocontainers/fastq-multx shpc-registry automated BioContainers addition for fastq-multx fastq-multx
GITHUB quay.io/biocontainers/fastq-pair shpc-registry automated BioContainers addition for fastq-pair fastq_pair
GITHUB quay.io/biocontainers/fastq-scan shpc-registry automated BioContainers addition for fastq-scan fastq-scan, jq, onig-config
GITHUB quay.io/biocontainers/fastq-screen shpc-registry automated BioContainers addition for fastq-screen bdf2gdfont.PLS, cvtbdf.pl, fastq_screen, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect, gdlib-config
GITHUB quay.io/biocontainers/fastq-tools shpc-registry automated BioContainers addition for fastq-tools fastq-grep, fastq-kmers, fastq-match, fastq-qscale, fastq-qual, fastq-qualadj, fastq-sample, fastq-sort, fastq-uniq
GITHUB quay.io/biocontainers/fastq_utils shpc-registry automated BioContainers addition for fastq_utils bam2fastq, bam_add_tags, bam_annotate.sh, bam_umi_count, fastq2bam, fastq_filter_n, fastq_filterpair, fastq_info, fastq_not_empty, fastq_num_reads, fastq_pre_barcodes, fastq_split_interleaved, fastq_tests, fastq_trim_poly_at, fastq_truncate, fastq_validator.sh, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa
GITHUB quay.io/biocontainers/fastqc-rs shpc-registry automated BioContainers addition for fastqc-rs fqc
GITHUB quay.io/biocontainers/fastqc shpc-registry automated BioContainers addition for fastqc fastqc
GITHUB quay.io/biocontainers/fastqe shpc-registry automated BioContainers addition for fastqe fastqe, pyemojify, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/fastqmetrics shpc-registry automated BioContainers addition for fastqmetrics fastqmetrics, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv
GITHUB quay.io/biocontainers/fastqpuri shpc-registry automated BioContainers addition for fastqpuri Qreport, Sreport, makeBloom, makeTree, trimFilter, trimFilterPE, pandoc
GITHUB quay.io/biocontainers/fastqsplitter shpc-registry automated BioContainers addition for fastqsplitter fastqsplitter, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, 2to3-3.8, idle3.8, pydoc3.8, python3.8
GITHUB quay.io/biocontainers/fastqtk singularity registry hpc automated addition for fastqtk fastqtk
GITHUB quay.io/biocontainers/fastremap-bio singularity registry hpc automated addition for fastremap-bio FastRemap
GITHUB quay.io/biocontainers/fastsimbac shpc-registry automated BioContainers addition for fastsimbac fastSimBac, msformatter, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/fastspar shpc-registry automated BioContainers addition for fastspar fastspar, fastspar_bootstrap, fastspar_pvalues, fastspar_reduce
GITHUB quay.io/biocontainers/faststructure shpc-registry automated BioContainers addition for faststructure chooseK.py, distruct.py, structure.py, qhelpconverter, f2py2, f2py2.7, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner, repc
GITHUB quay.io/biocontainers/fasttree shpc-registry automated BioContainers addition for fasttree FastTree, FastTree.c, FastTreeMP, fasttree
GITHUB quay.io/biocontainers/fastuniq shpc-registry automated BioContainers addition for fastuniq fastuniq
GITHUB quay.io/biocontainers/fastutils shpc-registry automated BioContainers addition for fastutils fastutils
GITHUB quay.io/biocontainers/fastv shpc-registry automated BioContainers addition for fastv fastv
GITHUB quay.io/biocontainers/fastx_toolkit shpc-registry automated BioContainers addition for fastx_toolkit
GITHUB quay.io/biocontainers/fates-emerald shpc-registry automated BioContainers addition for fates-emerald
GITHUB quay.io/biocontainers/favites_lite singularity registry hpc automated addition for favites_lite GEMF, GEMF_FAVITES.py, coatran_constant, coatran_expgrowth, coatran_inftime, coatran_transtree, favites_lite.py, ngg_barabasi_albert, ngg_barbell, ngg_complete, ngg_cycle, ngg_empty, ngg_erdos_renyi, ngg_newman_watts_strogatz, ngg_path, ngg_ring_lattice, seq-gen, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config
GITHUB quay.io/biocontainers/fba shpc-registry automated BioContainers addition for fba fba, umi_tools, igzip, pbunzip2, pbzcat, pbzip2, numba, pycc, pigz, unpigz, fonttools, pyftmerge
GITHUB quay.io/biocontainers/fcp shpc-registry automated BioContainers addition for fcp AddModel.py, BLASTN.py, BuildBlastDB.py, Epsilon-NB.py, FCP_install.py, LCA+Epsilon-NB.py, LCA.py, NB-BL.py, TaxonomicSummary.py, aalookup_unit_test, aascan_unit_test, align_format_unit_test, bdbloader_unit_test, bl2seq_unit_test, blast_format_unit_test, blast_services_unit_test, blast_unit_test, blastdb_format_unit_test, blastdiag_unit_test, blastengine_unit_test, blastextend_unit_test, blastfilter_unit_test, blasthits_unit_test, blastinput_unit_test, blastoptions_unit_test, blastsetup_unit_test, delta_unit_test, gapinfo_unit_test, gencode_singleton_unit_test, gene_info_unit_test, hspfilter_besthit_unit_test, hspfilter_culling_unit_test, hspstream_unit_test, linkhsp_unit_test, magicblast_unit_test, msa2pssm_unit_test, nb-classify, nb-train, ntlookup_unit_test, ntscan_unit_test, optionshandle_unit_test, phiblast_unit_test, prelimsearch_unit_test, psibl2seq_unit_test, psiblast_iteration_unit_test, psiblast_unit_test, pssmcreate_unit_test, pssmenginefreqratios_unit_test, querydata_unit_test, queryinfo_unit_test, redoalignment_unit_test, remote_blast_unit_test, rps_unit_test, scoreblk_unit_test, search_strategy_unit_test, seqdb_unit_test, seqinfosrc_unit_test, seqsrc_unit_test, setupfactory_unit_test, split_query_unit_test, stat_unit_test, subj_ranges_unit_test, traceback_unit_test, tracebacksearch_unit_test, uniform_search_unit_test, version_reference_unit_test, writedb_unit_test, test_pcre, easy_install-2.7, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, seedtop, uconv, run_with_lock, blast_formatter
GITHUB quay.io/biocontainers/fcsparser shpc-registry automated BioContainers addition for fcsparser f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/feature_merge shpc-registry automated BioContainers addition for feature_merge feature_merge, pbr, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, faidx, 2to3-3.9, idle3.9, pydoc3.9
GITHUB quay.io/biocontainers/fec singularity registry hpc automated addition for fec Fec, parse_sam.py, sdust, paftools.js, minimap2, k8, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/feelnc shpc-registry automated BioContainers addition for feelnc FEELnc_classifier.pl, FEELnc_classifier.pl.bak, FEELnc_codpot.pl, FEELnc_codpot.pl.bak, FEELnc_filter.pl, FEELnc_filter.pl.bak, FEELnc_pipeline.sh, FEELnc_tpLevel2gnLevelClassification.R, FEELnc_tpLevel2gnLevelClassification.R.bak, KmerInShort, fasta_ushuffle, ushuffle, gdlib-config, bam2bedgraph, bp_find-blast-matches.pl, ace.pl, ccconfig, SOAPsh.pl, map, mirrorMappings, mkCSGB2312, mkmapfile
GITHUB quay.io/biocontainers/feems singularity registry hpc automated addition for feems demes, epsg_tr.py, esri2wkt.py, fio, gcps2vec.py, gcps2wld.py, gdal2tiles.py, gdal2xyz.py, gdal_auth.py, gdal_calc.py, gdal_edit.py, gdal_fillnodata.py, gdal_merge.py, gdal_pansharpen.py, gdal_polygonize.py, gdal_proximity.py, gdal_retile.py, gdal_sieve.py, gdalchksum.py, gdalcompare.py, gdalident.py, gdalimport.py, gdalmove.py, mkgraticule.py, msp, mspms, ogrmerge.py, pct2rgb.py, pyproj, rgb2pct.py, tskit, testepsg, pg_standby, gdal_create, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, dap-config, dap-config-pkgconfig, gdal-config, gdal_contour, gdal_grid, gdal_rasterize, gdal_translate, gdaladdo
GITHUB quay.io/biocontainers/fegenie shpc-registry automated BioContainers addition for fegenie FeGenie.py, aggregateBinDepths.pl, aggregateContigOverlapsByBin.pl, contigOverlaps, jgi_summarize_bam_contig_depths, merge_depths.pl, metabat, metabat1, metabat2, runMetaBat.sh, pandoc-server, diamond, prodigal, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns
GITHUB quay.io/biocontainers/feht shpc-registry automated BioContainers addition for feht feht
GITHUB quay.io/biocontainers/fermi-lite shpc-registry automated BioContainers addition for fermi-lite fml-asm
GITHUB quay.io/biocontainers/fermi shpc-registry automated BioContainers addition for fermi
GITHUB quay.io/biocontainers/ffgc singularity registry hpc automated addition for ffgc ffgc_create_project.py, markdown-it, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray, mcxassemble, mcxdeblast, mcxdump, mcxi, mcxload, mcxmap, mcxrand, mcxsubs, stone, yte, plac_runner.py, docutils, f2py3.11, pulptest, grpc_cpp_plugin
GITHUB quay.io/biocontainers/ffindex-dbkit shpc-registry automated BioContainers addition for ffindex-dbkit dbkit_create.py, dbkit_extract.py, dbkit_merge.py, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/ffindex shpc-registry automated BioContainers addition for ffindex
GITHUB quay.io/biocontainers/ffq shpc-registry automated BioContainers addition for ffq ffq, xml2-config.bak, normalizer, xslt-config, xsltproc, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/fftw shpc-registry automated BioContainers addition for fftw fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom
GITHUB quay.io/biocontainers/fgap shpc-registry automated BioContainers addition for fgap FGAP, fgap.m, mkoctfile, mkoctfile-4.2.1, octave, octave-4.2.1, octave-cli, octave-cli-4.2.1, octave-config, octave-config-4.2.1, sndfile-regtest, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set
GITHUB quay.io/biocontainers/fgbio-minimal singularity registry hpc automated addition for fgbio-minimal fgbio, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd
GITHUB quay.io/biocontainers/fgbio shpc-registry automated BioContainers addition for fgbio fgbio, cups-config, ippeveprinter, ipptool, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink
GITHUB quay.io/biocontainers/fgmp shpc-registry automated BioContainers addition for fgmp PF00225_full.blocks.txt, PF00225_seed.blocks.txt, SplicedAlignment.pm, aa2nonred.pl, add_name_to_gff3.pl, aln2wig, augustify.py, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, bam2wig, bamToWig.py, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, cdbfasta, cdbyank, cegma2gff.pl, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, compare_masking.pl, compileSpliceCands, computeFlankingRegion.pl, createAugustusJoblist.pl, del_from_prfl.pl, esd2esi, evalCGP.pl, eval_dualdecomp.pl, eval_multi_gtf.pl, executeTestCGP.py, exonerate, exonerate-server, exonerate2hints.pl, exoniphyDb2hints.pl, extractAnno.py, extractTranscriptEnds.pl, fasta2esd, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds, fgmp, filter-ppx.pl, filterGenes.pl, filterGenesIn.pl, filterGenesIn_mRNAname.pl, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, findGffNamesInFasta.pl, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, getAnnoFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, getSeq, get_loci_from_gb.pl, gff2gbSmallDNA.pl, gff2ps_mycustom, gffGetmRNA.pl, gp2othergp.pl, gtf2aa.pl, gtf2gff.pl, gth2gtf.pl, hal2maf_split.pl, helpMod.pm, ipcress, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, load2sqlitedb, lp_solve, maf2conswig.pl, makeMatchLists.pl, makeUtrTrainingSet.pl, maskNregions.pl, merge_masking.pl, moveParameters.pl, msa2prfl.pl, new_species.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, peptides2alternatives.pl, peptides2hints.pl, phastconsDB2hints.pl, polyA2hints.pl, pp_simScore, prints2prfl.pl, pslMap.pl, randomSplit.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, samMap.pl, scipiogff2gff.pl, setStopCodonFreqs.pl, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, splitMfasta.pl, split_wiggle.pl, summarizeACGTcontent.pl, transMap2hints.pl, uniquePeptides.pl, utrgff2gbrowse.pl, utrrnaseq, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, yaml2gff.1.4.pl, augustus, bam2hints, etraining, fastBlockSearch, filterBam, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign, _aaindexextract
