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GITHUB
|
adminer |
Database management in a single PHP file. |
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GITHUB
|
amazon/aws-cli |
The AWS Command Line Interface (AWS CLI) is a unified tool to manage your AWS services. |
aws, aws_completer |
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GITHUB
|
amdih/cp2k |
CP2K is a quantum chemistry and solid state physics software package that can perform atomistic simulations of solid state, liquid, molecular, periodic, material, crystal, and biological systems. |
cp2k.popt, cp2k.psmp.dbcsr_gpu, cp2k_shell.psmp, graph.psmp, grid_unittest.psmp, memory_utilities_unittest.psmp, xyz2dcd.psmp, cp2k.psmp, cp2k.psmp.no_dbcsr_gpu, dumpdcd.psmp, grid_miniapp.psmp, libcp2k_unittest.psmp, parallel_rng_types_unittest.psmp |
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GITHUB
|
amdih/gromacs |
GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. |
gmx |
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GITHUB
|
amdih/lammps |
LAMMPS is a classical molecular dynamics code with a focus on materials modeling. It's an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. |
lmp |
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GITHUB
|
amdih/namd |
NAMD is a molecular dynamics package designed for simulating the movement of biomolecules over time. |
charmrun, namd2 |
|
GITHUB
|
amdih/namd3 |
NAMD is a molecular dynamics package designed for simulating the movement of biomolecules over time. |
charmrun, namd3 |
|
GITHUB
|
amdih/pytorch |
PyTorch is a GPU accelerated tensor computational framework with a Python front end. |
python3, python |
|
GITHUB
|
bids/aa |
BIDS App containing an instance of the Automatic Analysis. (https://github.com/BIDS-Apps/aa) |
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GITHUB
|
bids/baracus |
Brain-Age Regression Analysis and Computation Utility Software (https://github.com/BIDS-Apps/baracus) |
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GITHUB
|
bids/brainiak-srm |
Shared Response Model (SRM) from the Brain Imaging Analysis Kit (BrainIAK) (https://github.com/BIDS-Apps/brainiak-srm) |
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GITHUB
|
bids/brainsautoworkup |
A BIDS App for running BRAINSAutoWorkup (https://github.com/BIDS-Apps/BRAINSAutoworkup) |
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GITHUB
|
bids/broccoli |
BROCCOLI is a software for analysis of fMRI (functional magnetic resonance imaging) data and is written in OpenCL (Open Computing Language). (https://github.com/BIDS-Apps/BROCCOLI) |
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GITHUB
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bids/freesurfer |
Surface reconstruction using Freesurfer |
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GITHUB
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bids/hcppipelines |
BIDS-ified HPC Piplines to process MRI data for the Human Connectome Project (https://github.com/BIDS-Apps/HCPPipelines) |
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GITHUB
|
bids/matlab-compiler-runtime |
Base image with Matlab compiler runtime (https://github.com/BIDS-Apps/matlab-compiler-runtime) |
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GITHUB
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bids/mrtrix3_connectome |
Generation and subsequent group analysis of structural connectomes generated from diffusion MRI data (via the MRtrix3 software package). https://github.com/BIDS-Apps/MRtrix3_connectome |
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GITHUB
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bids/niak |
The neuroimaging analysis kit. Pipeline for preprocessing of fMRI and structural MRI scans http://niak.simexp-lab.org/ (https://github.com/BIDS-Apps/niak) |
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GITHUB
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bids/pymvpa |
Take fMRI data and generates ROI based MultiVariate Pattern Analysis (MVPA) outputs (https://github.com/BIDS-Apps/PyMVPA) |
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GITHUB
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bids/rshrf |
Resting state HRF estimation and deconvolution (https://github.com/BIDS-Apps/rsHRF) |
rsHRF |
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GITHUB
|
bids/spm |
The implementation of the theoretical concepts of Statistical Parametric Mapping in a complete analysis package. |
spm12 |
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GITHUB
|
bids/tracula |
Implements Freesurfer's TRACULA (TRActs Constrained by UnderLying Anatomy) tool for cross-sectional as well as longitudinal (multi session) input data (https://github.com/BIDS-Apps/tracula) |
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GITHUB
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bids/validator |
A validator for BIDS (Brain Imaging Data Structure) datasets. |
bids-validator |
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GITHUB
|
couchdb |
CouchDB is a database that uses JSON for documents, an HTTP API, & JavaScript/declarative indexing. |
couchdb, couchdb.cmd, couchjs, remsh |
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GITHUB
|
elasticsearch |
Elasticsearch is a powerful open source search and analytics engine that makes data easy to explore. |
elasticsearch, elasticsearch-certgen, elasticsearch-certutil, elasticsearch-cli, elasticsearch-croneval, elasticsearch-env, elasticsearch-env-from-file, elasticsearch-keystore, elasticsearch-migrate, elasticsearch-node, elasticsearch-plugin, elasticsearch-saml-metadata, elasticsearch-setup-passwords, elasticsearch-shard, elasticsearch-sql-cli, elasticsearch-sql-cli-7.12.0.jar, elasticsearch-syskeygen, elasticsearch-users |
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GITHUB
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ghcr.io/autamus/abi-dumper |
ABI Dumper is a tool for dumping ABI information of an ELF object containing DWARF debug info. |
abi-dumper |
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GITHUB
|
ghcr.io/autamus/abyss |
ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads. |
abyss-align, abyss-bloom, abyss-bloom-dbg, abyss-bloom-dist.mk, abyss-bowtie, abyss-bowtie2, abyss-bwa, abyss-bwamem, abyss-bwasw, abyss-db-csv, abyss-db-txt, abyss-dida, abyss-fac, abyss-fatoagp, abyss-filtergraph, abyss-fixmate, abyss-fixmate-ssq, abyss-gapfill, abyss-gc, abyss-index, abyss-junction, abyss-kaligner, abyss-layout, abyss-longseqdist, abyss-map, abyss-map-ssq, abyss-mergepairs, abyss-overlap, abyss-paired-dbg, abyss-paired-dbg-mpi, abyss-pe, abyss-samtoafg, abyss-scaffold, abyss-sealer, abyss-stack-size, abyss-tabtomd, abyss-todot, abyss-tofastq |
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GITHUB
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ghcr.io/autamus/accumulo |
Apache Accumulo is a sorted, distributed key/value store that provides robust, scalable data storage and retrieval. |
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GITHUB
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ghcr.io/autamus/addrwatch |
addrwatch is a similar software to arpwatch. It main purpose is to monitor network and log ethernet/ip pairings. |
addrwatch, addrwatch_stdout, addrwatch_syslog |
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GITHUB
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ghcr.io/autamus/adios |
The Adaptable IO System (ADIOS) provides a simple, flexible way for scientists to describe the data in their code that may need to be written, read, or processed outside of the running simulation. |
adios_config, adios_lint, adios_list_methods, adios_list_methods_nompi, adios_list_methods_readonly, adios_list_methods_readonly_nompi |
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GITHUB
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ghcr.io/autamus/adios2 |
The Adaptable Input Output System version 2, developed in the Exascale Computing Program |
adios2-config, adios2_deactivate_bp, adios2_iotest, adios2_reorganize, adios2_reorganize_mpi |
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GITHUB
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ghcr.io/autamus/admixtools |
ADMIXTOOLS is a collection of programs which use genetic data to infer how populations are related to one another. |
convertf, dowtjack, expfit.sh, gcount, grabpars, gsl-config, gsl-histogram, gsl-randist, jackdiff, kimf, mergeit, mkpretty, qp3Pop, qp4diff, qpAdm, qpBound, qpDpart, qpDstat, qpF4ratio, qpGraph, qpWave, qpdslow, qpff3base, qpfmv, qpfstats, qpreroot, rexpfit.r, rolloff, rolloffp, simpjack2, twtable, wtjack.pl |
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GITHUB
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ghcr.io/autamus/advancecomp |
AdvanceCOMP is a set of cross-platform command line data (re-)compression tools. |
advdef, advmng, advpng, advzip |
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GITHUB
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ghcr.io/autamus/alan |
A simple in-terminal alignment viewer. |
alan |
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GITHUB
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ghcr.io/autamus/alps |
Algorithms and Libraries for Physics Simulations. |
alpspython |
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GITHUB
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ghcr.io/autamus/amrex |
AMReX is a publicly available software framework designed for building massively parallel block- structured adaptive mesh refinement (AMR) applications. |
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GITHUB
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ghcr.io/autamus/angsd |
ANGSD is a software for analyzing next generation sequencing data. |
angsd |
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GITHUB
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ghcr.io/autamus/arborx |
ArborX is a performance-portable library for geometric search |
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GITHUB
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ghcr.io/autamus/argobots |
A lightweight runtime system that supports integrated computation and data movement with massive concurrency. |
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GITHUB
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ghcr.io/autamus/aria2 |
aria2 is a lightweight multi-protocol & multi-source command-line download utility. |
aria2c |
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GITHUB
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ghcr.io/autamus/ascent |
An open source many-core capable lightweight in situ visualization and analysis infrastructure for multi-physics HPC simulations. |
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GITHUB
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ghcr.io/autamus/astral |
ASTRAL is a tool for estimating an unrooted species tree given a set of unrooted gene trees. |
astral |
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GITHUB
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ghcr.io/autamus/bart |
BART: Toolbox for Computational Magnetic Resonance Imaging |
bart, bartview |
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GITHUB
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ghcr.io/autamus/bbmap |
A suite of fast, multithreaded bioinformatics tools designed for analysis of DNA and RNA sequence data. |
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GITHUB
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ghcr.io/autamus/bcftools |
BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. |
bcftools |
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GITHUB
|
ghcr.io/autamus/beast2 |
BEAST 2 is a cross-platform program for Bayesian phylogenetic analysis of molecular sequences. |
beast, beasti, beauti, densitree, treeannotator |
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GITHUB
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ghcr.io/autamus/bedops |
BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. |
bam2bed, bam2bed_gnuParallel, bam2bed_sge, bam2bed_slurm, bam2starch, bam2starch_gnuParallel, bam2starch_sge, bam2starch_slurm, bedextract, bedmap, bedops, closest-features, convert2bed, gff2bed, gff2starch, gtf2bed, gtf2starch, gvf2bed, gvf2starch, psl2bed, psl2starch, rmsk2bed, rmsk2starch, sam2bed, sam2starch, sort-bed, starch, starch-diff, starchcat, starchcluster_gnuParallel, starchcluster_sge, starchcluster_slurm, starchstrip, unstarch, update-sort-bed-migrate-candidates, update-sort-bed-slurm, update-sort-bed-starch-slurm, vcf2bed, vcf2starch, wig2bed, wig2starch |
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GITHUB
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ghcr.io/autamus/bedtools2 |
The swiss army knife for genome arithmetic |
annotateBed, bamToBed, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, fastaFromBed, flankBed, genomeCoverageBed, intersectBed, linksBed, mapBed, maskFastaFromBed, mergeBed, multiIntersectBed, nucBed, pairToBed, randomBed, shiftBed, shuffleBed, slopBed, sortBed, subtractBed, unionBedGraphs, windowBed |
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GITHUB
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ghcr.io/autamus/bismark |
Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step. |
bismark, bismark_genome_preparation, bismark_methylation_extractor, bismark2bedGraph, bismark2report, bismark2summary |
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GITHUB
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ghcr.io/autamus/bolt |
BOLT targets a high-performing OpenMP implementation, especially specialized for fine-grain parallelism. |
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GITHUB
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ghcr.io/autamus/boost |
The Boost project provides free peer-reviewed portable C++ source libraries. |
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GITHUB
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ghcr.io/autamus/bowtie2 |
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. |
bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s |
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GITHUB
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ghcr.io/autamus/bracken |
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample. |
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GITHUB
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ghcr.io/autamus/bwa |
BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. |
bwa |
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GITHUB
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ghcr.io/autamus/cabana |
The Exascale Co-Design Center for Particle Applications Toolkit |
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GITHUB
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ghcr.io/autamus/caliper |
Caliper is a program instrumentation and performance measurement framework. |
cali-query, cali-stat |
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GITHUB
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ghcr.io/autamus/cantera |
Cantera is an open-source collection of object-oriented software tools for problems involving chemical kinetics, thermodynamics, and transport processes. |
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GITHUB
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ghcr.io/autamus/cctools |
The Cooperative Computing Tools (CCTools) are a collection of programs that enable large scale distributed computing on systems such as clusters, clouds, and grids. |
c_rehash, captoinfo, catalog_query, catalog_server, catalog_update, ccache-swig, cctools_gpu_autodetect, chirp, chirp_audit_cluster, chirp_benchmark, chirp_distribute, chirp_fuse, chirp_get, chirp_put, chirp_server, chirp_server_hdfs, chirp_status, chirp_stream_files, chroot_package_run, clear, condor_submit_makeflow, condor_submit_workers, confuga_adm, corelist, cpan, cpanm |
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GITHUB
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ghcr.io/autamus/cdo |
CDO is a collection of command line Operators to manipulate and analyse Climate and NWP model Data. |
cdo |
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GITHUB
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ghcr.io/autamus/cfitsio |
CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format. |
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GITHUB
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ghcr.io/autamus/circos |
Circos is a software package for visualizing data and information. |
circos |
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GITHUB
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ghcr.io/autamus/clhep |
CLHEP is a C++ library that provides utility classes for general numerical programming, vector arithmetic, geometry, pseudorandom number generation, and linear algebra, specifically targeted for high energy physics simulation and analysis software. |
Cast-config, Evaluator-config, Exceptions-config, GenericFunctions-config, Geometry-config, Matrix-config, Random-config, RandomObjects-config, RefCount-config, Units-config, Utility-config, Vector-config, clhep-config |
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GITHUB
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ghcr.io/autamus/clingo |
An ASP system to ground and solve logic programs. |
clingo, gringo |
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GITHUB
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ghcr.io/autamus/cloc |
cloc is a command line program that takes file, directory, and/or archive names as inputs. |
cloc |
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GITHUB
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ghcr.io/autamus/conduit |
Conduit is an open source project from Lawrence Livermore National Laboratory that provides an intuitive model for describing hierarchical scientific data in C++, C, Fortran, and Python. |
conduit_blueprint_verify, conduit_relay_entangle.py, conduit_relay_io_convert, conduit_relay_io_ls, conduit_relay_node_viewer, conduit_staging, conduit_staging.sh |
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GITHUB
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ghcr.io/autamus/corset |
Corset is a command-line program to go from a de novo transcriptome assembly to gene-level counts. |
corset, corset_fasta_ID_changer |
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GITHUB
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ghcr.io/autamus/cowsay |
What does the cow say? |
cowsay |
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GITHUB
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ghcr.io/autamus/cufflinks |
Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. |
cuffcompare, cuffdiff, cufflinks, cuffmerge, cuffnorm, cuffquant |
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GITHUB
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ghcr.io/autamus/curl |
cURL is a computer software project providing a library and command-line tool for transferring data using various network protocols. The name stands for 'Client URL', which was first released in 1997. |
c_rehash, curl, curl-config |
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GITHUB
|
ghcr.io/autamus/dakota |
The Dakota project delivers both state-of-the-art research and robust, usable software for optimization and UQ. Broadly, the Dakota software's advanced parametric analyses enable design exploration, model calibration, risk analysis, and quantification of margins and uncertainty with computational models. |
dakota, dakota_library_mode, dakota_library_split, dakota_order_input, dakota_restart_util |
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GITHUB
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ghcr.io/autamus/datatransferkit |
DataTransferKit is an open-source software library of parallel solution transfer services for multiphysics simulations |
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GITHUB
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ghcr.io/autamus/diamond |
A sequence aligner for protein and translated DNA searches, designed for high performance analysis of big sequence data. |
diamond |
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GITHUB
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ghcr.io/autamus/dyninst |
DyninstAPI - Tools for binary instrumentation, analysis, and modification. |
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GITHUB
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ghcr.io/autamus/eagle |
Explicit Alternative Genome Likelihood Evaluator |
eagle, eagle-nm, eagle-rc |
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GITHUB
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ghcr.io/autamus/ed |
GNU ed is a line-oriented text editor used to create, display, modify and otherwise manipulate text files, both interactively and via shell scripts https://www.gnu.org/software/ed. |
ed, red |
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GITHUB
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ghcr.io/autamus/emacs |
The Emacs programmable text editor. https://www.gnu.org/software/emacs |
ebrowse, emacs, emacsclient, etags |
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GITHUB
|
ghcr.io/autamus/faodel |
Flexible, Asynchronous, Object Data-Exchange Libraries |
faodel |
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GITHUB
|
ghcr.io/autamus/fastqc |
A quality control tool for high throughput sequence data. |
fastqc |
|
GITHUB
|
ghcr.io/autamus/ffmpeg |
FFmpeg is a free and open-source software project consisting of a large suite of libraries and programs for handling video, audio, and other multimedia files and streams. |
ffmpeg, ffprobe |
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GITHUB
|
ghcr.io/autamus/flit |
Floating-point Litmus Tests (FLiT) is a C++ test infrastructure for detecting variability in floating-point code caused by variations in compiler code generation, hardware and execution environments. |
flit |
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GITHUB
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ghcr.io/autamus/fraggenescan |
An application for finding (fragmented) genes in short reads. |
|
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GITHUB
|
ghcr.io/autamus/gasnet |
GASNet is a language-independent, networking middleware layer that provides network-independent, high-performance communication primitives including Remote Memory Access (RMA) and Active Messages (AM). |
gasnet_trace, gasnet_trace.pl |
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GITHUB
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ghcr.io/autamus/gatk |
GATK (pronounced 'Gee-ay-tee-kay', not 'Gat-kay'), stands for GenomeAnalysisToolkit. It is a collection of command-line tools for analyzing high-throughput sequencing data with a primary focus on variant discovery. |
gatk |
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GITHUB
|
ghcr.io/autamus/gawk |
gawk is the GNU implementation of awk. The awk utility interprets a special-purpose programming language that makes it possible to handle simple data-reformatting jobs with just a few lines of code. https://www.gnu.org/software/gawk/ |
gawk |
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GITHUB
|
ghcr.io/autamus/gcc |
The GNU Compiler Collection |
c++, cpp, g++, gcc, gcc-ar, gcc-nm, gcc-ranlib, gcov, gcov-dump, gcov-tool, gfortran, zstd |
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GITHUB
|
ghcr.io/autamus/gdal |
GDAL is a translator library for raster and vector geospatial data formats that is released under an X/MIT style Open Source License by the Open Source Geospatial Foundation. |
gdal-config, gdal_contour, gdal_create, gdal_grid, gdal_rasterize, gdal_translate, gdal_viewshed, gdaladdo, gdalbuildvrt, gdaldem, gdalenhance, gdalinfo, gdallocationinfo, gdalmanage, gdalmdiminfo, gdalmdimtranslate, gdalsrsinfo, gdaltindex, gdaltransform, gdalwarp |
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GITHUB
|
ghcr.io/autamus/geant4 |
Geant4 is a platform for the simulation of the passage of particles through matter using Monte Carlo methods. |
Cast-config, CreateDOMDocument, DOMCount, DOMPrint, EnumVal, Evaluator-config, Exceptions-config, GenericFunctions-config, Geometry-config, Matrix-config, MemParse, PParse, PSVIWriter, Random-config, RandomObjects-config, Redirect, RefCount-config, SAX2Count, SAX2Print, SAXCount, SAXPrint, SCMPrint, SEnumVal, StdInParse, Units-config, Utility-config, Vector-config, XInclude, geant4-config, geant4.csh, geant4.sh |
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GITHUB
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ghcr.io/autamus/geos |
GEOS is a C++11 library for performing operations on two-dimensional vector geometries. |
geos-config |
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GITHUB
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ghcr.io/autamus/ginkgo |
High-performance linear algebra library for manycore systems, with a focus on sparse solution of linear systems. |
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GITHUB
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ghcr.io/autamus/git |
Git is software for tracking changes in any set of files, usually used for coordinating work among programmers collaboratively developing source code during software development. Its goals include speed, data integrity, and support for distributed, non-linear workflows. |
git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack |
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GITHUB
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ghcr.io/autamus/glpk |
The GLPK package is a set of routines written in ANSI C and organized in the form of a callable library. This package is intended for solving large-scale linear programming (LP), mixed integer linear programming (MIP), and other related problems. |
glpsol |
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GITHUB
|
ghcr.io/autamus/gmp |
GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating-point numbers. |
curl |
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GITHUB
|
ghcr.io/autamus/gnuplot |
Gnuplot is a portable command-line driven graphing utility for Linux, OS/2, MS Windows, OSX, VMS, and many other platforms. |
gnuplot |
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GITHUB
|
ghcr.io/autamus/gotcha |
C software library for shared library function wrapping, enables tools to intercept calls into shared libraries |
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GITHUB
|
ghcr.io/autamus/graphviz |
Graphviz is open source graph visualization software. |
gc, gml2gv, graphml2gv, gv2gml, gv2gxl, gvcolor, gvgen, gvmap, gvmap.sh, gvpack, gvpr, gxl2dot, gxl2gv |
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GITHUB
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ghcr.io/autamus/grass |
GRASS GIS (https://grass.osgeo.org/) is a Geographic Information System used for geospatial data management and analysis, image processing, graphics/map production, spatial modeling, and visualization. |
grass78 |
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GITHUB
|
ghcr.io/autamus/gromacs |
A versatile package to perform molecular dynamics. |
|
|
GITHUB
|
ghcr.io/autamus/gsl |
The GNU Scientific Library. |
gsl-config, gsl-histogram, gsl-randist |
|
GITHUB
|
ghcr.io/autamus/hdf5 |
HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections. |
h5clear, h5copy, h5debug, h5diff, h5dump, h5format_convert, h5import, h5jam, h5ls, h5mkgrp, h5pcc, h5perf, h5perf_serial, h5redeploy, h5repack, h5repart, h5stat, h5unjam |
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GITHUB
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ghcr.io/autamus/heaptrack |
Heaptrack traces all memory allocations and annotates these events with stack traces. |
heaptrack, heaptrack_print |
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GITHUB
|
ghcr.io/autamus/hisat2 |
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes as well as to a single reference genome. |
hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, hisatgenotype.py, hisatgenotype_build_genome.py, hisatgenotype_extract_reads.py, hisatgenotype_extract_vars.py, hisatgenotype_hla_cyp.py, hisatgenotype_locus.py |
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GITHUB
|
ghcr.io/autamus/hmmer |
HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. |
hmmalign, hmmbuild, hmmconvert, hmmemit, hmmfetch, hmmlogo, hmmpgmd, hmmpgmd_shard, hmmpress, hmmscan, hmmsearch, hmmsim, hmmstat |
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GITHUB
|
ghcr.io/autamus/hpctoolkit |
HPCToolkit is an integrated suite of tools for measurement and analysis of program performance on computers ranging from multicore desktop systems to the nation's largest supercomputers. |
hello, hpclink, hpcprof, hpcrun, hpcstruct, hpcviewer |
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GITHUB
|
ghcr.io/autamus/hpx |
C++ runtime system for parallel and distributed applications. |
hpxcxx, hpxrun.py |
|
GITHUB
|
ghcr.io/autamus/htop |
htop is an interactive text-mode process viewer for Unix systems. https://github.com/hishamhm/htop |
htop |
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GITHUB
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ghcr.io/autamus/htslib |
A C library for reading/writing high-throughput sequencing data. |
htsfile |
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GITHUB
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ghcr.io/autamus/hypre |
A library of high performance preconditioners and solvers featuring multigrid methods for the solution of large, sparse linear systems of equations on massively parallel computers. |
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GITHUB
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ghcr.io/autamus/igraph |
igraph is a library collection for creating and manipulating graphs and analyzing networks. It is written in C and also exists as Python and R packages. |
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GITHUB
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ghcr.io/autamus/intel-mkl |
Intel oneAPI Math Kernel Library, formerly just Intel Math Kernel Library, is a library of optimized math routines for science, engineering, and financial applications. |
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GITHUB
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ghcr.io/autamus/ior |
IOR is a parallel IO benchmark that can be used to test the performance of parallel storage systems using various interfaces and access patterns. |
ior |
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GITHUB
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ghcr.io/autamus/iq-tree |
IQ-TREE (http://www.iqtree.org, last accessed February 6, 2020) is a user-friendly and widely used software package for phylogenetic inference using maximum likelihood. |
iq-tree2 |
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GITHUB
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ghcr.io/autamus/jags |
Just Another Gibbs Sampler. A program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation. |
jags |
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GITHUB
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ghcr.io/autamus/jasper |
JasPer is a collection of software (i.e., a library and application programs) for the coding and manipulation of images. |
jasper, jpegtran |
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GITHUB
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ghcr.io/autamus/julia |
Julia is a high-level, high-performance, dynamic programming language. |
julia |
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GITHUB
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ghcr.io/autamus/kallisto |
kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. |
kallisto |
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GITHUB
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ghcr.io/autamus/kraken2 |
Kraken 2 is the newest version of Kraken, a taxonomic classification system using exact k-mer matches to achieve high accuracy and fast classification speeds. |
kraken2, kraken2-build, kraken2-inspect, kraken2lib.pm |
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GITHUB
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ghcr.io/autamus/lammps |
LAMMPS is a classical molecular dynamics code with a focus on materials modeling. |
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GITHUB
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ghcr.io/autamus/legion |
Legion is a data-centric parallel programming system for writing portable high performance programs targeted at distributed heterogeneous architectures. |
legion_prof.py, legion_serializer.py, legion_spy.py |
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GITHUB
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ghcr.io/autamus/libnrm |
Libnrm, the application instrumentation library for the Node Resource Manager(NRM). |
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GITHUB
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ghcr.io/autamus/libpng |
libpng is the official PNG reference library. |
libpng-config, libpng16-config, png-fix-itxt, pngfix |
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GITHUB
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ghcr.io/autamus/libquo |
QUO (as in status quo) is a runtime library that aids in accommodating thread-level heterogeneity in dynamic, phased MPI+X applications comprising single- and multi-threaded libraries. |
quo-info |
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GITHUB
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ghcr.io/autamus/libtiff |
Libtiff is a library for reading and writing Tagged Image File Format (abbreviated TIFF) files. |
fax2tiff, ppm2tiff, raw2tiff, tiff2bw, tiff2pdf, tiff2ps, tiff2rgba, tiffcmp, tiffcp, tiffcrop, tiffdither, tiffdump, tiffinfo, tiffmedian, tiffset, tiffsplit |
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GITHUB
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ghcr.io/autamus/libunwind |
A portable and efficient C programming interface (API) to determine the call-chain of a program. |
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GITHUB
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ghcr.io/autamus/libxpm |
The X PixMap image format is an extension of the monochrome X BitMap format specified in the X protocol, and is commonly used in traditional X applications. |
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GITHUB
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ghcr.io/autamus/lmod |
The Persistence of Vision Ray Tracer, most commonly acronymed as POV-Ray, is a cross-platform ray-tracing program that generates images from a text-based scene description. |
module |
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GITHUB
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ghcr.io/autamus/loki |
Loki is a C++ library of designs, containing flexible implementations of common design patterns and idioms. |
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GITHUB
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ghcr.io/autamus/lp-solve |
Lp_solve is freely available (under LGPL 2) software for solving linear, integer and mixed integer programs. |
lp_solve |
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GITHUB
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ghcr.io/autamus/mafft |
MAFFT is a multiple sequence alignment program for unix-like operating systems. |
mafft, mafft-distance, mafft-einsi, mafft-fftns, mafft-fftnsi, mafft-ginsi, mafft-linsi, mafft-nwns, mafft-nwnsi, mafft-profile, mafft-qinsi, mafft-xinsi |
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GITHUB
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ghcr.io/autamus/meme |
The MEME suite provides online tools for discovering and using protein and DNA sequence motifs. |
meme, meme-chip, memhog |
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GITHUB
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ghcr.io/autamus/mercurial |
Mercurial is a distributed revision control tool for software developers. |
hg |
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GITHUB
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ghcr.io/autamus/mercury |
Mercury is a C library for implementing RPC, optimized for HPC |
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GITHUB
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ghcr.io/autamus/metall |
A Persistent Memory Allocator For Data-Centric Analytics |
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GITHUB
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ghcr.io/autamus/migrate |
Migrate estimates effective population sizes and past migration rates between n population assuming a migration matrix model with asymmetric migration rates and different subpopulation sizes |
migrate-n |
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GITHUB
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ghcr.io/autamus/mothur |
A single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community. |
mothur |
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GITHUB
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ghcr.io/autamus/mpc |
mithi/mpc: A software pipeline using the Model Predictive Control method to drive a car around a virtual track. |
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GITHUB
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ghcr.io/autamus/mpfr |
The MPFR library is a C library for multiple-precision floating-point computations with correct rounding. |
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GITHUB
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ghcr.io/autamus/mummer |
MUMmer is a system for rapidly aligning entire genomes. |
mummer, mummerplot |
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GITHUB
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ghcr.io/autamus/muscle |
Multiple Sequence Alignment. |
muscle |
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GITHUB
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ghcr.io/autamus/nco |
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nc-config, ncap2, ncatted, ncbo, ncclimo, nccopy, ncdiff, ncdump, ncea, ncecat, nces, ncflint, ncgen, ncgen3, ncks, ncpdq, ncra, ncrcat, ncremap, ncrename, ncurses6-config, ncursesw6-config, ncwa |
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GITHUB
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ghcr.io/autamus/ninja |
Ninja is a small build system with a focus on speed. |
ninja, ninja-build |
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GITHUB
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ghcr.io/autamus/node-js |
A JavaScript runtime built on Chrome's V8 JavaScript engine. |
node |
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GITHUB
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ghcr.io/autamus/octave |
GNU Octave is a high-level interpreted language, primarily intended for numerical computations (like an open source Matlab) |
octave, octave-6.2.0, octave-cli, octave-cli-6.2.0, octave-config, octave-config-6.2.0 |
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GITHUB
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ghcr.io/autamus/omega-h |
Omega_h is a C++11 library providing data structures and algorithms for adaptive discretizations. |