GITHUB quay.io/biocontainers/fgpyo singularity registry hpc automated addition for fgpyo 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/fgsv singularity registry hpc automated addition for fgsv fgsv, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap, jps
GITHUB quay.io/biocontainers/fgwas shpc-registry automated BioContainers addition for fgwas fgwas, test
GITHUB quay.io/biocontainers/fibertools-rs singularity registry hpc automated addition for fibertools-rs ft
GITHUB quay.io/biocontainers/ficus shpc-registry automated BioContainers addition for ficus f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc, tificc
GITHUB quay.io/biocontainers/fido shpc-registry automated BioContainers addition for fido Fido, FidoChooseParameters
GITHUB quay.io/biocontainers/figaro shpc-registry automated BioContainers addition for figaro figaro.py, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc
GITHUB quay.io/biocontainers/figtree shpc-registry automated BioContainers addition for figtree figtree, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/fiji-max_inscribed_circles singularity registry hpc automated addition for fiji-max_inscribed_circles ImageJ, ImageJ_bin, bunwarpj, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap, jps
GITHUB quay.io/biocontainers/fiji-morpholibj singularity registry hpc automated addition for fiji-morpholibj ImageJ, bunwarpj, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs, pack200, rmic, rmid, unpack200, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo
GITHUB quay.io/biocontainers/fiji-omero_ij singularity registry hpc automated addition for fiji-omero_ij ImageJ, ImageJ_bin, bunwarpj, tjbench, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap
GITHUB quay.io/biocontainers/fiji-simple_omero_client singularity registry hpc automated addition for fiji-simple_omero_client ImageJ, ImageJ_bin, bunwarpj, tjbench, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap
GITHUB quay.io/biocontainers/filechunkio shpc-registry automated BioContainers addition for filechunkio easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5
GITHUB quay.io/biocontainers/filesendercli singularity registry hpc automated addition for filesendercli filesender, idle3.13, pydoc3.13, python3.13, python3.13-config, normalizer
GITHUB quay.io/biocontainers/filtlong shpc-registry automated BioContainers addition for filtlong filtlong
GITHUB quay.io/biocontainers/find_circ singularity registry hpc automated addition for find_circ cmp_bed.py, find_circ.py, maxlength.py, merge_bed.py, unmapped2anchors.py, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py
GITHUB quay.io/biocontainers/find_differential_primers shpc-registry automated BioContainers addition for find_differential_primers _gdlib-config, find_differential_primers.py, long_seq_tm_test, ntdpal, oligotm, perl5.30.3, primer3_core, _bdftogd, _gd2copypal, _gd2togif, _gd2topng, _gdcmpgif, _gdparttopng, _gdtopng, _giftogd2, _pngtogd, _pngtogd2
GITHUB quay.io/biocontainers/finemap singularity registry hpc automated addition for finemap finemap
GITHUB quay.io/biocontainers/fineradstructure shpc-registry automated BioContainers addition for fineradstructure RADpainter, finestructure
GITHUB quay.io/biocontainers/finestructure shpc-registry automated BioContainers addition for finestructure beagle2chromopainter.pl, chromopainter2chromopainterv2.pl, convertrecfile.pl, fs, impute2chromopainter.pl, makeuniformrecfile.pl, msms2cp.pl, phasescreen.pl, phasesubsample.pl, plink2chromopainter.pl, perl5.32.1, streamzip
GITHUB quay.io/biocontainers/fingerprintscan shpc-registry automated BioContainers addition for fingerprintscan fingerPRINTScan
GITHUB quay.io/biocontainers/fings shpc-registry automated BioContainers addition for fings fings, vcf_sample_filter.py, vcf_filter.py, vcf_melt, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9
GITHUB quay.io/biocontainers/fiona shpc-registry automated BioContainers addition for fiona epsg_tr.py, esri2wkt.py, fio, gcps2vec.py, gcps2wld.py, gdal2tiles.py, gdal2xyz.py, gdal_auth.py, gdal_calc.py, gdal_edit.py, gdal_fillnodata.py, gdal_merge.py, gdal_pansharpen.py, gdal_polygonize.py, gdal_proximity.py, gdal_retile.py, gdal_sieve.py, gdalchksum.py, gdalcompare.py, gdalident.py, gdalimport.py, gdalmove.py, gdalserver, mkgraticule.py, ogrmerge.py, pct2rgb.py, rgb2pct.py, testepsg, pg_standby, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums
GITHUB quay.io/biocontainers/firecloud shpc-registry automated BioContainers addition for firecloud bq, docker-credential-gcloud, fissfc, gcloud, gsutil, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, chardetect, 2to3-3.9, idle3.9
GITHUB quay.io/biocontainers/fisher shpc-registry automated BioContainers addition for fisher python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/fishtaco shpc-registry automated BioContainers addition for fishtaco run_fishtaco.py, run_musicc.py, test_fishtaco.py, test_musicc.py, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5, wish8.5
GITHUB quay.io/biocontainers/fit_nbinom shpc-registry automated BioContainers addition for fit_nbinom f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/fithic shpc-registry automated BioContainers addition for fithic fithic, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, opj_compress
GITHUB quay.io/biocontainers/fitter shpc-registry automated BioContainers addition for fitter fitter, browse, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp
GITHUB quay.io/biocontainers/flaimapper shpc-registry automated BioContainers addition for flaimapper flaimapper, sslm2sam, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/flair shpc-registry automated BioContainers addition for flair bam2Bed12, bed_to_psl, deFLAIR, diff_iso_usage, diffsplice_fishers_exact, flair, junctions_from_sam, mark_intron_retention, mark_productivity, normalize_counts_matrix, plot_isoform_usage, predictProductivity, psl_to_bed, psl_to_sequence, sam_to_map, minimap2.py, sdust, paftools.js, minimap2, k8, fonttools, pyftmerge, pyftsubset, ttx, tqdm
GITHUB quay.io/biocontainers/flams singularity registry hpc automated addition for flams FLAMS, test_pcre, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs
GITHUB quay.io/biocontainers/flanker shpc-registry automated BioContainers addition for flanker abricate, abricate-get_db, flanker, any2fasta, funzip, unzipsfx, zipgrep, zipinfo, unzip, capnp, capnpc, capnpc-c++, capnpc-capnp
GITHUB quay.io/biocontainers/flapjack shpc-registry automated BioContainers addition for flapjack flapjack, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/flash shpc-registry automated BioContainers addition for flash
GITHUB quay.io/biocontainers/flash2 shpc-registry automated BioContainers addition for flash2 flash2
GITHUB quay.io/biocontainers/flashlfq shpc-registry automated BioContainers addition for flashlfq FlashLFQ, lttng-gen-tp
GITHUB quay.io/biocontainers/flask-admin shpc-registry automated BioContainers addition for flask-admin flask, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6
GITHUB quay.io/biocontainers/flask-basicauth shpc-registry automated BioContainers addition for flask-basicauth flask, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6
GITHUB quay.io/biocontainers/flask-bootstrap shpc-registry automated BioContainers addition for flask-bootstrap flask, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6
GITHUB quay.io/biocontainers/flask-bower shpc-registry automated BioContainers addition for flask-bower flask, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/flask-markdown shpc-registry automated BioContainers addition for flask-markdown flask, easy_install-3.5, markdown_py, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config
GITHUB quay.io/biocontainers/flask-nav shpc-registry automated BioContainers addition for flask-nav flask, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6
GITHUB quay.io/biocontainers/flask-potion shpc-registry automated BioContainers addition for flask-potion flask, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5
GITHUB quay.io/biocontainers/flask-script shpc-registry automated BioContainers addition for flask-script flask, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5
GITHUB quay.io/biocontainers/flask-sqlalchemy shpc-registry automated BioContainers addition for flask-sqlalchemy flask, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5
GITHUB quay.io/biocontainers/flexbar shpc-registry automated BioContainers addition for flexbar flexbar
GITHUB quay.io/biocontainers/flexi-formatter singularity registry hpc automated addition for flexi-formatter flexi_formatter, pileup.py, typer, annot-tsv, markdown-it, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, pygmentize, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl
GITHUB quay.io/biocontainers/flexiformatter singularity registry hpc automated addition for flexiformatter flexiformatter, idle3.13, pileup.py, pydoc3.13, python3.13, python3.13-config, typer, annot-tsv, markdown-it, pygmentize, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim, wgsim_eval.pl, samtools
GITHUB quay.io/biocontainers/flexiplex singularity registry hpc automated addition for flexiplex flexiplex, flexiplex-filter, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc, transicc
GITHUB quay.io/biocontainers/flexserv singularity registry hpc automated addition for flexserv bd, diaghess, dmdgoopt, lorellnma, mc-eigen-mdweb.pl, mc-eigen.pl, nmanu.pl, pca_anim_mc.pl
GITHUB quay.io/biocontainers/flexsweep singularity registry hpc automated addition for flexsweep checksum-profile, demes, elastishadow, flexsweep, protoc-27.5.0, torch_shm_manager, flatc, nosetests-3.9, dask, import_pb_to_tensorboard, isympy, nosetests, torchrun, dask-scheduler, dask-ssh, dask-worker, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, estimator_ckpt_converter, convert-caffe2-to-onnx, convert-onnx-to-caffe2, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, h5tools_test_utils
GITHUB quay.io/biocontainers/flextaxd shpc-registry automated BioContainers addition for flextaxd flextaxd, flextaxd-create, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/flexynesis singularity registry hpc automated addition for flexynesis ase, ase-build, ase-db, ase-gui, ase-info, ase-run, community, debugpy, fabric, flexynesis, flexynesis-cli, lightning, papermill, pyaml, rav1e, torch_shm_manager, SvtAv1EncApp, dav1d, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, tiff2fsspec, aomdec, aomenc, protoc-25.3.0, tiffcomment, jupyter-execute, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, imageio_download_bin
GITHUB quay.io/biocontainers/flight-genome shpc-registry automated BioContainers addition for flight-genome flight, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/flippyr shpc-registry automated BioContainers addition for flippyr flippyr, faidx, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/flock shpc-registry automated BioContainers addition for flock cent_adjust, flock1, flock2
GITHUB quay.io/biocontainers/floria singularity registry hpc automated addition for floria floria, vartig-dump
GITHUB quay.io/biocontainers/flowcraft shpc-registry automated BioContainers addition for flowcraft flowcraft, nextflow, nextflow.bak, giffilter, gifsponge, gifecho, gifinto, basenc, b2sum, base32, base64, basename, cat
GITHUB quay.io/biocontainers/flumut singularity registry hpc automated addition for flumut flumut, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config
GITHUB quay.io/biocontainers/flumutdb singularity registry hpc automated addition for flumutdb 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config
GITHUB quay.io/biocontainers/flux-simulator shpc-registry automated BioContainers addition for flux-simulator flux-simulator, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/flye shpc-registry automated BioContainers addition for flye flye, flye-minimap2, flye-modules, flye-samtools, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/fmlrc shpc-registry automated BioContainers addition for fmlrc
GITHUB quay.io/biocontainers/fmlrc2 shpc-registry automated BioContainers addition for fmlrc2 fmlrc2, fmlrc2-convert, starcode
GITHUB quay.io/biocontainers/fmsi singularity registry hpc automated addition for fmsi fmsi
GITHUB quay.io/biocontainers/focus shpc-registry automated BioContainers addition for focus focus, focus_database_utils, funzip, unzipsfx, zipgrep, zipinfo, unzip, jellyfish, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10
GITHUB quay.io/biocontainers/foldcomp singularity registry hpc automated addition for foldcomp foldcomp
GITHUB quay.io/biocontainers/foldmason singularity registry hpc automated addition for foldmason foldmason, aria2c, gawk-5.3.0, gawkbug, awk, gawk, idn2, wget
GITHUB quay.io/biocontainers/foldseek shpc-registry automated BioContainers addition for foldseek aria2c, foldseek, gawk-5.1.0, awk, gawk, idn2, wget, perl5.32.1, streamzip
GITHUB quay.io/biocontainers/footprint shpc-registry automated BioContainers addition for footprint find_footprints.sh, gawk-5.1.0, awk, gawk, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam
GITHUB quay.io/biocontainers/forceatlas2-python shpc-registry automated BioContainers addition for forceatlas2-python appletviewer, idlj, orbd, schemagen, servertool, tnameserv, wsgen, wsimport, xjc, jaotc
GITHUB quay.io/biocontainers/forgi shpc-registry automated BioContainers addition for forgi compare_RNA.py, describe_cg.py, forgi_config.py, pseudoknot_analyzer.py, rnaConvert.py, visualize_rna.py, f2py3.6, futurize, pasteurize, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config
GITHUB quay.io/biocontainers/forked-path shpc-registry automated BioContainers addition for forked-path python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config
GITHUB quay.io/biocontainers/forwardgenomics singularity registry hpc automated addition for forwardgenomics all_dists, base_evolve, chooseLines, clean_genes, consEntropy, convert_coords, display_rate_matrix, dless, dlessP, draw_tree, eval_predictions, exoniphy, f2py3.11, forwardGenomics.R, forwardGenomics_fullAnalysis.R, forwardGenomics_globalAnalysis.R, forwardGenomics_initialization.R, forwardGenomics_localAnalysis.R, hmm_train, hmm_tweak, hmm_view, indelFit, indelHistory, maf_parse, makeHKY, modFreqs, msa_diff, msa_split, msa_view, pbsDecode, pbsEncode, pbsScoreMatrix, pbsTrain, phast, phastBias, phastCons, phastMotif, phastOdds, phyloBoot, phyloFit, phyloP, prequel, refeature, stringiphy, treeGen, tree_doctor, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, glpsol, python3.1, perl5.32.1, streamzip
GITHUB quay.io/biocontainers/fpa shpc-registry automated BioContainers addition for fpa fpa
GITHUB quay.io/biocontainers/fpocket shpc-registry automated BioContainers addition for fpocket dpocket, fpocket, mdpocket, tpocket, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif
GITHUB quay.io/biocontainers/fq shpc-registry automated BioContainers addition for fq fq
GITHUB quay.io/biocontainers/fqgrep singularity registry hpc automated addition for fqgrep fqgrep
GITHUB quay.io/biocontainers/fqtk singularity registry hpc automated addition for fqtk fqtk
GITHUB quay.io/biocontainers/fqtools shpc-registry automated BioContainers addition for fqtools fqtools, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/fqtrim shpc-registry automated BioContainers addition for fqtrim fqtrim, gtest, threads
GITHUB quay.io/biocontainers/fqzcomp shpc-registry automated BioContainers addition for fqzcomp fqz_comp
GITHUB quay.io/biocontainers/frag_gene_scan_rs singularity registry hpc automated addition for frag_gene_scan_rs FragGeneScanRs
GITHUB quay.io/biocontainers/fragbuilder shpc-registry automated BioContainers addition for fragbuilder babel, obchiral, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop
GITHUB quay.io/biocontainers/fraggenescan shpc-registry automated BioContainers addition for fraggenescan FragGeneScan, run_FragGeneScan.pl, perl5.32.1, streamzip
GITHUB quay.io/biocontainers/fragpipe singularity registry hpc automated addition for fragpipe csc-dim, fragpipe, ionquant, monograph, msfragger, nunit-console, nunit-console2, nunit-console4, philosopher, csc, csi, illinkanalyzer, vbc, mono-package-runtime, sgen-grep-binprot, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr, chktrust, crlupdate, csharp, dmcs, dtd2rng, dtd2xsd, gacutil, gacutil2, genxs, httpcfg, ikdasm
GITHUB quay.io/biocontainers/fraposa-pgsc singularity registry hpc automated addition for fraposa-pgsc fraposa, fraposa_plot, fraposa_pred, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc
GITHUB quay.io/biocontainers/frc shpc-registry automated BioContainers addition for frc FRC, bamtools-2.4.0, bamtools, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6
GITHUB quay.io/biocontainers/fred2 shpc-registry automated BioContainers addition for fred2
GITHUB quay.io/biocontainers/freddie singularity registry hpc automated addition for freddie Annotation_Load.py, deBGA, deSALT, freddie_cluster.py, freddie_isoforms.py, freddie_segment.py, freddie_split.py, sdust, paftools.js, minimap2, k8, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/freebayes shpc-registry automated BioContainers addition for freebayes freebayes, freebayes-parallel, generate_freebayes_region_scripts.sh, bamleftalign, coverage_to_regions.py, fasta_generate_regions.py, vcffirstheader, vcfstreamsort, vcfuniq, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh
GITHUB quay.io/biocontainers/freyja shpc-registry automated BioContainers addition for freyja faToVcf, fido2-assert, fido2-cred, fido2-token, freyja, ivar, matOptimize, matUtils, ripples, scp, sftp, ssh, ssh-add, ssh-agent, ssh-keygen, ssh-keyscan, sshd, usher, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun
GITHUB quay.io/biocontainers/frogs shpc-registry automated BioContainers addition for frogs AbundanceStats, AlignmentTools, Clustering, FrameBot, KmerFilter, ProbeMatch, ReadSeq, SeqFilters, SequenceMatch, affiliation_OTU.py, affiliation_OTU_tpl.html, affiliation_filters.py, affiliation_filters_tpl.html, affiliation_postprocess.py, affiliations_stat.py, affiliations_stat_tpl.html, biom_to_stdBiom.py, biom_to_tsv.py, classifier, classifier.jar, clustering.py, clusters_stat.py, clusters_stat_tpl.html, demultiplex.py, deseq2_preprocess.py, deseq2_visualisation.Rmd, deseq2_visualisation.py, frogsfunc_copynumbers.py, frogsfunc_copynumbers_tpl.html, frogsfunc_functions.py, frogsfunc_functions_tpl.html, frogsfunc_pathways.py, frogsfunc_pathways_tpl.html, frogsfunc_placeseqs.py, frogsfunc_placeseqs_tpl.html, hmmgs, itsx.py, itsx_tpl.html, normalisation.py, normalisation_tpl.html, otu_filters.py, otu_filters_tpl.html, phyloseq_alpha_diversity.Rmd, phyloseq_alpha_diversity.py, phyloseq_beta_diversity.Rmd, phyloseq_beta_diversity.py, phyloseq_clustering.Rmd, phyloseq_clustering.py, phyloseq_composition.Rmd, phyloseq_composition.py, phyloseq_import_data.Rmd, phyloseq_import_data.py, phyloseq_manova.Rmd, phyloseq_manova.py, phyloseq_structure.Rmd, phyloseq_structure.py, preprocess.py, preprocess_tpl.html, remove_chimera.py, remove_chimera_tpl.html, tree.py, tree_tpl.html, tsv_to_biom.py, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer
GITHUB quay.io/biocontainers/fsa shpc-registry automated BioContainers addition for fsa fsa, gapcleaner, isect_mercator_alignment_gff, map_coords, map_gff_coords, percentid, prot2codon, slice_fasta, slice_fasta_gff, slice_mercator_alignment, translate
GITHUB quay.io/biocontainers/fseq shpc-registry automated BioContainers addition for fseq fseq, mapviewToBed.pl, perl5.22.0, c2ph, pstruct, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool
GITHUB quay.io/biocontainers/fsm-lite shpc-registry automated BioContainers addition for fsm-lite fsm-lite
GITHUB quay.io/biocontainers/fsnviz shpc-registry automated BioContainers addition for fsnviz crimson, fsnviz, circos, circos.exe, compile.bat, compile.make, gddiag, list.modules, test.modules, bdf2gdfont.pl, bdftogd, gd2copypal
GITHUB quay.io/biocontainers/ftputil shpc-registry automated BioContainers addition for ftputil easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5
GITHUB quay.io/biocontainers/fuc shpc-registry automated BioContainers addition for fuc fuc, tabulate, natsort, xslt-config, xsltproc, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9
GITHUB quay.io/biocontainers/fuma shpc-registry automated BioContainers addition for fuma chimerascan-exclude-transcriptome-events, chimerascan-relative-bedpe-to-CG, defuse-clusters-to-CG, fuma, fuma-gencode-gtf-to-bed, fuma-list-to-boolean-list, fusioncatcher-to-CG, htseq-count-barcodes, htseq-count, htseq-qa, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9
GITHUB quay.io/biocontainers/funannotate shpc-registry automated BioContainers addition for funannotate CodingQuarry, CufflinksGTF_to_CodingQuarryGFF3.py, EukHighConfidenceFilter, PtR, SplicedAlignment.pm, TransDecoder.LongOrfs, TransDecoder.Predict, Trinity, TrinityStats.pl, Trinity_gene_splice_modeler.py, aa2nonred.pl, abundance_estimates_to_matrix.pl, align_and_estimate_abundance.pl, analyze_blastPlus_topHit_coverage.pl, analyze_diff_expr.pl, ann_exons_ens.pl, ann_exons_ncbi.pl, ann_exons_up_sql.pl, ann_exons_up_www.pl, ann_feats2ipr.pl, ann_feats2ipr_e.pl, ann_feats_up_sql.pl, ann_feats_up_www2.pl, ann_ipr_www.pl, ann_pdb_cath.pl, ann_pdb_vast.pl, ann_pfam27.pl, ann_pfam28.pl, ann_pfam30.pl, ann_pfam30_tmptbl.pl, ann_pfam_www.pl, ann_upfeats_pfam_www_e.pl, annot_blast_btop2.pl, atoiindex, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, autoRun.pathInfo, bam2wig, bamToWig.py, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, cdbfasta, cdbyank, cdna_alignment_orf_to_genome_orf.pl, cds-trainer.pl, cegma2gff.pl, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, cmetindex, color_defs.pl, compare_gos.py, compare_masking.pl, compileSpliceCands, computeFlankingRegion.pl, compute_base_probs.pl, contig_ExN50_statistic.pl, covels-SE, coves-SE, cpuid, createAugustusJoblist.pl, dbsnp_iit, define_clusters_by_cutting_tree.pl, del_from_prfl.pl, distro, ensembl_genes, esd2esi, espoca, eufindtRNA, evalCGP.pl, eval_dualdecomp.pl, eval_multi_gtf.pl, evidence_modeler.pl, exclude_similar_proteins.pl, exonerate, exonerate-server, exonerate2hints.pl, exoniphyDb2hints.pl, exonpairs, exp_up_ensg.pl, expand_links.pl, expand_uniref50.pl, extractTranscriptEnds.pl, extract_exons.py, extract_splice_sites.py, extract_supertranscript_from_reference.py, fa_coords, fasta, fasta2esd, fasta2gsi, fasta36, fasta_prot_checker.pl, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds, fastf36, fastm36, fasts36, fastx36, fasty36, fathom, fetch_associations.py, ffindex_resume.pl, filter-ppx.pl, filterGenes.pl, filterGenesIn.pl, filterGenesIn_mRNAname.pl, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, filter_low_expr_transcripts.pl, findGffNamesInFasta.pl, find_enrichment.py, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, forge, funannotate, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, gene_list_to_gff.pl, get-genome, getAnnoFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, getSeq, get_FL_accs.pl, get_Trinity_gene_to_trans_map.pl, get_longest_ORF_per_transcript.pl, get_top_longest_fasta_entries.pl, gff2gbSmallDNA.pl, gff2ps_mycustom, gff3_file_to_bed.pl, gff3_file_to_proteins.pl, gff3_gene_to_gtf_format.pl, gff3_genes, gff3_introns, gff3_splicesites, gffGetmRNA.pl, ggsearch36, glsearch36, gmap.nosimd, gmap.sse42, gmap_build, gmap_compress, gmap_process, gmap_reassemble, gmap_uncompress, gmapindex, gmapl, gmapl.nosimd, gmapl.sse42, go_plot.py, gp2othergp.pl, gsnap, gsnap.nosimd, gsnap.sse42, gsnapl, gsnapl.nosimd, gsnapl.sse42, gss-server, gtf2aa.pl, gtf2gff.pl, gtf_genes, gtf_genome_to_cdna_fasta.pl, gtf_introns, gtf_splicesites, gtf_to_alignment_gff3.pl, gtf_to_bed.pl, gtf_transcript_splicesites, gth2gtf.pl, gvf_iit, hal2maf_split.pl, helpMod.pm, hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, hmm-assembler.pl, hmm-info, iit_dump, iit_get, iit_store, insilico_read_normalization.pl, ipcress, iqtree2, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, kadmin.local, kadmind, kallisto, kdb5_util, kprop, kpropd, kproplog, krb5-send-pr, krb5kdc, lalign36, lav2plt.pl, lavplt_ps.pl, lavplt_svg.pl, lighttpd, lighttpd-angel, links2sql.pl, load2sqlitedb, lp_solve, m8_btop_msa.pl, m9B_btop_msa.pl, maf2conswig.pl, makeMatchLists.pl, makeUtrTrainingSet.pl, map_db, map_to_slim.py, maskNregions.pl, md_coords, merge_blast_btab.pl, merge_masking.pl, moveParameters.pl, msa2prfl.pl, ncbi_gene_results_to_python.py, new_species.pl, noncoding-trainer.pl, nr_ORFs_gff3.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, parse_m9.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, patch-hmm.pl, peptides2alternatives.pl, peptides2hints.pl, pfam_runner.pl, phastconsDB2hints.pl, phyml, phyml-mpi, phyrex, phytime, plot_go_term.py, pluginviewer, polyA2hints.pl, prepDE.py, prints2prfl.pl, proteinortho, proteinortho2html.pl, proteinortho2tree.pl, proteinortho2xml.pl, proteinortho6.pl, proteinortho_cleanupblastgraph, proteinortho_clustering, proteinortho_compareProteinorthoGraphs.pl, proteinortho_do_mcl.pl, proteinortho_extract_from_graph.pl, proteinortho_ffadj_mcs.py, proteinortho_formatUsearch.pl, proteinortho_grab_proteins.pl, proteinortho_graphMinusRemovegraph, proteinortho_history.pl, proteinortho_singletons.pl, proteinortho_summary.pl, proteinortho_treeBuilderCore, prt_terms.py, pslCDnaFilter, pslMap.pl, psl_genes, psl_introns, psl_splicesites, randomSplit.pl, ratewig.pl, refine_gff3_group_iso_strip_utrs.pl, refine_hexamer_scores.pl, remove_eclipsed_ORFs.pl, res2R.pl, retrieve_sequences_from_fasta.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, run_CQ-PM_mine.sh, run_CQ-PM_stranded.sh, run_CQ-PM_unstranded.sh, run_DE_analysis.pl, run_DE_analysis_from_samples_file.pl, samMap.pl, sam_sort, saslauthd, scipiogff2gff.pl, score_CDS_likelihood_all_6_frames.pl, select_best_ORFs_per_transcript.pl, seq_n_baseprobs_to_loglikelihood_vals.pl, seqtk-trinity, setStopCodonFreqs.pl, shuffle_embed.pl, sift_bam_max_cov.pl, sim_server, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, slclust, snap, snpindex, splitMfasta.pl, split_wiggle.pl, ssearch36, sserver, sstofa, start_codon_refinement.pl, stringtie, summ_domain_ident.pl, summarizeACGTcontent.pl, tRNAscan-SE, tRNAscan-SE.conf, tantan, testsaslauthd, tfastf36, tfastm36, tfasts36, tfastx36, tfasty36, train_start_PWM.pl, transMap2hints.pl, trnascan-1.4, uniqscan, uniqscanl, uniquePeptides.pl, uri_unescape.pl, utrgff2gbrowse.pl, utrrnaseq, uuserver, vcf_iit, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, wr_hier.py, wr_sections.py, writeResultsPage.pl, yaml2gff.1.4.pl, zff2gff3.pl, augustus, bam2hints, etraining, fastBlockSearch, filterBam, gmap, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign
GITHUB quay.io/biocontainers/funcannot shpc-registry automated BioContainers addition for funcannot funcannot, qdoc3, qmlviewer, qt3to4, qtconfig, qttracereplay, qhelpconverter, qdbus, qdbuscpp2xml, qdbusviewer, qdbusxml2cpp, xmlpatterns, xmlpatternsvalidator, assistant, designer, lconvert
GITHUB quay.io/biocontainers/functools32 shpc-registry automated BioContainers addition for functools32 smtpd.pyc, easy_install-2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5
GITHUB quay.io/biocontainers/funnel shpc-registry automated BioContainers addition for funnel funnel
GITHUB quay.io/biocontainers/fununifrac singularity registry hpc automated addition for fununifrac compute_edges.py, compute_fununifrac.py, create_edge_matrix.py, tjbench, numba, pycc, py.test, pytest, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc, transicc
GITHUB quay.io/biocontainers/fusepy shpc-registry automated BioContainers addition for fusepy easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5
GITHUB quay.io/biocontainers/fusion-filter shpc-registry automated BioContainers addition for fusion-filter atoiindex, blast_and_promiscuity_filter.pl, blast_check_pair.pl, blast_filter.pl, blast_outfmt6_replace_trans_id_w_gene_symbol.pl, build_chr_gene_alignment_index.pl, build_fusion_annot_db_index.pl, build_prot_info_db.pl, cmetindex, cpuid, dbsnp_iit, ensembl_genes, fa_coords, gencode_extract_relevant_gtf_exons.pl, get-genome, gff3_genes, gff3_introns, gff3_splicesites, gmap.nosimd, gmap.sse42, gmap_build, gmap_cat, gmap_process, gmapindex, gmapl, gmapl.nosimd, gmapl.sse42, gsnap, gsnap.nosimd, gsnap.sse42, gsnapl, gsnapl.nosimd, gsnapl.sse42, gtf_file_to_feature_seqs.pl, gtf_genes, gtf_introns, gtf_splicesites, gtf_to_exon_gene_records.pl, gtf_to_gene_spans.pl, gtf_transcript_splicesites, gvf_iit, iit_dump, iit_get, iit_store, index_blast_pairs.pl, index_blast_pairs.remove_gene_pair.pl, index_blast_pairs.remove_overlapping_genes.pl, index_cdna_seqs.pl, index_pfam_domain_info.pl, indexdb_cat, isoform_blast_gene_chr_conversion.pl, isoform_blast_mapping_indexer.pl, just_blast_test.pl, make_super_locus.pl, md_coords, prep_genome_lib.pl, promiscuity_filter.pl, psl_genes, psl_introns, psl_splicesites, remove_long_intron_readthru_transcripts.pl, sam_sort, snpindex, trindex, vcf_iit, gmap, STAR, STARlong, blast_report, blastdb_convert, blastdb_path, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv
GITHUB quay.io/biocontainers/fusion-inspector shpc-registry automated BioContainers addition for fusion-inspector FusionInspector, PtR, Trinity, TrinityStats.pl, Trinity_gene_splice_modeler.py, abundance_estimates_to_matrix.pl, align_and_estimate_abundance.pl, analyze_blastPlus_topHit_coverage.pl, analyze_diff_expr.pl, atoiindex, cmetindex, contig_ExN50_statistic.pl, cpuid, dbsnp_iit, define_clusters_by_cutting_tree.pl, ensembl_genes, extract_supertranscript_from_reference.py, fa_coords, filter_low_expr_transcripts.pl, get-genome, get_Trinity_gene_to_trans_map.pl, gff3_genes, gff3_introns, gff3_splicesites, gmap.sse42, gmap_build, gmap_compress, gmap_process, gmap_reassemble, gmap_uncompress, gmapindex, gmapl, gmapl.sse42, gsnap, gsnap.sse42, gsnapl, gsnapl.sse42, gtf_genes, gtf_introns, gtf_splicesites, gtf_transcript_splicesites, gvf_iit, iit_dump, iit_get, iit_store, insilico_read_normalization.pl, md_coords, psl_genes, psl_introns, psl_splicesites, retrieve_sequences_from_fasta.pl, run_DE_analysis.pl, run_DE_analysis_from_samples_file.pl, sam_sort, seqtk-trinity, sift_bam_max_cov.pl, snpindex, trindex, vcf_iit, gmap, salmon, STAR, STARlong, giffilter, gifsponge, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s
GITHUB quay.io/biocontainers/fusion-report shpc-registry automated BioContainers addition for fusion-report fusion_report, tqdm, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/fusioncatcher-seqtk shpc-registry automated BioContainers addition for fusioncatcher-seqtk seqtk
GITHUB quay.io/biocontainers/fusioncatcher shpc-registry automated BioContainers addition for fusioncatcher
GITHUB quay.io/biocontainers/fwdpp shpc-registry automated BioContainers addition for fwdpp fwdppConfig
GITHUB quay.io/biocontainers/fwdpy shpc-registry automated BioContainers addition for fwdpy
GITHUB quay.io/biocontainers/fwdpy11 shpc-registry automated BioContainers addition for fwdpy11 tskit, numba, pycc, f2py3.6, jsonschema, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m
GITHUB quay.io/biocontainers/fxtract singularity registry hpc automated addition for fxtract fxtract
GITHUB quay.io/biocontainers/ga4ghmongo shpc-registry automated BioContainers addition for ga4ghmongo 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/gaas shpc-registry automated BioContainers addition for gaas bp_einfo, bp_genbank_ref_extractor, gaas_AGP2chromosome.pl, gaas_add_track.rb, gaas_apollo_track_helper.rb, gaas_augustus2grid.pl, gaas_augustus_create_hints.rb, gaas_bam2bigwig.sh, gaas_bam_to_wiggle.py, gaas_bed2wiggle.rb, gaas_bed_create_random_feature.pl, gaas_blastp2grid.pl, gaas_blat2grid.pl, gaas_build_template_WA_1_0_X.rb, gaas_cp_all_links.sh, gaas_create_annotation_project.pl, gaas_create_annotation_project.rb, gaas_create_delivery_dir.sh, gaas_create_preautomated_report.pl, gaas_cufflinks2hints.rb, gaas_embl2gb.pl, gaas_eugene2maker.rb, gaas_exonerate2grid.pl, gaas_fasta_bionano_filter_not_scaffolded_part.pl, gaas_fasta_checkProteins.pl, gaas_fasta_cleaner.pl, gaas_fasta_domain_extractor.pl, gaas_fasta_extractFaFromMultiFa.sh, gaas_fasta_extract_sequence_from_OG.pl, gaas_fasta_extract_sequence_from_id.pl, gaas_fasta_filter_by_size.pl, gaas_fasta_get_longestORF.pl, gaas_fasta_purify.pl, gaas_fasta_removeFromFasta1_intersection_withFasta2ID.pl, gaas_fasta_removeSeqFromIDlist.pl, gaas_fasta_splitMultFastaFile.sh, gaas_fasta_splitter.pl, gaas_fasta_statistics.pl, gaas_fastq_check_sync_pair1_pair2.pl, gaas_fastq_deinterleave_bash.pl, gaas_fastq_guessMyFormat.pl, gaas_fastq_interleave.py, gaas_fastq_pairfq_lite.pl, gaas_gb2embl.pl, gaas_info_BioPerlVersion.sh, gaas_info_find_perl_module.sh, gaas_install_WA_2_0_X.rb, gaas_interpro2grid.pl, gaas_junctions2hints.pl, gaas_lastz2grid.pl, gaas_maker_AEDmeanInGffFile.sh, gaas_maker_AEDplot.pl, gaas_maker_check_progress.sh, gaas_maker_check_progress_deeply.sh, gaas_maker_get_rid_of_contig.pl, gaas_maker_get_rm_genome.pl, gaas_maker_merge_outputs_from_datastore.pl, gaas_maker_merge_outputs_from_index.pl, gaas_maker_moveResultsSafely.sh, gaas_manage_backup.sh, gaas_manage_species.rb, gaas_multiplotAll.R, gaas_ncbi_get_genome_tree.pl, gaas_ncbi_get_reference_data.pl, gaas_ncbi_get_sequence_from_list.pl, gaas_new_species_WA_1_0_X.rb, gaas_orthomcl_analyzeOG.pl, gaas_pasa_create_chunks.rb, gaas_pasa_find_duplicates.rb, gaas_pfam2grid.pl, gaas_prep-contigs.sh, gaas_prepare_matrice_by_window.pl, gaas_protein2hints.rb, gaas_removeIsoforms.sh, gaas_reveal_hidden_characters.pl, gaas_rfam2apollo.rb, gaas_rfam2grid.pl, gaas_rs_PlotDensityAEDFromMakerAnnotationFiles.R, gaas_rs_PlotDensityOneRowPerFile.R, gaas_scaffold2AGP.pl, gaas_scipio2grid.pl, gaas_screen_mito_tblastn.pl, gaas_setup_rakefile.rb, gaas_snap_train.sh, gaas_sr_AllResu_AllIntervalPlotMean.R, gaas_sr_MadeGraphAndRegByInterval.R, gaas_sr_Mean2col_AllIntervalPlotMean.R, gaas_sr_Mean2col_PlotPoints.R, gaas_sr_Mean2col_PlotPointsAndRegs.R, gaas_sync_dat_and_embl.pl, gaas_sync_user_db.rb, gaas_synplot.R, gaas_synplot.pl, gaas_tblastn2grid.pl, gaas_transplant.rb, gaas_transposonPSI2grid.pl, gaas_trnascan2grid.pl, gaas_unlink_all.sh, gdlib-config, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml, basemlg, chi2, codeml, evolver