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GITHUB
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ghcr.io/autamus/openbabel |
Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas. |
obabel, obconformer, obdistgen, obenergy, obfit, obfitall, obgen, obgrep, obminimize, obmm, obprobe, obprop, obrms, obrotamer, obrotate, obspectrophore, obsym, obtautomer, obthermo |
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GITHUB
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ghcr.io/autamus/opencv |
OpenCV is a library of programming functions mainly aimed at real-time computer vision. Originally developed by Intel, it was later supported by Willow Garage then Itseez. |
opencv_version, setup_vars_opencv4.sh |
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GITHUB
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ghcr.io/autamus/openjdk |
Open Java Development Kit |
jaotc, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jdeps, jfr, jhsdb, jimage, jinfo, jjs, jlink, jmap, jmod, jps, jrunscript, jshell, jstack, jstat, jstatd |
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GITHUB
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ghcr.io/autamus/openmpi |
An open source Message Passing Interface implementation. |
mpiCC, mpic++, mpicc, mpicxx, mpiexec, mpif77, mpif90, mpifort, mpirun, ompi-clean, ompi-server, ompi_info |
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GITHUB
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ghcr.io/autamus/pandaseq |
A program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. |
pandaseq, pandaseq-checkid, pandaseq-diff, pandaseq-hang, pandaxs |
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GITHUB
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ghcr.io/autamus/papi |
Performance Application Programming Interface. |
papi_avail, papi_clockres, papi_command_line, papi_component_avail, papi_cost, papi_decode, papi_error_codes, papi_event_chooser, papi_hl_output_writer.py, papi_mem_info, papi_multiplex_cost, papi_native_avail, papi_version, papi_xml_event_info |
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GITHUB
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ghcr.io/autamus/papyrus |
Parallel Aggregate Persistent Storage |
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GITHUB
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ghcr.io/autamus/parallel-netcdf |
PnetCDF (Parallel netCDF) is a high-performance parallel I/O library for accessing files in format compatibility with Unidata's NetCDF, specifically the formats of CDF-1, 2, and 5. |
pnetcdf-config, pnetcdf_version |
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GITHUB
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ghcr.io/autamus/pdt |
Program Database Toolkit (PDT) is a framework for analyzing source code written in several programming languages and for making rich program knowledge accessible to developers of static and dynamic analysis tools. |
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GITHUB
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ghcr.io/autamus/perl |
The Perl programming language. |
perl, perlbug, perldoc, perlivp, perlthanks |
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GITHUB
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ghcr.io/autamus/petsc |
PETSc is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations. |
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GITHUB
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ghcr.io/autamus/phist |
The Pipelined, Hybrid-parallel Iterative Solver Toolkit provides implementations of and interfaces to block iterative solvers for sparse linear and eigenvalue problems. |
phist_Danasazi_krylov_schur, phist_Danasazi_lobpcg, phist_Dbelos_bgmres, phist_Dbelos_bpcg, phist_Dblockedbicgstab, phist_Dblockedgmres, phist_Dblockedpcg, phist_Dsimple_lanczos, phist_Dsubspacejada, phist_carp_cg |
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GITHUB
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ghcr.io/autamus/picard |
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. |
picard, picard.jar |
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GITHUB
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ghcr.io/autamus/plasma |
Parallel Linear Algebra Software for Multicore Architectures, PLASMA is a software package for solving problems in dense linear algebra using multicore processors and Xeon Phi coprocessors. |
plasmatest |
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GITHUB
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ghcr.io/autamus/plink |
PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. |
plink |
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GITHUB
|
ghcr.io/autamus/poppler |
Poppler is a free software utility library for rendering Portable Document Format (PDF) documents. |
pdfattach, pdfdetach, pdffonts, pdfimages, pdfinfo, pdfseparate, pdftohtml, pdftops, pdftotext, pdfunite, png-fix-itxt, pngfix |
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GITHUB
|
ghcr.io/autamus/povray |
The Persistence of Vision Ray Tracer, most commonly acronymed as POV-Ray, is a cross-platform ray-tracing program that generates images from a text-based scene description. |
povray |
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GITHUB
|
ghcr.io/autamus/precice |
preCICE (Precise Code Interaction Coupling Environment) is a coupling library for partitioned multi-physics simulations. |
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GITHUB
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ghcr.io/autamus/prodigal |
Prodigal Gene Prediction Software |
prodigal |
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GITHUB
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ghcr.io/autamus/proj |
PROJ is a generic coordinate transformation software, that transforms coordinates from one coordinate reference system (CRS) to another. |
proj, projinfo, projsync |
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GITHUB
|
ghcr.io/autamus/protobuf |
Protocol Buffers is a method of serializing structured data. It is useful in developing programs to communicate with each other over a network or for storing data. |
protoc, protoc-3.15.8.0 |
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GITHUB
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ghcr.io/autamus/pumi |
SCOREC RPI's Parallel Unstructured Mesh Infrastructure (PUMI). |
print_pumipic_partition |
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GITHUB
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ghcr.io/autamus/py-libensemble |
Library for managing ensemble-like collections of computations. |
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GITHUB
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ghcr.io/autamus/py-petsc4py |
This package provides Python bindings for the PETSc package. |
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GITHUB
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ghcr.io/autamus/python |
An interpreted, high-level and general-purpose programming language. |
pydoc3, pydoc3.8, python, python-config, python3, python3-config, python3.8, python3.8-config, python3.8-gdb.py |
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GITHUB
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ghcr.io/autamus/qhull |
Snappy (previously known as Zippy) is a fast data compression and decompression library written in C++ by Google based on ideas from LZ77 and open-sourced in 2011. |
qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox |
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GITHUB
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ghcr.io/autamus/r-seqlogo |
Sequence logos for DNA sequence alignments |
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GITHUB
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ghcr.io/autamus/r |
R is a language and environment for statistical computing and graphics. |
R |
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GITHUB
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ghcr.io/autamus/raxml |
RAxML (Randomized Axelerated Maximum Likelihood) is a popular program for phylogenetic analysis of large datasets under maximum likelihood. |
raxmlHPC, raxmlHPC-AVX, raxmlHPC-MPI, raxmlHPC-MPI-AVX, raxmlHPC-MPI-SSE3, raxmlHPC-SSE3 |
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GITHUB
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ghcr.io/autamus/rclone |
Rclone is a command line program to manage files on cloud storage. |
rclone |
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GITHUB
|
ghcr.io/autamus/rempi |
ReMPI is a record-and-replay tool for MPI applications. |
rempi, rempi_record, rempi_replay, reset |
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GITHUB
|
ghcr.io/autamus/rsync |
An open source utility that provides fast incremental file transfer. https://rsync.samba.org/ |
rsync, rsync-ssl |
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GITHUB
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ghcr.io/autamus/ruby |
An interpreted, high-level, general-purpose programming language. |
bundle, bundler, erb, gem, irb, racc, rake, rbs, rdoc, ri, ruby |
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GITHUB
|
ghcr.io/autamus/rust |
Rust is a multi-paradigm programming language designed for performance and safety, especially safe concurrency. |
cargo, cargo-clippy, cargo-fmt, clippy-driver, rust, rust-gdb, rust-gdbgui, rust-lldb, rustc, rustdoc, rustfmt |
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GITHUB
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ghcr.io/autamus/salmon |
Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data. |
salmon |
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GITHUB
|
ghcr.io/autamus/samtools |
Samtools is a suite of programs for interacting with high-throughput sequencing data. |
blast2sam.pl, bowtie2sam.pl, export2sam.pl, fasta-sanitize.pl, interpolate_sam.pl, novo2sam.pl, psl2sam.pl, sam2vcf.pl, samtools, samtools.pl, seq_cache_populate.pl, soap2sam.pl, wgsim_eval.pl, zoom2sam.pl |
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GITHUB
|
ghcr.io/autamus/scons |
SCons is an Open Source software construction tool. |
scons, scons-3.1.2, scons-3.1.2.bat, scons-configure-cache, scons-configure-cache-3.1.2, scons-time, scons-time-3.1.2, scons.bat, sconsign, sconsign-3.1.2 |
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GITHUB
|
ghcr.io/autamus/scr |
SCR caches checkpoint data in storage on the compute nodes of a Linux cluster to provide a fast, scalable checkpoint/restart capability for MPI codes. |
scancel, scontrol, scp, scr_check_node, scr_ckpt_interval.py, scr_copy, scr_crc32, scr_env, scr_flush_file, scr_get_jobstep_id, scr_glob_hosts, scr_halt, scr_halt_cntl, scr_index, scr_inspect, scr_kill_jobstep, scr_list_dir, scr_list_down_nodes, scr_log_event, scr_log_transfer, scr_nodes_file, scr_postrun, scr_prefix, scr_prerun, scr_print, scr_rebuild_partner, scr_rebuild_rs, scr_rebuild_xor, scr_retries_halt, scr_run, scr_scavenge, scr_srun, scr_test_datemanip, scr_test_runtime, scr_watchdog, scrlog.py, scrontab |
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GITHUB
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ghcr.io/autamus/siesta |
SIESTA performs electronic structure calculations and ab initio molecular dynamics simulations of molecules and solids. |
siesta |
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GITHUB
|
ghcr.io/autamus/slate |
The Software for Linear Algebra Targeting Exascale (SLATE) project is to provide fundamental dense linear algebra capabilities to the US Department of Energy and to the high-performance computing (HPC) community at large. |
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GITHUB
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ghcr.io/autamus/slepc |
Scalable Library for Eigenvalue Problem Computations. |
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GITHUB
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ghcr.io/autamus/snappy |
Snappy (previously known as Zippy) is a fast data compression and decompression library written in C++ by Google based on ideas from LZ77 and open-sourced in 2011. |
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GITHUB
|
ghcr.io/autamus/spades |
St. Petersburg genome assembler – an assembly toolkit containing various assembly pipelines. |
spades-bwa, spades-convert-bin-to-fasta, spades-core, spades-corrector-core, spades-gbuilder, spades-gmapper, spades-gsimplifier, spades-hammer, spades-ionhammer, spades-kmer-estimating, spades-kmercount, spades-read-filter, spades-truseq-scfcorrection, spades.py, spaligner |
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GITHUB
|
ghcr.io/autamus/sparsehash |
several hash-map implementations, similar in API to SGI's hash_map class, but with different performance characteristics. |
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GITHUB
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ghcr.io/autamus/sqlite |
SQLite is a relational database management system contained in a C library. |
sqlite3 |
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GITHUB
|
ghcr.io/autamus/stc |
The Swift-Turbine Compiler (STC) |
stc, swift-t |
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GITHUB
|
ghcr.io/autamus/stringtie |
StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts. |
stringtie |
|
GITHUB
|
ghcr.io/autamus/superlu |
SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines. |
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GITHUB
|
ghcr.io/autamus/sz |
Error-bounded Lossy Compressor for HPC Data |
sz |
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GITHUB
|
ghcr.io/autamus/tasmanian |
The Toolkit for Adaptive Stochastic Modeling and Non-Intrusive ApproximatioN is a robust library for high dimensional integration and interpolation as well as parameter calibration. https://tasmanian.ornl.gov |
tasgrid |
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GITHUB
|
ghcr.io/autamus/tau |
A portable profiling and tracing toolkit for performance analysis of parallel programs written in Fortran, C, C++, UPC, Java, Python. |
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GITHUB
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ghcr.io/autamus/tcsh |
|
tcsh |
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GITHUB
|
ghcr.io/autamus/trilinos |
The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented software framework for the solution of large-scale, complex multi-physics engineering and scientific problems. A unique design feature of Trilinos is its focus on packages. |
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GITHUB
|
ghcr.io/autamus/turbine |
Turbine is the Swift/T runtime |
turbine, turbine-pilot, turbine-read-doubles, turbine-write-doubles |
|
GITHUB
|
ghcr.io/autamus/udunits |
The UDUNITS package supports units of physical quantities. Its C library provides for arithmetic manipulation of units and for conversion of numeric values between compatible units. |
udunits2 |
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GITHUB
|
ghcr.io/autamus/umap |
Umap is a library that provides an mmap()-like interface to a simple, user-space page fault handler based on the userfaultfd Linux feature (starting with 4.3 linux kernel). |
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GITHUB
|
ghcr.io/autamus/unifyfs |
User level file system that enables applications to use node-local storage as burst buffers for shared files. |
unifyfs, unifyfs-config, unifyfsd |
|
GITHUB
|
ghcr.io/autamus/unixodbc |
unixODBC-Test containing Qt based ODBC test tool, and autotest framework. |
odbc_config, odbcinst |
|
GITHUB
|
ghcr.io/autamus/upcxx |
UPC++ is a C++ library that supports Partitioned Global Address Space (PGAS) programming, and is designed to interoperate smoothly and efficiently with MPI, OpenMP, CUDA and AMTs. |
upcxx, upcxx-meta, upcxx-run, upcxx.sh |
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GITHUB
|
ghcr.io/autamus/valgrind |
A suite of tools for debugging and profiling. |
valgrind, valgrind-di-server, valgrind-listener |
|
GITHUB
|
ghcr.io/autamus/veloc |
Very-Low Overhead Checkpointing System. VELOC is a multi-level checkpoint-restart runtime for HPC supercomputing infrastructures |
veloc-backend, veloc_check_node, veloc_env, veloc_glob_hosts, veloc_jsrun, veloc_list_down_nodes |
|
GITHUB
|
ghcr.io/autamus/wget |
GNU Wget is a free software package for retrieving files using HTTP, HTTPS, FTP and FTPS, the most widely used Internet protocols. |
wget |
|
GITHUB
|
ghcr.io/autamus/xnnpack |
High-efficiency floating-point neural network inference operators for mobile, server, and Web |
|
|
GITHUB
|
ghcr.io/autamus/xrootd |
XRootD software framework is a fully generic suite for fast, low latency and scalable data access, which can serve natively any kind of data, organized as a hierarchical filesystem-like namespace, based on the concept of directory. |
xrdacctest, xrdadler32, xrdcopy, xrdcp, xrdfs, xrdgsiproxy, xrdgsitest, xrdmapc, xrdpfc_print, xrdpinls, xrdpwdadmin, xrdsssadmin, xrootd, xrootd-config |
|
GITHUB
|
ghcr.io/autamus/xz |
XZ Utils is free general-purpose data compression software with a high compression ratio. |
xz, xzcat, xzcmp, xzdec, xzdiff, xzegrep, xzfgrep, xzgrep, xzless, xzmore |
|
GITHUB
|
ghcr.io/autamus/zfp |
zfp is a compressed number format for multidimensional floating-point and integer arrays. |
|
|
GITHUB
|
ghcr.io/autamus/zlib |
zlib is a software library used for data compression. zlib was written by Jean-loup Gailly and Mark Adler and is an abstraction of the DEFLATE compression algorithm used in their gzip file compression program. |
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GITHUB
|
ghcr.io/singularityhub/github-ci |
An example SIF on GitHub packages to pull with oras |
|
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GITHUB
|
golang |
Go (a.k.a., Golang) is a programming language first developed at Google. |
go, gofmt |
|
GITHUB
|
gradle |
Gradle is a build tool with a focus on build automation and support for multi-language development. |
gradle |
|
GITHUB
|
hashicorp/consul |
Automatic build of consul based on the current release. |
consul, docker-entrypoint.sh |
|
GITHUB
|
hashicorp/vault |
Vault is a tool for securely accessing secrets via a unified interface and tight access control. |
vault |
|
GITHUB
|
julia |
An interpreted, high-level, high-performance dynamic programming language for technical computing. |
julia |
|
GITHUB
|
jupyter/datascience-notebook |
Jupyter Datascience Notebook from https://github.com/jupyter/docker-stacks |
run-notebook |
|
GITHUB
|
jupyter/minimal-notebook |
Jupyter Minimal Notebook from https://github.com/jupyter/docker-stacks |
run-notebook |
|
GITHUB
|
jupyter/pyspark-notebook |
Jupyter Pyspark Notebook from https://github.com/jupyter/docker-stacks |
run-notebook |
|
GITHUB
|
jupyter/r-notebook |
Jupyter R Notebook from https://github.com/jupyter/docker-stacks |
run-notebook |
|
GITHUB
|
jupyter/scipy-notebook |
Jupyter Notebook Scientific Python Stack from https://github.com/jupyter/docker-stacks |
run-notebook |
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GITHUB
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jupyter/tensorflow-notebook |
Jupyter Tensorflow Notebook from https://github.com/jupyter/docker-stacks |
run-notebook |
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GITHUB
|
kibana |
Kibana gives shape to any kind of data — structured and unstructured — indexed in Elasticsearch. |
kibana, kibana-encryption-keys, kibana-keystore, kibana-plugin |
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GITHUB
|
mariadb |
MariaDB Server is one of the most popular database servers in the world. It’s made by the original developers of MySQL and guaranteed to stay open source. Notable users include Wikipedia, DBS Bank and ServiceNow. |
mariabackup, mariadb, mariadb-access, mariadb-admin, mariadb-analyze, mariadb-backup, mariadb-binlog, mariadb-check, mariadb-conv, mariadb-convert-table-format, mariadb-dump, mariadb-dumpslow, mariadb-find-rows, mariadb-fix-extensions, mariadb-hotcopy, mariadb-import, mariadb-install-db, mariadb-optimize, mariadb-plugin, mariadb-repair, mariadb-report, mariadb-secure-installation, mariadb-service-convert, mariadb-setpermission, mariadb-show, mariadb-slap, mariadb-tzinfo-to-sql, mariadb-upgrade, mariadb-waitpid, mariadbcheck, mariadbd-multi, mariadbd-safe, mariadbd-safe-helper |
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GITHUB
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mongo |
MongoDB is a free and open-source cross-platform document-oriented database program. Classified as a NoSQL database program, MongoDB uses JSON-like documents with schemata. |
mongo, mongod, mongodump, mongoexport, mongofiles, mongoimport, mongos, mongostat, mongostore, mongotop |
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GITHUB
|
mysql |
MySQL is the world's most popular open source database. |
mysql, mysql_config_editor, mysql_secure_installation, mysql_ssl_rsa_setup, mysql_tzinfo_to_sql, mysql_upgrade, mysqladmin, mysqlbinlog, mysqlcheck, mysqld_multi, mysqld_safe, mysqldump, mysqldumpslow, mysqlimport, mysqlpump, mysqlshow, mysqlslap |
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GITHUB
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ncbi/blast |
The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. |
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GITHUB
|
nginx |
Nginx (pronounced 'engine-x') is an open source reverse proxy server for HTTP, HTTPS, SMTP, POP3, and IMAP protocols, as well as a load balancer, HTTP cache, and a web server (origin server). |
nginx, nginx-debug |
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GITHUB
|
node |
Node.js is a software platform for scalable server-side and networking applications. |
node, nodejs, npm, npx, yarn, yarnpkg |
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GITHUB
|
nvcr.io/hpc/autodock |
The AutoDock-GPU Suite is a growing collection of methods for computational docking and virtual screening, for use in structure-based drug discovery and exploration of the basic mechanisms of biomolecular structure and function. More info on AutoDock-GPU be located at https://ccsb.scripps.edu/autodock/ and https://github.com/ccsb-scripps/AutoDock-GPU#usage. |
autodock |
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GITHUB
|
nvcr.io/hpc/gromacs |
GROMACS is a popular molecular dynamics application used to simulate proteins and lipids. |
python |
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GITHUB
|
nvcr.io/hpc/lammps |
Large-scale Atomic/Molecular Massively Parallel Simulator (LAMMPS) is a software application designed for molecular dynamics simulations. It has the potentials for solid-state materials (metals, semiconductor), soft matter (biomolecules, polymers), and coarse-grained or mesoscopic systems. The main use-case is atom scale particle modeling or, more generically, as a parallel particle simulator at the atomic, meson, or continuum scale. LAMMPS runs on single processors or in parallel using message-passing techniques and a spatial-decomposition of the simulation domain. Read more on the LAMMPS website https://lammps.sandia.gov/. |
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GITHUB
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nvcr.io/hpc/namd |
NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD uses the popular molecular graphics program VMD for simulation setup and trajectory analysis, but is also file-comp atible with AMBER, CHARMM, and X-PLOR. |
charmrun, flipbinpdb, flipdcd, namd3, psfgen, sortreplicas, vmd |
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GITHUB
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nvcr.io/hpc/preflightcheck |
The Pre-Flight Check container verifies that the container runtime is setup correctly for GPUs and InfiniBand. |
|
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GITHUB
|
nvcr.io/hpc/quantum_espresso |
Quantum ESPRESSO is an integrated suite of Open-Source computer codes for electronic-structure calculations and materials modeling at the nanoscale based on density-functional theory, plane waves, and pseudopotentials. |
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GITHUB
|
nvcr.io/nvidia/caffe |
NVIDIA Caffe, also known as NVCaffe, is an NVIDIA-maintained fork of Berkeley Vision and Learning Center (BVLC) Caffe tuned for NVIDIA GPUs, particularly in multi-GPU configurations. |
python |
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GITHUB
|
nvcr.io/nvidia/digits |
The NVIDIA Deep Learning GPU Training System (DIGITS) puts the power of deep learning into the hands of engineers and data scientists. |
python |
|
GITHUB
|
nvcr.io/nvidia/hpc-benchmarks |
The NVIDIA HPC-Benchmarks collection provides three NVIDIA accelerated HPC benchmarks: HPL-NVIDIA, HPL-AI-NVIDIA, and HPCG-NVIDIA. |
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GITHUB
|
nvcr.io/nvidia-hpcvis/paraview |
ParaView is one of the most popular visualization software for analyzing HPC datasets. |
pvdataserver, pvrenderserver, pvbatch, pypython, pvserver |
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GITHUB
|
nvcr.io/nvidia/pytorch |
PyTorch is a GPU accelerated tensor computational framework with a Python front end. Functionality can be easily extended with common Python libraries such as NumPy, SciPy, and Cython. Automatic differentiation is done with a tape-based system at both a functional and neural network layer level. |
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GITHUB
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nvcr.io/nvidia/rapidsai/rapidsai |
The RAPIDS suite of software libraries gives you the freedom to execute end-to-end data science and analytics pipelines entirely on GPUs. |
python |
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GITHUB
|
nvcr.io/nvidia/tensorflow |
TensorFlow is an open-source software library for high-performance numerical computation. Its flexible architecture allows easy deployment of computation across a variety of platforms (CPUs, GPUs, TPUs), and from desktops to clusters of servers to mobile and edge devices. |
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GITHUB
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openjdk |
OpenJDK is an open-source implementation of the Java Platform, Standard Edition. |
jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jdeprscan, jdeps, jfr, jhsdb, jimage, jinfo, jlink, jmap, jmod, jobs, join, jpackage, jps, jrunscript, jshell, jstack, jstat, jstatd |
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GITHUB
|
php |
While designed for web development, the PHP scripting language also provides general-purpose use. |
php, php-cgi, php-config, phpdbg, phpize |
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GITHUB
|
poldracklab/mriqc |
Automatic prediction of quality and visual reporting of MRI scans. |
mriqc |
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GITHUB
|
postgres |
PostgreSQL, often simply 'Postgres', is an object-relational database management system (ORDBMS) with an emphasis on extensibility and standards-compliance. |
clusterdb, createdb, createuser, dropdb, dropuser, initdb, oid2name, pg_archivecleanup, pg_basebackup, pg_checksums, pg_config, pg_controldata, pg_ctl, pg_dump, pg_dumpall, pg_isready, pg_receivewal, pg_recvlogical, pg_resetwal, pg_restore, pg_rewind, pg_standby, pg_test_fsync, pg_test_timing, pg_upgrade, pg_verifybackup, pg_waldump, pgbench, postgres, postmaster, psql, reindexdb, vacuumdb, vacuumlo |
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GITHUB
|
python |
An interpreted, high-level and general-purpose programming language. |
python |
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GITHUB
|
quay.io/biocontainers/10x_bamtofastq |
singularity registry hpc automated addition for 10x_bamtofastq |
bamtofastq |
|
GITHUB
|
quay.io/biocontainers/2pg_cartesian |
shpc-registry automated BioContainers addition for 2pg_cartesian |
gmx, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, protpred-Gromacs-Dominance, protpred-Gromacs-Front, protpred-Gromacs-MC_Metropolis, protpred-Gromacs-Mono, protpred-Gromacs-NSGA2, protpred-Gromacs-Random_Algorithm, protpred-Gromacs-Sort_Method_Files_by_Front_Dominance, protpred-Gromacs-Sort_Method_by_Front_Dominance, protpred-Gromacs-Test_compute_Diehdral, protpred-Gromacs-Test_compute_objetivies, protpred-Gromacs-Test_crossover, protpred-Gromacs-Test_dm_refinement, protpred-Gromacs-Test_load_population, protpred-Gromacs-Test_random_number, protpred-Gromacs-Test_rotation, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
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GITHUB
|
quay.io/biocontainers/3seq |
singularity registry hpc automated addition for 3seq |
3seq |
|
GITHUB
|
quay.io/biocontainers/aacon |
singularity registry hpc automated addition for aacon |
aacon, jwebserver, pcre2posix_test, jpackage, cups-config, ippeveprinter, ipptool, hb-info, tjbench, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole |
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GITHUB
|
quay.io/biocontainers/abacas |
shpc-registry automated BioContainers addition for abacas |
abacas.1.3.1.pl, abacas.pl, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot |
|
GITHUB
|
quay.io/biocontainers/abacat |
shpc-registry automated BioContainers addition for abacat |
phenotyping.py, prodigal.py, prokka.py, fastANI, annotate.py, prodigal, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/abawaca |
shpc-registry automated BioContainers addition for abawaca |
abawaca |
|
GITHUB
|
quay.io/biocontainers/abeona |
shpc-registry automated BioContainers addition for abeona |
abeona, cortexpy, kallisto, mccortex, mccortex127, mccortex31, mccortex63, mccortex95, nextflow, nextflow.bak, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
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GITHUB
|
quay.io/biocontainers/abismal |
shpc-registry automated BioContainers addition for abismal |
abismal, abismalidx, simreads |
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GITHUB
|
quay.io/biocontainers/abnumber |
shpc-registry automated BioContainers addition for abnumber |
ANARCI, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat |
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GITHUB
|
quay.io/biocontainers/abpoa |
shpc-registry automated BioContainers addition for abpoa |
abpoa |
|
GITHUB
|
quay.io/biocontainers/abra2 |
shpc-registry automated BioContainers addition for abra2 |
abra2, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
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GITHUB
|
quay.io/biocontainers/abricate |
shpc-registry automated BioContainers addition for abricate |
abricate, abricate-get_db, any2fasta, funzip, unzipsfx, zipgrep, zipinfo, unzip, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee |
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GITHUB
|
quay.io/biocontainers/abritamr |
shpc-registry automated BioContainers addition for abritamr |
abriTAMR, abritamr, amr_report, amrfinder, amrfinder_update, dna_mutation, fasta2parts, fasta_check, fasta_extract, gff_check, vba_extract.py, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml |
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GITHUB
|
quay.io/biocontainers/abromics_galaxy_json_extractor |
singularity registry hpc automated addition for abromics_galaxy_json_extractor |
abromics_extract, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/abruijn |
shpc-registry automated BioContainers addition for abruijn |
abruijn, abruijn-assemble, abruijn-polish, abruijn-repeat, easy_install-2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5 |
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GITHUB
|
quay.io/biocontainers/abundancebin |
shpc-registry automated BioContainers addition for abundancebin |
abundancebin |
|
GITHUB
|
quay.io/biocontainers/abyss-k128 |
shpc-registry automated BioContainers addition for abyss-k128 |
|
|
GITHUB
|
quay.io/biocontainers/abyss |
shpc-registry automated BioContainers addition for abyss |
ABYSS, ABYSS-P, abyss-align, abyss-bloom, abyss-bloom-dbg, abyss-bloom-dist.mk, abyss-bloom-dist.mk.Makefile, abyss-bowtie, abyss-bowtie2, abyss-bwa, abyss-bwamem, abyss-bwasw, abyss-db-txt, abyss-dida, abyss-fac, abyss-fatoagp, abyss-filtergraph, abyss-fixmate, abyss-fixmate-ssq, abyss-gapfill, abyss-gc, abyss-index, abyss-junction, abyss-kaligner, abyss-layout, abyss-longseqdist, abyss-map, abyss-map-ssq, abyss-mergepairs, abyss-overlap, abyss-paired-dbg, abyss-paired-dbg-mpi, abyss-pe, abyss-pe.Makefile, abyss-rresolver-short, abyss-samtoafg, abyss-scaffold, abyss-sealer, abyss-stack-size, abyss-tabtomd, abyss-todot, abyss-tofastq, irqtop, lsirq, nsenter, prlimit, scriptlive, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject |
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GITHUB
|
quay.io/biocontainers/ac-diamond |
shpc-registry automated BioContainers addition for ac-diamond |
ac-diamond |
|
GITHUB
|
quay.io/biocontainers/ac |
shpc-registry automated BioContainers addition for ac |
AC |
|
GITHUB
|
quay.io/biocontainers/acdc |
singularity registry hpc automated addition for acdc |
acdc, acdc-filter-fasta-by-name.awk, acdc-make-fastas, kraken, kraken-build, kraken-filter, kraken-mpa-report, kraken-report, kraken-translate, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, jellyfish, tar, idn2, wget |
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GITHUB
|
quay.io/biocontainers/aci |
singularity registry hpc automated addition for aci |
aci, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/acms |
singularity registry hpc automated addition for acms |
acmbuild, acmbuild_checkCompatibility, acmbuild_train, acmsearch, addRNAoptions.pl, gapc, ghc, ghc-8.10.7, ghc-pkg, ghc-pkg-8.10.7, ghci, ghci-8.10.7, hp2ps, hpc, hsc2hs, runghc, runghc-8.10.7, runhaskell |
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GITHUB
|
quay.io/biocontainers/actc |
singularity registry hpc automated addition for actc |
actc |
|
GITHUB
|
quay.io/biocontainers/adam |
shpc-registry automated BioContainers addition for adam |
adam-shell, adam-submit, beeline, beeline.cmd, csv-import, docker-image-tool.sh, elasticurl, elasticurl_cpp, elastipubsub, find-spark-home, find-spark-home.cmd, find_spark_home.py, load-spark-env.cmd, load-spark-env.sh, orc-memory, orc-scan, pyspark, pyspark.cmd, pyspark2.cmd, run-example, run-example.cmd, spark-class, spark-class.cmd, spark-class2.cmd, spark-shell, spark-shell.cmd, spark-shell2.cmd, spark-sql, spark-sql.cmd, spark-sql2.cmd, spark-submit, spark-submit.cmd, spark-submit2.cmd, sparkR, sparkR.cmd, sparkR2.cmd, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin |
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GITHUB
|
quay.io/biocontainers/adapt |
shpc-registry automated BioContainers addition for adapt |
analyze_coverage.py, design.py, design_naively.py, import_pb_to_tensorboard, pick_test_targets.py, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2 |
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GITHUB
|
quay.io/biocontainers/adapterremoval |
shpc-registry automated BioContainers addition for adapterremoval |
AdapterRemoval, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/adapterremovalfixprefix |
shpc-registry automated BioContainers addition for adapterremovalfixprefix |
AdapterRemovalFixPrefix, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
|
quay.io/biocontainers/addrg |
shpc-registry automated BioContainers addition for addrg |
addrg, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/admixtools |
shpc-registry automated BioContainers addition for admixtools |
convertf, dof4, dof4a, dowtjack, expfit.sh, gcount, getresult, grabpars, jackdiff, kimf, mergeit, mkpretty, numlines, qp3Pop, qp4diff, qpAdm, qpBound, qpDpart, qpDstat, qpF4ratio, qpGraph, qpWave, qpdslow, qpff3base, qpfmv, qpfstats, qpmix, qpreroot, rexpfit.r, rolloff, rolloffp, simpjack2, wtjack.pl, xtractcol, xtractcolv |
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GITHUB
|
quay.io/biocontainers/admixture |
shpc-registry automated BioContainers addition for admixture |
admixture |
|
GITHUB
|
quay.io/biocontainers/adpred |
shpc-registry automated BioContainers addition for adpred |
run-adpred, theano-cache, theano-nose, freeze_graph, mako-render, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard |
|
GITHUB
|
quay.io/biocontainers/advntr |
shpc-registry automated BioContainers addition for advntr |
adVNTR-Filtering, advntr, unit2, theano-cache, theano-nose, freeze_graph, mako-render, tf_upgrade_v2, muscle, tflite_convert, saved_model_cli, toco |
|
GITHUB
|
quay.io/biocontainers/aegean |
shpc-registry automated BioContainers addition for aegean |
canon-gff3, gaeval, genometools-config, gt, locuspocus, parseval, pmrna, tidygff3, xtractore, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, 2to3-3.9, idle3.9, pydoc3.9 |
|
GITHUB
|
quay.io/biocontainers/aenum |
shpc-registry automated BioContainers addition for aenum |
2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5, wish8.5 |
|
GITHUB
|
quay.io/biocontainers/aeon |
singularity registry hpc automated addition for aeon |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/afpdb |
singularity registry hpc automated addition for afpdb |
numpy-config, ipython3, ipython, tabulate, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, pygmentize, normalizer |
|
GITHUB
|
quay.io/biocontainers/afplot |
shpc-registry automated BioContainers addition for afplot |
|
|
GITHUB
|
quay.io/biocontainers/afterqc |
shpc-registry automated BioContainers addition for afterqc |
after.py, barcodeprocesser.py, bubbledetector.py, bubbleprocesser.py, circledetector.py, debubble.py, fastq.py, preprocesser.py, qcreporter.py, qualitycontrol.py, util.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/agat |
shpc-registry automated BioContainers addition for agat |
agat_convert_bed2gff.pl, agat_convert_embl2gff.pl, agat_convert_genscan2gff.pl, agat_convert_mfannot2gff.pl, agat_convert_minimap2_bam2gff.pl, agat_convert_sp_gff2bed.pl, agat_convert_sp_gff2gtf.pl, agat_convert_sp_gff2tsv.pl, agat_convert_sp_gff2zff.pl, agat_convert_sp_gxf2gxf.pl, agat_sp_Prokka_inferNameFromAttributes.pl, agat_sp_add_attribute_shortest_exon_size.pl, agat_sp_add_attribute_shortest_intron_size.pl, agat_sp_add_introns.pl, agat_sp_add_start_and_stop.pl, agat_sp_alignment_output_style.pl, agat_sp_clipN_seqExtremities_and_fixCoordinates.pl, agat_sp_compare_two_BUSCOs.pl, agat_sp_compare_two_annotations.pl, agat_sp_complement_annotations.pl, agat_sp_ensembl_output_style.pl, agat_sp_extract_attributes.pl, agat_sp_extract_sequences.pl, agat_sp_filter_by_ORF_size.pl, agat_sp_filter_by_locus_distance.pl, agat_sp_filter_by_mrnaBlastValue.pl, agat_sp_filter_feature_by_attribute_presence.pl, agat_sp_filter_feature_by_attribute_value.pl, agat_sp_filter_feature_from_keep_list.pl, agat_sp_filter_feature_from_kill_list.pl, agat_sp_filter_gene_by_intron_numbers.pl, agat_sp_filter_gene_by_length.pl, agat_sp_filter_incomplete_gene_coding_models.pl, agat_sp_filter_record_by_coordinates.pl, agat_sp_fix_cds_phases.pl, agat_sp_fix_features_locations_duplicated.pl, agat_sp_fix_fusion.pl, agat_sp_fix_longest_ORF.pl, agat_sp_fix_overlaping_genes.pl, agat_sp_fix_small_exon_from_extremities.pl, agat_sp_flag_premature_stop_codons.pl, agat_sp_flag_short_introns.pl, agat_sp_functional_statistics.pl, agat_sp_keep_longest_isoform.pl, agat_sp_kraken_assess_liftover.pl, agat_sp_list_short_introns.pl, agat_sp_load_function_from_protein_align.pl, agat_sp_manage_IDs.pl, agat_sp_manage_UTRs.pl, agat_sp_manage_attributes.pl, agat_sp_manage_functional_annotation.pl, agat_sp_manage_introns.pl, agat_sp_merge_annotations.pl, agat_sp_prokka_fix_fragmented_gene_annotations.pl, agat_sp_sensitivity_specificity.pl, agat_sp_separate_by_record_type.pl, agat_sp_statistics.pl, agat_sp_webApollo_compliant.pl, agat_sq_add_attributes_from_tsv.pl, agat_sq_add_hash_tag.pl, agat_sq_add_locus_tag.pl, agat_sq_count_attributes.pl, agat_sq_filter_feature_from_fasta.pl, agat_sq_list_attributes.pl, agat_sq_manage_IDs.pl, agat_sq_manage_attributes.pl, agat_sq_mask.pl, agat_sq_remove_redundant_entries.pl, agat_sq_repeats_analyzer.pl, agat_sq_reverse_complement.pl, agat_sq_rfam_analyzer.pl, agat_sq_split.pl, agat_sq_stat_basic.pl, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc |
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GITHUB
|
quay.io/biocontainers/agc |
singularity registry hpc automated addition for agc |
agc |
|
GITHUB
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quay.io/biocontainers/age-metasv |
shpc-registry automated BioContainers addition for age-metasv |
age_align |
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GITHUB
|
quay.io/biocontainers/agfusion |
shpc-registry automated BioContainers addition for agfusion |
agfusion, epylint, isort, nose2, nose2-2.7, nose2-3.6, pyensembl, pylint, pyreverse, symilar, coverage, futurize, pasteurize, f2py3.8, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/agg |
shpc-registry automated BioContainers addition for agg |
agg |
|
GITHUB
|
quay.io/biocontainers/agouti |
singularity registry hpc automated addition for agouti |
agouti, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/agrvate |
shpc-registry automated BioContainers addition for agrvate |
agrvate, file, snippy, snippy-clean_full_aln, snippy-core, snippy-multi, snippy-vcf_extract_subs, snippy-vcf_report, snippy-vcf_to_tab, vcfnormalizesvs, vcfnull2ref, vcfunphase, snp-sites, filter-table, spdi2prod, vt, seqkit, plotBfst.R, plotHapLrt.R, plotHaplotypes.R, plotPfst.R, plotSmoothed.R |
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GITHUB
|
quay.io/biocontainers/airr |
shpc-registry automated BioContainers addition for airr |
airr-tools, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/akt |
shpc-registry automated BioContainers addition for akt |
akt |
|
GITHUB
|
quay.io/biocontainers/albatradis |
shpc-registry automated BioContainers addition for albatradis |
add_tradis_tags, albatradis, albatradis-annotation, albatradis-artemis_project, albatradis-gene_reports, albatradis-presence_absence, albatradis-scatterplot, bacteria_tradis, basqcol, check_tradis_tags, combine_tradis_plots, fetchseq, filter_tradis_tags, mixreads, readstats, remove_tradis_tags, simqual, simread, smalt, splitmates, splitreads, tradis_comparison.R, tradis_essentiality.R, tradis_gene_insert_sites, tradis_merge_plots, tradis_plot, trunkreads, fastaq, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches |
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GITHUB
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quay.io/biocontainers/alcor |
singularity registry hpc automated addition for alcor |
AlcoR |
|
GITHUB
|
quay.io/biocontainers/alder |
shpc-registry automated BioContainers addition for alder |
alder, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/alen |
singularity registry hpc automated addition for alen |
alen |
|
GITHUB
|
quay.io/biocontainers/aletsch |
shpc-registry automated BioContainers addition for aletsch |
aletsch, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/alevin-fry |
shpc-registry automated BioContainers addition for alevin-fry |
alevin-fry |
|
GITHUB
|
quay.io/biocontainers/alfa |
shpc-registry automated BioContainers addition for alfa |
alfa, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed |
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GITHUB
|
quay.io/biocontainers/alfred |
shpc-registry automated BioContainers addition for alfred |
alfred, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/align_it |
shpc-registry automated BioContainers addition for align_it |
align-it, babel, obchiral, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop |
|
GITHUB
|
quay.io/biocontainers/aligncov |
singularity registry hpc automated addition for aligncov |
aligncov, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl |
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GITHUB
|
quay.io/biocontainers/alignlib-lite |
shpc-registry automated BioContainers addition for alignlib-lite |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/alignment |
shpc-registry automated BioContainers addition for alignment |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/alignoth |
singularity registry hpc automated addition for alignoth |
alignoth |
|
GITHUB
|
quay.io/biocontainers/alignstats |
shpc-registry automated BioContainers addition for alignstats |
alignstats, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/allo |
singularity registry hpc automated addition for allo |
allo, flatc, protoc-24.4.0, h5tools_test_utils, import_pb_to_tensorboard, h5fuse.sh, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, h5delete, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, markdown_py, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen |
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GITHUB
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quay.io/biocontainers/altair-mf |
singularity registry hpc automated addition for altair-mf |
AltaiR |
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GITHUB
|
quay.io/biocontainers/altamisa |
shpc-registry automated BioContainers addition for altamisa |
isatab2dot, isatab2isatab, isatab_validate, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
|
quay.io/biocontainers/alv |
shpc-registry automated BioContainers addition for alv |
alv, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/amap |
shpc-registry automated BioContainers addition for amap |
amap, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides |
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GITHUB
|
quay.io/biocontainers/amas |
shpc-registry automated BioContainers addition for amas |
AMAS.py, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/amdirt |
singularity registry hpc automated addition for amdirt |
AMDirT, streamlit, streamlit.cmd, watchmedo, markdown-it, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, tjbench, gflags_completions.sh, jupyter-kernel, jupyter-kernelspec, jupyter-run, f2py3.11, curve_keygen, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, ipython3 |
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GITHUB
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quay.io/biocontainers/aminoextract |
singularity registry hpc automated addition for aminoextract |
AminoExtract, aminoextract, markdown-it, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, pygmentize, python3.1 |
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GITHUB
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quay.io/biocontainers/amos |
shpc-registry automated BioContainers addition for amos |
AMOScmp, AMOScmp-shortReads, AMOScmp-shortReads-alignmentTrimmed, Bundler, Chainer, FRCurve, FilterEdgesByCluster, Joiner, Linearize, MarkRepeats, Minimo, OrientContigs, OutputMotifs, OutputResults, OutputScaffolds, RankMotifs, ace2contig, agp2amos, amos2ace, amos2frg, amos2mates, amos2sq, amosvalidate, analyze-read-depth, analyzeSNPs, arachne2ctg, arachne2scaff, arrive, arrive2, asmQC, asmQC2, assembleRNAs, astats, bank-clean, bank-combine, bank-mapping, bank-report, bank-transact, bank-tutorial, bank-unlock, bank2contig, bank2coverage, bank2fasta, bank2lib, bank2sam, bank2scaff, benchmark2arachne, benchmark2ca, benchmark2mates, benchmark2ta, benchmark_qual, benchmark_seq, blasr2coords, blat2nucmer, ca2ctg, ca2mates, ca2scaff, ca2singletons, ca2ta, casm-breaks, casm-layout, castats, cavalidate, cestat-cov, cgb2ctg, clk, clusterSnps, contig-cmp, contig2contig, coords2cam, count-kmers, count-qmers, ctg2fasta, ctg2umdcontig, ctgovl, cvgChop, cvgStat, delta2clr, delta2cvg, dumpContigsAsReads, dumpFeatures, dumpmates, dumpreads, excl_seqs, extractContig, extractScaffold, fasta_select_len, fasta_to_fastq, fastq64_to_fastq33, fastq_filter, fastq_rename, fastq_to_fasta_fast, fastqqc, filter_contig, filter_seq, filterfrg, find-duplicate-reads, find-query-breaks, find-tandem, findChimeras, findMissingMates, findTcovSnp, find_ends, fixfastq, fixfrg, fixlib, frg-umd-merge, frg2fasta, frg2fastq, frg2ta, gap-links, gc-content-plot, gccontent, gene_asm, genome-complexity, genome-complexity-fast, getFRCvalues, getN50, getlengths, goBambus2, grow-readbank, hash-overlap, insert-sizes, iterate, kmer-count, kmer-cov, kmer-cov-plot, kmers, ktrimfrg, library-histogram, list-linked-contigs, listGCContent, listReadPlacedStatus, listSingletonMates, listSurrogates, listcontigreads, load-overlaps, loadFeatures, make-consensus, make-consensus_poly, merge-contigs, message-count, message-extract, message-validate, minimus, minimus2, minimus2-blat, missing-reads, normalizeScaffold, nucmer2ovl, nucmerAnnotate, olapsFromContig, overlap-align, ovl-degr-dist, ovl2OVL, parsecasm, partitionBank, phd2afg, postCAqc, preTA, preassembleFrgs, printScaff, pullTArchive, pyrosim, qmer-filter, read-cov-plot, readinfo2cam, rearrangeSeqs, recallConsensus, renameReads, rerunMultiTest, resetFragLibrary, revFasta, revScaffold, runAmos, runMultiTest, runTA, runTest, running-cmp, samPileupConsensus, samtoafg, scaff2fasta, scaffoldRange2Ungapped, select-reads, show-ma-asm, shuffleBank, sidebyside, sim-cover-depth, sim-cover2, sim-shotgun, simple-overlap, simpleContigLoader, simplifyLibraries, singles, sort2, stats, summarizeMultiTest, suspiciousfeat2region, ta2ace, tab2ovls, tagsum-reduce, tandemCollapse, tarchive2amos, tarchive2ca, tigger, tiling2cam, toAmos, toAmos_new, toArachne, trace_comment, trace_comments, trace_convert, trace_scf_dump, trace_seq, translate-fasta, trimByOvl, trimends, trimfrg, untangle, updateBankPositions, updateClrRanges, updateDeltaClr, updateLibSizes, vecfix, verify-layout, jellyfish, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer |
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GITHUB
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quay.io/biocontainers/ampcombi |
shpc-registry automated BioContainers addition for ampcombi |
amp_database.py, amp_fasta.py, ampcombi, ampcombi.py, check_input.py, diamond_alignment.sh, diamond_makedb.sh, print_header.py, reformat_tables.py, diamond, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/ampd-up |
singularity registry hpc automated addition for ampd-up |
AMPd-Up, ninja, convert-caffe2-to-onnx, convert-onnx-to-caffe2, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, f2py3.6, futurize, pasteurize, protoc, 2to3-3.6, idle3.6, pydoc3.6, python3.6 |
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GITHUB
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quay.io/biocontainers/amplici |
singularity registry hpc automated addition for amplici |
run_AmpliCI |
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GITHUB
|
quay.io/biocontainers/amplicon_coverage_plot |
shpc-registry automated BioContainers addition for amplicon_coverage_plot |
amplicov, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/ampliconclassifier |
shpc-registry automated BioContainers addition for ampliconclassifier |
amplicon_classifier.py, amplicon_similarity.py, amplicons_intersecting_bed.py, feature_similarity.py, make_input.sh, make_results_table.py, softlink_images.py, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp |
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GITHUB
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quay.io/biocontainers/ampliconsuite |
singularity registry hpc automated addition for ampliconsuite |
AmpliconSuite-pipeline.py, GroupedAnalysisAmpSuite.py, cnvkit.py, hb-info, flask, tjbench, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, qualfa2fq.pl, xa2multi.pl, bwa, futurize, pasteurize, fasta-sanitize.pl, plot-ampliconstats, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, f2py3.10, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl |
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GITHUB
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quay.io/biocontainers/amplify |
shpc-registry automated BioContainers addition for amplify |
AMPlify, train_amplify, theano-cache, theano-nose, freeze_graph, mako-render, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, markdown_py |
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GITHUB
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quay.io/biocontainers/ampligone |
singularity registry hpc automated addition for ampligone |
AmpliGone, ampligone, minimap2.py, cmark, pygmentize, futurize, pasteurize, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/amplisim |
singularity registry hpc automated addition for amplisim |
amplisim |
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GITHUB
|
quay.io/biocontainers/amptk |
shpc-registry automated BioContainers addition for amptk |
amptk, amptk_synthetic_mock.py, bold2utax.py, distro, pyfastx, biom, FastTree-2.1.10.c, vsearch, FastTreeMP, FastTree, fasttree, mafft-sparsecore.rb, einsi, fftns, fftnsi |
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GITHUB
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quay.io/biocontainers/amused |
shpc-registry automated BioContainers addition for amused |
AMUSED, AMUSED-KS, alignKMers, bundle, bundler, racc, racc2y, shuffleCodons.rb, shuffleCodonsAddMotifs.rb, y2racc, gdbm_dump, gdbm_load, gdbmtool, jemalloc-config, jeprof, jemalloc.sh, erb, gem, irb, rake |
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GITHUB
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quay.io/biocontainers/anadama2 |
shpc-registry automated BioContainers addition for anadama2 |
anadama2_aws_batch_task, ptangle, pweave, pweave-convert, pypublish, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run, iptest3, curve_keygen, iptest, ipython3, ipython, jupyter-trust |
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GITHUB
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quay.io/biocontainers/ananse |
shpc-registry automated BioContainers addition for ananse |
GenomeOntology.pl, HomerConfig.pm, HomerSVGLogo.pm, ProSampler, SIMA.pl, Statistics.pm, XXmotif, addData.pl, addDataHeader.pl, addGeneAnnotation.pl, addInternalData.pl, addOligos.pl, adjustPeakFile.pl, adjustRedunGroupFile.pl, analyzeChIP-Seq.pl, analyzeHiC, analyzeRNA.pl, analyzeRepeats.pl, ananse, annotateInteractions.pl, annotatePeaks.pl, annotateRelativePosition.pl, annotateTranscripts.pl, assignGeneWeights.pl, assignGenomeAnnotation, assignTSStoGene.pl, batchAnnotatePeaksHistogram.pl, batchFindMotifs.pl, batchFindMotifsGenome.pl, batchMakeHiCMatrix.pl, batchMakeMultiWigHub.pl, batchMakeTagDirectory.pl, batchParallel.pl, bed2DtoUCSCbed.pl, bed2pos.pl, bed2tag.pl, bedToGenePred, bigBedToBed, blat2gtf.pl, bridgeResult2Cytoscape.pl, changeNewLine.pl, checkPeakFile.pl, checkTagBias.pl, chopUpBackground.pl, chopUpPeakFile.pl, chopify.pl, cleanUpPeakFile.pl, cleanUpSequences.pl, cluster2bed.pl, cluster2bedgraph.pl, combineGO.pl, combineHubs.pl, combine_peaks, compareMotifs.pl, condenseBedGraph.pl, cons2fasta.pl, conservationAverage.pl, conservationPerLocus.pl, convertCoordinates.pl, convertIDs.pl, convertOrganismID.pl, coverage_table, dinamo, dreme-py3, dtc, duplicateCol.pl, eland2tags.pl, fasta-dinucleotide-shuffle-py3, fasta-hamming-enrich-py3, fasta-re-match, fasta2tab.pl, fastq2fasta.pl, filterListBy.pl, filterTADsAndCPs.pl, filterTADsAndLoops.pl, findGO.pl, findGOtxt.pl, findHiCCompartments.pl, findHiCDomains.pl, findHiCInteractionsByChr.pl, findKnownMotifs.pl, findMotifs.pl, findMotifsGenome.pl, findPeaks, findRedundantBLAT.pl, findTADsAndLoops.pl, findTADsAndLoopsFromRelMatrix, findTopMotifs.pl, findcsRNATSS.pl, flipPC1toMatch.pl, freq2group.pl, gadem, genePredToBed, genePredToGtf, genericConvertIDs.pl, genomeOntology, genomepy, getChrLengths.pl, getConservedRegions.pl, getDiffExpression.pl, getDifferentialBedGraph.pl, getDifferentialPeaks, getDifferentialPeaksReplicates.pl, getDistalPeaks.pl, getFocalPeaks.pl, getGWASoverlap.pl, getGenesInCategory.pl, getGenomeTilingPeaks, getHiCcorrDiff.pl, getHomerQCstats.pl, getLikelyAdapters.pl, getMappableRegions, getMappingStats.pl, getPartOfPromoter.pl, getPeakTags, getPos.pl, getRandomReads.pl, getSiteConservation.pl, getTopPeaks.pl, gff2pos.pl, gff3ToGenePred, gimme, go2cytoscape.pl, groupSequences.pl, gtfToGenePred, homer, homer2, homerTools, joinFiles.pl, lightning_predict, lightning_train, loadGenome.pl, loadPromoters.pl, makeBigBedMotifTrack.pl, makeBigWig.pl, makeBinaryFile.pl, makeHiCWashUfile.pl, makeMetaGeneProfile.pl, makeMultiWigHub.pl, makeTagDirectory, makeUCSCfile, map-fastq.pl, meme-chip_html_to_tsv, merge2Dbed.pl, mergeData.pl, mergePeaks, momo, motif2Jaspar.pl, motif2Logo.pl, parseGTF.pl, plasma_store_server, pos2bed.pl, prepForR.pl, preparseGenome.pl, profile2seq.pl, qseq2fastq.pl, randRemoveBackground.pl, randomizeGroupFile.pl, randomizeMotifs.pl, removeAccVersion.pl, removeBadSeq.pl, removeOutOfBoundsReads.pl, removePoorSeq.pl, removeRedundantPeaks.pl, renamePeaks.pl, resizePosFile.pl, revoppMotif.pl, rotateHiCmatrix.pl, runHiCpca.pl, sam2spliceJunc.pl, scanMotifGenomeWide.pl, scrambleFasta.pl, selectRepeatBg.pl, seq2profile.pl, subtractBedGraphs.pl, subtractBedGraphsDirectory.pl, tab2fasta.pl, tag2bed.pl, tag2pos.pl, tagDir2HiCsummary.pl, tagDir2bed.pl, tagDir2hicFile.pl, thrift, trawler, weeder2, xsltproc_lite, zipHomerResults.pl, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip |
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GITHUB
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quay.io/biocontainers/anansescanpy |
singularity registry hpc automated addition for anansescanpy |
hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, tjbench, aec, scanpy, numba, pycc, natsort, fonttools, pyftmerge, pyftsubset, ttx, normalizer, tqdm, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug |
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GITHUB
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quay.io/biocontainers/anansnake |
singularity registry hpc automated addition for anansnake |
anansnake, bedToGenePred, bsdcat, bsdcpio, bsdtar, conda2solv, deseq2science, dumpsolv, genePredToBed, genePredToGtf, genomepy, gff3ToGenePred, gtfToGenePred, installcheck, mamba, mamba-package, matplotlib, mergesolv, pysradb, repo2solv, seq2science, testsolv, nosetests-3.9, conda-env, cph, plac_runner.py, yte, docutils, nosetests, pulptest, cbc, clp, vcf_sample_filter.py, vcf_filter.py, vcf_melt, snakemake, snakemake-bash-completion, tabulate, jupyter-trust, faidx, jupyter, jupyter-migrate, jupyter-troubleshoot, my_print_defaults, mysql_config, perror, rst2html4.py |
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GITHUB
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quay.io/biocontainers/anarci |
shpc-registry automated BioContainers addition for anarci |
ANARCI, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat |
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GITHUB
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quay.io/biocontainers/ancestry_hmm-s |
shpc-registry automated BioContainers addition for ancestry_hmm-s |
ahmm-s |
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GITHUB
|
quay.io/biocontainers/anchorwave |
shpc-registry automated BioContainers addition for anchorwave |
anchorwave, anchorwave_avx2, anchorwave_avx512, anchorwave_sse2, anchorwave_sse4.1, atoiindex, bulk-counts, cmetindex, configure, cpuid, dbsnp_iit, ensembl_genes, fa_coords, get-genome, gff3_genes, gff3_introns, gff3_splicesites, gmap.nosimd, gmap.sse42, gmap_build, gmap_cat, gmap_process, gmapindex, gmapl, gmapl.nosimd, gmapl.sse42, gsnap, gsnap.nosimd, gsnap.sse42, gsnapl, gsnapl.nosimd, gsnapl.sse42, gtf_genes, gtf_introns, gtf_splicesites, gtf_transcript_splicesites, gvf_iit, iit_dump, iit_get, iit_store, indexdb_cat, md_coords, psl_genes, psl_introns, psl_splicesites, sam_sort, sc-counts, snpindex, trindex, vcf_iit, velocity-counts, gmap, sdust, paftools.js, minimap2, k8, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/andi |
shpc-registry automated BioContainers addition for andi |
andi, gsl-randist |
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GITHUB
|
quay.io/biocontainers/anglerfish |
shpc-registry automated BioContainers addition for anglerfish |
anglerfish, sdust, paftools.js, minimap2, k8, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/angsd |
shpc-registry automated BioContainers addition for angsd |
NGSadmix, angsd, contamination, contamination2, haploToPlink, ibs, msHOT2glf, msToGlf, ngsPSMC, printIcounts, realSFS, scounts, smartCount, splitgl, supersim, thetaStat, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/aniclustermap |
singularity registry hpc automated addition for aniclustermap |
ANIclustermap, f2py3.11, skani, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fastANI, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/anise_basil |
shpc-registry automated BioContainers addition for anise_basil |
anise, basil, filter_basil.py, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
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quay.io/biocontainers/aniso8601 |
shpc-registry automated BioContainers addition for aniso8601 |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/anndata |
shpc-registry automated BioContainers addition for anndata |
natsort, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, h5clear |
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GITHUB
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quay.io/biocontainers/anndata2ri |
shpc-registry automated BioContainers addition for anndata2ri |
dunamai, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, natsort, mirror_server, mirror_server_stop |
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GITHUB
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quay.io/biocontainers/annembed |
singularity registry hpc automated addition for annembed |
annembed |
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GITHUB
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quay.io/biocontainers/annonars |
singularity registry hpc automated addition for annonars |
annonars |
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GITHUB
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quay.io/biocontainers/annosine2 |
singularity registry hpc automated addition for annosine2 |
RM2Bed.py, annosine2, buildRMLibFromEMBL.pl, buildSummary.pl, corepack, h5tools_test_utils, irf, makeclusterdb, maskFile.pl, wublastToCrossmatch.pl, DateRepeats, DupMasker, ProcessRepeats, RepeatMasker, RepeatProteinMask, calcDivergenceFromAlign.pl, createRepeatLandscape.pl, dupliconToSVG.pl, getRepeatMaskerBatch.pl, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, trfMask, npx, rmblastn, node, npm, blast_report, blastdb_convert, blastdb_path, trf, h5fuse.sh, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl |
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GITHUB
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quay.io/biocontainers/annotsv |
singularity registry hpc automated addition for annotsv |
AnnotSV, INSTALL_annotations.sh, variantconvert, funzip, unzipsfx, zipgrep, zipinfo, unzip, f2py3.11, gff2gff.py, vcf_sample_filter.py, basenc, vcf_filter.py, vcf_melt, b2sum, ls, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp |
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GITHUB
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quay.io/biocontainers/annotwg |
singularity registry hpc automated addition for annotwg |
annotwg, bash, bashbug, cutGenome, egrep, fgrep, grep, gff2gff.py, gawk-5.1.0, basenc, awk, b2sum, gawk, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd |
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GITHUB
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quay.io/biocontainers/anospp-analysis |
singularity registry hpc automated addition for anospp-analysis |
anospp-prep, anospp-qc, tjbench, cutadapt, FastTreeMP, FastTree, fasttree, igzip, pbunzip2, pbzcat, pbzip2, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns, mafft-fftnsi, mafft-ginsi, mafft-homologs.rb, mafft-linsi, mafft-nwns, mafft-nwnsi, mafft-profile |
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GITHUB
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quay.io/biocontainers/ansible |
shpc-registry automated BioContainers addition for ansible |
ansible, ansible-doc, ansible-galaxy, ansible-playbook, ansible-pull, ansible-vault, smtpd.pyc, easy_install-2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5 |
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GITHUB
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quay.io/biocontainers/ant |
shpc-registry automated BioContainers addition for ant |
ant, ant.bat, ant.cmd, antRun, antRun.bat, antRun.pl, antenv.cmd, complete-ant-cmd.pl, envset.cmd, lcp.bat, runant.pl, runant.py, runrc.cmd, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/antarna |
shpc-registry automated BioContainers addition for antarna |
antarna.py, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex |
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GITHUB
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quay.io/biocontainers/antismash-lite |
shpc-registry automated BioContainers addition for antismash-lite |
antismash, download-antismash-databases, hmmalign2, hmmbuild2, hmmc2, hmmcalibrate2, hmmconvert2, hmmemit2, hmmerfm-exactmatch, hmmfetch2, hmmindex2, hmmpfam2, hmmsearch2, less2scss, pyscss, xsltproc_lite, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip |
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GITHUB
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quay.io/biocontainers/antismash |
shpc-registry automated BioContainers addition for antismash |
antismash, download-antismash-databases, hmmalign2, hmmbuild2, hmmc2, hmmcalibrate2, hmmconvert2, hmmemit2, hmmerfm-exactmatch, hmmfetch2, hmmindex2, hmmpfam2, hmmsearch2, less2scss, pyscss, xsltproc_lite, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip |
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GITHUB
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quay.io/biocontainers/anvio-minimal |
shpc-registry automated BioContainers addition for anvio-minimal |
anvi-analyze-synteny, anvi-cluster-contigs, anvi-compute-ani, anvi-compute-completeness, anvi-compute-functional-enrichment, anvi-compute-functional-enrichment-across-genomes, anvi-compute-functional-enrichment-in-pan, anvi-compute-gene-cluster-homogeneity, anvi-compute-genome-similarity, anvi-compute-metabolic-enrichment, anvi-db-info, anvi-delete-collection, anvi-delete-functions, anvi-delete-hmms, anvi-delete-misc-data, anvi-delete-state, anvi-dereplicate-genomes, anvi-display-contigs-stats, anvi-display-functions, anvi-display-metabolism, anvi-display-pan, anvi-display-structure, anvi-estimate-genome-completeness, anvi-estimate-genome-taxonomy, anvi-estimate-metabolism, anvi-estimate-scg-taxonomy, anvi-estimate-trna-taxonomy, anvi-experimental-organization, anvi-export-collection, anvi-export-contigs, anvi-export-functions, anvi-export-gene-calls, anvi-export-gene-coverage-and-detection, anvi-export-items-order, anvi-export-locus, anvi-export-misc-data, anvi-export-splits-and-coverages, anvi-export-splits-taxonomy, anvi-export-state, anvi-export-structures, anvi-export-table, anvi-gen-contigs-database, anvi-gen-fixation-index-matrix, anvi-gen-gene-consensus-sequences, anvi-gen-gene-level-stats-databases, anvi-gen-genomes-storage, anvi-gen-network, anvi-gen-phylogenomic-tree, anvi-gen-structure-database, anvi-gen-variability-matrix, anvi-gen-variability-network, anvi-gen-variability-profile, anvi-get-aa-counts, anvi-get-codon-frequencies, anvi-get-pn-ps-ratio, anvi-get-sequences-for-gene-calls, anvi-get-sequences-for-gene-clusters, anvi-get-sequences-for-hmm-hits, anvi-get-short-reads-from-bam, anvi-get-short-reads-mapping-to-a-gene, anvi-get-split-coverages, anvi-get-tlen-dist-from-bam, anvi-help, anvi-import-collection, anvi-import-functions, anvi-import-items-order, anvi-import-misc-data, anvi-import-state, anvi-import-taxonomy-for-genes, anvi-import-taxonomy-for-layers, anvi-init-bam, anvi-inspect, anvi-interactive, anvi-matrix-to-newick, anvi-mcg-classifier, anvi-merge, anvi-merge-bins, anvi-merge-trnaseq, anvi-meta-pan-genome, anvi-migrate, anvi-oligotype-linkmers, anvi-pan-genome, anvi-plot-trnaseq, anvi-profile, anvi-profile-blitz, anvi-push, anvi-refine, anvi-rename-bins, anvi-report-inversions, anvi-report-linkmers, anvi-run-hmms, anvi-run-interacdome, anvi-run-kegg-kofams, anvi-run-ncbi-cogs, anvi-run-pfams, anvi-run-scg-taxonomy, anvi-run-trna-taxonomy, anvi-run-workflow, anvi-scan-trnas, anvi-script-add-default-collection, anvi-script-augustus-output-to-external-gene-calls, anvi-script-checkm-tree-to-interactive, anvi-script-compute-ani-for-fasta, anvi-script-compute-bayesian-pan-core, anvi-script-enrichment-stats, anvi-script-estimate-genome-size, anvi-script-filter-fasta-by-blast, anvi-script-filter-hmm-hits-table, anvi-script-fix-homopolymer-indels, anvi-script-gen-CPR-classifier, anvi-script-gen-distribution-of-genes-in-a-bin, anvi-script-gen-functions-per-group-stats-output, anvi-script-gen-genomes-file, anvi-script-gen-help-pages, anvi-script-gen-hmm-hits-matrix-across-genomes, anvi-script-gen-programs-network, anvi-script-gen-programs-vignette, anvi-script-gen-pseudo-paired-reads-from-fastq, anvi-script-gen-scg-domain-classifier, anvi-script-gen-short-reads, anvi-script-gen_stats_for_single_copy_genes.R, anvi-script-gen_stats_for_single_copy_genes.py, anvi-script-gen_stats_for_single_copy_genes.sh, anvi-script-get-collection-info, anvi-script-get-coverage-from-bam, anvi-script-get-hmm-hits-per-gene-call, anvi-script-get-primer-matches, anvi-script-merge-collections, anvi-script-permute-trnaseq-seeds, anvi-script-pfam-accessions-to-hmms-directory, anvi-script-predict-CPR-genomes, anvi-script-process-genbank, anvi-script-process-genbank-metadata, anvi-script-reformat-fasta, anvi-script-run-eggnog-mapper, anvi-script-snvs-to-interactive, anvi-script-tabulate, anvi-script-transpose-matrix, anvi-script-variability-to-vcf, anvi-script-visualize-split-coverages, anvi-search-functions, anvi-search-palindromes, anvi-search-sequence-motifs, anvi-self-test, anvi-setup-interacdome, anvi-setup-kegg-kofams, anvi-setup-ncbi-cogs, anvi-setup-pdb-database, anvi-setup-pfams, anvi-setup-scg-taxonomy, anvi-setup-trna-taxonomy, anvi-show-collections-and-bins, anvi-show-misc-data, anvi-split, anvi-summarize, anvi-summarize-blitz, anvi-tabulate-trnaseq, anvi-trnaseq, anvi-update-db-description, anvi-update-structure-database, anvi-upgrade, average_nucleotide_identity.py, bottle.py, delta_filter_wrapper.py, django-admin, django-admin.py, genbank_get_genomes_by_taxon.py, iu-compute-qual-dicts-from-fastq, iu-deinterleave-fastq, iu-demultiplex, iu-fasta-to-fastq, iu-fastq-to-fasta, iu-filter-merged-reads, iu-filter-quality-bokulich, iu-filter-quality-minoche, iu-gen-configs, iu-gen-matching-fastq-files, iu-interleave-fastq, iu-merge-pairs, iu-remove-ids-from-fastq, iu-subsample-fastq, iu-trim-V6-primers, iu-trim-fastq, iu-visualize-mismatch-distribution, iu-visualize-plot-dicts, iu-visualize-qual-dicts, sqlformat, filter-table, spdi2prod, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb |
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GITHUB
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quay.io/biocontainers/anvio |
shpc-registry automated BioContainers addition for anvio |
EukHighConfidenceFilter, anvi-analyze-synteny, anvi-cluster-contigs, anvi-compute-ani, anvi-compute-completeness, anvi-compute-gene-cluster-homogeneity, anvi-compute-genome-similarity, anvi-db-info, anvi-delete-collection, anvi-delete-hmms, anvi-delete-misc-data, anvi-delete-state, anvi-dereplicate-genomes, anvi-display-contigs-stats, anvi-display-pan, anvi-display-structure, anvi-estimate-genome-completeness, anvi-estimate-genome-taxonomy, anvi-estimate-scg-taxonomy, anvi-experimental-organization, anvi-export-collection, anvi-export-contigs, anvi-export-functions, anvi-export-gene-calls, anvi-export-gene-coverage-and-detection, anvi-export-items-order, anvi-export-locus, anvi-export-misc-data, anvi-export-splits-and-coverages, anvi-export-splits-taxonomy, anvi-export-state, anvi-export-structures, anvi-export-table, anvi-gen-contigs-database, anvi-gen-fixation-index-matrix, anvi-gen-gene-consensus-sequences, anvi-gen-gene-level-stats-databases, anvi-gen-genomes-storage, anvi-gen-network, anvi-gen-phylogenomic-tree, anvi-gen-structure-database, anvi-gen-variability-matrix, anvi-gen-variability-network, anvi-gen-variability-profile, anvi-get-aa-counts, anvi-get-codon-frequencies, anvi-get-enriched-functions-per-pan-group, anvi-get-sequences-for-gene-calls, anvi-get-sequences-for-gene-clusters, anvi-get-sequences-for-hmm-hits, anvi-get-short-reads-from-bam, anvi-get-short-reads-mapping-to-a-gene, anvi-get-split-coverages, anvi-help, anvi-import-collection, anvi-import-functions, anvi-import-items-order, anvi-import-misc-data, anvi-import-state, anvi-import-taxonomy-for-genes, anvi-import-taxonomy-for-layers, anvi-init-bam, anvi-inspect, anvi-interactive, anvi-matrix-to-newick, anvi-mcg-classifier, anvi-merge, anvi-merge-bins, anvi-meta-pan-genome, anvi-migrate, anvi-oligotype-linkmers, anvi-pan-genome, anvi-profile, anvi-push, anvi-refine, anvi-rename-bins, anvi-report-linkmers, anvi-run-hmms, anvi-run-ncbi-cogs, anvi-run-pfams, anvi-run-scg-taxonomy, anvi-run-workflow, anvi-scan-trnas, anvi-script-FASTA-to-contigs-db, anvi-script-add-default-collection, anvi-script-calculate-pn-ps-ratio, anvi-script-checkm-tree-to-interactive, anvi-script-compute-ani-for-fasta, anvi-script-estimate-genome-size, anvi-script-filter-fasta-by-blast, anvi-script-gen-CPR-classifier, anvi-script-gen-distribution-of-genes-in-a-bin, anvi-script-gen-hmm-hits-matrix-across-genomes, anvi-script-gen-programs-network, anvi-script-gen-programs-vignette, anvi-script-gen-scg-domain-classifier, anvi-script-gen-short-reads, anvi-script-gen_stats_for_single_copy_genes.R, anvi-script-gen_stats_for_single_copy_genes.py, anvi-script-gen_stats_for_single_copy_genes.sh, anvi-script-get-collection-info, anvi-script-get-coverage-from-bam, anvi-script-get-hmm-hits-per-gene-call, anvi-script-get-short-reads-matching-something, anvi-script-merge-collections, anvi-script-predict-CPR-genomes, anvi-script-process-genbank, anvi-script-process-genbank-metadata, anvi-script-reformat-fasta, anvi-script-run-eggnog-mapper, anvi-script-run-functional-enrichment-stats, anvi-script-snvs-to-interactive, anvi-script-transpose-matrix, anvi-script-variability-to-vcf, anvi-script-visualize-split-coverages, anvi-search-functions, anvi-self-test, anvi-setup-ncbi-cogs, anvi-setup-pdb-database, anvi-setup-pfams, anvi-setup-scg-databases, anvi-show-collections-and-bins, anvi-show-misc-data, anvi-split, anvi-summarize, anvi-threshold-taxonomy, anvi-update-db-description, anvi-update-structure-database, anvi-upgrade, average_nucleotide_identity.py, bottle.py, calc-prorate, centrifuge, centrifuge-BuildSharedSequence.pl, centrifuge-RemoveEmptySequence.pl, centrifuge-RemoveN.pl, centrifuge-build, centrifuge-build-bin, centrifuge-class, centrifuge-compress.pl, centrifuge-download, centrifuge-inspect, centrifuge-inspect-bin, centrifuge-kreport, centrifuge-sort-nt.pl, centrifuge_evaluate.py, centrifuge_simulate_reads.py, cheroot, cherryd, covels-SE, coves-SE, delta_filter_wrapper.py, django-admin, django-admin.py, eufindtRNA, fasta2gsi, genbank_get_genomes_by_taxon.py, iu-compute-qual-dicts-from-fastq, iu-deinterleave-fastq, iu-demultiplex, iu-fasta-to-fastq, iu-fastq-to-fasta, iu-filter-merged-reads, iu-filter-quality-bokulich, iu-filter-quality-minoche, iu-gen-configs, iu-gen-matching-fastq-files, iu-interleave-fastq, iu-merge-pairs, iu-remove-ids-from-fastq, iu-subsample-fastq, iu-trim-V6-primers, iu-trim-fastq, iu-visualize-mismatch-distribution, iu-visualize-plot-dicts, iu-visualize-qual-dicts, sqlformat, sstofa, tRNAscan-SE, tRNAscan-SE.conf, trnascan-1.4, readal, statal, trimal, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, megahit, megahit_toolkit, bl2seq, blastall |
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GITHUB
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quay.io/biocontainers/any2fasta |
shpc-registry automated BioContainers addition for any2fasta |
any2fasta, perl5.32.0, streamzip |
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GITHUB
|
quay.io/biocontainers/aodp |
shpc-registry automated BioContainers addition for aodp |
aodp, x86_64-conda_cos7-linux-gnu-ld, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches |
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GITHUB
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quay.io/biocontainers/aplanat |
shpc-registry automated BioContainers addition for aplanat |
aplanat, font-awesome-to-png, icon-font-to-png, bokeh, markdown_py, f2py3.10, chardetect, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10 |
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GITHUB
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quay.io/biocontainers/apoc |
shpc-registry automated BioContainers addition for apoc |
apoc |
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GITHUB
|
quay.io/biocontainers/apollo |
shpc-registry automated BioContainers addition for apollo |
arrow, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
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GITHUB
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quay.io/biocontainers/appspam |
shpc-registry automated BioContainers addition for appspam |
appspam |
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GITHUB
|
quay.io/biocontainers/aprfinder |
singularity registry hpc automated addition for aprfinder |
aprfinder |
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GITHUB
|
quay.io/biocontainers/apscale |
singularity registry hpc automated addition for apscale |
apscale, csv-import, demultiplexer, orc-memory, orc-scan, psghelp, psgissue, psgmain, psgsettings, psgupgrade, psgver, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, cutadapt, vsearch, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, protoc, tqdm, f2py3.9 |
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GITHUB
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quay.io/biocontainers/apt-probeset-summarize |
shpc-registry automated BioContainers addition for apt-probeset-summarize |
apt-probeset-summarize |
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GITHUB
|
quay.io/biocontainers/aptardi |
shpc-registry automated BioContainers addition for aptardi |
aptardi, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, pyrsa-decrypt, pyrsa-encrypt |
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GITHUB
|
quay.io/biocontainers/apu-label-propagation |
singularity registry hpc automated addition for apu-label-propagation |
apu-label-propagation |
|
GITHUB
|
quay.io/biocontainers/aquamis |
shpc-registry automated BioContainers addition for aquamis |