GITHUB quay.io/biocontainers/gadem shpc-registry automated BioContainers addition for gadem gadem
GITHUB quay.io/biocontainers/gadma shpc-registry automated BioContainers addition for gadma demes, gadma, gadma-get_confidence_intervals, gadma-get_confidence_intervals_for_ld, gadma-precompute_ld_data, gadma-run_ls_on_boot_data, dask-scheduler, dask-ssh, dask-worker, bokeh, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.8
GITHUB quay.io/biocontainers/gafpack singularity registry hpc automated addition for gafpack gafpack
GITHUB quay.io/biocontainers/gaftools singularity registry hpc automated addition for gaftools gaftools, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config
GITHUB quay.io/biocontainers/gait-gm shpc-registry automated BioContainers addition for gait-gm add_group_rank.py, add_kegg_anno_info.py, add_kegg_pathway_info.py, add_pval_flags.py, all_by_all_correlation.py, anova_fixed.py, bland_altman_plot.py, blank_feature_filtering_flags.py, coefficient_variation_flags.py, compare_flags.py, compound_identification.py, data_normalization_and_rescaling.py, distribution_features.py, distribution_samples.py, ensembl2symbol.py, hierarchical_clustering_heatmap.py, imputation.py, kruskal_wallis.py, lasso_enet_var_select.py, linear_discriminant_analysis.py, log_and_glog_transformation.py, magnitude_difference_flags.py, mahalanobis_distance.py, merge_flags.py, modify_design_file.py, modulated_modularity_clustering.py, multiple_testing_adjustment.py, mzrt_match.py, partial_least_squares.py, principal_component_analysis.py, random_forest.py, remove_selected_features_samples.py, remove_user_specified_row_col.py, retention_time_flags.py, run_order_regression.py, sPLS.py, scatter_plot_2D.py, scatter_plot_3D.py, split_wide_dataset.py, standardized_euclidean_distance.py, subset_data.py, summarize_flags.py, svm_classifier.py, tab-to-vcf, threshold_based_flags.py, ttest.py, ttest_perm.py, ttest_single_group.py, vcf-haplotypes, fill-aa, fill-an-ac, fill-fs, fill-ref-md5, vcf-annotate, vcf-compare, vcf-concat, vcf-consensus, vcf-contrast, vcf-convert
GITHUB quay.io/biocontainers/galah shpc-registry automated BioContainers addition for galah dashing, galah, fastANI, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/galaxy-containers shpc-registry automated BioContainers addition for galaxy-containers cheetah, cheetah-analyze, cheetah-compile, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py, rst2xetex.py
GITHUB quay.io/biocontainers/galaxy-data shpc-registry automated BioContainers addition for galaxy-data bagit.py, bagit_profile.py, bdbag, bdbag-utils, cheetah, cheetah-analyze, cheetah-compile, galaxy-build-objects, galaxy-manage-db, gx-fastq-combiner, gx-fastq-filter, gx-fastq-groomer, gx-fastq-manipulation, gx-fastq-masker-by-quality, gx-fastq-paired-end-deinterlacer, gx-fastq-paired-end-interlacer, gx-fastq-paired-end-joiner, gx-fastq-paired-end-splitter, gx-fastq-stats, gx-fastq-to-fasta, gx-fastq-to-tabular, gx-fastq-trimmer, gx-fastq-trimmer-by-quality, migrate, migrate-repository, sqlformat, pbr, docutils, pybabel, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py
GITHUB quay.io/biocontainers/galaxy-files singularity registry hpc automated addition for galaxy-files cheetah, cheetah-analyze, cheetah-compile, docutils, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py, rst2xetex.py, rst2xml.py, rstpep2html.py, futurize, pasteurize, normalizer, python3.1
GITHUB quay.io/biocontainers/galaxy-ie-helpers shpc-registry automated BioContainers addition for galaxy-ie-helpers get, get_user_history, put, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier
GITHUB quay.io/biocontainers/galaxy-ml shpc-registry automated BioContainers addition for galaxy-ml flatc, import_pb_to_tensorboard, xgboost, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, pyrsa-decrypt
GITHUB quay.io/biocontainers/galaxy-objectstore shpc-registry automated BioContainers addition for galaxy-objectstore cheetah, cheetah-analyze, cheetah-compile, docutils, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py
GITHUB quay.io/biocontainers/galaxy-ops shpc-registry automated BioContainers addition for galaxy-ops aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py
GITHUB quay.io/biocontainers/galaxy-parsec shpc-registry automated BioContainers addition for galaxy-parsec bioblend-galaxy-tests, parsec, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier
GITHUB quay.io/biocontainers/galaxy-schema singularity registry hpc automated addition for galaxy-schema cheetah, cheetah-analyze, cheetah-compile, email_validator, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex, rst2xml, docutils, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, futurize, pasteurize, normalizer
GITHUB quay.io/biocontainers/galaxy-tool-util shpc-registry automated BioContainers addition for galaxy-tool-util cheetah, cheetah-analyze, cheetah-compile, galaxy-tool-test, mulled-build, mulled-build-channel, mulled-build-files, mulled-build-tool, mulled-list, mulled-search, mulled-update-singularity-containers, conda-env, cph, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py
GITHUB quay.io/biocontainers/galaxy-upload shpc-registry automated BioContainers addition for galaxy-upload bioblend-galaxy-tests, galaxy-history-search, galaxy-upload, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier
GITHUB quay.io/biocontainers/galaxy-util shpc-registry automated BioContainers addition for galaxy-util cheetah, cheetah-analyze, cheetah-compile, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py, rst2xetex.py
GITHUB quay.io/biocontainers/galaxy-workflow-executor shpc-registry automated BioContainers addition for galaxy-workflow-executor bioblend-galaxy-tests, generate_params_from_workflow.py, run_galaxy_workflow.py, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier
GITHUB quay.io/biocontainers/galaxy_sequence_utils shpc-registry automated BioContainers addition for galaxy_sequence_utils gx-fastq-combiner, gx-fastq-filter, gx-fastq-groomer, gx-fastq-manipulation, gx-fastq-masker-by-quality, gx-fastq-paired-end-deinterlacer, gx-fastq-paired-end-interlacer, gx-fastq-paired-end-joiner, gx-fastq-paired-end-splitter, gx-fastq-stats, gx-fastq-to-fasta, gx-fastq-to-tabular, gx-fastq-trimmer, gx-fastq-trimmer-by-quality, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/galaxyxml shpc-registry automated BioContainers addition for galaxyxml futurize, pasteurize, xslt-config, xsltproc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/galitime singularity registry hpc automated addition for galitime galitime, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config
GITHUB quay.io/biocontainers/galru shpc-registry automated BioContainers addition for galru galru, galru_create_database, galru_create_species, galru_shrink_database, mlst, ncbi-genome-download, ngd, any2fasta, fastaq, minced, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl
GITHUB quay.io/biocontainers/gambit singularity registry hpc automated addition for gambit alembic, gambit, mako-render, f2py3.9, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp, h5perf_serial, h5redeploy, h5repack, h5repart, h5stat, h5unjam, h5dump, h5cc, 2to3-3.9
GITHUB quay.io/biocontainers/gametes singularity registry hpc automated addition for gametes gametes, jwebserver, pcre2posix_test, jpackage, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, cups-config, ippeveprinter, ipptool, hb-info, tjbench, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java
GITHUB quay.io/biocontainers/gamma shpc-registry automated BioContainers addition for gamma GAMMA-S.py, GAMMA.py, faToNib, gfClient, gfServer, nibFrag, pslPretty, pslReps, pslSort, twoBitToFa, blat, unidecode, twoBitInfo, faToTwoBit, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1
GITHUB quay.io/biocontainers/gangstr shpc-registry automated BioContainers addition for gangstr GangSTR, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/ganon shpc-registry automated BioContainers addition for ganon binpacking, ganon, ganon-build, ganon-classify, ganon-get-seq-info.sh, taxsbp, egrep, fgrep, grep, tar, gawk-5.1.0, basenc, b2sum, awk, base32, base64
GITHUB quay.io/biocontainers/gap shpc-registry automated BioContainers addition for gap
GITHUB quay.io/biocontainers/gap2seq shpc-registry automated BioContainers addition for gap2seq Gap2Seq, Gap2Seq-core, GapCutter, GapMerger, ReadFilter, htsfile, bgzip, tabix, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/gapfiller shpc-registry automated BioContainers addition for gapfiller GapFiller
GITHUB quay.io/biocontainers/gapless singularity registry hpc automated addition for gapless f2py3.11, gapless.py, gapless.sh, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc
GITHUB quay.io/biocontainers/gapmm2 singularity registry hpc automated addition for gapmm2 gapmm2, minimap2.py, natsort, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config
GITHUB quay.io/biocontainers/gappa shpc-registry automated BioContainers addition for gappa gappa
GITHUB quay.io/biocontainers/gapseq singularity registry hpc automated addition for gapseq gapseq, install_archived_sybilSBML.sh, update_sequences.sh, esd2esi, exonerate, exonerate-server, fasta2esd, fastaannotatecdna, fastachecksum, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasubseq, fastatranslate, fastavalidcds, ipcress
GITHUB quay.io/biocontainers/gargammel-slim shpc-registry automated BioContainers addition for gargammel-slim adptSim, deamSim, fragSim
GITHUB quay.io/biocontainers/gargammel shpc-registry automated BioContainers addition for gargammel
GITHUB quay.io/biocontainers/garnet shpc-registry automated BioContainers addition for garnet easy_install-3.6, qhelpconverter, pylupdate5, pyrcc5, pyuic5, sip, qdoc, gst-device-monitor-1.0, gst-discoverer-1.0, gst-play-1.0
GITHUB quay.io/biocontainers/garnett-cli shpc-registry automated BioContainers addition for garnett-cli garnett_check_markers.R, garnett_classify_cells.R, garnett_cli_post_install_tests.bats, garnett_cli_post_install_tests.sh, garnett_get_feature_genes.R, garnett_train_classifier.R, make_test_data.R, parse_expr_data.R, build_env_setup.sh, conda_build.sh, gio-launch-desktop, c89, c99
GITHUB quay.io/biocontainers/gassst singularity registry hpc automated addition for gassst Gassst
GITHUB quay.io/biocontainers/gat shpc-registry automated BioContainers addition for gat gat-compare.py, gat-great.py, gat-plot.py, gat-run.py, msgattrib, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, qwebengine_convert_dict
GITHUB quay.io/biocontainers/gatb shpc-registry automated BioContainers addition for gatb dbgh5, dbginfo, leon, mirror_server, mirror_server_stop, f2py3.10, h5clear, h5format_convert, h5watch, h5fc, 2to3-3.10, idle3.10, pydoc3.10
GITHUB quay.io/biocontainers/gatk-framework shpc-registry automated BioContainers addition for gatk-framework gatk-framework, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer
GITHUB quay.io/biocontainers/gatk shpc-registry automated BioContainers addition for gatk
GITHUB quay.io/biocontainers/gatk4-spark shpc-registry automated BioContainers addition for gatk4-spark gatk, x86_64-conda_cos7-linux-gnu-ld, cups-config, ippeveprinter, ipptool, jfr, jaotc, aserver, jdeprscan, jhsdb