aquamis, aquamis_setup.sh, bracken, bracken-build, combine_bracken_outputs.py, confindr, confindr.py, confindr_create_db, confindr_database_setup, create_sampleSheet.sh, est_abundance.py, filter_json.py, generate_kmer_distribution.py, genson, helper_functions.py, icarus.py, kma, kma_index, kma_shm, kma_update, kmer2read_distr, kraken2, kraken2-build, kraken2-inspect, lighter, metaquast, metaquast.py, mlst, parse_json.py, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, shovill, skesa, taxonkit, write_QC_report.Rmd, write_report.Rmd, kmutate.sh, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, rsync-ssl, runhmm.sh, circos, circos.exe, compile.bat, compile.make |
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GITHUB
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quay.io/biocontainers/aquila |
shpc-registry automated BioContainers addition for aquila |
Aquila_assembly_based_variants_call, Aquila_clean, Aquila_phasing_all_variants, Aquila_step0_sortbam, Aquila_step0_sortbam_multilibs, Aquila_step1, Aquila_step1_multilibs, Aquila_step2, paftools.js, minimap2, k8, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
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GITHUB
|
quay.io/biocontainers/aquila_stlfr |
shpc-registry automated BioContainers addition for aquila_stlfr |
Aquila_stLFR_assembly_based_variants_call, Aquila_stLFR_clean, Aquila_stLFR_fastq_preprocess, Aquila_stLFR_phasing_all_variants, Aquila_stLFR_step1, Aquila_stLFR_step2, Aquila_step0_sortbam_hybrid, Aquila_step1_hybrid, paftools.js, minimap2, k8, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
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GITHUB
|
quay.io/biocontainers/aquila_sv |
shpc-registry automated BioContainers addition for aquila_sv |
AquilaSV_step1, AquilaSV_step2, AquilaSV_step3, sdust, paftools.js, minimap2, k8, fasta-sanitize.pl, plot-ampliconstats, f2py3.9, ace2sam, blast2sam.pl, bowtie2sam.pl |
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GITHUB
|
quay.io/biocontainers/aquila_umap |
shpc-registry automated BioContainers addition for aquila_umap |
aquila_umap, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, 2to3-3.7 |
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GITHUB
|
quay.io/biocontainers/aquilasv |
shpc-registry automated BioContainers addition for aquilasv |
AquilaSV_step1, AquilaSV_step2, AquilaSV_step3, cds-mapping-stats, cds-subgraphs, mag-improve, spades-convert-bin-to-fasta, spades-gsimplifier, spades-kmer-estimating, spades-read-filter, spaligner, spades-bwa, spades-core |
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GITHUB
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quay.io/biocontainers/aragorn |
shpc-registry automated BioContainers addition for aragorn |
aragorn |
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GITHUB
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quay.io/biocontainers/arb-bio-devel |
shpc-registry automated BioContainers addition for arb-bio-devel |
DrawGram.jar, DrawTree.jar, arb, arb_2_ascii, arb_2_bin, arb_a2ps, arb_bootstrap, arb_clean, arb_consensus_tree, arb_convert_aln, arb_db_server, arb_dist, arb_dnapars, arb_dnarates, arb_echo, arb_edit4, arb_export_rates, arb_export_tree, arb_fastdnaml, arb_flush_mem, arb_gene_probe, arb_help2xml, arb_help_useredit.sh, arb_ign, arb_installubuntu4arb.sh, arb_launcher, arb_ludwig, arb_macsetup, arb_message, arb_naligner, arb_name_server, arb_nexus2newick.awk, arb_notify, arb_ntree, arb_panic, arb_pars, arb_phylo, arb_phyml, arb_primer, arb_probe, arb_proml, arb_proto_2_xsub, arb_protpars, arb_pt_server, arb_raxml, arb_read_tree, arb_readlink, arb_readseq, arb_remote, arb_repair, arb_replace, arb_rexec, arb_rnacma, arb_sed, arb_sleep, arb_textedit, arb_textprint, arb_trace, arb_treegen, arb_wait, arb_wetc, arb_who, clique, consense, contml, contrast, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, dollop, dolmove, dolpenny, drawgram, drawgram_gui, drawtree, drawtree_gui, fig2dev, fig2ps2tex, fitch, gendist, kitsch, mb, mb-mpi, mix, move, mwm, neighbor, ompi-dvm, ompi-ps, ompi-top, orte-dvm, orte-ps, orte-top, pars, penny, phylip, phyml, phyml-mpi, pic2tpic, proml, promlk, protdist, protpars, prun, restdist, restml, retree, seqboot, transfig, treedist, uil, xfig, xmbind, gnuplot, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, FastTree-2.1.10.c, oshCC, oshc++ |
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GITHUB
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quay.io/biocontainers/arb-bio-tools |
shpc-registry automated BioContainers addition for arb-bio-tools |
arb_2_ascii, arb_2_bin, arb_a2ps, arb_consensus_tree, arb_convert_aln, arb_db_server, arb_dnarates, arb_export_rates, arb_export_tree, arb_flush_mem, arb_gene_probe, arb_help2xml, arb_message, arb_naligner, arb_name_server, arb_notify, arb_primer, arb_probe, arb_proto_2_xsub, arb_pt_server, arb_read_tree, arb_readseq, arb_replace, arb_rnacma, arb_treegen, gio-launch-desktop |
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GITHUB
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quay.io/biocontainers/arb-bio |
shpc-registry automated BioContainers addition for arb-bio |
DrawGram.jar, DrawTree.jar, arb, arb_2_ascii, arb_2_bin, arb_a2ps, arb_bootstrap, arb_clean, arb_consensus_tree, arb_convert_aln, arb_db_server, arb_dist, arb_dnapars, arb_dnarates, arb_echo, arb_edit4, arb_export_rates, arb_export_tree, arb_fastdnaml, arb_flush_mem, arb_gene_probe, arb_help2xml, arb_help_useredit.sh, arb_ign, arb_installubuntu4arb.sh, arb_launcher, arb_ludwig, arb_macsetup, arb_message, arb_naligner, arb_name_server, arb_nexus2newick.awk, arb_notify, arb_ntree, arb_panic, arb_pars, arb_phylo, arb_phyml, arb_primer, arb_probe, arb_proml, arb_proto_2_xsub, arb_protpars, arb_pt_server, arb_raxml, arb_read_tree, arb_readlink, arb_readseq, arb_remote, arb_repair, arb_replace, arb_rexec, arb_rnacma, arb_sed, arb_sleep, arb_textedit, arb_textprint, arb_trace, arb_treegen, arb_wait, arb_wetc, arb_who, clique, consense, contml, contrast, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, dollop, dolmove, dolpenny, drawgram, drawgram_gui, drawtree, drawtree_gui, fig2dev, fig2ps2tex, fitch, gendist, kitsch, mb, mb-mpi, mix, move, mwm, neighbor, ompi-dvm, ompi-ps, ompi-top, orte-dvm, orte-ps, orte-top, pars, penny, phylip, phyml, phyml-mpi, pic2tpic, proml, promlk, protdist, protpars, prun, restdist, restml, retree, seqboot, transfig, treedist, uil, xfig, xmbind, gnuplot, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, FastTree-2.1.10.c, oshCC, oshc++ |
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GITHUB
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quay.io/biocontainers/arborator |
singularity registry hpc automated addition for arborator |
arborator, gas, profile_dists, cpuinfo, h5tools_test_utils, cmtime, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, mckey, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, ucmatose, udaddy, udpong, io_demo |
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GITHUB
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quay.io/biocontainers/arboreto |
shpc-registry automated BioContainers addition for arboreto |
dask-scheduler, dask-ssh, dask-worker, bokeh, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/arcas-hla |
shpc-registry automated BioContainers addition for arcas-hla |
arcasHLA, git-lfs, kallisto, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
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GITHUB
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quay.io/biocontainers/archer |
shpc-registry automated BioContainers addition for archer |
archer |
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GITHUB
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quay.io/biocontainers/architeuthis |
singularity registry hpc automated addition for architeuthis |
architeuthis, taxonkit |
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GITHUB
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quay.io/biocontainers/arcs |
shpc-registry automated BioContainers addition for arcs |
arcs, arcs-make, long-to-linked-pe |
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GITHUB
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quay.io/biocontainers/arcsv |
singularity registry hpc automated addition for arcsv |
ArcSV, BKinCheck.pl, BKinCheck_len.pl, bed2pos, createClip.sh, extractBK_bam.sh, extractSoftclipped, fastqToBKS.pl, filter_PopSpec_AF.sh, find_record.sh, format_header.txt, gen_pop_bed.sh, generateBKSinArc.sh, generateBKSinArc_each.sh, generateBKSinBam.pl, generateBKSinBam.sh, generateBKSinBam_each.sh, getSoftclippedAndNearbySeq.py, getfastq.sh, pos2bed, transDeepMEI2BK.sh, gff2gff.py, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, build_env_setup.sh, shiftBed, conda_build.sh, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed |
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GITHUB
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quay.io/biocontainers/arem |
shpc-registry automated BioContainers addition for arem |
arem, elandexport2bed, elandmulti2bed, elandresult2bed, wignorm, sam2bed, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/argh |
shpc-registry automated BioContainers addition for argh |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/argnorm |
singularity registry hpc automated addition for argnorm |
argnorm, pronto, py.test, pytest, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/argopy |
singularity registry hpc automated addition for argopy |
h5tools_test_utils, nc3tonc4, nc4tonc3, ncinfo, httpx, h5fuse.sh, h5delete, zipcmp, zipmerge, ziptool, 2to3-3.12, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff |
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GITHUB
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quay.io/biocontainers/argparse2tool |
shpc-registry automated BioContainers addition for argparse2tool |
argparse2tool, argparse2tool_check_path, futurize, pasteurize, xslt-config, xsltproc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/args_oap |
singularity registry hpc automated addition for args_oap |
args_oap, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, diamond, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl |
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GITHUB
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quay.io/biocontainers/argutils |
shpc-registry automated BioContainers addition for argutils |
2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/aria2 |
shpc-registry automated BioContainers addition for aria2 |
aria2c |
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GITHUB
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quay.io/biocontainers/ariba |
shpc-registry automated BioContainers addition for ariba |
ariba, bwa-spades, corrector, dipspades, dipspades.py, hammer, ionhammer, scaffold_correction, spades, fastaq, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div, cd-hit-div.pl, cd-hit-est-2d, cd-hit-para.pl, clstr2tree.pl |
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GITHUB
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quay.io/biocontainers/array-as-vcf |
shpc-registry automated BioContainers addition for array-as-vcf |
aav, array-as-vcf, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/arriba |
shpc-registry automated BioContainers addition for arriba |
arriba, convert_fusions_to_vcf.sh, draw_fusions.R, extract_fusion-supporting_alignments.sh, quantify_virus_expression.sh, run_arriba.sh, run_arriba_on_prealigned_bam.sh, STAR, STARlong, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long |
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GITHUB
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quay.io/biocontainers/arrow |
shpc-registry automated BioContainers addition for arrow |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/art |
shpc-registry automated BioContainers addition for art |
art_454, art_SOLiD, art_illumina |
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GITHUB
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quay.io/biocontainers/artemis |
shpc-registry automated BioContainers addition for artemis |
act, art, bamview, dnaplotter, writedb_entry, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/artic-porechop |
shpc-registry automated BioContainers addition for artic-porechop |
porechop, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
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quay.io/biocontainers/artic-tools |
shpc-registry automated BioContainers addition for artic-tools |
artic-tools, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/artic |
shpc-registry automated BioContainers addition for artic |
align_trim, align_trim_n, artic, artic-tools, artic_fasta_header, artic_get_stats, artic_make_depth_mask, artic_mask, artic_vcf_filter, artic_vcf_merge, check_compression, compress_fast5, demux_fast5, fast5_subset, hdf2tf.py, longshot, margin_cons, margin_cons_medaka, medaka, medaka_consensus, medaka_counts, medaka_data_path, medaka_haploid_variant, medaka_version_report, mini_align, multi_to_single_fast5, nanopolish, nanopolish_makerange.py, nanopolish_merge.py, porechop, rich-click, single_to_multi_fast5, vcfextract, whatshap, multiqc, minimap2.py, racon, rampler, racon_wrapper, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin |
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GITHUB
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quay.io/biocontainers/arvados-cli |
shpc-registry automated BioContainers addition for arvados-cli |
arv, arv-crunch-job, arv-run-pipeline-instance, arv-tag, google-api, launchy, erb, gem, irb, rake, rdoc, ri, ruby, easy_install-3.5, 2to3-3.5, idle3.5 |
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GITHUB
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quay.io/biocontainers/arvados-cwl-runner |
shpc-registry automated BioContainers addition for arvados-cwl-runner |
arv-copy, arv-federation-migrate, arv-get, arv-keepdocker, arv-ls, arv-migrate-docker19, arv-normalize, arv-put, arv-ws, arvados-cwl-runner, bagit.py, cwl-runner, prov-compare, prov-convert, cwltool, schema-salad-doc, schema-salad-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, doesitcache, coloredlogs |
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GITHUB
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quay.io/biocontainers/arvados-python-client |
shpc-registry automated BioContainers addition for arvados-python-client |
arv-copy, arv-federation-migrate, arv-get, arv-keepdocker, arv-ls, arv-migrate-docker19, arv-normalize, arv-put, arv-ws, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, futurize, pasteurize, 2to3-3.8, idle3.8 |
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GITHUB
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quay.io/biocontainers/ascat |
shpc-registry automated BioContainers addition for ascat |
|
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GITHUB
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quay.io/biocontainers/asciigenome |
shpc-registry automated BioContainers addition for asciigenome |
ASCIIGenome, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/asgal |
singularity registry hpc automated addition for asgal |
SpliceAwareAligner, asgal, asgal_BitVector.py, asgal_SplicingGraph.py, asgal_detectEvents.py, asgal_formatSAM.py, asgal_utils.py, dimacs-solver, dimacs-to-lgf, lemon-0.x-to-1.x.sh, lgf-gen, salmon, gffutils-cli, cbc, clp, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, fasta-sanitize.pl, plot-ampliconstats, f2py3.10, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite |
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GITHUB
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quay.io/biocontainers/ashlar |
singularity registry hpc automated addition for ashlar |
aomdec, aomenc, ashlar, dav1d, make_alignment_movie, preview_slide, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, aec, imageio_download_bin, imageio_remove_bin, skivi, fitscopy, fpack, funpack, imcopy, smem, cups-config, ippeveprinter, ipptool, fonttools, pyftmerge, pyftsubset |
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GITHUB
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quay.io/biocontainers/ashleys-qc |
singularity registry hpc automated addition for ashleys-qc |
ashleys, py.test, pytest, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/askocli |
shpc-registry automated BioContainers addition for askocli |
askocli, chardetect, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/asn2gb |
shpc-registry automated BioContainers addition for asn2gb |
asn2gb, idn |
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GITHUB
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quay.io/biocontainers/aspera-cli |
singularity registry hpc automated addition for aspera-cli |
ascli, ascp, asession, aspera-license, rbs, rdbg, typeprof, racc, bundle, bundler, gdbm_dump, gdbm_load, gdbmtool, erb, gem, irb, rake, rdoc, ri, ruby |
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GITHUB
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quay.io/biocontainers/asqcan |
shpc-registry automated BioContainers addition for asqcan |
asqcan, blobtools, blobtools-build_nodesdb, icarus.py, metaquast, metaquast.py, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, circos, circos.exe, compile.bat, compile.make, gddiag, glimmerhmm, glimmhmm.pl, list.modules, test.modules, trainGlimmerHMM |
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GITHUB
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quay.io/biocontainers/assemblerflow |
shpc-registry automated BioContainers addition for assemblerflow |
assemblerflow, nextflow, nextflow.bak, giffilter, gifsponge, gifecho, gifinto, basenc, b2sum, base32, base64, basename, cat |
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GITHUB
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quay.io/biocontainers/assembly-scan |
shpc-registry automated BioContainers addition for assembly-scan |
assembly-scan, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/assembly-stats |
shpc-registry automated BioContainers addition for assembly-stats |
assembly-stats |
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GITHUB
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quay.io/biocontainers/assembly_finder |
singularity registry hpc automated addition for assembly_finder |
ascli, ascp, asession, aspera-license, assembly_finder, rbs, rdbg, typeprof, racc, bundle, bundler, mpg123, mpg123-id3dump, mpg123-strip, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, libgcrypt-config, mpicalc, yat2m, gdbm_dump, gdbm_load, gdbmtool, lame, erb, gem, irb, rake, rdoc, ri, ruby |
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GITHUB
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quay.io/biocontainers/assemblycomparator2 |
singularity registry hpc automated addition for assemblycomparator2 |
asscom2, bsdunzip, eido, jsondiff, jsonpatch, jsonpointer, protoc-24.3.0, mamba-package, conda2solv, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, bsdcat, bsdcpio, bsdtar, conda-env, cph, markdown-it, stone, yte, plac_runner.py, docutils, pulptest, cbc, clp, humanfriendly, snakemake, snakemake-bash-completion, jp.py |
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GITHUB
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quay.io/biocontainers/assemblytics |
shpc-registry automated BioContainers addition for assemblytics |
Assemblytics, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot |
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GITHUB
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quay.io/biocontainers/astalavista |
shpc-registry automated BioContainers addition for astalavista |
astalavista, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/aster |
singularity registry hpc automated addition for aster |
asterisk, astral, astral-pro |
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GITHUB
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quay.io/biocontainers/astral-tree |
singularity registry hpc automated addition for astral-tree |
astral, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs, pack200, rmic, rmid, unpack200, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo |
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GITHUB
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quay.io/biocontainers/astropy |
shpc-registry automated BioContainers addition for astropy |
fits2bitmap, fitscheck, fitsdiff, fitsheader, fitsinfo, samp_hub, showtable, volint, wcslint, py.test, pytest, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7 |
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GITHUB
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quay.io/biocontainers/atactk |
shpc-registry automated BioContainers addition for atactk |
make_cut_matrix, make_midpoint_matrix, measure_features, measure_signal, plot_aggregate_cut_matrix.R, plot_aggregate_midpoint_matrix.R, plot_signal.R, trim_adapters, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, x86_64-conda-linux-gnu-gfortran.bin, pyvenv |
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GITHUB
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quay.io/biocontainers/ataqv |
shpc-registry automated BioContainers addition for ataqv |
ataqv, mkarv, srvarv, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
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GITHUB
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quay.io/biocontainers/athena_meta |
shpc-registry automated BioContainers addition for athena_meta |
Makefile, Makefile.am, Makefile.in, athena-meta, bazel-scan.py, fa2fq, fa2fq.o, filter_blat, filter_blat.o, filter_contigs, filter_contigs.o, filterfa, filterfa.o, flye, flye-assemble, flye-minimap2, flye-polish, flye-repeat, fq2fa, fq2fa.o, idba, idba.o, idba_hybrid, idba_hybrid.o, idba_subasm, idba_subasm.o, idba_tran, idba_tran.o, idba_tran_test, idba_tran_test.o, idba_ud, idba_ud.o, ipcluster, ipcontroller, ipengine, iptest2, ipython2, parallel_blat, parallel_blat.o, parallel_rna_blat, parallel_rna_blat.o, print_graph, print_graph.o, raw_n50, raw_n50.o, run-unittest.py, sample_reads, sample_reads.o, scaffold, scaffold.o, scan.py, shuffle_reads, shuffle_reads.o, sim_reads, sim_reads.o, sim_reads_tran, sim_reads_tran.o, sort_psl, sort_psl.o, sort_reads, sort_reads.o, split_fa, split_fa.o, split_fq, split_fq.o, split_scaffold, split_scaffold.o, test.o, validate_blat, validate_blat_parallel, validate_blat_parallel_local, validate_blat_parallel_rna, validate_component, validate_component.o, validate_contigs_blat, validate_contigs_blat.o, validate_contigs_mummer, validate_contigs_mummer.o, validate_mummer, validate_reads_blat, validate_reads_blat.o, validate_rna, validate_rna.o, jupyter-kernel, jupyter-kernelspec, jupyter-run, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py |
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GITHUB
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quay.io/biocontainers/atlas-data-import |
shpc-registry automated BioContainers addition for atlas-data-import |
data_import_post_install_tests.bats, data_import_post_install_tests.sh, get_experiment_data.R, import_classification_data.R, metadata_conda_debug.yaml, build_env_setup.sh, conda_build.sh, x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/atlas-fastq-provider |
shpc-registry automated BioContainers addition for atlas-fastq-provider |
abi-dump.2.11.0, abi-load, abi-load.2, abi-load.2.11.0, align-cache.2.11.0, align-info.2.11.0, atlas-fastq-provider-config.sh, atlas-fastq-provider-functions.sh, atlas-fastq-provider-post-install-tests.sh, bam-load.2.11.0, bam2fastq, bam_add_tags, bam_annotate.sh, bam_umi_count, bash, bashbug, cache-mgr.2.11.0, ccextract, ccextract.2, ccextract.2.11.0, cg-load.2.11.0, deinterleave_fastq.sh, fasterq-dump-orig.2.11.0, fasterq-dump.2.11.0, fastq-dump-orig.2.11.0, fastq-dump.2.11.0, fastq-load, fastq-load.2, fastq-load.2.11.0, fastq2bam, fastq_filter_n, fastq_filterpair, fastq_info, fastq_not_empty, fastq_num_reads, fastq_pre_barcodes, fastq_split_interleaved, fastq_tests, fastq_trim_poly_at, fastq_truncate, fastq_validator.sh, fetchEnaLibraryFastqs.sh, fetchFastq.sh, helicos-load, helicos-load.2, helicos-load.2.11.0, illumina-dump.2.11.0, illumina-load, illumina-load.2, illumina-load.2.11.0, initialiseEnaProbe.sh, kar.2.11.0, kdbmeta.2.11.0, kget.2.11.0, latf-load.2.11.0, md5cp.2.11.0, pacbio-load, pacbio-load.2, pacbio-load.2.11.0, pacbio-loadxml, pacbio-loadxml.2, pacbio-loadxml.2.11.0, prefetch-orig.2.11.0, prefetch.2.11.0, rcexplain.2.11.0, read-filter-redact.2.11.0, sam-dump-orig.2.11.0, sam-dump.2.11.0, sff-dump.2.11.0, sff-load, sff-load.2, sff-load.2.11.0, sra-pileup-orig.2.11.0, sra-pileup.2.11.0, sra-sort-cg.2.11.0, sra-sort.2.11.0, sra-stat.2.11.0, srapath-orig.2.11.0, srapath.2.11.0, sratools.2.11.0, srf-load, srf-load.2, srf-load.2.11.0, test-sra.2.11.0, validateUri.sh, vdb-config.2.11.0, vdb-copy.2.11.0, vdb-decrypt.2.11.0, vdb-diff.2.11.0, vdb-dump-orig.2.11.0, vdb-dump.2.11.0, vdb-encrypt.2.11.0, vdb-lock.2.11.0, vdb-passwd.2.11.0, vdb-unlock.2.11.0, vdb-validate.2.11.0, align-cache.2, md5cp.2, read-filter-redact.2, sra-sort-cg.2, vdb-diff.2, align-cache, fasterq-dump-orig, fastq-dump-orig, md5cp, prefetch-orig |
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GITHUB
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quay.io/biocontainers/atlas-gene-annotation-manipulation |
shpc-registry automated BioContainers addition for atlas-gene-annotation-manipulation |
gtf2featureAnnotation.R |
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GITHUB
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quay.io/biocontainers/atlas-metadata-validator |
shpc-registry automated BioContainers addition for atlas-metadata-validator |
atlas_validation.py, chardetect, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/atlas |
shpc-registry automated BioContainers addition for atlas |
atlas |
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GITHUB
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quay.io/biocontainers/atropos |
shpc-registry automated BioContainers addition for atropos |
atropos, tqdm, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/attotree |
singularity registry hpc automated addition for attotree |
attotree, quicktree, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/augur |
shpc-registry automated BioContainers addition for augur |
augur, dsdp5, treetime, vcftools, iqtree, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, FastTree-2.1.10.c, FastTreeMP, cmpfillin |
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GITHUB
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quay.io/biocontainers/augustus |
shpc-registry automated BioContainers addition for augustus |
PF00225_full.blocks.txt, PF00225_seed.blocks.txt, SplicedAlignment.pm, aa2nonred.pl, add_name_to_gff3.pl, aln2wig, augustify.py, augustus, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, bam2wig, bamToWig.py, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, cdbfasta, cdbyank, cegma2gff.pl, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, compare_masking.pl, compileSpliceCands, computeFlankingRegion.pl, createAugustusJoblist.pl, del_from_prfl.pl, evalCGP.pl, eval_dualdecomp.pl, eval_multi_gtf.pl, executeTestCGP.py, exonerate2hints.pl, exoniphyDb2hints.pl, extractAnno.py, extractTranscriptEnds.pl, filter-ppx.pl, filterGenes.pl, filterGenesIn.pl, filterGenesIn_mRNAname.pl, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, findGffNamesInFasta.pl, findRepetitiveProtSeqs.py, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, getAnnoFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, getSeq, get_loci_from_gb.pl, gff2gbSmallDNA.pl, gff2ps_mycustom, gffGetmRNA.pl, gp2othergp.pl, gtf2aa.pl, gtf2gff.pl, gth2gtf.pl, hal2maf_split.pl, helpMod.pm, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, load2sqlitedb, lp_solve, maf2conswig.pl, makeMatchLists.pl, makeUtrTrainingSet.pl, maskNregions.pl, merge_masking.pl, moveParameters.pl, msa2prfl.pl, new_species.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, peptides2alternatives.pl, peptides2hints.pl, phastconsDB2hints.pl, polyA2hints.pl, pp_simScore, prints2prfl.pl, pslMap.pl, randomSplit.pl, rename_species.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, samMap.pl, scipiogff2gff.pl, setStopCodonFreqs.pl, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, splitMfasta.pl, split_wiggle.pl, stringtie2fa.py, summarizeACGTcontent.pl, transMap2hints.pl, uniquePeptides.pl, utrgff2gbrowse.pl, utrrnaseq, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, yaml2gff.1.4.pl, bam2hints, etraining, fastBlockSearch, filterBam, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign, twoBitInfo, faToTwoBit |
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GITHUB
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quay.io/biocontainers/auriclass |
singularity registry hpc automated addition for auriclass |
auriclass, dmypy, mypy, mypyc, stubgen, stubtest, pyfastx, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, py.test, pytest, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/auspice |
shpc-registry automated BioContainers addition for auspice |
auspice, corepack, node, npm, npx |
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GITHUB
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quay.io/biocontainers/authentict |
singularity registry hpc automated addition for authentict |
AuthentiCT, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, normalizer, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl |
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GITHUB
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quay.io/biocontainers/autodock-vina |
shpc-registry automated BioContainers addition for autodock-vina |
vina, vina_split |
|
GITHUB
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quay.io/biocontainers/autodock |
shpc-registry automated BioContainers addition for autodock |
autodock4, autodock4.omp |
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GITHUB
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quay.io/biocontainers/autogenes |
shpc-registry automated BioContainers addition for autogenes |
get_objgraph, undill, natsort, mirror_server, mirror_server_stop, f2py3.9, opj_compress, opj_decompress, opj_dump, h5clear |
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GITHUB
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quay.io/biocontainers/autogrid |
singularity registry hpc automated addition for autogrid |
autogrid4 |
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GITHUB
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quay.io/biocontainers/autolog |
shpc-registry automated BioContainers addition for autolog |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
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quay.io/biocontainers/automappa |
singularity registry hpc automated addition for automappa |
automappa, autometa-bedtools-genomecov, autometa-benchmark, autometa-binning, autometa-binning-ldm, autometa-binning-ldm-loginfo, autometa-binning-summary, autometa-config, autometa-coverage, autometa-download-dataset, autometa-hmmsearch-filter, autometa-kmers, autometa-length-filter, autometa-markers, autometa-orfs, autometa-taxonomy, autometa-taxonomy-lca, autometa-taxonomy-majority-vote, autometa-unclustered-recruitment, autometa-update-databases, dash-generate-components, dash-update-components, editorconfig, gdown, js-beautify, renderer, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, doesitcache, flask, diamond, ipython3, parsort, ipython, cygdb, cython, cythonize, numba, pycc, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh |
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GITHUB
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quay.io/biocontainers/autometa |
shpc-registry automated BioContainers addition for autometa |
autometa, autometa-bedtools-genomecov, autometa-benchmark, autometa-binning, autometa-binning-ldm, autometa-binning-ldm-loginfo, autometa-binning-summary, autometa-config, autometa-coverage, autometa-download-dataset, autometa-hmmsearch-filter, autometa-kmers, autometa-length-filter, autometa-markers, autometa-orfs, autometa-taxonomy, autometa-taxonomy-lca, autometa-taxonomy-majority-vote, autometa-unclustered-recruitment, autometa-update-databases, gdown, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, doesitcache, ipython3, diamond, parsort |
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GITHUB
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quay.io/biocontainers/aviary |
singularity registry hpc automated addition for aviary |
Xcalcmem.sh, aviary, bloomfilterparser.sh, bsdcat, bsdcpio, bsdtar, conda2solv, dumpsolv, installcheck, mamba, mamba-package, mergesolv, repo2solv, testsolv, kmutate.sh, runhmm.sh, stone, conda-env, cph, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, plac_runner.py, sketchblacklist2.sh, splitribo.sh, yte, addssu.sh, adjusthomopolymers.sh, analyzeaccession.sh, analyzegenes.sh, applyvariants.sh, bbcms.sh, bloomfilter.sh, callgenes.sh, comparegff.sh |
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GITHUB
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quay.io/biocontainers/avro-cwl |
shpc-registry automated BioContainers addition for avro-cwl |
avro, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/avro-python2 |
shpc-registry automated BioContainers addition for avro-python2 |
avro, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/avro-python3 |
shpc-registry automated BioContainers addition for avro-python3 |
avro, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/avro |
shpc-registry automated BioContainers addition for avro |
avro, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/awscli |
shpc-registry automated BioContainers addition for awscli |
aws, aws.cmd, aws_completer, aws_zsh_completer.sh, pyrsa-decrypt-bigfile, pyrsa-encrypt-bigfile, jp.py, easy_install-3.5, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify |
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GITHUB
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quay.io/biocontainers/axiome |
shpc-registry automated BioContainers addition for axiome |
axiome, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/b2b-utils |
singularity registry hpc automated addition for b2b-utils |
DrawGram.jar, DrawTree.jar, TMalign, TMscore, attr, balsam, bam2consensus, bgzip.pl, blast2diamond, boot2frac, bstats, bundle, bundler, clique, comppair, consense, contml, contrast, conus_compare, conus_train, dca, decode_sam_flag, dialign-tx, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, dollop, dolmove, dolpenny, drawgram, drawgram_gui, drawtree, drawtree_gui, dumpsexp, fakealigner, faketree, famsa, fasta2nexus, fasta2phylip, fasttreeMP, fitch, fq_deinterleave, fq_interleave, frag_lens, gb2fasta, gendist, getfattr, gpg-error, gpgrt-config, guess_ill_instrument, hmac256, hmmeralign, hmmerbuild, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, hyperopt-mongo-worker, jackd, kalign, kitsch, lame, libgcrypt-config, lprodump, lrelease-pro, lstopo, lstopo-no-graphics, lupdate-pro, make_pscores.pl, matplotlib, meshdebug, minimeta, mix, move, mpg123, mpg123-id3dump, mpg123-strip, mpicalc, mustang, ncbi_blast_update, neighbor, opal.jar, orc-bugreport, orcc, out123, pModel, pa-info, pacat, pacmd, pactl, padaligner, padsp, pamon, paplay, parec, parecord, pars, pasuspender, penny, phylip, poa, probcons, probconsRNA, proml, promlk, protdist, protpars, pulseaudio, qbin, qmlformat, qmltime, qmltyperegistrar, qpaeq, racc, randtree, raxml, raxmlp, rbs, rdbg, restdist, restml, retree, rm_chim, rm_gaps, run_pasta.py, run_pasta_gui.py, run_seqtools.py, sap, scompare, seq_diff, seqboot, setfattr, sfold, shrink_bedgraph, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, strain_ml, summarize_assembly, sync_reads, tracegen, treedist, typeprof, uc, yat2m, clustalo, flac, gdbm_dump, gdbm_load, gdbmtool, metaflac, prank, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, aec, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb |
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GITHUB
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quay.io/biocontainers/b2btools |
shpc-registry automated BioContainers addition for b2btools |
torchrun, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, protoc, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli |
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GITHUB
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quay.io/biocontainers/bacgwasim |
shpc-registry automated BioContainers addition for bacgwasim |
BacGWASim, SimBac, gcta64, plink, snp-sites, stone, dendropy-format, x86_64-conda-linux-gnu-pkg-config, pulptest, Magick++-config, MagickCore-config, MagickWand-config, animate, composite |
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GITHUB
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quay.io/biocontainers/backports.csv |
shpc-registry automated BioContainers addition for backports.csv |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/backports.unittest_mock |
shpc-registry automated BioContainers addition for backports.unittest_mock |
pbr, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config |
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GITHUB
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quay.io/biocontainers/backspinpy |
shpc-registry automated BioContainers addition for backspinpy |
backspin, futurize, pasteurize, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
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quay.io/biocontainers/bacphlip |
shpc-registry automated BioContainers addition for bacphlip |
bacphlip, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/bactopia-assembler |
singularity registry hpc automated addition for bactopia-assembler |
assembly-scan, bactopia-assembler, check_compression, compress_fast5, coronaspades.py, demux_fast5, dragonflye, fast5_subset, flye, flye-minimap2, flye-modules, flye-samtools, hdf2tf.py, lighter, medaka, medaka_consensus, medaka_counts, medaka_data_path, medaka_haploid_variant, medaka_version_report, metaplasmidspades.py, metaviralspades.py, mini_align, miniasm, minidot, multi_to_single_fast5, nanoq, polypolish, polypolish_insert_filter.pxd, polypolish_insert_filter.py, porechop, rasusa, raven, rnaviralspades.py, shovill, shovill-se, single_to_multi_fast5, skesa, unicycler, whatshap, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, fastp, flash, megahit, megahit_toolkit, pilon, minimap2.py, samclip, velvetg, velveth, any2fasta, kmc, kmc_dump, kmc_tools, racon, rampler, racon_wrapper, estimator_ckpt_converter, docutils, cds-mapping-stats, cds-subgraphs, google-oauthlib-tool, mag-improve |
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GITHUB
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quay.io/biocontainers/bactopia-gather |
singularity registry hpc automated addition for bactopia-gather |
Xcalcmem.sh, abi-dump.3, abi-dump.3.0.3, align-info.3, align-info.3.0.3, aln2bed.pl, art_454, art_SOLiD, art_illumina, art_profiler_454, art_profiler_illumina, bactopia-gather, bloomfilterparser.sh, cache-mgr.3, cache-mgr.3.0.3, check-assembly-accession.py, check-corrupt, check-corrupt.3, check-corrupt.3.0.3, check-fastqs.py, combinedAvg.pl, empDist.pl, executor, fasterq-dump-orig.3.0.3, fasterq-dump.3, fasterq-dump.3.0.3, fastq-dl, fastq-dump-orig.3.0.3, fastq-dump.3, fastq-dump.3.0.3, fastq-scan, fastqReadAvg.pl, gimme_taxa.py, illumina-dump.3, illumina-dump.3.0.3, kdbmeta.3, kdbmeta.3.0.3, map2bed.pl, markdown-it, ncbi-genome-download, ngd, ngs-pileup, ngs-pileup.3, ngs-pileup.3.0.3, prefetch-orig.3.0.3, prefetch.3, prefetch.3.0.3, pysradb, rcexplain.3, rcexplain.3.0.3, ref-variation, ref-variation.3, ref-variation.3.0.3, rich-click, sam-dump-orig.3.0.3, sam-dump.3, sam-dump.3.0.3, sff-dump.3, sff-dump.3.0.3, sra-pileup-orig.3.0.3, sra-pileup.3, sra-pileup.3.0.3, sra-search, sra-search.3, sra-search.3.0.3, sra-stat.3, sra-stat.3.0.3, srapath-orig.3.0.3, srapath.3, srapath.3.0.3, sratools.3, sratools.3.0.3, summation.pl, test-sra.3, test-sra.3.0.3, var-expand, var-expand.3, var-expand.3.0.3, vdb-config.3, vdb-config.3.0.3, vdb-decrypt.3, vdb-decrypt.3.0.3, vdb-dump-orig.3.0.3, vdb-dump.3, vdb-dump.3.0.3, vdb-encrypt.3, vdb-encrypt.3.0.3, vdb-validate.3, vdb-validate.3.0.3, kmutate.sh, runhmm.sh, fasterq-dump-orig, fastq-dump-orig, prefetch-orig, sam-dump-orig, sra-pileup-orig, srapath-orig, kmerposition.sh, reformatpb.sh, sratools, summarizecoverage.sh, uuid, uuid-config, abi-dump, align-info, alltoall.sh, analyzesketchresults.sh, cache-mgr, comparessu.sh, fasterq-dump, fastq-dump, filtersilva.sh, illumina-dump, kdbmeta |
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quay.io/biocontainers/bactopia-py |
singularity registry hpc automated addition for bactopia-py |
bactopia-citations, bactopia-download, bactopia-prepare, bactopia-search, bactopia-summary, executor, markdown-it, pysradb, rich-click, f2py3.11, coloredlogs, humanfriendly, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, pygmentize, xslt-config, xsltproc, tqdm, normalizer, python3.1 |
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GITHUB
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quay.io/biocontainers/bactopia-qc |
singularity registry hpc automated addition for bactopia-qc |
NanoPlot, Xcalcmem.sh, bactopia-qc, bloomfilterparser.sh, check-fastqs.py, csv-import, elasticurl, elasticurl_cpp, elastipubsub, fastq-scan, kaleido, lighter, mathjax-path, nanoq, orc-memory, orc-scan, porechop, produce_x_platform_fuzz_corpus, rasusa, run_x_platform_fuzz_corpus, timezone-dump, kmutate.sh, runhmm.sh, fastp, kmerposition.sh, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, reformatpb.sh, sha256_profile, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, rename, sketchblacklist2.sh, splitribo.sh, addssu.sh, adjusthomopolymers.sh, analyzeaccession.sh, analyzegenes.sh, applyvariants.sh, bbcms.sh |
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GITHUB
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quay.io/biocontainers/bactopia-sketcher |
singularity registry hpc automated addition for bactopia-sketcher |
bactopia-sketcher, sourmash, screed, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd, df |
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GITHUB
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quay.io/biocontainers/bactopia-teton |
singularity registry hpc automated addition for bactopia-teton |
alpha_diversity.py, bactopia-teton, beta_diversity.py, bracken, bracken-build, combine_bracken_outputs.py, combine_kreports.py, combine_mpa.py, est_abundance.py, extract_kraken_reads.py, fastq-scan, filter_bracken.out.py, fix_unmapped.py, generate_kmer_distribution.py, kmer2read_distr, kraken-bracken-summary.py, kraken2, kraken2-build, kraken2-inspect, kreport2krona.py, kreport2mpa.py, ktClassifyHits, ktImportHits, make_kreport.py, make_ktaxonomy.py, rsync-ssl, ktClassifyBLAST, ktGetContigMagnitudes, ktGetLCA, ktGetLibPath, ktGetTaxIDFromAcc, ktGetTaxInfo, ktImportBLAST, ktImportDiskUsage, ktImportEC, ktImportFCP, ktImportGalaxy, ktImportKrona, ktImportMETAREP-BLAST, ktImportMETAREP-EC, ktImportMGRAST, ktImportPhymmBL, ktImportRDP, ktImportRDPComparison, ktImportTaxonomy, ktImportText, ktImportXML, ktUpdateTaxonomy.sh, rsync, xxh128sum |
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GITHUB
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quay.io/biocontainers/bactopia-variants |
singularity registry hpc automated addition for bactopia-variants |
RNAmultifold, TMalign, bactopia-variants, cleanup-coverage.py, make_pscores.pl, mask-consensus.py, poa, sam_add_rg.pl, snippy, snippy-clean_full_aln, snippy-core, snippy-multi, snippy-vcf_extract_subs, snippy-vcf_report, snippy-vcf_to_tab, split_ref_by_bai_datasize.py, update_version.sh, vcf-annotator, snp-sites, clustalo, vt, rename, tabix++, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb, impala, makemat, megablast, samclip, any2fasta, snpEff, bamleftalign, bc, coverage_to_regions.py, dc, fasta_generate_regions.py, freebayes-parallel |
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GITHUB
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quay.io/biocontainers/bactopia |
shpc-registry automated BioContainers addition for bactopia |
amr_report, amrfinder, amrfinder_update, ariba, bactopia, bactopia-citations.py, bactopia-datasets.py, bactopia-download.py, bactopia-prepare.py, bactopia-search.py, bsdcat, bsdcpio, bsdtar, check-assembly-accession.py, check-fastqs.py, cleanup-coverage.py, conda2solv, dna_mutation, dumpsolv, executor, fasta2parts, fasta_check, fasta_extract, gff_check, gimme_taxa.py, installcheck, mamba, mamba-package, mask-consensus.py, merge-blast-json.py, mergesolv, mlst-blast.py, ncbi-genome-download, nextflow, nextflow.bak, ngd, repo2solv, select-references.py, split-coverages.py, staphopia, testsolv, conda-env, cph, fastaq, funzip, unzipsfx, zipgrep, zipinfo, FET.pl, cd-hit-clstr_2_blm8.pl, cds-mapping-stats |
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GITHUB
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quay.io/biocontainers/badread |
shpc-registry automated BioContainers addition for badread |
badread, edlib-aligner, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc |
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GITHUB
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quay.io/biocontainers/baitfisher |
shpc-registry automated BioContainers addition for baitfisher |
BaitFilter, BaitFisher |
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GITHUB
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quay.io/biocontainers/bakdrive |
shpc-registry automated BioContainers addition for bakdrive |
bakdrive, httpx, isympy, cmark, pulptest, cbc, clp, glpsol, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py |
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GITHUB
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quay.io/biocontainers/bakta |
shpc-registry automated BioContainers addition for bakta |
EukHighConfidenceFilter, amr_report, amrfinder, amrfinder_update, bakta, bakta_db, bakta_proteins, covels-SE, coves-SE, dna_mutation, eufindtRNA, fasta2gsi, fasta2parts, fasta_check, fasta_extract, gff_check, pilercr, sstofa, tRNAscan-SE, tRNAscan-SE.conf, trnascan-1.4, aragorn, igzip, pbunzip2, pbzcat, pbzip2, cmalign, cmbuild, cmcalibrate, cmconvert, cmemit |
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GITHUB
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quay.io/biocontainers/bali-phy |
shpc-registry automated BioContainers addition for bali-phy |
alignment-cat, alignment-chop-internal, alignment-compare, alignment-consensus, alignment-convert, alignment-distances, alignment-draw, alignment-find, alignment-find-conserved, alignment-gild, alignment-identity, alignment-indices, alignment-info, alignment-max, alignment-smc, alignment-thin, alignment-translate, alignments-diff, bali-phy, bali-phy-pkg, bali-subsample, bp-analyze, cut-range, draw-graph, draw-tree, extract-ancestors, joint-indels, joint-parsimony, mctree-mean-lengths, model_P, partitions-supported, path-graph, pickout, statreport, stats-cat, stats-merge, stats-select, summarize-ancestors, tree-mean-lengths, tree-partitions, tree-reroot, tree-tool, trees-bootstrap, trees-consensus, trees-distances, trees-pair-distances, trees-to-SRQ, chrpath, gnuplot, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config |
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GITHUB
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quay.io/biocontainers/balrog |
shpc-registry automated BioContainers addition for balrog |
balrog, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/baltic |
shpc-registry automated BioContainers addition for baltic |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc |
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GITHUB
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quay.io/biocontainers/bam-readcount |
shpc-registry automated BioContainers addition for bam-readcount |
bam-readcount, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, perl5.26.2, podselect |
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GITHUB
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quay.io/biocontainers/bam2fasta |
shpc-registry automated BioContainers addition for bam2fasta |
bam2fasta, pathos_connect, portpicker, pox, ppserver, screed, get_objgraph, undill, tqdm, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/bam2fastx |
shpc-registry automated BioContainers addition for bam2fastx |
bam2fasta, bam2fastq, bam2sam, ccs-kinetics-bystrandify, pbbamify, pbindex, pbindexdump, pbmerge, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/bam2plot |
singularity registry hpc automated addition for bam2plot |
bam2plot, checksum-profile, elastishadow, mosdepth, protoc-28.2.0, pyfastx, minimap2.py, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, annot-tsv, elasticurl, elasticurl_cpp, elastipubsub, numpy-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, gflags_completions.sh |
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GITHUB
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quay.io/biocontainers/bamaddrg |
shpc-registry automated BioContainers addition for bamaddrg |
bamaddrg |
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GITHUB
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quay.io/biocontainers/bamaligncleaner |
shpc-registry automated BioContainers addition for bamaligncleaner |
bamAlignCleaner, tqdm, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/bambamc |
shpc-registry automated BioContainers addition for bambamc |
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GITHUB
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quay.io/biocontainers/bamclipper |
shpc-registry automated BioContainers addition for bamclipper |
bamclipper.sh, clipprimer.pl, injectseparator.pl, parsort, perl5.32.0, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh |
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GITHUB
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quay.io/biocontainers/bamcmp |
shpc-registry automated BioContainers addition for bamcmp |
bamcmp, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/bamdash |
singularity registry hpc automated addition for bamdash |
bamdash, kaleido, mathjax-path, certutil, nspr-config, nss-config, pk12util, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/bamhash |
shpc-registry automated BioContainers addition for bamhash |
bamhash_checksum_bam, bamhash_checksum_fasta, bamhash_checksum_fastq |
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GITHUB
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quay.io/biocontainers/bamkit |
shpc-registry automated BioContainers addition for bamkit |
bamcleanheader.py, bamfilterrg.py, bamgroupreads.py, bamheadrg.py, bamlibs.py, bamtofastq.py, sectosupp, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/bamm |
shpc-registry automated BioContainers addition for bamm |
bamFlags, bamm, perl5.32.0, qualfa2fq.pl, xa2multi.pl, bwa, f2py2, f2py2.7, fasta-sanitize.pl, plot-ampliconstats, python2-config, python2.7-config |
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GITHUB
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quay.io/biocontainers/bamr |
shpc-registry automated BioContainers addition for bamr |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/bamread |
shpc-registry automated BioContainers addition for bamread |
bamread, natsort, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7 |
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GITHUB
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quay.io/biocontainers/bamscale |
shpc-registry automated BioContainers addition for bamscale |
BAMscale, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/bamsnap |
shpc-registry automated BioContainers addition for bamsnap |
bamsnap, faidx, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, jpgicc |
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GITHUB
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quay.io/biocontainers/bamstats |
singularity registry hpc automated addition for bamstats |
bamstats |
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GITHUB
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quay.io/biocontainers/bamsurgeon |
singularity registry hpc automated addition for bamsurgeon |
addindel.py, addsnv.py, addsv.py, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, esd2esi, exonerate, exonerate-server, fasta2esd, fastaannotatecdna, fastachecksum, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasubseq, fastatranslate, fastavalidcds, ipcress |
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GITHUB
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quay.io/biocontainers/bamtocov |
shpc-registry automated BioContainers addition for bamtocov |
average-coverage.py, bamcountrefs, bamtarget, bamtocounts, bamtocov, comparecounts.py, covToWig.py, covtotarget, feat-counts.py, gff2bed.py, low-cov-multisample.py, make-target-from-bam.py, prokka-annotation-refupdate.py, strip-seq-from-bam.py, gff2bed, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/bamtools |
shpc-registry automated BioContainers addition for bamtools |
bamtools |
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GITHUB
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quay.io/biocontainers/bamutil |
shpc-registry automated BioContainers addition for bamutil |
bam |
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GITHUB
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quay.io/biocontainers/bandage |
shpc-registry automated BioContainers addition for bandage |
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GITHUB
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quay.io/biocontainers/banner |
shpc-registry automated BioContainers addition for banner |
banner, conv-template, from-template, py.test, pytest, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m |
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GITHUB
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quay.io/biocontainers/barcode_splitter |
shpc-registry automated BioContainers addition for barcode_splitter |
barcode_splitter, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/baredsc |
shpc-registry automated BioContainers addition for baredsc |
baredSC_1d, baredSC_2d, combineMultipleModels_1d, combineMultipleModels_2d, nc3tonc4, nc4tonc3, ncinfo, zipcmp, zipmerge, ziptool, natsort, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8 |
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GITHUB
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quay.io/biocontainers/barriers |
shpc-registry automated BioContainers addition for barriers |
barriers, crossrates.pl, fix_bar.pl, genPoHoLandscape, saddle.pl, saddle2dot.pl, saddle2gml.pl, treeplot.pl, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold |
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GITHUB
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quay.io/biocontainers/barrnap-python |
shpc-registry automated BioContainers addition for barrnap-python |
barrnap.py, barrnap, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct |
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GITHUB
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quay.io/biocontainers/barrnap |
shpc-registry automated BioContainers addition for barrnap |
barrnap, perl5.32.0, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev |
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GITHUB
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quay.io/biocontainers/barseqcount |
singularity registry hpc automated addition for barseqcount |
barseqcount, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/bart |
singularity registry hpc automated addition for bart |
bart, bart-profile, bart-update, kma, kma_index, kma_shm, kma_update, refseq_masher, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/basenji |
shpc-registry automated BioContainers addition for basenji |
akita_data.py, akita_data_read.py, akita_data_write.py, akita_predict.py, akita_sat_plot.py, akita_sat_vcf.py, akita_scd.py, akita_scd_multi.py, akita_test.py, akita_train.py, bam_cov.py, basenji_annot_chr.py, basenji_bench_classify.py, basenji_bench_gtex.py, basenji_bench_gtex_cmp.py, basenji_bench_phylop.py, basenji_bench_phylop_folds.py, basenji_cmp.py, basenji_data.py, basenji_data2.py, basenji_data_align.py, basenji_data_gene.py, basenji_data_hic_read.py, basenji_data_hic_write.py, basenji_data_read.py, basenji_data_write.py, basenji_fetch_app.py, basenji_fetch_app1.py, basenji_fetch_app2.py, basenji_fetch_norm.py, basenji_fetch_vcf.py, basenji_gtex_folds.py, basenji_hdf5_genes.py, basenji_hidden.py, basenji_map.py, basenji_map_genes.py, basenji_map_seqs.py, basenji_motifs.py, basenji_motifs_denovo.py, basenji_norm_h5.py, basenji_predict.py, basenji_predict_bed.py, basenji_predict_bed_multi.py, basenji_sad.py, basenji_sad_multi.py, basenji_sad_norm.py, basenji_sad_ref.py, basenji_sad_ref_multi.py, basenji_sad_table.py, basenji_sat_bed.py, basenji_sat_bed_multi.py, basenji_sat_folds.py, basenji_sat_plot.py, basenji_sat_plot2.py, basenji_sat_vcf.py, basenji_sed.py, basenji_sed_multi.py, basenji_sedg.py, basenji_test.py, basenji_test_folds.py, basenji_test_genes.py, basenji_test_reps.py, basenji_test_specificity.py, basenji_train.py, basenji_train1.py, basenji_train2.py, basenji_train_folds.py, basenji_train_hic.py, basenji_train_reps.py, cooltools, fits2bitmap, fitscheck, fitsdiff, fitsheader, fitsinfo, import_pb_to_tensorboard, samp_hub, save_model.py, showtable, sonnet_predict_bed.py, sonnet_sad.py, sonnet_sad_multi.py, sonnet_sat_bed.py, sonnet_sat_vcf.py, tfr_bw.py, tfr_hdf5.py, tfr_qc.py, upgrade_tf1.py, volint, wcslint, cooler, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix |
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GITHUB
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quay.io/biocontainers/basic |
shpc-registry automated BioContainers addition for basic |
BASIC.py, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, perl5.26.2 |
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GITHUB
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quay.io/biocontainers/batch_brb |
shpc-registry automated BioContainers addition for batch_brb |
accession_retrieve, adb01_check_db.py, adb02_add_alias_to_db.py, aliasdb_pipeline, alncut, alnpi, ar01_accret.py, bash, bashbug, batch_brb_functions.py, batch_brb_setup, batch_makeblastdb, del01_delete_db_entries.py, delete_db, fascodon, fascomp, fasconvert, fascut, fasfilter, fasgrep, fashead, faslen, faspaste, fasrc, fassort, fassub, fastail, fastax, fastaxsort, fastr, fasttree_pipeline, fasuniq, faswc, fasxl, ft01_extract_accessions.py, gbfalncut, gbfcut, mdb01_makeblastdb.sh, mdb02_convert_headers.py, mdb03_add_to_db.py, merge_results, or01_filter_hits.py, or02_find_orthologs.py, orthology_pipeline, show, seqkit, FastTree-2.1.10.c, FastTreeMP, muscle, FastTree, fasttree, CA.pm, cacert.pem, index-themes, fetch-extras |
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GITHUB
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quay.io/biocontainers/bats |
shpc-registry automated BioContainers addition for bats |
bats |
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GITHUB
|
quay.io/biocontainers/batvi |
shpc-registry automated BioContainers addition for batvi |
call_integrations.sh, cat_sorted_sam.sh, clean_run.sh, collate.sh, collate_from_file.sh, combine_hits.pl, commandline.sh, convert_to_fastq.sh, email.sh, extract_hbv_from_fasta.sh, extract_sam_xargs.sh, extract_unmapped_and_oneside.sh, extracthbv.sh, gen_paths.sh, get_blast_hits.sh, get_reads.pl, hbvblast.sh, join_sam.sh, manualcompile.sh, relabelunbugreads.sh, search_text.sh, sort_by_name.sh, unbug.pl, unbug.sh, unbug_xarg.sh, view_xargs.sh, build.sh, picard, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns |
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GITHUB
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quay.io/biocontainers/bax2bam |
shpc-registry automated BioContainers addition for bax2bam |
bam2sam, bax2bam, pbbamify, pbindex, pbindexdump, pbmerge, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff |
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GITHUB
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quay.io/biocontainers/bayesase |
shpc-registry automated BioContainers addition for bayesase |
bwa_split_sam_seonly_2output.py, calculate_priors_ase_count_tables.py, check_aln_design_file.py, check_comparate_design_file.py, check_lost_reads.py, check_sam_present.py, check_samcomp_lost_reads.py, combine_count_tables.py, merge_comparates_generate_bayesian_headers.py, merge_priors_to_comparate.py, nbmodel_stan2.py, sam_compare_w_feature.py, summarize_sam_compare_cnts_table_1cond.py, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin, c89, c99 |
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GITHUB
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quay.io/biocontainers/bayescan |
shpc-registry automated BioContainers addition for bayescan |
bayescan2 |
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GITHUB
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quay.io/biocontainers/bayescode |
singularity registry hpc automated addition for bayescode |
attr, balsam, calibs_coevol_to_mutsel.py, esdcompat, fasta_to_ali.py, fitness_to_selcoeff.py, getfattr, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, lprodump, lrelease-pro, lupdate-pro, meshdebug, mutselomega, nodemutsel, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, plot_tree.py, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, readmutselomega, readnodemutsel, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, traits_coevol_to_mutsel.py, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, xml2-config.bak, ete3, xkbcli, db_convert, cups-config, ippeveprinter, ipptool, db_archive, db_checkpoint, db_deadlock, db_dump, db_hotbackup, db_load |
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GITHUB
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quay.io/biocontainers/bayestyper |
shpc-registry automated BioContainers addition for bayestyper |
bayesTyper, bayesTyperTools |
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GITHUB
|
quay.io/biocontainers/baypass |
singularity registry hpc automated addition for baypass |
g_baypass |
|
GITHUB
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quay.io/biocontainers/bazam |
shpc-registry automated BioContainers addition for bazam |
bazam, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/bbknn |
shpc-registry automated BioContainers addition for bbknn |
numba, pycc, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config |
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GITHUB
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quay.io/biocontainers/bbmap |
shpc-registry automated BioContainers addition for bbmap |
a_sample_mt.sh, addadapters.sh, addssu.sh, adjusthomopolymers.sh, alltoall.sh, analyzeaccession.sh, analyzegenes.sh, analyzesketchresults.sh, applyvariants.sh, bbcms.sh, bbcountunique.sh, bbduk.sh, bbest.sh, bbfakereads.sh, bbmap.sh, bbmapskimmer.sh, bbmask.sh, bbmerge-auto.sh, bbmerge.sh, bbnorm.sh, bbrealign.sh, bbrename.sh, bbsketch.sh, bbsplit.sh, bbsplitpairs.sh, bbstats.sh, bbversion.sh, bbwrap.sh, bloomfilter.sh, build_env_setup.sh, calcmem.sh, calctruequality.sh, callgenes.sh, callpeaks.sh, callvariants.sh, callvariants2.sh, clumpify.sh, commonkmers.sh, comparegff.sh, comparesketch.sh, comparessu.sh, comparevcf.sh, conda_build.sh, consect.sh, consensus.sh, countbarcodes.sh, countgc.sh, countsharedlines.sh, crossblock.sh, crosscontaminate.sh, cutgff.sh, cutprimers.sh, decontaminate.sh, dedupe.sh, dedupe2.sh, dedupebymapping.sh, demuxbyname.sh, diskbench.sh, estherfilter.sh, explodetree.sh, fetchproks.sh, filterassemblysummary.sh, filterbarcodes.sh, filterbycoverage.sh, filterbyname.sh, filterbysequence.sh, filterbytaxa.sh, filterbytile.sh, filterlines.sh, filterqc.sh, filtersam.sh, filtersilva.sh, filtersubs.sh, filtervcf.sh, fixgaps.sh, fungalrelease.sh, fuse.sh, gbff2gff.sh, getreads.sh, gi2ancestors.sh, gi2taxid.sh, gitable.sh, grademerge.sh, gradesam.sh, icecreamfinder.sh, icecreamgrader.sh, icecreammaker.sh, idmatrix.sh, idtree.sh, invertkey.sh, kapastats.sh, kcompress.sh, keepbestcopy.sh, khist.sh, kmercountexact.sh, kmercountmulti.sh, kmercoverage.sh, kmerfilterset.sh, kmerlimit.sh, kmerlimit2.sh, kmerposition.sh, kmutate.sh, lilypad.sh, loadreads.sh, loglog.sh, makechimeras.sh, makecontaminatedgenomes.sh, makepolymers.sh, mapPacBio.sh, matrixtocolumns.sh, mergeOTUs.sh, mergebarcodes.sh, mergepgm.sh, mergeribo.sh, mergesam.sh, mergesketch.sh, mergesorted.sh, msa.sh, mutate.sh, muxbyname.sh, partition.sh, phylip2fasta.sh, pileup.sh, plotflowcell.sh, plotgc.sh, postfilter.sh, printtime.sh, processfrag.sh, processhi-c.sh, processspeed.sh, randomgenome.sh, randomreads.sh, readlength.sh, readqc.sh, reducesilva.sh, reformat.sh, reformatpb.sh, removebadbarcodes.sh, removecatdogmousehuman.sh, removehuman.sh, removehuman2.sh, removemicrobes.sh, removesmartbell.sh, rename.sh, renameimg.sh, repair.sh, replaceheaders.sh, representative.sh, rqcfilter.sh, rqcfilter2.sh, runhmm.sh, samtoroc.sh, seal.sh, sendsketch.sh, shred.sh, shrinkaccession.sh, shuffle.sh, shuffle2.sh, sketch.sh, sketchblacklist.sh, sketchblacklist2.sh, sortbyname.sh, splitbytaxa.sh, splitnextera.sh, splitribo.sh, splitsam.sh, splitsam4way.sh, splitsam6way.sh, stats.sh, statswrapper.sh, streamsam.sh, subsketch.sh, summarizecontam.sh, summarizecoverage.sh, summarizecrossblock.sh, summarizemerge.sh, summarizequast.sh, summarizescafstats.sh, summarizeseal.sh, summarizesketch.sh, synthmda.sh, tadpipe.sh, tadpole.sh, tadwrapper.sh, taxonomy.sh, taxserver.sh, taxsize.sh, taxtree.sh, testfilesystem.sh, testformat.sh, testformat2.sh, tetramerfreq.sh, textfile.sh, translate6frames.sh, unicode2ascii.sh, unzip.sh, vcf2gff.sh, webcheck.sh |
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GITHUB
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quay.io/biocontainers/bbmix |
singularity registry hpc automated addition for bbmix |
qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fonttools, pyftmerge, pyftsubset, ttx, tjbench, brotli, opj_compress, opj_decompress, opj_dump |
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GITHUB
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quay.io/biocontainers/bcalm |
shpc-registry automated BioContainers addition for bcalm |
bcalm, h5cc |
|
GITHUB
|
quay.io/biocontainers/bcbio-gff |
shpc-registry automated BioContainers addition for bcbio-gff |
aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
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GITHUB
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quay.io/biocontainers/bcbio-prioritize |
shpc-registry automated BioContainers addition for bcbio-prioritize |
bcbio-prioritize, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/bcbio-rnaseq |
shpc-registry automated BioContainers addition for bcbio-rnaseq |
bcbio-rnaseq, pandoc-citeproc, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj |
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GITHUB
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quay.io/biocontainers/bcbio-variation-recall |
shpc-registry automated BioContainers addition for bcbio-variation-recall |
bcbio-variation-recall, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
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quay.io/biocontainers/bcbio-variation |
shpc-registry automated BioContainers addition for bcbio-variation |
bcbio-variation, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/bcbio_monitor |
shpc-registry automated BioContainers addition for bcbio_monitor |
bcbio_monitor, flask, cxpm, sxpm, acyclic, bcomps, ccomps, circo, dijkstra, dot, dot2gxl |
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GITHUB
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quay.io/biocontainers/bcbiogff |
shpc-registry automated BioContainers addition for bcbiogff |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/bcbreport |
shpc-registry automated BioContainers addition for bcbreport |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/bcdoc |
shpc-registry automated BioContainers addition for bcdoc |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, rst2html.py |
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GITHUB
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quay.io/biocontainers/bcftools-gtc2vcf-plugin |
shpc-registry automated BioContainers addition for bcftools-gtc2vcf-plugin |
guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl |
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GITHUB
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quay.io/biocontainers/bcftools-snvphyl-plugin |
shpc-registry automated BioContainers addition for bcftools-snvphyl-plugin |
guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/bcftools |
shpc-registry automated BioContainers addition for bcftools |
bcftools, bgzip, color-chrs.pl, gff2gff.py, guess-ploidy.py, htsfile, libdeflate-gunzip, libdeflate-gzip, plot-roh.py, plot-vcfstats, run-roh.pl, tabix, vcfutils.pl |
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GITHUB
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quay.io/biocontainers/bcgtree |
singularity registry hpc automated addition for bcgtree |
Gblocks, bash, bashbug, bcgTree.pl, concatenate_by_header.pl, extract_essential_genes.sh, mm-alignments.pl, plot_matrix.py, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, muscle, prodigal, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn, esl-seqrange |
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GITHUB
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quay.io/biocontainers/bcl2fastq-nextseq |
shpc-registry automated BioContainers addition for bcl2fastq-nextseq |
bcl_to_fastq, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc |
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GITHUB
|
quay.io/biocontainers/bcool |
shpc-registry automated BioContainers addition for bcool |
bcalm, bcool, bgreat, btrim, ntcard, nthll, h5cc, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/bcov |
shpc-registry automated BioContainers addition for bcov |
bcov, glpsol |
|
GITHUB
|
quay.io/biocontainers/bctools |
shpc-registry automated BioContainers addition for bctools |
convert_bc_to_binary_RY.py, coords2clnt.py, datamash, extract_aln_ends.py, extract_bcs.py, merge_pcr_duplicates.py, remove_tail.py, rm_spurious_events.pl, rm_spurious_events.py, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, f2py3.6, guess-ploidy.py |
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GITHUB
|
quay.io/biocontainers/bd2k-python-lib |
shpc-registry automated BioContainers addition for bd2k-python-lib |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/beacon2-import |
singularity registry hpc automated addition for beacon2-import |
beacon2-import, beacon2-search, bioblend-galaxy-tests, asadmin, bundle_image, cfadmin, cq, cwutil, cyvcf2, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier, instance_events, kill_instance, launch_instance, list_instances, lss3, mturk, pyami_sendmail, route53, s3put, sdbadmin, taskadmin, coloredlogs, humanfriendly, f2py3.6 |
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GITHUB
|
quay.io/biocontainers/beacon2-ri-tools |
singularity registry hpc automated addition for beacon2-ri-tools |
beacon, bff-validator, bff2html.pl, bff2json.pl, crc32, csv2xlsx, extract_vba, hypnotoad, mojo, morbo, perl-doc, pxf2bff, vcf2bff.pl, yamlpp5-events, yamlpp5-highlight, yamlpp5-load, yamlpp5-load-dump, yamlpp5-parse-emit, pg_amcheck, pg_verifybackup, pg_checksums, tzselect, zdump, zic, oid2name, pg_receivewal, pg_resetwal, pg_waldump, vacuumlo, clusterdb, createdb, createuser, dropdb, dropuser, ecpg, initdb, pg_archivecleanup, pg_basebackup, pg_controldata, pg_ctl, pg_dump, pg_dumpall, pg_isready |
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GITHUB
|
quay.io/biocontainers/beagle-lib |
shpc-registry automated BioContainers addition for beagle-lib |
cups-config, ippeveprinter, ipptool, libtoolize, libtool, jfr, jaotc, aserver, jdeprscan, jhsdb |
|
GITHUB
|
quay.io/biocontainers/beagle |
shpc-registry automated BioContainers addition for beagle |
beagle, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/beamspy |
shpc-registry automated BioContainers addition for beamspy |
beamspy, pyside2-lupdate, pyside2-rcc, pyside2-uic, pyside_tool.py, shiboken2, shiboken_tool.py, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, qwebengine_convert_dict |
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GITHUB
|
quay.io/biocontainers/beast |
shpc-registry automated BioContainers addition for beast |
beast, beauti, loganalyser, logcombiner, treeannotator, treestat, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
|
quay.io/biocontainers/beast2 |
shpc-registry automated BioContainers addition for beast2 |
applauncher, beast, beauti, densitree, loganalyser, logcombiner, packagemanager, treeannotator, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/beav |
singularity registry hpc automated addition for beav |
MitoHighConfidenceFilter, TMalign, amr_report, amrfinder, amrfinder_index, amrfinder_update, antismash, bakta, bakta_db, bakta_plot, bakta_proteins, beav, beav_db, defense-finder, dna_mutation, download-antismash-databases, fasta2parts, fasta_check, fasta_extract, gff_check, hmmalign2, hmmbuild2, hmmcalibrate2, hmmconvert2, hmmemit2, hmmfetch2, hmmindex2, hmmpfam2, hmmsearch2, integron_finder, integron_merge, integron_split, less2scss, macsyconfig, macsydata, macsyfinder, macsymerge, macsyprofile, macsysplit, pilercr, pl2bat.pl, pyrodigal, pyscss, tbl2asn-test, xsltproc_lite, make_pscores.pl, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip, compute-prior-dist, compute-uniform-priors, create-priors, dreme, dreme_xml_to_html, dreme_xml_to_txt, dust, elm2meme, fasta-center, fasta-dinucleotide-shuffle, fasta-fetch, fasta-get-markov, fasta-grep, fasta-hamming-enrich |
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GITHUB
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quay.io/biocontainers/bed2gff |
singularity registry hpc automated addition for bed2gff |
bed2gff |
|
GITHUB
|
quay.io/biocontainers/bed2gtf |
singularity registry hpc automated addition for bed2gtf |
bed2gtf |
|
GITHUB
|
quay.io/biocontainers/bedgovcf |
singularity registry hpc automated addition for bedgovcf |
bedgovcf, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/bedops |
shpc-registry automated BioContainers addition for bedops |
bedops, bedops-float128, bedops-megarow, bedops-typical, switch-BEDOPS-binary-type, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical, bam2bed_sge, bam2bed_sge-float128 |
|
GITHUB
|
quay.io/biocontainers/bedparse |
shpc-registry automated BioContainers addition for bedparse |
bedparse, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/bedtk |
shpc-registry automated BioContainers addition for bedtk |
bedtk |
|
GITHUB
|
quay.io/biocontainers/bedtools |
shpc-registry automated BioContainers addition for bedtools |
bedtools, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, closestBed, clusterBed |
|
GITHUB
|
quay.io/biocontainers/behst |
shpc-registry automated BioContainers addition for behst |
behst, behst-download-data, behst-download-data.sh, behst.orig, behst.py, chromRegionLength.r, dataframeSumAllValues.r, difference_from_first_TSS_script_mordor.r, difference_from_first_TSS_script_mordor_chrom_wide.r, download_behst_data.sh, gProfilerCall.r, gene_annotation_parser.py, gene_annotation_parser_load_pickled_files.py, hiC_parser.py, hiC_parser_load_pickle_file.py, list_of_files, plot_heatmaps.r, project.sh, project.sh.orig, pvaluesPlotGenerator.r, retrieveMinRowCol.r, script_all_heatmaps.sh, script_multi_project_run.sh, script_multi_project_run_WITHOUT_LOOP.sh, script_multi_project_run_input_parameters.sh, temp_test.sh, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, idn2, shiftBed |
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GITHUB
|
quay.io/biocontainers/bel-resources |
shpc-registry automated BioContainers addition for bel-resources |
bel-resources, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/bellerophon |
shpc-registry automated BioContainers addition for bellerophon |
bellerophon, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/bellmans-gapc |
shpc-registry automated BioContainers addition for bellmans-gapc |
gapc |
|
GITHUB
|
quay.io/biocontainers/berokka |
shpc-registry automated BioContainers addition for berokka |
berokka, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml, basemlg, chi2, codeml, evolver, infinitesites |
|
GITHUB
|
quay.io/biocontainers/besst |
shpc-registry automated BioContainers addition for besst |
reads_to_ctg_map.py, runBESST, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/bftools |
shpc-registry automated BioContainers addition for bftools |
bf.sh, bfconvert, bioformats_package.jar, config.sh, domainlist, formatlist, ijview, mkfake, showinf, tiffcomment, xmlindent, xmlvalid, metadata_conda_debug.yaml, jpackage, cups-config, ippeveprinter, ipptool, build_env_setup.sh, conda_build.sh, jfr, aserver, jdeprscan |
|
GITHUB
|
quay.io/biocontainers/bgreat |
shpc-registry automated BioContainers addition for bgreat |
bgreat |
|
GITHUB
|
quay.io/biocontainers/bialign |
singularity registry hpc automated addition for bialign |
bialign.py, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, gif2rgb, gifbuild, gifclrmp, giffix, giftext, giftool |
|
GITHUB
|
quay.io/biocontainers/biasaway |
shpc-registry automated BioContainers addition for biasaway |
biasaway, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc, tificc |
|
GITHUB
|
quay.io/biocontainers/bibliospec |
shpc-registry automated BioContainers addition for bibliospec |
BlibBuild, BlibFilter, BlibSearch, BlibToMs2 |
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GITHUB
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quay.io/biocontainers/bicseq2-norm |
shpc-registry automated BioContainers addition for bicseq2-norm |
BRS, NBICseq-norm.pl, PrepPois, PrepPoisGAM, combineFile, compRatio.R, filterCNV, normalize.R, normalizeGAM.R, plot_RC_vs_GC.R, purity.R, purityEM, random_split, refine.R, refineGAM.R, test.mgcv.installed.R, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/bicseq2-seg |
shpc-registry automated BioContainers addition for bicseq2-seg |
BICseqMulSample.pl, BICseqOneSample.pl, BICseqTwoSample.pl, EstLambdaFct, MBICseq, NBICseq-seg.pl, bootstrap, combineFile, combineSegBoostrap.R, countRead, genotype, genotype.pl, plotProfile.R, report.R, reportOneSample.R, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/bifrost |
shpc-registry automated BioContainers addition for bifrost |
Bifrost |
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GITHUB
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quay.io/biocontainers/bigscape |