GITHUB quay.io/biocontainers/gatk4 shpc-registry automated BioContainers addition for gatk4 gatk
GITHUB quay.io/biocontainers/gatktool shpc-registry automated BioContainers addition for gatktool 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv
GITHUB quay.io/biocontainers/gawk shpc-registry automated BioContainers addition for gawk gawk, gawk-5.1.0, awk
GITHUB quay.io/biocontainers/gb-io singularity registry hpc automated addition for gb-io 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config
GITHUB quay.io/biocontainers/gb_taxonomy_tools shpc-registry automated BioContainers addition for gb_taxonomy_tools gid-taxid, taxonomy-reader, taxonomy2tree, tree2ps
GITHUB quay.io/biocontainers/gbintk singularity registry hpc automated addition for gbintk combine_cov, gbintk, graphbin, graphbin2, metacoag, prepResult, FragGeneScan, run_FragGeneScan.pl, pbr, igraph, numpy-config, x86_64-conda-linux-gnu-pkg-config, pkg-config, pkg-config.bin, tabulate, numba, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask
GITHUB quay.io/biocontainers/gbkviz singularity registry hpc automated addition for gbkviz base58, csv-import, delta2vcf, elasticurl, elasticurl_cpp, elastipubsub, gbkviz_webapp, orc-memory, orc-scan, pysemver, streamlit, streamlit.cmd, timezone-dump, watchmedo, jupyter-execute, jupyter-dejavu, send2trash, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run
GITHUB quay.io/biocontainers/gblocks shpc-registry automated BioContainers addition for gblocks Gblocks
GITHUB quay.io/biocontainers/gbmunge shpc-registry automated BioContainers addition for gbmunge gbmunge
GITHUB quay.io/biocontainers/gbsx shpc-registry automated BioContainers addition for gbsx gbsx, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/gc-meox-tms singularity registry hpc automated addition for gc-meox-tms fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc, transicc
GITHUB quay.io/biocontainers/gcen shpc-registry automated BioContainers addition for gcen calculate_accuracy, csv_to_tsv, data_filter, data_norm, data_stat, enrich, generate_expr_matrix_from_rsem, generate_expr_matrix_from_stringtie, module_identify, network_build, network_extract, network_merge, network_shuffle, network_stat, rwr, tsv_to_csv, annotate
GITHUB quay.io/biocontainers/gclib shpc-registry automated BioContainers addition for gclib gtest, threads
GITHUB quay.io/biocontainers/gcluster shpc-registry automated BioContainers addition for gcluster Gcluster.pl, interested_gene_generation.pl, test.pl, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray, mcxassemble
GITHUB quay.io/biocontainers/gcnvkernel shpc-registry automated BioContainers addition for gcnvkernel theano-cache, theano-nose, mako-render, compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, f2py3.6, certutil
GITHUB quay.io/biocontainers/gcs-oauth2-boto-plugin shpc-registry automated BioContainers addition for gcs-oauth2-boto-plugin pyrsa-decrypt-bigfile, pyrsa-encrypt-bigfile, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin
GITHUB quay.io/biocontainers/gcta shpc-registry automated BioContainers addition for gcta gcta64
GITHUB quay.io/biocontainers/gctb singularity registry hpc automated addition for gctb gctb
GITHUB quay.io/biocontainers/gdal shpc-registry automated BioContainers addition for gdal epsg_tr.py, esri2wkt.py, gcps2vec.py, gcps2wld.py, gdal-config, gdal2tiles.py, gdal2xyz.py, gdal_auth.py, gdal_calc.py, gdal_contour, gdal_edit.py, gdal_fillnodata.py, gdal_grid, gdal_merge.py, gdal_pansharpen.py, gdal_polygonize.py, gdal_proximity.py, gdal_rasterize, gdal_retile.py, gdal_sieve.py, gdal_translate, gdaladdo, gdalbuildvrt, gdalchksum.py, gdalcompare.py, gdaldem, gdalenhance, gdalident.py, gdalimport.py, gdalinfo, gdallocationinfo, gdalmanage, gdalmove.py, gdalserver, gdalsrsinfo, gdaltindex, gdaltransform, gdalwarp, mkgraticule.py, nad2bin, ogrmerge.py, pct2rgb.py, rgb2pct.py, testepsg, pg_standby, conv-template, from-template, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo
GITHUB quay.io/biocontainers/gdc-client shpc-registry automated BioContainers addition for gdc-client gdc-client, ndg_httpclient, jsonschema, xslt-config, xsltproc, chardetect, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m
GITHUB quay.io/biocontainers/gdc shpc-registry automated BioContainers addition for gdc
GITHUB quay.io/biocontainers/gdk-pixbuf shpc-registry automated BioContainers addition for gdk-pixbuf gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner
GITHUB quay.io/biocontainers/gdmicro singularity registry hpc automated addition for gdmicro gdmicro, matplotlib, torchrun, ninja, convert-caffe2-to-onnx, convert-onnx-to-caffe2, iptest3, iptest, ipython3, ipython, protoc, pygmentize, f2py3.7, pandoc, fonttools, pyftmerge, pyftsubset, ttx, brotli, 2to3-3.7, idle3.7, pydoc3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, python3.7
GITHUB quay.io/biocontainers/gdsctools shpc-registry automated BioContainers addition for gdsctools gdsctools_anova, gdsctools_regression, easydev_buildPackage, ibrowse, multigit, browse, runxlrd.py, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel
GITHUB quay.io/biocontainers/gecco shpc-registry automated BioContainers addition for gecco gecco, pyrodigal, cmark, tabulate, pygmentize, tqdm, futurize, pasteurize, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10
GITHUB quay.io/biocontainers/gecko shpc-registry automated BioContainers addition for gecko FragHits, allVsAll.sh, combineFrags, comparison.sh, csvExtractBorders, csvFrags2text, dictionary.sh, filterFrags, filterHits, fragStat, frags2align.sh, frags2borders.sh, frags2text, getInfo, hdStat, hits, hitsStat, indexmaker, matrix.mat, reverseComplement, sortHits, sortWords, w2hd, words, wordsStat, workflow.sh
GITHUB quay.io/biocontainers/geco2 shpc-registry automated BioContainers addition for geco2 GeCo2, GeDe2
GITHUB quay.io/biocontainers/geco3 shpc-registry automated BioContainers addition for geco3 GeCo3, GeDe3
GITHUB quay.io/biocontainers/gecode shpc-registry automated BioContainers addition for gecode all-interval, alpha, bacp, bibd, bin-packing, black-hole, car-sequencing, cartesian-heart, colored-matrix, crew, crossword, crowded-chess, descartes-folium, dominating-queens, domino, donald, efpa, eq20, fzn-gecode, golf, golomb-ruler, graph-color, grocery, hamming, ind-set, job-shop, kakuro, knights, langford-number, magic-sequence, magic-square, minesweeper, money, multi-bin-packing, mzn-gecode, nonogram, open-shop, ortho-latin, partition, pentominoes, perfect-square, photo, qcp, queen-armies, queens, radiotherapy, sat, schurs-lemma, sports-league, steel-mill, steiner, sudoku, sudoku-advanced, tsp, warehouses, word-square
GITHUB quay.io/biocontainers/gefast shpc-registry automated BioContainers addition for gefast GeFaST
GITHUB quay.io/biocontainers/gem3-mapper shpc-registry automated BioContainers addition for gem3-mapper gem-indexer, gem-mapper, gem-retriever
GITHUB quay.io/biocontainers/gembs shpc-registry automated BioContainers addition for gembs bs_call, dbSNP_idx, gem-indexer, gem-mapper, gem-retriever, gemBS, wigToBigWig, bedToBigBed, get_objgraph, gff2gff.py, undill, pigz, unpigz, my_print_defaults, mysql_config, perror
GITHUB quay.io/biocontainers/gemf_favites singularity registry hpc automated addition for gemf_favites GEMF, GEMF_FAVITES.py, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config
GITHUB quay.io/biocontainers/gemini shpc-registry automated BioContainers addition for gemini bottle.py, dask-mpi, dask-remote, dask-submit, gemini, grabix, ipcluster, ipcontroller, ipengine, iptest2, ipython2, unidecode, cyvcf2, dask-scheduler, dask-ssh, dask-worker, jupyter-kernel, jupyter-kernelspec, jupyter-run, aggregate_scores_in_intervals.py, align_print_template.py
GITHUB quay.io/biocontainers/gemma shpc-registry automated BioContainers addition for gemma gemma
GITHUB quay.io/biocontainers/gemoma shpc-registry automated BioContainers addition for gemoma GeMoMa, mmseqs, gawk-5.1.0, CA.pm, awk, cacert.pem, gawk, index-themes, fetch-extras, go.mod, go.sum
GITHUB quay.io/biocontainers/gempipe singularity registry hpc automated addition for gempipe PF00225_full.blocks.txt, PF00225_seed.blocks.txt, add_name_to_gff3.pl, aln2wig, augustify.py, bloomfilterparser.sh, bsmp2info, busco, create_dbs.py, depinfo, download_eggnog_data.py, emapper.py, executeTestCGP.py, extractAnno.py, findRepetitiveProtSeqs.py, fsa2xml, gbf2info, gempipe, generate_plot.py, get_loci_from_gb.pl, gimme_taxa.py, hmm_mapper.py, hmm_server.py, hmm_worker.py, just-top-hits, metaeuk, miniprot, ncbi-genome-download, ngd, pp_simScore, rename_species.pl, run-sepp.sh, run_abundance.py, run_sepp.py, run_tipp.py, run_tipp_tool.py, run_upp.py, seppJsonMerger.jar, split_sequences.py, stringtie2fa.py, systematic-mutations, bamToWig.py, compare_masking.pl, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, merge_masking.pl, Xcalcmem.sh, aa2nonred.pl, cdbfasta, cdbyank, compileSpliceCands, computeFlankingRegion.pl, eval_multi_gtf.pl, filterGenesIn.pl, findGffNamesInFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, gtf2aa.pl, gth2gtf.pl, setStopCodonFreqs.pl, tbl2asn-test, utrrnaseq, hmmc2, hmmerfm-exactmatch, SplicedAlignment.pm, augustus2browser.pl
GITHUB quay.io/biocontainers/genbank_to singularity registry hpc automated addition for genbank_to genbank_to, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py, bed_count_overlapping.py, bed_coverage.py, bed_coverage_by_interval.py, bed_diff_basewise_summary.py, bed_extend_to.py, bed_intersect.py, bed_intersect_basewise.py, bed_merge_overlapping.py, bed_rand_intersect.py, bed_subtract_basewise.py, bnMapper.py, div_snp_table_chr.py, find_in_sorted_file.py, gene_fourfold_sites.py, get_scores_in_intervals.py
GITHUB quay.io/biocontainers/genblastg shpc-registry automated BioContainers addition for genblastg genblastG, test_pcre, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, seedtop, blast_formatter, blastdb_aliastool, blastdbcheck, blastdbcmd
GITHUB quay.io/biocontainers/genclust shpc-registry automated BioContainers addition for genclust genclust
GITHUB quay.io/biocontainers/gencore shpc-registry automated BioContainers addition for gencore gencore, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/gencove singularity registry hpc automated addition for gencove gencove, jp.py, py.test, pytest, normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1
GITHUB quay.io/biocontainers/gene-trajectory-python singularity registry hpc automated addition for gene-trajectory-python qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, igraph, h5tools_test_utils, scanpy, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, h5delete
GITHUB quay.io/biocontainers/genefuse shpc-registry automated BioContainers addition for genefuse genefuse
GITHUB quay.io/biocontainers/geneimpacts shpc-registry automated BioContainers addition for geneimpacts 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/genenotebook shpc-registry automated BioContainers addition for genenotebook genenotebook, install_compass, mongo, mongod, mongos, node, npm, npx, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides
GITHUB quay.io/biocontainers/genepender shpc-registry automated BioContainers addition for genepender genepender, qdoc3, qmlviewer, qt3to4, qtconfig, qttracereplay, qhelpconverter, qdbus, qdbuscpp2xml, qdbusviewer, qdbusxml2cpp, xmlpatterns, xmlpatternsvalidator, assistant, designer, lconvert
GITHUB quay.io/biocontainers/genepop shpc-registry automated BioContainers addition for genepop Genepop