singularity registry hpc automated addition for bigscape |
bigscape.py, matplotlib, FastTreeMP, FastTree, fasttree, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn, esl-seqrange, esl-seqstat, esl-sfetch, esl-shuffle, esl-ssdraw, esl-translate |
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GITHUB
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quay.io/biocontainers/bigsi |
shpc-registry automated BioContainers addition for bigsi |
bigsi, falcon-bench, falcon-print-routes, hug, humanfriendly, cygdb, cython, cythonize, db_archive, db_checkpoint, db_deadlock, db_dump, db_hotbackup, db_load |
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GITHUB
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quay.io/biocontainers/bigslice |
singularity registry hpc automated addition for bigslice |
bigslice, download_bigslice_hmmdb, vectorize_bgcs, protoc-25.3.0, numpy-config, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, protoc |
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GITHUB
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quay.io/biocontainers/bigtools |
singularity registry hpc automated addition for bigtools |
bedgraphtobigwig, bedtobigbed, bigbedinfo, bigbedtobed, bigtools, bigwigaverageoverbed, bigwiginfo, bigwigmerge, bigwigtobedgraph, bigwigvaluesoverbed |
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GITHUB
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quay.io/biocontainers/binchicken |
singularity registry hpc automated addition for binchicken |
binchicken, cmtime, eido, genl-ctrl-list, ib_acme, ibis, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, idiag-socket-details, jsondiff, jsonpatch, jsonpointer, mckey, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave, nl-link-ifindex2name, nl-link-list, nl-link-name2ifindex, nl-link-release, nl-link-set, nl-link-stats, nl-list-caches, nl-list-sockets, nl-monitor, nl-neigh-add, nl-neigh-delete, nl-neigh-list, nl-neightbl-list, nl-nh-list, nl-pktloc-lookup, nl-qdisc-add, nl-qdisc-delete, nl-qdisc-list, nl-route-add, nl-route-delete, nl-route-get, nl-route-list, nl-rule-list, nl-tctree-list, nl-util-addr, protoc-24.4.0, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, ucmatose, udaddy, udpong, io_demo, ucx_info, ucx_perftest, ucx_read_profile, mamba-package, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, conda2solv, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, bsdcat, bsdcpio, bsdtar, conda-env, cph, elasticurl, elasticurl_cpp |
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GITHUB
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quay.io/biocontainers/bindash |
shpc-registry automated BioContainers addition for bindash |
bindash |
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GITHUB
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quay.io/biocontainers/binette |
singularity registry hpc automated addition for binette |
binette, checkm2, protoc-23.3.0, pyrodigal, pyfastx, import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, diamond, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, markdown_py, prodigal, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign |
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GITHUB
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quay.io/biocontainers/binlorry |
shpc-registry automated BioContainers addition for binlorry |
binlorry, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/binning_refiner |
singularity registry hpc automated addition for binning_refiner |
Binning_refiner, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/binny |
singularity registry hpc automated addition for binny |
binny, blastn_vdb, cmtime, cnitool, elastipubsub5, h5fuse.sh, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, io_demo, mantis, mckey, mksquashfs, mqtt5_app, mqtt5_canary, mqtt5canary, nltk, produce_x_platform_fuzz_corpus, protoc-23.3.0, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, run-singularity, run_x_platform_fuzz_corpus, scalar, scmp_sys_resolver, singularity, tblastn_vdb, ucmatose, ucx_info, ucx_perftest, ucx_read_profile, udaddy, udpong, unsquashfs, elasticurl, elasticurl_cpp, elastipubsub, markdown-it, bsdcat, bsdcpio, bsdtar, csv-import, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, orc-memory, orc-scan, seqkit, timezone-dump, h5delete, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh |
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GITHUB
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quay.io/biocontainers/binsanity |
shpc-registry automated BioContainers addition for binsanity |
Binsanity, Binsanity-lc, Binsanity-profile, Binsanity-refine, Binsanity-wf, Binsanity2-beta, bin_evaluation, checkm, checkm_analysis, concat, detectionCall, exactSNP, featureCounts, flattenGTF, genRandomReads, get-ids, identifyHMM, propmapped, qualityScores, removeDup, repair, simplify-fasta, subindel, subjunc, sublong, subread-align, subread-buildindex, subread-fullscan, transform-coverage-profile, txUnique, rppr, guppy, pplacer, dendropy-format, sumlabels.py, sumtrees.py, prodigal, hmmpgmd_shard, easel, esl-mixdchlet |
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GITHUB
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quay.io/biocontainers/binspreader |
singularity registry hpc automated addition for binspreader |
bin-refine |
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GITHUB
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quay.io/biocontainers/bio-ting |
shpc-registry automated BioContainers addition for bio-ting |
imseq2ting, ting, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/bio-vcf |
singularity registry hpc automated addition for bio-vcf |
bio-vcf, bundle, bundler, gdbm_dump, gdbm_load, gdbmtool, erb, gem, irb, rake, rdoc, ri, ruby |
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GITHUB
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quay.io/biocontainers/bio_assembly_refinement |
shpc-registry automated BioContainers addition for bio_assembly_refinement |
contig_break_finder, contig_cleaner, contig_overlap_trimmer, pacbio_post_process, fastaq, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer |
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GITHUB
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quay.io/biocontainers/bio_hansel |
shpc-registry automated BioContainers addition for bio_hansel |
biohansel, hansel, cmark, pygmentize, futurize, pasteurize, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/bioawk |
shpc-registry automated BioContainers addition for bioawk |
bioawk |
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GITHUB
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quay.io/biocontainers/biobambam |
shpc-registry automated BioContainers addition for biobambam |
bam12auxmerge, bam12split, bam12strip, bamadapterclip, bamadapterfind, bamalignfrac, bamauxmerge, bamauxsort, bamcat, bamchecksort, bamclipreinsert, bamcollate, bamcollate2, bamdownsamplerandom, bamexplode, bamfillquery, bamfilteraux, bamfilterflags, bamfilterheader, bamfilterheader2, bamfilterlength, bamfiltermc, bamfilternames, bamfilterrefid, bamfilterrg, bamfixmateinformation, bamflagsplit, bamheap2, bamindex, bamintervalcomment, bamintervalcommenthist, bamlastfilter, bammapdist, bammarkduplicates, bammarkduplicates2, bammarkduplicatesopt, bammaskflags, bammdnm, bammerge, bamnumericalindex, bamrank, bamranksort, bamrecalculatecigar, bamrecompress, bamrefinterval, bamreset, bamscrapcount, bamseqchksum, bamsormadup, bamsort, bamsplit, bamsplitdiv, bamstreamingmarkduplicates, bamtagconversion, bamtofastq, bamvalidate, bamzztoname |
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GITHUB
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quay.io/biocontainers/biobasehttptools |
shpc-registry automated BioContainers addition for biobasehttptools |
AccessionToTaxId, AccessionToTaxId-bin, FetchSequence, FetchSequence-bin, GeneIdToGOTerms, GeneIdToGOTerms-bin, GeneIdToUniProtId, GeneIdToUniProtId-bin |
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GITHUB
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quay.io/biocontainers/biobb_adapters |
shpc-registry automated BioContainers addition for biobb_adapters |
bagit.py, black, black-primer, blackd, jupyter-console, jupyter-dejavu, jupyter-qtconsole, prov-compare, prov-convert, send2trash, cwltool, schema-salad-doc, schema-salad-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, jupyter-bundlerextension, jupyter-nbextension |
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GITHUB
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quay.io/biocontainers/biobb_amber |
shpc-registry automated BioContainers addition for biobb_amber |
AddToBox, CartHess2FC.py, ChBox, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, MMPBSA.py.MPI, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, amber_to_pdb, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, bar_pbsa.py, bondtype, bondtype.orig, car_to_files.py, ceinutil.py, cestats, cestats_run, charmmlipid2amber.py, cpeinutil.py, cphstats, cphstats_run, cpinutil.py, cpptraj, cpptraj_randomize_ions, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gwh, hcp_getpdb, leap_add_ions, leap_build_linear_structure, leap_gen_top, leap_solvate, makeANG_RST, makeCHIR_RST, makeCSA_RST.na, makeDIP_RST.protein, makeDIST_RST, makeRIGID_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nab_build_dna_structure, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, parmed_cpinutil, parmed_hmassrepartition, pbsa, pdb4amber, pdb4amber_run, pmemd_mdrun, prepgen, process_mdout, process_mdout.perl, process_minout, process_minout.perl, py_resp.py, pymdpbsa, pytleap, reduce, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, sander_mdrun, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tinker_to_amber, tleap, ucpp, xaLeap, xleap, xparmed, cygdb, cython, cythonize, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc |
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GITHUB
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quay.io/biocontainers/biobb_analysis |
shpc-registry automated BioContainers addition for biobb_analysis |
AddToBox, CartHess2FC.py, ChBox, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, MMPBSA.py.MPI, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, bar_pbsa.py, bondtype, bondtype.orig, car_to_files.py, ceinutil.py, cestats, charmmlipid2amber.py, cpeinutil.py, cphstats, cpinutil.py, cpptraj, cpptraj_average, cpptraj_bfactor, cpptraj_convert, cpptraj_dry, cpptraj_image, cpptraj_mask, cpptraj_rgyr, cpptraj_rms, cpptraj_rmsf, cpptraj_slice, cpptraj_snapshot, cpptraj_strip, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gmx, gmx_cluster, gmx_energy, gmx_image, gmx_rgyr, gmx_rms, gmx_trjconv_str, gmx_trjconv_str_ens, gmx_trjconv_trj, gwh, hcp_getpdb, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, makeANG_RST, makeCHIR_RST, makeCSA_RST.na, makeDIP_RST.protein, makeDIST_RST, makeRIGID_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, pbsa, pdb4amber, prepgen, process_mdout.perl, process_minout.perl, py_resp.py, pymdpbsa, pytleap, reduce, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tinker_to_amber, tleap, ucpp, xaLeap, xleap, xparmed, cygdb, cython, cythonize, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc |
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GITHUB
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quay.io/biocontainers/biobb_chemistry |
shpc-registry automated BioContainers addition for biobb_chemistry |
AddToBox, CartHess2FC.py, ChBox, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, MMPBSA.py.MPI, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, acpype, acpype_params_ac, acpype_params_cns, acpype_params_gmx, acpype_params_gmx_opls, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, babel_add_hydrogens, babel_convert, babel_minimize, babel_remove_hydrogens, bar_pbsa.py, bondtype, bondtype.orig, car_to_files.py, ceinutil.py, cestats, charmmlipid2amber.py, cpeinutil.py, cphstats, cpinutil.py, cpptraj, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gwh, hcp_getpdb, makeANG_RST, makeCHIR_RST, makeCSA_RST.na, makeDIP_RST.protein, makeDIST_RST, makeRIGID_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, obfitall, obmm, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, pbsa, pdb4amber, prepgen, process_mdout.perl, process_minout.perl, py_resp.py, pymdpbsa, pytleap, reduce, reduce_add_hydrogens, reduce_remove_hydrogens, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tinker_to_amber, tleap, ucpp, xaLeap, xleap, xparmed, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop |
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GITHUB
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quay.io/biocontainers/biobb_cmip |
shpc-registry automated BioContainers addition for biobb_cmip |
avgEpsGrid, canal, check_structure, cmip, getPatch, grd2cube, gsd, mrcfile-header, mrcfile-validate, nc3tonc4, nc4tonc3, ncinfo, prepare_structure, surfnet2binaryGrid, titration, watden, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
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GITHUB
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quay.io/biocontainers/biobb_common |
shpc-registry automated BioContainers addition for biobb_common |
normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/biobb_cp2k |
singularity registry hpc automated addition for biobb_cp2k |
cp2k.sopt, cp2k.ssmp, cp2k_prep, cp2k_run, cp2k_shell.ssmp, libxsmm_gemm_generator, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, normalizer, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/biobb_dna |
shpc-registry automated BioContainers addition for biobb_dna |
AddToBox, Canal, Canion, CartHess2FC.py, ChBox, Cur+, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, average_stiffness, basepair_stiffness, biobb_canal, biobb_canion, biobb_curves, bipopulations, bondtype, bondtype.orig, canonicalag, car_to_files.py, ceinutil.py, cestats, charmmlipid2amber.py, cpeinutil.py, cphstats, cpinutil.py, cpptraj, dna_averages, dna_bimodality, dna_timeseries, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gwh, hcp_getpdb, interbpcorr, interhpcorr, interseqcorr, intrabpcorr, intrahpcorr, intraseqcorr, makeANG_RST, makeDIST_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, pbsa, pdb4amber, prepgen, process_mdout.perl, process_minout.perl, puckering, pymdpbsa, pytleap, reduce, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tleap, ucpp, xaLeap, xleap, xparmed, cygdb, cython, cythonize, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
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GITHUB
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quay.io/biocontainers/biobb_flexdyn |
singularity registry hpc automated addition for biobb_flexdyn |
NOLB, concoord_disco, concoord_dist, dist, dist.exe, evol, imc, imod_imode, imod_imove, imode_gcc, imodview, imove, nolb_nma, prody, prody_anm, disco, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/biobb_flexserv |
singularity registry hpc automated addition for biobb_flexserv |
bd, bd_run, bison, diaghess, dmd_run, dmdgoopt, flex, flex++, genpcz, lorellnma, m4, mc-eigen-mdweb.pl, mc-eigen.pl, nma_run, nmanu.pl, pca_anim_mc.pl, pcaunzip, pcazip, pcz_animate, pcz_bfactor, pcz_collectivity, pcz_evecs, pcz_hinges, pcz_info, pcz_lindemann, pcz_similarity, pcz_stiffness, pcz_unzip, pcz_zip, pczdump, yacc, aec, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff, hdp, hrepack, jpeg2hdf |
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GITHUB
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quay.io/biocontainers/biobb_godmd |
singularity registry hpc automated addition for biobb_godmd |
discrete, godmd_prep, godmd_run, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/biobb_gromacs |
singularity registry hpc automated addition for biobb_gromacs |
append_ligand, editconf, genion, genrestr, gmx, gmxselect, grompp, grompp_mdrun, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, make_ndx, mdrun, ndx2resttop, pdb2gmx, solvate, trjcat, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, normalizer, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
|
quay.io/biocontainers/biobb_haddock |
singularity registry hpc automated addition for biobb_haddock |
capri_eval, clust_fcc, em_ref, flex_ref, rigid_body, sele_top, topology, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, normalizer |
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GITHUB
|
quay.io/biocontainers/biobb_io |
shpc-registry automated BioContainers addition for biobb_io |
alphafold, api_binding_site, canonical_fasta, drugbank, ideal_sdf, ligand, memprotmd_sim, memprotmd_sim_list, memprotmd_sim_search, mmcif, pdb, pdb_cluster_zip, pdb_variants, structure_info, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/biobb_md |
shpc-registry automated BioContainers addition for biobb_md |
GMXRC, GMXRC.bash, GMXRC.csh, GMXRC.zsh, append_ligand, demux.pl, editconf, genion, genrestr, gmx, gmx-completion-gmx.bash, gmx-completion.bash, gmxselect, grompp, grompp_mdrun, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, make_ndx, mdrun, ndx2resttop, pdb2gmx, solvate, xplor2gmx.pl, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, normalizer, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7 |
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GITHUB
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quay.io/biocontainers/biobb_mem |
singularity registry hpc automated addition for biobb_mem |
AddToBox, CartHess2FC.py, ChBox, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, MMPBSA.py.MPI, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, ambmask, ambpdb, android_deploy.py, androiddeployqt6, ante-MMPBSA.py, antechamber, assistant6, atomtype, bar_pbsa.py, bln2gnu, bondtype, capost2gnu, car_to_files.py, ceinutil.py, cestats, charmmlipid2amber.py, cllayerinfo, cpeinutil.py, cphstats, cpinutil.py, cpptraj, cpptraj_density, deploy.py, designer6, draw_membrane2, edgembar, edgembar-WriteGraphHtml.py, edgembar-amber2dats.py, elsize, espgen, espgen.py, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gmx, grd2gnu, gsd, gwh, hcp_getpdb, hole, immers, labqpt, ldapadd, ldapcompare, ldapdelete, ldapexop, ldapmodify, ldapmodrdn, ldappasswd, ldapsearch, ldapurl, ldapvc, ldapwhoami, linguist6, lpp_assign_leaflets, makeANG_RST, makeCHIR_RST, makeCSA_RST.na, makeDIP_RST.protein, makeDIST_RST, makeRIGID_RST, make_crd_hg, make_post2gnu, make_post_map, mda_hole, mdgx, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metaobjectdump.py, metatwist, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, mrcfile-header, mrcfile-validate, ndfes, ndfes-AvgFESs.py, ndfes-CheckEquil.py, ndfes-CombineMetafiles.py, ndfes-FTSM-PrepareAnalysis.py, ndfes-FTSM-PrepareGuess.py, ndfes-FTSM-PrepareSims.py, ndfes-PrepareAmberData.py, ndfes-PrintFES.py, ndfes-PrintStringFES.py, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, pbsa, pdb4amber, pixeltool6, prepgen, process_mdout.perl, process_minout.perl, project.py, py_resp.py, pyresp_gen.py, pyside6-rcc, pyside6-uic, qdbus6, qdbusviewer6, qdistancefieldgenerator6, qdoc6, qmake6, qml.py, qml6, qmleasing6, qmlls6, qmlpreview6, qmlscene6, qplot, qpt_conv, qt6.conf, qtdiag6, qtplugininfo6, qtpy2cpp.py, quick, reduce, requirements-android.txt, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, shiboken6, shiboken_tool.py, simplepbsa, softcore_setup.py, sos_triangle, sph_process, sqm, sviol, sviol2, teLeap, test-api, tinker_to_amber, tleap, ucpp, vdwdot, vmd_triangles_to_lines, wayland-scanner, xaLeap, xleap, nc3tonc4, nc4tonc3, ncinfo, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, h5tools_test_utils, h5fuse.sh, cygdb, cython, cythonize, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch |
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GITHUB
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quay.io/biocontainers/biobb_ml |
shpc-registry automated BioContainers addition for biobb_ml |
agglomerative_clustering, agglomerative_coefficient, autoencoder_neural_network, classification_neural_network, classification_predict, clustering_predict, correlation_matrix, dbscan, decision_tree, dendrogram, drop_columns, dummy_variables, import_pb_to_tensorboard, k_means, k_means_coefficient, k_neighbors, k_neighbors_coefficient, linear_regression, logistic_regression, map_variables, neural_network_decode, neural_network_predict, oversampling, pairwise_comparison, pls_components, pls_regression, polynomial_regression, principal_component, random_forest_classifier, random_forest_regressor, recurrent_neural_network, regression_neural_network, regression_predict, resampling, scale_columns, spectral_clustering, spectral_coefficient, support_vector_machine, undersampling, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2 |
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GITHUB
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quay.io/biocontainers/biobb_model |
shpc-registry automated BioContainers addition for biobb_model |
check_structure, checking_log, fix_amides, fix_backbone, fix_chirality, fix_side_chain, mutate, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/biobb_pdb_tools |
singularity registry hpc automated addition for biobb_pdb_tools |
biobb_pdb_chain, biobb_pdb_chainxseg, biobb_pdb_delhetatm, biobb_pdb_fetch, biobb_pdb_merge, biobb_pdb_mkensemble, biobb_pdb_reres, biobb_pdb_seg, biobb_pdb_splitmodel, biobb_pdb_splitseg, biobb_pdb_tidy, biobb_pdb_tofasta, pdb_b, pdb_chain, pdb_chainbows, pdb_chainxseg, pdb_chkensemble, pdb_delchain, pdb_delelem, pdb_delhetatm, pdb_delinsertion, pdb_delres, pdb_delresname, pdb_element, pdb_fetch, pdb_fixinsert, pdb_fromcif, pdb_gap, pdb_head, pdb_intersect, pdb_keepcoord, pdb_merge, pdb_mkensemble, pdb_occ, pdb_reatom, pdb_reres, pdb_rplchain, pdb_rplresname, pdb_seg, pdb_segxchain, pdb_selaltloc, pdb_selatom, pdb_selchain, pdb_selelem, pdb_selhetatm, pdb_selmodel, pdb_selres, pdb_selresname, pdb_selseg, pdb_shiftres, pdb_sort, pdb_splitchain, pdb_splitmodel, pdb_splitseg, pdb_tidy, pdb_tocif, pdb_tofasta, pdb_uniqname, pdb_validate, pdb_wc, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, normalizer |
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GITHUB
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quay.io/biocontainers/biobb_pmx |
shpc-registry automated BioContainers addition for biobb_pmx |
pmx, pmxanalyse, pmxatom_mapping, pmxcreate_top, pmxgentop, pmxligand_hybrid, pmxmerge_ff, pmxmutate, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, futurize, pasteurize, f2py3.7, opj_compress |
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GITHUB
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quay.io/biocontainers/biobb_pytorch |
singularity registry hpc automated addition for biobb_pytorch |
apply_mdae, protoc-25.1.0, torch_shm_manager, train_mdae, torchrun, isympy, convert-caffe2-to-onnx, convert-onnx-to-caffe2, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, protoc, normalizer |
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GITHUB
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quay.io/biocontainers/biobb_remote |
singularity registry hpc automated addition for biobb_remote |
credentials, scp_service, slurm_test, ssh_command, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/biobb_structure_checking |
shpc-registry automated BioContainers addition for biobb_structure_checking |
check_structure, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/biobb_structure_manager |
shpc-registry automated BioContainers addition for biobb_structure_manager |
f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/biobb_structure_utils |
shpc-registry automated BioContainers addition for biobb_structure_utils |
cat_pdb, check_structure, closest_residues, extract_atoms, extract_chain, extract_heteroatoms, extract_model, extract_molecule, extract_residues, remove_ligand, remove_molecules, remove_pdb_water, renumber_structure, sort_gro_residues, str_check_add_hydrogens, structure_check, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/biobb_vs |
shpc-registry automated BioContainers addition for biobb_vs |
autodock_vina_run, bindingsite, box, box_residues, dpocket, extract_model_pdbqt, fpocket, fpocket_filter, fpocket_run, fpocket_select, mdpocket, tpocket, vina, vina_split, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
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GITHUB
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quay.io/biocontainers/biobb_wf_mutations |
shpc-registry automated BioContainers addition for biobb_wf_mutations |
GMXRC, GMXRC.bash, GMXRC.csh, GMXRC.zsh, bagit.py, demux.pl, editconf, fix_side_chain, genion, genrestr, gmx, gmx-completion-gmx.bash, gmx-completion.bash, grompp, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, jupyter-console, jupyter-qtconsole, lstopo, lstopo-no-graphics, make_ndx, mdrun, mutate, ndx2resttop, pdb, pdb2gmx, pdb_cluster_zip, pdb_variants, prov-compare, prov-convert, solvate, xplor2gmx.pl, cwltool, schema-salad-doc, schema-salad-tool, g-ir-doc-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, jupyter-bundlerextension |
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GITHUB
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quay.io/biocontainers/bioblend |
shpc-registry automated BioContainers addition for bioblend |
bioblend-galaxy-tests, x86_64-conda_cos7-linux-gnu-ld, normalizer, futurize, pasteurize, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/biobloomtools |
singularity registry hpc automated addition for biobloomtools |
biobloomcategorizer, biobloommaker, biobloommicategorizer, biobloommimaker |
|
GITHUB
|
quay.io/biocontainers/biobox_add_taxid |
singularity registry hpc automated addition for biobox_add_taxid |
biobox_add_taxid.py, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/biocamlib |
singularity registry hpc automated addition for biocamlib |
FASTools, Octopus, Parallel, RC |
|
GITHUB
|
quay.io/biocontainers/biocantor |
singularity registry hpc automated addition for biocantor |
gffutils-cli, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/biocode |
singularity registry hpc automated addition for biocode |
add_gff3_locus_tags.py, add_polypeptide_to_gff3_gene_models.py, append_to_column_9_value.py, append_to_fasta_header.py, append_to_fastq_read_header.py, calculate_gene_coverage_from_assembly.py, calculate_query_coverage_by_blast.py, check_for_embedded_fasta_headers.py, check_gff_for_internal_stops.py, compare_gene_structures.py, convert_aat_btab_to_gff3.py, convert_augustus_to_gff3.py, convert_blast_btab_to_bed.py, convert_blast_btab_to_gff3.py, convert_cegma_gff_to_gff3.py, convert_cufflinks_gtf_to_gff3.py, convert_fasta_contigs_to_gff3.py, convert_fastq_to_fasta.py, convert_genbank_to_gff3.py, convert_gff3_to_bed.py, convert_gff3_to_gbk.py, convert_gff3_to_gene_association_format.py, convert_gff3_to_ncbi_tbl.py, convert_gff_to_ncbi_gff3.py, convert_glimmerHMM_gff_to_gff3.py, convert_htab_to_bed.py, convert_metagenemark_gff_to_gff3.py, convert_pasa_gff_to_models.py, convert_prodigal_to_gff3.py, convert_scipio_gff_to_gff3.py, correct_gff3_CDS_phase_column.py, create_rsem_html_table.py, create_taxonomic_profile_from_blast.py, create_taxonomy_db.py, detect_inverted_repeats.py, download_assemblies_from_genbank.py, eggnog_to_sqlite3.py, extend_genes_to_stops.py, extract_fasta_regions.py, fasta_base_content.py, fasta_simple_stats.py, fasta_size_distribution_plot.py, fastq_simple_stats.py, filter_fasta_by_abundance.py, filter_fasta_by_header_regex.py, filter_fasta_by_type.py, filter_fastq_by_N_content.py, filter_gff3_by_id_list.py, filter_uniref_by_repid.py, filter_uniref_by_taxonomy.py, get_mpilup_from_id_list.py, hmmlib_to_sqlite3.py, interleave_fastq.py, join_columnar_files.py, list_biocode.py, make_cufflinks_ids_unique.py, make_go_index.py, make_go_slim.py, make_go_slim_index.py, mark_partial_genes.py, merge_bam_files.py, merge_fasta_files_and_uniquify_ids.py, merge_masked_fasta_files.py, merge_predicted_gff3.py, prepend_to_fasta_header.py, pwiz.py, randomly_subsample_fastq.py, reformat_fasta_residue_lengths.py, remove_duplicate_features.py, remove_duplicate_sequences.py, remove_masked_gene_models.py, remove_orphaned_features.py, reorient_sequences_by_id.py, replace_gff_type_column_value.py, replace_homopolymeric_repeats_with_Ns.py, report_basic_gff_model_agreement.py, report_coverage_gaps.py, report_gff3_statistics.py, report_gff_intron_and_intergenic_stats.py, report_go_slim_counts.py, report_or_replace_nonstandard_residues.py, reverse_misordered_cds_coords.py, select_training_and_evaluation_transcripts.py, set_source_column.py, split_fasta_into_even_files.py, split_interleaved_sequence_file.py, split_isoforms_into_individual_genes.py, split_molecules_on_gaps.py, subsample_fasta.py, taxadb, tigrfam_info_to_sqlite3.py, uniprot_sprot_to_sqlite3.py, uniref_to_sqlite3.py, update_selected_column9_values.py, validate_fasta.py, validate_feature_boundaries_on_molecules.py, write_fasta_from_gff.py, igraph, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis, ndmetis, glpsol, fonttools, pyftmerge, pyftsubset, ttx, normalizer, tqdm, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/biocommons.seqrepo |
shpc-registry automated BioContainers addition for biocommons.seqrepo |
pyppeteer-install, seqrepo, sqlformat, yoyo, yoyo-migrate, coloredlogs, humanfriendly, tabulate, normalizer, tqdm, xslt-config, xsltproc, 2to3-3.9, idle3.9, pydoc3.9 |
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GITHUB
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quay.io/biocontainers/bioconda-utils |
shpc-registry automated BioContainers addition for bioconda-utils |
anaconda, binstar, bioconda-utils, boa, bsdcat, bsdcpio, bsdtar, celery, conda-build, conda-convert, conda-debug, conda-develop, conda-index, conda-inspect, conda-mambabuild, conda-metapackage, conda-render, conda-server, conda-skeleton, conda-verify, conda2solv, dumpsolv, galaxy-tool-test, installcheck, involucro, mamba, mamba-package, mergesolv, mulled-build, mulled-build-channel, mulled-build-files, mulled-build-tool, mulled-search, patchelf, pkginfo, pyjson5, repo2solv, rg, scalar, skopeo, testsolv, watchgod, conda-env, cph, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, docutils |
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GITHUB
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quay.io/biocontainers/bioconda2biocontainer |
shpc-registry automated BioContainers addition for bioconda2biocontainer |
bioconda2biocontainer, bioconda2cwldocker, biocontainers-search, normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/bioconductor-a4 |
shpc-registry automated BioContainers addition for bioconductor-a4 |
|
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GITHUB
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quay.io/biocontainers/bioconductor-a4base |
shpc-registry automated BioContainers addition for bioconductor-a4base |
|
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GITHUB
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quay.io/biocontainers/bioconductor-a4classif |
shpc-registry automated BioContainers addition for bioconductor-a4classif |
|
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GITHUB
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quay.io/biocontainers/bioconductor-a4core |
shpc-registry automated BioContainers addition for bioconductor-a4core |
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GITHUB
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quay.io/biocontainers/bioconductor-a4preproc |
shpc-registry automated BioContainers addition for bioconductor-a4preproc |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-a4reporting |
shpc-registry automated BioContainers addition for bioconductor-a4reporting |
|
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GITHUB
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quay.io/biocontainers/bioconductor-abadata |
shpc-registry automated BioContainers addition for bioconductor-abadata |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-abaenrichment |
shpc-registry automated BioContainers addition for bioconductor-abaenrichment |
wget, ncurses5-config, ncursesw5-config |
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GITHUB
|
quay.io/biocontainers/bioconductor-abarray |
shpc-registry automated BioContainers addition for bioconductor-abarray |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-abseqr |
shpc-registry automated BioContainers addition for bioconductor-abseqr |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
|
quay.io/biocontainers/bioconductor-absseq |
shpc-registry automated BioContainers addition for bioconductor-absseq |
|
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GITHUB
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quay.io/biocontainers/bioconductor-acde |
shpc-registry automated BioContainers addition for bioconductor-acde |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
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GITHUB
|
quay.io/biocontainers/bioconductor-ace |
shpc-registry automated BioContainers addition for bioconductor-ace |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
|
quay.io/biocontainers/bioconductor-acgh |
shpc-registry automated BioContainers addition for bioconductor-acgh |
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GITHUB
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quay.io/biocontainers/bioconductor-acme |
shpc-registry automated BioContainers addition for bioconductor-acme |
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GITHUB
|
quay.io/biocontainers/bioconductor-adacgh2 |
shpc-registry automated BioContainers addition for bioconductor-adacgh2 |
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GITHUB
|
quay.io/biocontainers/bioconductor-adam |
shpc-registry automated BioContainers addition for bioconductor-adam |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-adamgui |
shpc-registry automated BioContainers addition for bioconductor-adamgui |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-adaptest |
shpc-registry automated BioContainers addition for bioconductor-adaptest |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-adductdata |
shpc-registry automated BioContainers addition for bioconductor-adductdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-adductomicsr |
shpc-registry automated BioContainers addition for bioconductor-adductomicsr |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-adimpute |
shpc-registry automated BioContainers addition for bioconductor-adimpute |
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GITHUB
|
quay.io/biocontainers/bioconductor-adme16cod.db |
shpc-registry automated BioContainers addition for bioconductor-adme16cod.db |
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GITHUB
|
quay.io/biocontainers/bioconductor-adsplit |
shpc-registry automated BioContainers addition for bioconductor-adsplit |
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GITHUB
|
quay.io/biocontainers/bioconductor-adverscarial |
singularity registry hpc automated addition for bioconductor-adverscarial |
pcre2posix_test, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-affixcan |
shpc-registry automated BioContainers addition for bioconductor-affixcan |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-affxparser |
shpc-registry automated BioContainers addition for bioconductor-affxparser |
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GITHUB
|
quay.io/biocontainers/bioconductor-affy |
shpc-registry automated BioContainers addition for bioconductor-affy |
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GITHUB
|
quay.io/biocontainers/bioconductor-affycomp |
shpc-registry automated BioContainers addition for bioconductor-affycomp |
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GITHUB
|
quay.io/biocontainers/bioconductor-affycompatible |
shpc-registry automated BioContainers addition for bioconductor-affycompatible |
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GITHUB
|
quay.io/biocontainers/bioconductor-affycompdata |
shpc-registry automated BioContainers addition for bioconductor-affycompdata |
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GITHUB
|
quay.io/biocontainers/bioconductor-affycontam |
shpc-registry automated BioContainers addition for bioconductor-affycontam |
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GITHUB
|
quay.io/biocontainers/bioconductor-affycoretools |
shpc-registry automated BioContainers addition for bioconductor-affycoretools |
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GITHUB
|
quay.io/biocontainers/bioconductor-affydata |
shpc-registry automated BioContainers addition for bioconductor-affydata |
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GITHUB
|
quay.io/biocontainers/bioconductor-affyexpress |
shpc-registry automated BioContainers addition for bioconductor-affyexpress |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
|
quay.io/biocontainers/bioconductor-affyhgu133a2expr |
shpc-registry automated BioContainers addition for bioconductor-affyhgu133a2expr |
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GITHUB
|
quay.io/biocontainers/bioconductor-affyhgu133aexpr |
shpc-registry automated BioContainers addition for bioconductor-affyhgu133aexpr |
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GITHUB
|
quay.io/biocontainers/bioconductor-affyhgu133plus2expr |
shpc-registry automated BioContainers addition for bioconductor-affyhgu133plus2expr |
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GITHUB
|
quay.io/biocontainers/bioconductor-affyilm |
shpc-registry automated BioContainers addition for bioconductor-affyilm |
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GITHUB
|
quay.io/biocontainers/bioconductor-affyio |
shpc-registry automated BioContainers addition for bioconductor-affyio |
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GITHUB
|
quay.io/biocontainers/bioconductor-affylmgui |
shpc-registry automated BioContainers addition for bioconductor-affylmgui |
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GITHUB
|
quay.io/biocontainers/bioconductor-affymetrixdatatestfiles |
shpc-registry automated BioContainers addition for bioconductor-affymetrixdatatestfiles |
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GITHUB
|
quay.io/biocontainers/bioconductor-affymoe4302expr |
shpc-registry automated BioContainers addition for bioconductor-affymoe4302expr |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-affypara |
shpc-registry automated BioContainers addition for bioconductor-affypara |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-affypdnn |
shpc-registry automated BioContainers addition for bioconductor-affypdnn |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-affyplm |
shpc-registry automated BioContainers addition for bioconductor-affyplm |
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GITHUB
|
quay.io/biocontainers/bioconductor-affyqcreport |
shpc-registry automated BioContainers addition for bioconductor-affyqcreport |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-affyrnadegradation |
shpc-registry automated BioContainers addition for bioconductor-affyrnadegradation |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ag.db |
shpc-registry automated BioContainers addition for bioconductor-ag.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-agcdf |
shpc-registry automated BioContainers addition for bioconductor-agcdf |
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GITHUB
|
quay.io/biocontainers/bioconductor-agdex |
shpc-registry automated BioContainers addition for bioconductor-agdex |
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GITHUB
|
quay.io/biocontainers/bioconductor-aggregatebiovar |
shpc-registry automated BioContainers addition for bioconductor-aggregatebiovar |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-agilp |
shpc-registry automated BioContainers addition for bioconductor-agilp |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-agimicrorna |
shpc-registry automated BioContainers addition for bioconductor-agimicrorna |
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GITHUB
|
quay.io/biocontainers/bioconductor-agprobe |
shpc-registry automated BioContainers addition for bioconductor-agprobe |
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GITHUB
|
quay.io/biocontainers/bioconductor-ahcytobands |
shpc-registry automated BioContainers addition for bioconductor-ahcytobands |
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GITHUB
|
quay.io/biocontainers/bioconductor-ahensdbs |
shpc-registry automated BioContainers addition for bioconductor-ahensdbs |
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GITHUB
|
quay.io/biocontainers/bioconductor-ahlrbasedbs |
shpc-registry automated BioContainers addition for bioconductor-ahlrbasedbs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ahmassbank |
singularity registry hpc automated addition for bioconductor-ahmassbank |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
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GITHUB
|
quay.io/biocontainers/bioconductor-ahmeshdbs |
shpc-registry automated BioContainers addition for bioconductor-ahmeshdbs |
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GITHUB
|
quay.io/biocontainers/bioconductor-ahpathbankdbs |
shpc-registry automated BioContainers addition for bioconductor-ahpathbankdbs |
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GITHUB
|
quay.io/biocontainers/bioconductor-ahpubmeddbs |
shpc-registry automated BioContainers addition for bioconductor-ahpubmeddbs |
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GITHUB
|
quay.io/biocontainers/bioconductor-ahwikipathwaysdbs |
shpc-registry automated BioContainers addition for bioconductor-ahwikipathwaysdbs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-aims |
shpc-registry automated BioContainers addition for bioconductor-aims |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-airpart |
shpc-registry automated BioContainers addition for bioconductor-airpart |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-airway |
shpc-registry automated BioContainers addition for bioconductor-airway |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.base |
singularity registry hpc automated addition for bioconductor-alabaster.base |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.bumpy |
singularity registry hpc automated addition for bioconductor-alabaster.bumpy |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.files |
singularity registry hpc automated addition for bioconductor-alabaster.files |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.mae |
singularity registry hpc automated addition for bioconductor-alabaster.mae |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.matrix |
singularity registry hpc automated addition for bioconductor-alabaster.matrix |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.ranges |
singularity registry hpc automated addition for bioconductor-alabaster.ranges |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.sce |
singularity registry hpc automated addition for bioconductor-alabaster.sce |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.schemas |
singularity registry hpc automated addition for bioconductor-alabaster.schemas |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.se |
singularity registry hpc automated addition for bioconductor-alabaster.se |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.spatial |
singularity registry hpc automated addition for bioconductor-alabaster.spatial |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, hb-info, dvipdf, eps2eps, gs, gsbj, gsdj |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.string |
singularity registry hpc automated addition for bioconductor-alabaster.string |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alabaster.vcf |
singularity registry hpc automated addition for bioconductor-alabaster.vcf |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-aldex2 |
shpc-registry automated BioContainers addition for bioconductor-aldex2 |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alevinqc |
shpc-registry automated BioContainers addition for bioconductor-alevinqc |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-all |
shpc-registry automated BioContainers addition for bioconductor-all |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-allelicimbalance |
shpc-registry automated BioContainers addition for bioconductor-allelicimbalance |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-allenpvc |
shpc-registry automated BioContainers addition for bioconductor-allenpvc |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-allmll |
shpc-registry automated BioContainers addition for bioconductor-allmll |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-alphabeta |
shpc-registry automated BioContainers addition for bioconductor-alphabeta |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-alphamissense.v2023.hg19 |
singularity registry hpc automated addition for bioconductor-alphamissense.v2023.hg19 |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alphamissense.v2023.hg38 |
singularity registry hpc automated addition for bioconductor-alphamissense.v2023.hg38 |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alpine |
shpc-registry automated BioContainers addition for bioconductor-alpine |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alpinedata |
shpc-registry automated BioContainers addition for bioconductor-alpinedata |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alps |
shpc-registry automated BioContainers addition for bioconductor-alps |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alpsnmr |
shpc-registry automated BioContainers addition for bioconductor-alpsnmr |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-alsace |
shpc-registry automated BioContainers addition for bioconductor-alsace |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-altcdfenvs |
shpc-registry automated BioContainers addition for bioconductor-altcdfenvs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-alternativesplicingevents.hg19 |
shpc-registry automated BioContainers addition for bioconductor-alternativesplicingevents.hg19 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-alternativesplicingevents.hg38 |
shpc-registry automated BioContainers addition for bioconductor-alternativesplicingevents.hg38 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-amaretto |
shpc-registry automated BioContainers addition for bioconductor-amaretto |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-amountain |
shpc-registry automated BioContainers addition for bioconductor-amountain |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ampaffyexample |
shpc-registry automated BioContainers addition for bioconductor-ampaffyexample |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-amplican |
shpc-registry automated BioContainers addition for bioconductor-amplican |
pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ampliqueso |
shpc-registry automated BioContainers addition for bioconductor-ampliqueso |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-analysispageserver |
shpc-registry automated BioContainers addition for bioconductor-analysispageserver |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-anamir |
shpc-registry automated BioContainers addition for bioconductor-anamir |
gdalserver, pg_verify_checksums, testepsg, pg_standby, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, dap-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-anaquin |
shpc-registry automated BioContainers addition for bioconductor-anaquin |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ancombc |
shpc-registry automated BioContainers addition for bioconductor-ancombc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-aneufinder |
shpc-registry automated BioContainers addition for bioconductor-aneufinder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-aneufinderdata |
shpc-registry automated BioContainers addition for bioconductor-aneufinderdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-anf |
shpc-registry automated BioContainers addition for bioconductor-anf |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-animalcules |
shpc-registry automated BioContainers addition for bioconductor-animalcules |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-annaffy |
shpc-registry automated BioContainers addition for bioconductor-annaffy |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-annmap |
shpc-registry automated BioContainers addition for bioconductor-annmap |
my_print_defaults, mysql_config, perror |
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotate |
shpc-registry automated BioContainers addition for bioconductor-annotate |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotationdbi |
shpc-registry automated BioContainers addition for bioconductor-annotationdbi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotationfilter |
shpc-registry automated BioContainers addition for bioconductor-annotationfilter |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotationforge |
shpc-registry automated BioContainers addition for bioconductor-annotationforge |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotationfuncs |
shpc-registry automated BioContainers addition for bioconductor-annotationfuncs |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotationhub |
shpc-registry automated BioContainers addition for bioconductor-annotationhub |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotationhubdata |
shpc-registry automated BioContainers addition for bioconductor-annotationhubdata |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotationtools |
shpc-registry automated BioContainers addition for bioconductor-annotationtools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-annotatr |
shpc-registry automated BioContainers addition for bioconductor-annotatr |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-anopheles.db0 |
shpc-registry automated BioContainers addition for bioconductor-anopheles.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-anota |
shpc-registry automated BioContainers addition for bioconductor-anota |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-anota2seq |
shpc-registry automated BioContainers addition for bioconductor-anota2seq |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-antiprofiles |
shpc-registry automated BioContainers addition for bioconductor-antiprofiles |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-antiprofilesdata |
shpc-registry automated BioContainers addition for bioconductor-antiprofilesdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-anvil |
shpc-registry automated BioContainers addition for bioconductor-anvil |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-anvilbilling |
shpc-registry automated BioContainers addition for bioconductor-anvilbilling |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-anvilpublish |
shpc-registry automated BioContainers addition for bioconductor-anvilpublish |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-anvilworkflow |
singularity registry hpc automated addition for bioconductor-anvilworkflow |
hb-info, tjbench, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-apalyzer |
shpc-registry automated BioContainers addition for bioconductor-apalyzer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-apcomplex |
shpc-registry automated BioContainers addition for bioconductor-apcomplex |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-apeglm |
shpc-registry automated BioContainers addition for bioconductor-apeglm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-apl |
singularity registry hpc automated addition for bioconductor-apl |
geosop, geos-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-appreci8r |
shpc-registry automated BioContainers addition for bioconductor-appreci8r |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-arabidopsis.db0 |
shpc-registry automated BioContainers addition for bioconductor-arabidopsis.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-aracne.networks |
shpc-registry automated BioContainers addition for bioconductor-aracne.networks |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-aroma.light |
shpc-registry automated BioContainers addition for bioconductor-aroma.light |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-arrayexpress |
shpc-registry automated BioContainers addition for bioconductor-arrayexpress |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-arrayexpresshts |
shpc-registry automated BioContainers addition for bioconductor-arrayexpresshts |
jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/bioconductor-arraymvout |
shpc-registry automated BioContainers addition for bioconductor-arraymvout |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-arrayquality |
shpc-registry automated BioContainers addition for bioconductor-arrayquality |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-arrayqualitymetrics |
shpc-registry automated BioContainers addition for bioconductor-arrayqualitymetrics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-arraytools |
shpc-registry automated BioContainers addition for bioconductor-arraytools |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-arraytv |
shpc-registry automated BioContainers addition for bioconductor-arraytv |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-arrmdata |
shpc-registry automated BioContainers addition for bioconductor-arrmdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-arrmnormalization |
shpc-registry automated BioContainers addition for bioconductor-arrmnormalization |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-artms |
shpc-registry automated BioContainers addition for bioconductor-artms |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-asafe |
shpc-registry automated BioContainers addition for bioconductor-asafe |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-aseb |
shpc-registry automated BioContainers addition for bioconductor-aseb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-asgsca |
shpc-registry automated BioContainers addition for bioconductor-asgsca |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ashkenazimsonchr21 |
shpc-registry automated BioContainers addition for bioconductor-ashkenazimsonchr21 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-asics |
shpc-registry automated BioContainers addition for bioconductor-asics |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-asicsdata |
shpc-registry automated BioContainers addition for bioconductor-asicsdata |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-aspediafi |
shpc-registry automated BioContainers addition for bioconductor-aspediafi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-aspli |
shpc-registry automated BioContainers addition for bioconductor-aspli |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-assessorf |
shpc-registry automated BioContainers addition for bioconductor-assessorf |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-assessorfdata |
shpc-registry automated BioContainers addition for bioconductor-assessorfdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-asset |
shpc-registry automated BioContainers addition for bioconductor-asset |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-assign |
shpc-registry automated BioContainers addition for bioconductor-assign |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-asurat |
singularity registry hpc automated addition for bioconductor-asurat |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ataccogaps |
singularity registry hpc automated addition for bioconductor-ataccogaps |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, pandoc, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-atacseqqc |
shpc-registry automated BioContainers addition for bioconductor-atacseqqc |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-atacseqtfea |
singularity registry hpc automated addition for bioconductor-atacseqtfea |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-atena |
shpc-registry automated BioContainers addition for bioconductor-atena |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ath1121501.db |
shpc-registry automated BioContainers addition for bioconductor-ath1121501.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ath1121501cdf |
shpc-registry automated BioContainers addition for bioconductor-ath1121501cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ath1121501probe |
shpc-registry automated BioContainers addition for bioconductor-ath1121501probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-atlasrdf |
shpc-registry automated BioContainers addition for bioconductor-atlasrdf |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-atsnp |
shpc-registry automated BioContainers addition for bioconductor-atsnp |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-attract |
shpc-registry automated BioContainers addition for bioconductor-attract |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-aucell |
shpc-registry automated BioContainers addition for bioconductor-aucell |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-autonomics |
shpc-registry automated BioContainers addition for bioconductor-autonomics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-autotuner |
shpc-registry automated BioContainers addition for bioconductor-autotuner |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-awfisher |
shpc-registry automated BioContainers addition for bioconductor-awfisher |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-awst |
shpc-registry automated BioContainers addition for bioconductor-awst |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-baalchip |
shpc-registry automated BioContainers addition for bioconductor-baalchip |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bac |
shpc-registry automated BioContainers addition for bioconductor-bac |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bacon |
shpc-registry automated BioContainers addition for bioconductor-bacon |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bader |
shpc-registry automated BioContainers addition for bioconductor-bader |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-badregionfinder |
shpc-registry automated BioContainers addition for bioconductor-badregionfinder |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bags |
shpc-registry automated BioContainers addition for bioconductor-bags |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ballgown |
shpc-registry automated BioContainers addition for bioconductor-ballgown |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bambu |
shpc-registry automated BioContainers addition for bioconductor-bambu |
xgboost |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bamsignals |
shpc-registry automated BioContainers addition for bioconductor-bamsignals |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bandits |
shpc-registry automated BioContainers addition for bioconductor-bandits |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bandle |
singularity registry hpc automated addition for bioconductor-bandle |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff, hdp, hrepack, jpeg2hdf, paltohdf |
|
GITHUB
|
quay.io/biocontainers/bioconductor-banocc |
shpc-registry automated BioContainers addition for bioconductor-banocc |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-barcodetrackr |
shpc-registry automated BioContainers addition for bioconductor-barcodetrackr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-barley1cdf |
shpc-registry automated BioContainers addition for bioconductor-barley1cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-barley1probe |
shpc-registry automated BioContainers addition for bioconductor-barley1probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-basecallqc |
shpc-registry automated BioContainers addition for bioconductor-basecallqc |
pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-basespacer |
shpc-registry automated BioContainers addition for bioconductor-basespacer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-basic4cseq |
shpc-registry automated BioContainers addition for bioconductor-basic4cseq |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-basics |
shpc-registry automated BioContainers addition for bioconductor-basics |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-basicstan |
singularity registry hpc automated addition for bioconductor-basicstan |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-basicstarrseq |
shpc-registry automated BioContainers addition for bioconductor-basicstarrseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-basilisk |
shpc-registry automated BioContainers addition for bioconductor-basilisk |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-basilisk.utils |
shpc-registry automated BioContainers addition for bioconductor-basilisk.utils |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-batchelor |
shpc-registry automated BioContainers addition for bioconductor-batchelor |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-batchqc |
shpc-registry automated BioContainers addition for bioconductor-batchqc |
pandoc-citeproc, pandoc, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bayesknockdown |
shpc-registry automated BioContainers addition for bioconductor-bayesknockdown |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bayespeak |
shpc-registry automated BioContainers addition for bioconductor-bayespeak |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bayesspace |
shpc-registry automated BioContainers addition for bioconductor-bayesspace |
xgboost, glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-baynorm |
shpc-registry automated BioContainers addition for bioconductor-baynorm |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bayseq |
shpc-registry automated BioContainers addition for bioconductor-bayseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bbcanalyzer |
shpc-registry automated BioContainers addition for bioconductor-bbcanalyzer |
my_print_defaults, mysql_config, perror, wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bcellviper |
shpc-registry automated BioContainers addition for bioconductor-bcellviper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bcrank |
shpc-registry automated BioContainers addition for bioconductor-bcrank |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bcseq |
shpc-registry automated BioContainers addition for bioconductor-bcseq |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bdmmacorrect |
shpc-registry automated BioContainers addition for bioconductor-bdmmacorrect |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-beachmat.hdf5 |
singularity registry hpc automated addition for bioconductor-beachmat.hdf5 |
pcre2posix_test, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-beachmat |
shpc-registry automated BioContainers addition for bioconductor-beachmat |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-beadarray |
shpc-registry automated BioContainers addition for bioconductor-beadarray |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-beadarrayexampledata |
shpc-registry automated BioContainers addition for bioconductor-beadarrayexampledata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-beadarraysnp |
shpc-registry automated BioContainers addition for bioconductor-beadarraysnp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-beadarrayusecases |
shpc-registry automated BioContainers addition for bioconductor-beadarrayusecases |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-beaddatapackr |
shpc-registry automated BioContainers addition for bioconductor-beaddatapackr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-beadsorted.saliva.epic |
shpc-registry automated BioContainers addition for bioconductor-beadsorted.saliva.epic |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bearscc |
shpc-registry automated BioContainers addition for bioconductor-bearscc |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-beat |
shpc-registry automated BioContainers addition for bioconductor-beat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-beclear |
shpc-registry automated BioContainers addition for bioconductor-beclear |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-beer |
singularity registry hpc automated addition for bioconductor-beer |
jags, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-benchdamic |
shpc-registry automated BioContainers addition for bioconductor-benchdamic |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-benchmarkfdrdata2019 |
shpc-registry automated BioContainers addition for bioconductor-benchmarkfdrdata2019 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-beta7 |
shpc-registry automated BioContainers addition for bioconductor-beta7 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bg2 |
singularity registry hpc automated addition for bioconductor-bg2 |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bgafun |
shpc-registry automated BioContainers addition for bioconductor-bgafun |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bgeecall |
shpc-registry automated BioContainers addition for bioconductor-bgeecall |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bgeedb |
shpc-registry automated BioContainers addition for bioconductor-bgeedb |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bgmix |
shpc-registry automated BioContainers addition for bioconductor-bgmix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bgx |
shpc-registry automated BioContainers addition for bioconductor-bgx |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bhc |
shpc-registry automated BioContainers addition for bioconductor-bhc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bicare |
shpc-registry automated BioContainers addition for bioconductor-bicare |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bifet |
shpc-registry automated BioContainers addition for bioconductor-bifet |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biggr |
shpc-registry automated BioContainers addition for bioconductor-biggr |
diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bigmelon |
shpc-registry automated BioContainers addition for bioconductor-bigmelon |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bigmemoryextras |
shpc-registry automated BioContainers addition for bioconductor-bigmemoryextras |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bigpint |
shpc-registry automated BioContainers addition for bioconductor-bigpint |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bindingsitefinder |
shpc-registry automated BioContainers addition for bioconductor-bindingsitefinder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioassayr |
shpc-registry automated BioContainers addition for bioconductor-bioassayr |
rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biobase |
shpc-registry automated BioContainers addition for bioconductor-biobase |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biobroom |
shpc-registry automated BioContainers addition for bioconductor-biobroom |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biobtreer |
shpc-registry automated BioContainers addition for bioconductor-biobtreer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocancer |
shpc-registry automated BioContainers addition for bioconductor-biocancer |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocartaimage |
singularity registry hpc automated addition for bioconductor-biocartaimage |
pcre2posix_test, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, display, identify, import, magick, magick-script, mogrify, montage, convert, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocbaseutils |
singularity registry hpc automated addition for bioconductor-biocbaseutils |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocbook |
singularity registry hpc automated addition for bioconductor-biocbook |
deno, esbuild, quarto, quarto.js, sass, git2, pcre2posix_test, hb-info, tjbench, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioccasestudies |
shpc-registry automated BioContainers addition for bioconductor-bioccasestudies |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioccheck |
shpc-registry automated BioContainers addition for bioconductor-bioccheck |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocdockermanager |
shpc-registry automated BioContainers addition for bioconductor-biocdockermanager |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocfhir |
singularity registry hpc automated addition for bioconductor-biocfhir |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocfilecache |
shpc-registry automated BioContainers addition for bioconductor-biocfilecache |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocgenerics |
shpc-registry automated BioContainers addition for bioconductor-biocgenerics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocgraph |
shpc-registry automated BioContainers addition for bioconductor-biocgraph |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biochail |
singularity registry hpc automated addition for bioconductor-biochail |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biochubsshiny |
singularity registry hpc automated addition for bioconductor-biochubsshiny |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocinstaller |
shpc-registry automated BioContainers addition for bioconductor-biocinstaller |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocio |
shpc-registry automated BioContainers addition for bioconductor-biocio |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocneighbors |
shpc-registry automated BioContainers addition for bioconductor-biocneighbors |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioconcotk |
shpc-registry automated BioContainers addition for bioconductor-bioconcotk |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocor |
shpc-registry automated BioContainers addition for bioconductor-biocor |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocparallel |
shpc-registry automated BioContainers addition for bioconductor-biocparallel |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocpkgtools |
shpc-registry automated BioContainers addition for bioconductor-biocpkgtools |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocset |
shpc-registry automated BioContainers addition for bioconductor-biocset |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocsingular |
shpc-registry automated BioContainers addition for bioconductor-biocsingular |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocsklearn |
shpc-registry automated BioContainers addition for bioconductor-biocsklearn |
f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, h5clear |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocstyle |
shpc-registry automated BioContainers addition for bioconductor-biocstyle |
pandoc-citeproc, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocthis |
shpc-registry automated BioContainers addition for bioconductor-biocthis |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocversion |
shpc-registry automated BioContainers addition for bioconductor-biocversion |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocviews |
shpc-registry automated BioContainers addition for bioconductor-biocviews |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biocworkflowtools |
shpc-registry automated BioContainers addition for bioconductor-biocworkflowtools |
pandoc-citeproc, pandoc, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodb |
shpc-registry automated BioContainers addition for bioconductor-biodb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbchebi |
shpc-registry automated BioContainers addition for bioconductor-biodbchebi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbexpasy |
singularity registry hpc automated addition for bioconductor-biodbexpasy |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbhmdb |
shpc-registry automated BioContainers addition for bioconductor-biodbhmdb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbkegg |
shpc-registry automated BioContainers addition for bioconductor-biodbkegg |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodblipidmaps |
shpc-registry automated BioContainers addition for bioconductor-biodblipidmaps |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbmirbase |
singularity registry hpc automated addition for bioconductor-biodbmirbase |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbncbi |
singularity registry hpc automated addition for bioconductor-biodbncbi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbnci |
singularity registry hpc automated addition for bioconductor-biodbnci |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodbuniprot |
shpc-registry automated BioContainers addition for bioconductor-biodbuniprot |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biodist |
shpc-registry automated BioContainers addition for bioconductor-biodist |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioimagedbs |
shpc-registry automated BioContainers addition for bioconductor-bioimagedbs |
SvtAv1DecApp, SvtAv1EncApp, aomdec, aomenc, asn1Coding, asn1Decoding, asn1Parser, ffmpeg, ffprobe, h264dec, h264enc, lame, p11-kit, p11tool, trust, vpxdec, vpxenc, x264, x265, pandoc-server, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biomart |
shpc-registry automated BioContainers addition for bioconductor-biomart |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biomartgogenesets |
singularity registry hpc automated addition for bioconductor-biomartgogenesets |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biomformat |
shpc-registry automated BioContainers addition for bioconductor-biomformat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biomm |
shpc-registry automated BioContainers addition for bioconductor-biomm |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biomvcclass |
shpc-registry automated BioContainers addition for bioconductor-biomvcclass |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biomvrcns |
shpc-registry automated BioContainers addition for bioconductor-biomvrcns |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bionar |
singularity registry hpc automated addition for bioconductor-bionar |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bionero |
shpc-registry automated BioContainers addition for bioconductor-bionero |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bionet |
shpc-registry automated BioContainers addition for bioconductor-bionet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bionetstat |
shpc-registry automated BioContainers addition for bioconductor-bionetstat |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioplex |
shpc-registry automated BioContainers addition for bioconductor-bioplex |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioqc |
shpc-registry automated BioContainers addition for bioconductor-bioqc |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bioseqclass |
shpc-registry automated BioContainers addition for bioconductor-bioseqclass |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biosigner |
shpc-registry automated BioContainers addition for bioconductor-biosigner |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biostrings |
shpc-registry automated BioContainers addition for bioconductor-biostrings |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biosvd |
shpc-registry automated BioContainers addition for bioconductor-biosvd |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biotip |
shpc-registry automated BioContainers addition for bioconductor-biotip |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biotmle |
shpc-registry automated BioContainers addition for bioconductor-biotmle |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biotmledata |
shpc-registry automated BioContainers addition for bioconductor-biotmledata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biovizbase |
shpc-registry automated BioContainers addition for bioconductor-biovizbase |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-birewire |
shpc-registry automated BioContainers addition for bioconductor-birewire |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-birta |
shpc-registry automated BioContainers addition for bioconductor-birta |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-birte |
shpc-registry automated BioContainers addition for bioconductor-birte |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-biscuiteer |
shpc-registry automated BioContainers addition for bioconductor-biscuiteer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biscuiteerdata |
shpc-registry automated BioContainers addition for bioconductor-biscuiteerdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-biseq |
shpc-registry automated BioContainers addition for bioconductor-biseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bitseq |
shpc-registry automated BioContainers addition for bioconductor-bitseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-blacksheepr |
shpc-registry automated BioContainers addition for bioconductor-blacksheepr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bladderbatch |
shpc-registry automated BioContainers addition for bioconductor-bladderbatch |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-blima |
shpc-registry automated BioContainers addition for bioconductor-blima |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-blimatestingdata |
shpc-registry automated BioContainers addition for bioconductor-blimatestingdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-blma |
shpc-registry automated BioContainers addition for bioconductor-blma |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bloodcancermultiomics2017 |
shpc-registry automated BioContainers addition for bioconductor-bloodcancermultiomics2017 |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bloodgen3module |
shpc-registry automated BioContainers addition for bioconductor-bloodgen3module |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bluster |
shpc-registry automated BioContainers addition for bioconductor-bluster |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bnbc |
shpc-registry automated BioContainers addition for bioconductor-bnbc |
mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, mpifort, mpic++, mpicc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bnem |
shpc-registry automated BioContainers addition for bioconductor-bnem |
diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bobafit |
singularity registry hpc automated addition for bioconductor-bobafit |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bodymaprat |
shpc-registry automated BioContainers addition for bioconductor-bodymaprat |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-borealis |