GITHUB quay.io/biocontainers/generax shpc-registry automated BioContainers addition for generax generax, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun
GITHUB quay.io/biocontainers/genericrepeatfinder shpc-registry automated BioContainers addition for genericrepeatfinder grf-alignment, grf-alignment2, grf-dbn, grf-filter, grf-intersperse, grf-main, grf-mite-cluster, grf-nest, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div, cd-hit-div.pl
GITHUB quay.io/biocontainers/genesplicer shpc-registry automated BioContainers addition for genesplicer genesplicer
GITHUB quay.io/biocontainers/genewalk shpc-registry automated BioContainers addition for genewalk compare_gos.py, fetch_associations.py, find_enrichment.py, genewalk, go_plot.py, map_to_slim.py, ncbi_gene_results_to_python.py, plot_go_term.py, prt_terms.py, wr_hier.py, wr_sections.py, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier
GITHUB quay.io/biocontainers/genie shpc-registry automated BioContainers addition for genie bolt, genie
GITHUB quay.io/biocontainers/genin2 singularity registry hpc automated addition for genin2 genin2, idle3.13, pydoc3.13, python3.13, python3.13-config, numpy-config, normalizer
GITHUB quay.io/biocontainers/genion singularity registry hpc automated addition for genion genion
GITHUB quay.io/biocontainers/genmap shpc-registry automated BioContainers addition for genmap genmap
GITHUB quay.io/biocontainers/genmod shpc-registry automated BioContainers addition for genmod genmod, ped_parser, py.test, pytest, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/geno2phenotb singularity registry hpc automated addition for geno2phenotb GenomeAnalysisTK, MTBseq, gatk3, geno2phenotb, picard, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd, schemagen, servertool, tnameserv, wsgen, wsimport, xjc, qualfa2fq.pl, xa2multi.pl, bwa, f2py3.7, jfr, 2to3-3.7
GITHUB quay.io/biocontainers/genoboo singularity registry hpc automated addition for genoboo genoboo, meteor, mongo, mongod, mongos, node, npm, npx, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl, sort-table, spdi2tbl, split-at-intron, tbl2xml, transmute.Linux, xml2fsa
GITHUB quay.io/biocontainers/genodsp singularity registry hpc automated addition for genodsp genodsp
GITHUB quay.io/biocontainers/genoflu singularity registry hpc automated addition for genoflu genoflu.py, test_pcre, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs
GITHUB quay.io/biocontainers/genologics shpc-registry automated BioContainers addition for genologics chardetect, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/genomad singularity registry hpc automated addition for genomad aria2c, flatc, genomad, h5delete, import_pb_to_tensorboard, markdown-it, prodigal-gv, rich-click, aec, mmseqs, xgboost, estimator_ckpt_converter, aragorn, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2, gawk-5.1.0, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, awk, gawk, numba, pycc, pyrsa-decrypt
GITHUB quay.io/biocontainers/genome2tree singularity registry hpc automated addition for genome2tree Genome2Tree.py, clipkit, convert_orthofinder_tree_ids.py, fastme, gawk-5.3.1, make_ultrametric.py, orthofinder, phykit, pk_al, pk_alignment_length, pk_alignment_length_no_gaps, pk_alignment_recoding, pk_aln_len, pk_aln_len_no_gaps, pk_aln_recoding, pk_alng, pk_bipartition_support_stats, pk_blm, pk_branch_length_multiplier, pk_bss, pk_cb, pk_cbps, pk_cc, pk_clan_check, pk_collapse, pk_collapse_branches, pk_column_score, pk_comp_bias_per_site, pk_compositional_bias_per_site, pk_covarying_evolutionary_rates, pk_cover, pk_create_concat, pk_create_concatenation_matrix, pk_cs, pk_degree_of_violation_of_a_molecular_clock, pk_dvmc, pk_erps, pk_evo_rate, pk_evo_rate_per_site, pk_evolutionary_rate, pk_evolutionary_rate_per_site, pk_faidx, pk_gc, pk_gc_content, pk_ge, pk_get_entry, pk_hidden_paralogy_check, pk_ibs, pk_il, pk_internal_branch_stats, pk_internode_labeler, pk_is_monophyletic, pk_labels, pk_last_common_ancestor_subtree, pk_lb_score, pk_lbs, pk_lca_subtree, pk_long_branch_score, pk_monophyly_check, pk_nearest_neighbor_interchange, pk_nni, pk_p2n, pk_pairwise_id, pk_pairwise_identity, pk_pal2nal, pk_parsimony_informative_sites, pk_patristic_distances, pk_pd, pk_pi, pk_pis, pk_polyt, pk_polyt_test, pk_polytomy_test, pk_print, pk_print_tree, pk_prune, pk_prune_tree, pk_pt, pk_ptt, pk_rcv, pk_rcvt, pk_recode, pk_rel_comp_var, pk_rel_comp_var_taxon, pk_relative_composition_variability, pk_relative_composition_variability_taxon, pk_rename_fasta, pk_rename_fasta_entries, pk_rename_tips, pk_rename_tree, pk_rename_tree_tips, pk_rf, pk_rf_dist, pk_rf_distance, pk_robinson_foulds_distance, pk_root, pk_root_tree, pk_rt, pk_sat, pk_saturation, pk_sop, pk_sops, pk_spurious_seq, pk_spurious_sequence, pk_ss, pk_sum_of_pairs_score, pk_t2t, pk_t2t_dist, pk_t2t_nd, pk_t2t_node_dist, pk_tbs, pk_terminal_branch_stats, pk_thread_dna, pk_tip_labels, pk_tip_to_tip_distance, pk_tip_to_tip_node_distance, pk_tl, pk_tness, pk_tor, pk_total_tree_length, pk_toverr, pk_tree_labels, pk_tree_len, pk_treeness, pk_treeness_over_rcv, pk_variable_sites, pk_vs, primary_transcript.py, rcl, rcl-dot-resmap.pl, rcl-qc, rcl-qm.R, rcl-relevel.pl, rcl-select.pl, rcldo.pl, raxml-ng, raxml-ng-mpi, iqtree2, bsmp2info, fsa2xml, gbf2info, just-top-hits, mclblastline, mcxdeblast, systematic-mutations, clm, clxdo, mcl, mcx, mcxarray, mcxdump, mcxi, mcxload, mcxmap, mcxsubs, aria2c, iqtree, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS
GITHUB quay.io/biocontainers/genome_updater shpc-registry automated BioContainers addition for genome_updater genome_updater.sh, bc, dc, tar, gawk-5.1.0, basenc, b2sum, awk, base32, base64, basename
GITHUB quay.io/biocontainers/genomebaser shpc-registry automated BioContainers addition for genomebaser GenomeBaser, sample, easy_install-2.7, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5
GITHUB quay.io/biocontainers/genomeconstellation shpc-registry automated BioContainers addition for genomeconstellation jgi_gc
GITHUB quay.io/biocontainers/genomedata shpc-registry automated BioContainers addition for genomedata bigWigToBedGraph, filter, genomedata-close-data, genomedata-erase-data, genomedata-hardmask, genomedata-histogram, genomedata-info, genomedata-load, genomedata-load-assembly, genomedata-load-data, genomedata-load-seq, genomedata-open-data, genomedata-query, genomedata-report, hidehead, innerjoin, intersect, mean, nohead, run_genomedata_tests.py, test_genomedata.py, pt2to3, ptdump, ptrepack, pttree, my_print_defaults, mysql_config, perror, mirror_server, mirror_server_stop, shiftBed
GITHUB quay.io/biocontainers/genomelake shpc-registry automated BioContainers addition for genomelake dask-remote, dask-submit, dask-scheduler, dask-ssh, dask-worker, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py
GITHUB quay.io/biocontainers/genomepy shpc-registry automated BioContainers addition for genomepy
GITHUB quay.io/biocontainers/genomescope2 shpc-registry automated BioContainers addition for genomescope2 genomescope2, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/genomestrip shpc-registry automated BioContainers addition for genomestrip genomestrip, fasta-sanitize.pl, plot-ampliconstats, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod
GITHUB quay.io/biocontainers/genometester4 shpc-registry automated BioContainers addition for genometester4 glistcompare, glistmaker, glistquery, gmer_caller, gmer_counter
GITHUB quay.io/biocontainers/genomethreader shpc-registry automated BioContainers addition for genomethreader gth, gthclean.sh, gthcleanrec.sh, gthconsensus, gthfilestat, gthgetseq, gthsplit, gthsplit2dim.sh
GITHUB quay.io/biocontainers/genometools-genometools shpc-registry automated BioContainers addition for genometools-genometools genometools-config, gt, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config
GITHUB quay.io/biocontainers/genometools shpc-registry automated BioContainers addition for genometools
GITHUB quay.io/biocontainers/genometreetk shpc-registry automated BioContainers addition for genometreetk _ssu-align, _ssu-build, _ssu-draw, _ssu-mask, _ssu-merge, _ssu-prep, abi-dump.2.10.8, align-cache.2.10.8, align-info.2.10.8, bam-load.2.10.8, cache-mgr.2.10.8, cg-load.2.10.8, fasterq-dump-orig.2.10.8, fasterq-dump.2.10.8, fastq-dump-orig.2.10.8, fastq-dump.2.10.8, genometreetk, illumina-dump.2.10.8, kar.2.10.8, kdbmeta.2.10.8, kget.2.10.8, latf-load.2.10.8, md5cp.2.10.8, mothur, prefetch-orig.2.10.8, prefetch.2.10.8, rcexplain.2.10.8, read-filter-redact.2.10.8, sam-dump-orig.2.10.8, sam-dump.2.10.8, sff-dump.2.10.8, sra-pileup-orig.2.10.8, sra-pileup.2.10.8, sra-sort-cg.2.10.8, sra-sort.2.10.8, sra-stat.2.10.8, srapath-orig.2.10.8, srapath.2.10.8, sratools.2.10.8, ssu-align, ssu-build, ssu-cmalign, ssu-cmbuild, ssu-cmcalibrate, ssu-cmemit, ssu-cmfetch, ssu-cmscore, ssu-cmsearch, ssu-cmstat, ssu-draw, ssu-esl-afetch, ssu-esl-alimanip, ssu-esl-alimap, ssu-esl-alimask, ssu-esl-alimerge, ssu-esl-alistat, ssu-esl-cluster, ssu-esl-compalign, ssu-esl-compstruct, ssu-esl-histplot, ssu-esl-mask, ssu-esl-reformat, ssu-esl-selectn, ssu-esl-seqrange, ssu-esl-seqstat, ssu-esl-sfetch, ssu-esl-shuffle, ssu-esl-ssdraw, ssu-esl-weight, ssu-mask, ssu-merge, ssu-prep, test-sra.2.10.8, uchime, vdb-config.2.10.8, vdb-copy.2.10.8, vdb-decrypt.2.10.8, vdb-diff.2.10.8, vdb-dump-orig.2.10.8, vdb-dump.2.10.8, vdb-encrypt.2.10.8, vdb-lock.2.10.8, vdb-passwd.2.10.8, vdb-unlock.2.10.8, vdb-validate.2.10.8, align-cache.2, md5cp.2, read-filter-redact.2, sra-sort-cg.2, vdb-diff.2, align-cache, fasterq-dump-orig, fastq-dump-orig, md5cp, prefetch-orig
GITHUB quay.io/biocontainers/genomic_address_service singularity registry hpc automated addition for genomic_address_service cmtime, cpuinfo, gas, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, mckey, protoc-24.3.0, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, ucmatose, udaddy, udpong, h5fuse.sh, io_demo, ucx_info, ucx_perftest, ucx_read_profile, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, h5delete, gflags_completions.sh, pt2to3
GITHUB quay.io/biocontainers/genomic_regions shpc-registry automated BioContainers addition for genomic_regions convert-regions, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, futurize, pasteurize
GITHUB quay.io/biocontainers/genomicassertions shpc-registry automated BioContainers addition for genomicassertions vcf_sample_filter.py, vcf_filter.py, vcf_melt, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config
GITHUB quay.io/biocontainers/genomicconsensus shpc-registry automated BioContainers addition for genomicconsensus ccache-swig, dataset.py, gffToBed, gffToVcf, pbservice, plurality, quiver, summarizeConsensus, swig, variantCaller, unit2, avro, cygdb, cython, cythonize, jsonschema, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl
GITHUB quay.io/biocontainers/genomics-data-index singularity registry hpc automated addition for genomics-data-index attr, balsam, dumpsexp, gdi, getfattr, gpg-error, gpg-error-config, gpgrt-config, hmac256, ipython3.9, iqtree2, jackd, lame, libgcrypt-config, lprodump, lrelease-pro, lupdate-pro, meshdebug, mpg123, mpg123-id3dump, mpg123-strip, mpicalc, orc-bugreport, orcc, out123, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, pulseaudio, pyppeteer-install, qmlformat, qmltime, qmltyperegistrar, qpaeq, seqrepo, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, sourmash, sqlformat, tracegen, yat2m, yoyo, yoyo-migrate, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, stone, plac_runner.py, screed, yte, iqtree, snpEff, docutils, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin
GITHUB quay.io/biocontainers/genonets shpc-registry automated BioContainers addition for genonets igraph, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis, ndmetis, glpsol, tqdm, f2py3.9
GITHUB quay.io/biocontainers/genotyphi shpc-registry automated BioContainers addition for genotyphi genotyphi, genotyphi.py, parse_typhi_mykrobe.py, gff2gff.py, guess-ploidy.py, plot-roh.py, run-roh.pl, f2py2, f2py2.7, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl
GITHUB quay.io/biocontainers/genrich shpc-registry automated BioContainers addition for genrich Genrich
GITHUB quay.io/biocontainers/gentle singularity registry hpc automated addition for gentle GENtle, gtk-builder-tool, gtk-encode-symbolic-svg, gtk-launch, gtk-query-immodules-3.0, gtk-query-settings, ibd2sdi, innochecksum, myisam_ftdump, myisamchk, myisamlog, myisampack, mysql, mysql.server, mysql_config_editor, mysql_migrate_keyring, mysql_secure_installation, mysql_ssl_rsa_setup, mysql_tzinfo_to_sql, mysql_upgrade, mysqladmin, mysqlbinlog, mysqlcheck, mysqld, mysqld_multi, mysqld_safe, mysqldump, mysqldumpslow, mysqlimport, mysqlpump, mysqlshow, mysqlslap, protoc-23.4.0, wayland-scanner, wx-config, wxrc, wxrc-3.2, zlib_decompress, xkbcli, my_print_defaults, mysql_config, perror, hb-info, cups-config, ippeveprinter, ipptool, rsvg-convert, tjbench, gtk-update-icon-cache, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, protoc, gst-device-monitor-1.0, gst-discoverer-1.0, gst-play-1.0, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, gst-inspect-1.0
GITHUB quay.io/biocontainers/genview singularity registry hpc automated addition for genview genview-makedb, genview-visualize, time, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div, cd-hit-div.pl, cd-hit-est-2d, cd-hit-para.pl, clstr2tree.pl, clstr2txt.pl, clstr2xml.pl, clstr_cut.pl, clstr_merge.pl, clstr_merge_noorder.pl, clstr_quality_eval.pl, clstr_quality_eval_by_link.pl, clstr_reduce.pl, clstr_renumber.pl, clstr_rep.pl, clstr_reps_faa_rev.pl, clstr_rev.pl
GITHUB quay.io/biocontainers/geodl shpc-registry automated BioContainers addition for geodl geoDL, xslt-config, xsltproc, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6
GITHUB quay.io/biocontainers/geofetch singularity registry hpc automated addition for geofetch f2py3.11, geofetch, markdown-it, sraconvert, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, coloredlogs, humanfriendly, py.test, pytest, jsonschema, pygmentize, normalizer, python3.1
GITHUB quay.io/biocontainers/geosketch shpc-registry automated BioContainers addition for geosketch f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config
GITHUB quay.io/biocontainers/gepard shpc-registry automated BioContainers addition for gepard gepard, gepardcmd, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs
GITHUB quay.io/biocontainers/gerp shpc-registry automated BioContainers addition for gerp gerpcol, gerpelem
GITHUB quay.io/biocontainers/get_fasta_info singularity registry hpc automated addition for get_fasta_info get_fasta_info, get_fastq_info
GITHUB quay.io/biocontainers/get_homologues singularity registry hpc automated addition for get_homologues CHANGES.txt, COGcognitor, COGlse, COGmakehash, COGreadblast, COGtriangles, DrawGram.jar, DrawTree.jar, LICENSE.txt, add_pancore_matrices.pl, add_pangenome_matrices.pl, annotate_cluster.pl, check_BDBHs.pl, clique, compare_clusters.pl, consense, contml, contrast, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, dollop, dolmove, dolpenny, download_genomes_ncbi.pl, drawgram, drawgram_gui, drawtree, drawtree_gui, fitch, gendist, get_homologues-est.pl, get_homologues.pl, hcluster_pangenome_matrix.sh, install.pl, kitsch, make_nr_pangenome_matrix.pl, mix, move, neighbor, pars, parse_pangenome_matrix.pl, penny, pfam_enrich.pl, phylip, plot_matrix_heatmap.sh, plot_pancore_matrix.pl, proml, promlk, protdist, protpars, restdist, restml, retree, seqboot, transcripts2cds.pl, transcripts2cdsCPP.pl, treedist, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray, mcxassemble, mcxdeblast, mcxdump, mcxi, mcxload, mcxmap, mcxrand, mcxsubs, jpackage, diamond, factor, cups-config, ippeveprinter, ipptool, bdf2gdfont.pl, edirect.py
GITHUB quay.io/biocontainers/get_mnv singularity registry hpc automated addition for get_mnv get_mnv, annot-tsv, htsfile, bgzip, tabix
GITHUB quay.io/biocontainers/get_orfs singularity registry hpc automated addition for get_orfs get_orfs
GITHUB quay.io/biocontainers/getorganelle shpc-registry automated BioContainers addition for getorganelle check_annotations.py, cook_coding_for_blast.py, disentangle_organelle_assembly.py, evaluate_assembly_using_mapping.py, fastg_to_gfa.py, get_organelle_config.py, get_organelle_from_assembly.py, get_organelle_from_reads.py, get_pair_reads.py, gfa_to_fasta.py, gfa_to_fastg.py, isympy, join_spades_fastg_by_blast.py, make_batch_for_get_organelle.py, make_batch_for_iteratively_mapping_assembling.py, plastome_arch_info.py, reconstruct_graph_from_fasta.py, rm_low_coverage_duplicated_contigs.py, round_statistics.py, slim_graph.py, summary_get_organelle_output.py, cds-mapping-stats, cds-subgraphs, mag-improve, spades-convert-bin-to-fasta, spades-gsimplifier, spades-kmer-estimating, spades-read-filter, spaligner, spades-bwa, spades-core
GITHUB quay.io/biocontainers/gevent shpc-registry automated BioContainers addition for gevent easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5
GITHUB quay.io/biocontainers/gfa1 singularity registry hpc automated addition for gfa1 falcon2gfa, fastg2gfa, gfaview, mag2gfa, supernova2gfa
GITHUB quay.io/biocontainers/gfaffix shpc-registry automated BioContainers addition for gfaffix gfaffix
GITHUB quay.io/biocontainers/gfainject singularity registry hpc automated addition for gfainject gfainject
GITHUB quay.io/biocontainers/gfapy shpc-registry automated BioContainers addition for gfapy gfapy-convert, gfapy-mergelinear, gfapy-renumber, gfapy-validate, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config
GITHUB quay.io/biocontainers/gfastats shpc-registry automated BioContainers addition for gfastats gfastats
GITHUB quay.io/biocontainers/gfatools shpc-registry automated BioContainers addition for gfatools gfatools, paf2gfa
GITHUB quay.io/biocontainers/gff2bed singularity registry hpc automated addition for gff2bed 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1
GITHUB quay.io/biocontainers/gff3sort shpc-registry automated BioContainers addition for gff3sort check-disorder.pl, gff3sort.pl, findrule, perl5.26.2, podselect
GITHUB quay.io/biocontainers/gff3toddbj shpc-registry automated BioContainers addition for gff3toddbj compare-ddbj, genbank-to-ddbj, gff3-to-ddbj, list-products, normalize-entry-names, split-fasta, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py
GITHUB quay.io/biocontainers/gff3toembl shpc-registry automated BioContainers addition for gff3toembl genometools-config, gff3_to_embl, gt, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv
GITHUB quay.io/biocontainers/gffcompare shpc-registry automated BioContainers addition for gffcompare gffcompare, gtest, threads
GITHUB quay.io/biocontainers/gfflu singularity registry hpc automated addition for gfflu blastn_vdb, gfflu, miniprot, tblastn_vdb, markdown-it, uuid, uuid-config, test_pcre, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py, bed_count_overlapping.py, bed_coverage.py, bed_coverage_by_interval.py, bed_diff_basewise_summary.py, bed_extend_to.py, bed_intersect.py, bed_intersect_basewise.py, bed_merge_overlapping.py, bed_rand_intersect.py, bed_subtract_basewise.py, bnMapper.py
GITHUB quay.io/biocontainers/gffmunger shpc-registry automated BioContainers addition for gffmunger genometools-config, gffmunger, gt, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, faidx, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7
GITHUB quay.io/biocontainers/gffpandas singularity registry hpc automated addition for gffpandas 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config
GITHUB quay.io/biocontainers/gffread shpc-registry automated BioContainers addition for gffread gffread
GITHUB quay.io/biocontainers/gfftk singularity registry hpc automated addition for gfftk gfftk, table2asn, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, natsort
GITHUB quay.io/biocontainers/gffutils shpc-registry automated BioContainers addition for gffutils gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, faidx, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config
GITHUB quay.io/biocontainers/gfinisher shpc-registry automated BioContainers addition for gfinisher gfinisher, easy_install-2.7, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj
GITHUB quay.io/biocontainers/gfmix singularity registry hpc automated addition for gfmix alpha_est_mix_rt, gfmix, rert, treecns
GITHUB quay.io/biocontainers/gfold shpc-registry automated BioContainers addition for gfold gfold
GITHUB quay.io/biocontainers/gfviewer singularity registry hpc automated addition for gfviewer gfviewer, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, chardetect, fonttools, pyftmerge, pyftsubset, ttx, brotli, tjbench, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, opj_compress, opj_decompress, opj_dump
GITHUB quay.io/biocontainers/ggcaller shpc-registry automated BioContainers addition for ggcaller Bifrost, ggcaller, rapidnj, torchrun, snp-sites, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, gffutils-cli, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit
GITHUB quay.io/biocontainers/ggcat singularity registry hpc automated addition for ggcat ggcat
GITHUB quay.io/biocontainers/ggd shpc-registry automated BioContainers addition for ggd bsdcat, bsdcpio, bsdtar, check-sort-order, conda-build, conda-convert, conda-debug, conda-develop, conda-index, conda-inspect, conda-metapackage, conda-render, conda-skeleton, ggd, gsort, patchelf, pkginfo, rg, conda-env, cph, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, cyvcf2
GITHUB quay.io/biocontainers/gget singularity registry hpc automated addition for gget attr, balsam, esdcompat, getfattr, gget, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, jupyter-console, jupyter-qtconsole, lprodump, lrelease-pro, lupdate-pro, meshdebug, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, qtpy, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, jupyter-execute, flac, jupyter-dejavu, metaflac, send2trash, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, xml2-config.bak, pandoc-server, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run
GITHUB quay.io/biocontainers/ggplot shpc-registry automated BioContainers addition for ggplot easy_install-3.6, qhelpconverter, pylupdate5, pyrcc5, pyuic5, sip, qdoc, gst-device-monitor-1.0, gst-discoverer-1.0, gst-play-1.0
GITHUB quay.io/biocontainers/ghm shpc-registry automated BioContainers addition for ghm ghm
GITHUB quay.io/biocontainers/ghmm shpc-registry automated BioContainers addition for ghmm ccache-swig, ghmm-config, probdist, scluster, smix_hmm, swig, cluster, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, perl5.32.1, streamzip
GITHUB quay.io/biocontainers/ghost-tree shpc-registry automated BioContainers addition for ghost-tree
GITHUB quay.io/biocontainers/ghostscript shpc-registry automated BioContainers addition for ghostscript font2c, wftopfa, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500, gslj, gslp, gsnd, lprsetup.sh
GITHUB