singularity registry hpc automated addition for bioconductor-borealis |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bovine.db |
shpc-registry automated BioContainers addition for bioconductor-bovine.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bovine.db0 |
shpc-registry automated BioContainers addition for bioconductor-bovine.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bovinecdf |
shpc-registry automated BioContainers addition for bioconductor-bovinecdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bovineprobe |
shpc-registry automated BioContainers addition for bioconductor-bovineprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bprmeth |
shpc-registry automated BioContainers addition for bioconductor-bprmeth |
pandoc-citeproc, pandoc, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-brain |
shpc-registry automated BioContainers addition for bioconductor-brain |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-brainflowprobes |
shpc-registry automated BioContainers addition for bioconductor-brainflowprobes |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-brainimager |
shpc-registry automated BioContainers addition for bioconductor-brainimager |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-brainimagerdata |
shpc-registry automated BioContainers addition for bioconductor-brainimagerdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-brainsaber |
shpc-registry automated BioContainers addition for bioconductor-brainsaber |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-brainstars |
shpc-registry automated BioContainers addition for bioconductor-brainstars |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-branchpointer |
shpc-registry automated BioContainers addition for bioconductor-branchpointer |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-breakpointr |
shpc-registry automated BioContainers addition for bioconductor-breakpointr |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-breakpointrdata |
shpc-registry automated BioContainers addition for bioconductor-breakpointrdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-breastcancermainz |
shpc-registry automated BioContainers addition for bioconductor-breastcancermainz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-breastcancernki |
shpc-registry automated BioContainers addition for bioconductor-breastcancernki |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-breastcancertransbig |
shpc-registry automated BioContainers addition for bioconductor-breastcancertransbig |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-breastcancerunt |
shpc-registry automated BioContainers addition for bioconductor-breastcancerunt |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-breastcancerupp |
shpc-registry automated BioContainers addition for bioconductor-breastcancerupp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-breastcancervdx |
shpc-registry automated BioContainers addition for bioconductor-breastcancervdx |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-brendadb |
shpc-registry automated BioContainers addition for bioconductor-brendadb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-brgedata |
shpc-registry automated BioContainers addition for bioconductor-brgedata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-brgenomics |
shpc-registry automated BioContainers addition for bioconductor-brgenomics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bridge |
shpc-registry automated BioContainers addition for bioconductor-bridge |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bridgedbr |
shpc-registry automated BioContainers addition for bioconductor-bridgedbr |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bronchialil13 |
shpc-registry automated BioContainers addition for bioconductor-bronchialil13 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-browserviz |
shpc-registry automated BioContainers addition for bioconductor-browserviz |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-browservizdemo |
shpc-registry automated BioContainers addition for bioconductor-browservizdemo |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bsgenome |
shpc-registry automated BioContainers addition for bioconductor-bsgenome |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bsseq |
shpc-registry automated BioContainers addition for bioconductor-bsseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bsseqdata |
shpc-registry automated BioContainers addition for bioconductor-bsseqdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bsubtiliscdf |
shpc-registry automated BioContainers addition for bioconductor-bsubtiliscdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bsubtilisprobe |
shpc-registry automated BioContainers addition for bioconductor-bsubtilisprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bubbletree |
shpc-registry automated BioContainers addition for bioconductor-bubbletree |
pandoc-citeproc, pandoc, wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bufferedmatrix |
shpc-registry automated BioContainers addition for bioconductor-bufferedmatrix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bufferedmatrixmethods |
shpc-registry automated BioContainers addition for bioconductor-bufferedmatrixmethods |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bugsigdbr |
shpc-registry automated BioContainers addition for bioconductor-bugsigdbr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bumhmm |
shpc-registry automated BioContainers addition for bioconductor-bumhmm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-bumphunter |
shpc-registry automated BioContainers addition for bioconductor-bumphunter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bumpymatrix |
shpc-registry automated BioContainers addition for bioconductor-bumpymatrix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-bus |
shpc-registry automated BioContainers addition for bioconductor-bus |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-buscorrect |
shpc-registry automated BioContainers addition for bioconductor-buscorrect |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-busparse |
shpc-registry automated BioContainers addition for bioconductor-busparse |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-busseq |
shpc-registry automated BioContainers addition for bioconductor-busseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cadd.v1.6.hg19 |
singularity registry hpc automated addition for bioconductor-cadd.v1.6.hg19 |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cadd.v1.6.hg38 |
singularity registry hpc automated addition for bioconductor-cadd.v1.6.hg38 |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cadra |
singularity registry hpc automated addition for bioconductor-cadra |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-caen |
shpc-registry automated BioContainers addition for bioconductor-caen |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cafe |
shpc-registry automated BioContainers addition for bioconductor-cafe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cagefightr |
shpc-registry automated BioContainers addition for bioconductor-cagefightr |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cageminer |
shpc-registry automated BioContainers addition for bioconductor-cageminer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cager |
shpc-registry automated BioContainers addition for bioconductor-cager |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-calib |
shpc-registry automated BioContainers addition for bioconductor-calib |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-calm |
shpc-registry automated BioContainers addition for bioconductor-calm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-camera |
shpc-registry automated BioContainers addition for bioconductor-camera |
zipcmp, zipmerge, ziptool, gif2hdf, glpsol, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-camthc |
shpc-registry automated BioContainers addition for bioconductor-camthc |
extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cancerclass |
shpc-registry automated BioContainers addition for bioconductor-cancerclass |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cancerdata |
shpc-registry automated BioContainers addition for bioconductor-cancerdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cancerinsilico |
shpc-registry automated BioContainers addition for bioconductor-cancerinsilico |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cancermutationanalysis |
shpc-registry automated BioContainers addition for bioconductor-cancermutationanalysis |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cancersubtypes |
shpc-registry automated BioContainers addition for bioconductor-cancersubtypes |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cand |
shpc-registry automated BioContainers addition for bioconductor-cand |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-canine.db |
shpc-registry automated BioContainers addition for bioconductor-canine.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-canine.db0 |
shpc-registry automated BioContainers addition for bioconductor-canine.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-canine2.db |
shpc-registry automated BioContainers addition for bioconductor-canine2.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-canine2cdf |
shpc-registry automated BioContainers addition for bioconductor-canine2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-canine2probe |
shpc-registry automated BioContainers addition for bioconductor-canine2probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-caninecdf |
shpc-registry automated BioContainers addition for bioconductor-caninecdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-canineprobe |
shpc-registry automated BioContainers addition for bioconductor-canineprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-caomicsv |
shpc-registry automated BioContainers addition for bioconductor-caomicsv |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cardelino |
singularity registry hpc automated addition for bioconductor-cardelino |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cardinal |
shpc-registry automated BioContainers addition for bioconductor-cardinal |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cardinalio |
singularity registry hpc automated addition for bioconductor-cardinalio |
pcre2posix_test, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cardinalworkflows |
shpc-registry automated BioContainers addition for bioconductor-cardinalworkflows |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-carnival |
shpc-registry automated BioContainers addition for bioconductor-carnival |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-casper |
shpc-registry automated BioContainers addition for bioconductor-casper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-catalyst |
shpc-registry automated BioContainers addition for bioconductor-catalyst |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-category |
shpc-registry automated BioContainers addition for bioconductor-category |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-categorycompare |
shpc-registry automated BioContainers addition for bioconductor-categorycompare |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage |
|
GITHUB
|
quay.io/biocontainers/bioconductor-causalr |
shpc-registry automated BioContainers addition for bioconductor-causalr |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cbaf |
shpc-registry automated BioContainers addition for bioconductor-cbaf |
extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cbea |
singularity registry hpc automated addition for bioconductor-cbea |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cbioportaldata |
shpc-registry automated BioContainers addition for bioconductor-cbioportaldata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cbnplot |
singularity registry hpc automated addition for bioconductor-cbnplot |
hb-info, tjbench, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cbpmanager |
shpc-registry automated BioContainers addition for bioconductor-cbpmanager |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccdata |
shpc-registry automated BioContainers addition for bioconductor-ccdata |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccfindr |
shpc-registry automated BioContainers addition for bioconductor-ccfindr |
aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info, opal_wrapper, orte-clean, orte-info, orte-server |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccimpute |
singularity registry hpc automated addition for bioconductor-ccimpute |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccl4 |
shpc-registry automated BioContainers addition for bioconductor-ccl4 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccmap |
shpc-registry automated BioContainers addition for bioconductor-ccmap |
xgboost, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccplotr |
singularity registry hpc automated addition for bioconductor-ccplotr |
pcre2posix_test, hb-info, glpsol, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccpromise |
shpc-registry automated BioContainers addition for bioconductor-ccpromise |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ccrepe |
shpc-registry automated BioContainers addition for bioconductor-ccrepe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cctutorial |
shpc-registry automated BioContainers addition for bioconductor-cctutorial |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cdi |
singularity registry hpc automated addition for bioconductor-cdi |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celaref |
shpc-registry automated BioContainers addition for bioconductor-celaref |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celarefdata |
shpc-registry automated BioContainers addition for bioconductor-celarefdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celda |
shpc-registry automated BioContainers addition for bioconductor-celda |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celegans.db |
shpc-registry automated BioContainers addition for bioconductor-celegans.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celeganscdf |
shpc-registry automated BioContainers addition for bioconductor-celeganscdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-celegansprobe |
shpc-registry automated BioContainers addition for bioconductor-celegansprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellarepertorium |
shpc-registry automated BioContainers addition for bioconductor-cellarepertorium |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellbarcode |
shpc-registry automated BioContainers addition for bioconductor-cellbarcode |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellbaser |
shpc-registry automated BioContainers addition for bioconductor-cellbaser |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellbench |
shpc-registry automated BioContainers addition for bioconductor-cellbench |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celldex |
shpc-registry automated BioContainers addition for bioconductor-celldex |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellgrowth |
shpc-registry automated BioContainers addition for bioconductor-cellgrowth |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellhts2 |
shpc-registry automated BioContainers addition for bioconductor-cellhts2 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellid |
shpc-registry automated BioContainers addition for bioconductor-cellid |
geosop, geos-config, glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellity |
shpc-registry automated BioContainers addition for bioconductor-cellity |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellmapper |
shpc-registry automated BioContainers addition for bioconductor-cellmapper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellmapperdata |
shpc-registry automated BioContainers addition for bioconductor-cellmapperdata |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellmigration |
shpc-registry automated BioContainers addition for bioconductor-cellmigration |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellmixs |
shpc-registry automated BioContainers addition for bioconductor-cellmixs |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellnoptr |
shpc-registry automated BioContainers addition for bioconductor-cellnoptr |
diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellscape |
shpc-registry automated BioContainers addition for bioconductor-cellscape |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellscore |
shpc-registry automated BioContainers addition for bioconductor-cellscore |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celltrails |
shpc-registry automated BioContainers addition for bioconductor-celltrails |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-celltree |
shpc-registry automated BioContainers addition for bioconductor-celltree |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cellxgenedp |
singularity registry hpc automated addition for bioconductor-cellxgenedp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cemitool |
shpc-registry automated BioContainers addition for bioconductor-cemitool |
pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-censcyt |
shpc-registry automated BioContainers addition for bioconductor-censcyt |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cepo |
shpc-registry automated BioContainers addition for bioconductor-cepo |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cernanetsim |
shpc-registry automated BioContainers addition for bioconductor-cernanetsim |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cetf |
shpc-registry automated BioContainers addition for bioconductor-cetf |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, jpackage, curve_keygen, cups-config, ippeveprinter, ipptool, glpsol, f2py3.10 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ceu1kg |
shpc-registry automated BioContainers addition for bioconductor-ceu1kg |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ceu1kgv |
shpc-registry automated BioContainers addition for bioconductor-ceu1kgv |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ceuhm3 |
shpc-registry automated BioContainers addition for bioconductor-ceuhm3 |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cexor |
shpc-registry automated BioContainers addition for bioconductor-cexor |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cfassay |
shpc-registry automated BioContainers addition for bioconductor-cfassay |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cfdnakit |
singularity registry hpc automated addition for bioconductor-cfdnakit |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cfdnapro |
shpc-registry automated BioContainers addition for bioconductor-cfdnapro |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cftools |
singularity registry hpc automated addition for bioconductor-cftools |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cftoolsdata |
singularity registry hpc automated addition for bioconductor-cftoolsdata |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cgdv17 |
shpc-registry automated BioContainers addition for bioconductor-cgdv17 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cgen |
shpc-registry automated BioContainers addition for bioconductor-cgen |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cghbase |
shpc-registry automated BioContainers addition for bioconductor-cghbase |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cghcall |
shpc-registry automated BioContainers addition for bioconductor-cghcall |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cghmcr |
shpc-registry automated BioContainers addition for bioconductor-cghmcr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cghnormaliter |
shpc-registry automated BioContainers addition for bioconductor-cghnormaliter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cghregions |
shpc-registry automated BioContainers addition for bioconductor-cghregions |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-champ |
shpc-registry automated BioContainers addition for bioconductor-champ |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-champdata |
shpc-registry automated BioContainers addition for bioconductor-champdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-charge |
shpc-registry automated BioContainers addition for bioconductor-charge |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-charm |
shpc-registry automated BioContainers addition for bioconductor-charm |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-charmdata |
shpc-registry automated BioContainers addition for bioconductor-charmdata |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chemminedrugs |
shpc-registry automated BioContainers addition for bioconductor-chemminedrugs |
rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chemmineob |
singularity registry hpc automated addition for bioconductor-chemmineob |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, obfitall, obmm, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop, obrms, obrotamer, obrotate, obspectrophore, obsym, obtautomer, obthermo, roundtrip, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chemminer |
shpc-registry automated BioContainers addition for bioconductor-chemminer |
rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chetah |
shpc-registry automated BioContainers addition for bioconductor-chetah |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chic.data |
shpc-registry automated BioContainers addition for bioconductor-chic.data |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chic |
shpc-registry automated BioContainers addition for bioconductor-chic |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chicago |
shpc-registry automated BioContainers addition for bioconductor-chicago |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chicken.db |
shpc-registry automated BioContainers addition for bioconductor-chicken.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chicken.db0 |
shpc-registry automated BioContainers addition for bioconductor-chicken.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chickencdf |
shpc-registry automated BioContainers addition for bioconductor-chickencdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chickenprobe |
shpc-registry automated BioContainers addition for bioconductor-chickenprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chihaya |
singularity registry hpc automated addition for bioconductor-chihaya |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chimera |
shpc-registry automated BioContainers addition for bioconductor-chimera |
STAR, STARlong, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chimeraviz |
shpc-registry automated BioContainers addition for bioconductor-chimeraviz |
pandoc-citeproc, pandoc, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chimp.db0 |
shpc-registry automated BioContainers addition for bioconductor-chimp.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chimphumanbraindata |
shpc-registry automated BioContainers addition for bioconductor-chimphumanbraindata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipanalyser |
shpc-registry automated BioContainers addition for bioconductor-chipanalyser |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipcomp |
shpc-registry automated BioContainers addition for bioconductor-chipcomp |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipenrich.data |
shpc-registry automated BioContainers addition for bioconductor-chipenrich.data |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipenrich |
shpc-registry automated BioContainers addition for bioconductor-chipenrich |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipexoqual |
shpc-registry automated BioContainers addition for bioconductor-chipexoqual |
pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipexoqualexample |
shpc-registry automated BioContainers addition for bioconductor-chipexoqualexample |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chippeakanno |
shpc-registry automated BioContainers addition for bioconductor-chippeakanno |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipqc |
shpc-registry automated BioContainers addition for bioconductor-chipqc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipseeker |
shpc-registry automated BioContainers addition for bioconductor-chipseeker |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipseq |
shpc-registry automated BioContainers addition for bioconductor-chipseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipseqdbdata |
shpc-registry automated BioContainers addition for bioconductor-chipseqdbdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipseqr |
shpc-registry automated BioContainers addition for bioconductor-chipseqr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipseqspike |
shpc-registry automated BioContainers addition for bioconductor-chipseqspike |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipsim |
shpc-registry automated BioContainers addition for bioconductor-chipsim |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipxpress |
shpc-registry automated BioContainers addition for bioconductor-chipxpress |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chipxpressdata |
shpc-registry automated BioContainers addition for bioconductor-chipxpressdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chopsticks |
shpc-registry automated BioContainers addition for bioconductor-chopsticks |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chrogps |
shpc-registry automated BioContainers addition for bioconductor-chrogps |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chromdraw |
shpc-registry automated BioContainers addition for bioconductor-chromdraw |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chromheatmap |
shpc-registry automated BioContainers addition for bioconductor-chromheatmap |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chromhmmdata |
shpc-registry automated BioContainers addition for bioconductor-chromhmmdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-chromplot |
shpc-registry automated BioContainers addition for bioconductor-chromplot |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chromscape |
shpc-registry automated BioContainers addition for bioconductor-chromscape |
pandoc-server, glpsol, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chromstar |
shpc-registry automated BioContainers addition for bioconductor-chromstar |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chromstardata |
shpc-registry automated BioContainers addition for bioconductor-chromstardata |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chromswitch |
shpc-registry automated BioContainers addition for bioconductor-chromswitch |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chromvar |
shpc-registry automated BioContainers addition for bioconductor-chromvar |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-chronos |
shpc-registry automated BioContainers addition for bioconductor-chronos |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cicero |
shpc-registry automated BioContainers addition for bioconductor-cicero |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cimice |
shpc-registry automated BioContainers addition for bioconductor-cimice |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cindex |
shpc-registry automated BioContainers addition for bioconductor-cindex |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-circrnaprofiler |
shpc-registry automated BioContainers addition for bioconductor-circrnaprofiler |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-circseqaligntk |
singularity registry hpc automated addition for bioconductor-circseqaligntk |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cispath |
shpc-registry automated BioContainers addition for bioconductor-cispath |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-citefuse |
shpc-registry automated BioContainers addition for bioconductor-citefuse |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-citruscdf |
shpc-registry automated BioContainers addition for bioconductor-citruscdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-citrusprobe |
shpc-registry automated BioContainers addition for bioconductor-citrusprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clariomdhumanprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-clariomdhumanprobeset.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clariomdhumantranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-clariomdhumantranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clariomshumantranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-clariomshumantranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clariomsmousetranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-clariomsmousetranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clariomsrathttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-clariomsrathttranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clariomsrattranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-clariomsrattranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-classifyr |
shpc-registry automated BioContainers addition for bioconductor-classifyr |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cleanupdtseq |
shpc-registry automated BioContainers addition for bioconductor-cleanupdtseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cleaver |
shpc-registry automated BioContainers addition for bioconductor-cleaver |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clevrvis |
singularity registry hpc automated addition for bioconductor-clevrvis |
hb-info, tjbench, glpsol, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-clippda |
shpc-registry automated BioContainers addition for bioconductor-clippda |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clipper |
shpc-registry automated BioContainers addition for bioconductor-clipper |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cliprofiler |
shpc-registry automated BioContainers addition for bioconductor-cliprofiler |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cliquems |
shpc-registry automated BioContainers addition for bioconductor-cliquems |
zipcmp, zipmerge, ziptool, gif2hdf, glpsol, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cll |
shpc-registry automated BioContainers addition for bioconductor-cll |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cllmethylation |
shpc-registry automated BioContainers addition for bioconductor-cllmethylation |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-clomial |
shpc-registry automated BioContainers addition for bioconductor-clomial |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clonality |
shpc-registry automated BioContainers addition for bioconductor-clonality |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clonotyper |
shpc-registry automated BioContainers addition for bioconductor-clonotyper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clst |
shpc-registry automated BioContainers addition for bioconductor-clst |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clstutils |
shpc-registry automated BioContainers addition for bioconductor-clstutils |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clumsid |
shpc-registry automated BioContainers addition for bioconductor-clumsid |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-clumsiddata |
shpc-registry automated BioContainers addition for bioconductor-clumsiddata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-clustcomp |
shpc-registry automated BioContainers addition for bioconductor-clustcomp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clusterexperiment |
shpc-registry automated BioContainers addition for bioconductor-clusterexperiment |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-clusterjudge |
shpc-registry automated BioContainers addition for bioconductor-clusterjudge |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-clusterprofiler |
shpc-registry automated BioContainers addition for bioconductor-clusterprofiler |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clusterseq |
shpc-registry automated BioContainers addition for bioconductor-clusterseq |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-clustersignificance |
shpc-registry automated BioContainers addition for bioconductor-clustersignificance |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clusterstab |
shpc-registry automated BioContainers addition for bioconductor-clusterstab |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clustifyr |
shpc-registry automated BioContainers addition for bioconductor-clustifyr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clustifyrdatahub |
shpc-registry automated BioContainers addition for bioconductor-clustifyrdatahub |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-clustirr |
singularity registry hpc automated addition for bioconductor-clustirr |
pcre2posix_test, hb-info, glpsol, tjbench, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cma |
shpc-registry automated BioContainers addition for bioconductor-cma |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cmap |
shpc-registry automated BioContainers addition for bioconductor-cmap |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cmap2data |
shpc-registry automated BioContainers addition for bioconductor-cmap2data |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cmapr |
shpc-registry automated BioContainers addition for bioconductor-cmapr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cn.farms |
shpc-registry automated BioContainers addition for bioconductor-cn.farms |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cn.mops |
shpc-registry automated BioContainers addition for bioconductor-cn.mops |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnanorm |
shpc-registry automated BioContainers addition for bioconductor-cnanorm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cner |
shpc-registry automated BioContainers addition for bioconductor-cner |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnordt |
shpc-registry automated BioContainers addition for bioconductor-cnordt |
diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnorfeeder |
shpc-registry automated BioContainers addition for bioconductor-cnorfeeder |
diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnorfuzzy |
shpc-registry automated BioContainers addition for bioconductor-cnorfuzzy |
diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnorode |
shpc-registry automated BioContainers addition for bioconductor-cnorode |
diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnpbayes |
shpc-registry automated BioContainers addition for bioconductor-cnpbayes |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cntools |
shpc-registry automated BioContainers addition for bioconductor-cntools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnvfilter |
shpc-registry automated BioContainers addition for bioconductor-cnvfilter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnvgears |
shpc-registry automated BioContainers addition for bioconductor-cnvgears |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnvgsa |
shpc-registry automated BioContainers addition for bioconductor-cnvgsa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnvgsadata |
shpc-registry automated BioContainers addition for bioconductor-cnvgsadata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnviz |
shpc-registry automated BioContainers addition for bioconductor-cnviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnvmetrics |
singularity registry hpc automated addition for bioconductor-cnvmetrics |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnvpanelizer |
shpc-registry automated BioContainers addition for bioconductor-cnvpanelizer |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnvranger |
shpc-registry automated BioContainers addition for bioconductor-cnvranger |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnvrd2 |
shpc-registry automated BioContainers addition for bioconductor-cnvrd2 |
jags |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cnvtools |
shpc-registry automated BioContainers addition for bioconductor-cnvtools |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cobindr |
shpc-registry automated BioContainers addition for bioconductor-cobindr |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cocitestats |
shpc-registry automated BioContainers addition for bioconductor-cocitestats |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cocoa |
shpc-registry automated BioContainers addition for bioconductor-cocoa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-codelink |
shpc-registry automated BioContainers addition for bioconductor-codelink |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-codex |
shpc-registry automated BioContainers addition for bioconductor-codex |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-coexnet |
shpc-registry automated BioContainers addition for bioconductor-coexnet |
pandoc-citeproc, pandoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cogaps |
shpc-registry automated BioContainers addition for bioconductor-cogaps |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cogena |
shpc-registry automated BioContainers addition for bioconductor-cogena |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cogeqc |
singularity registry hpc automated addition for bioconductor-cogeqc |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cogito |
shpc-registry automated BioContainers addition for bioconductor-cogito |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cogps |
shpc-registry automated BioContainers addition for bioconductor-cogps |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cohcap |
shpc-registry automated BioContainers addition for bioconductor-cohcap |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cohcapanno |
shpc-registry automated BioContainers addition for bioconductor-cohcapanno |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cola |
shpc-registry automated BioContainers addition for bioconductor-cola |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-colonca |
shpc-registry automated BioContainers addition for bioconductor-colonca |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-comapr |
singularity registry hpc automated addition for bioconductor-comapr |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-combi |
shpc-registry automated BioContainers addition for bioconductor-combi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-comet |
shpc-registry automated BioContainers addition for bioconductor-comet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-comethdmr |
singularity registry hpc automated addition for bioconductor-comethdmr |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-compartmap |
shpc-registry automated BioContainers addition for bioconductor-compartmap |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-compass |
shpc-registry automated BioContainers addition for bioconductor-compass |
pandoc-server, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-compcoder |
shpc-registry automated BioContainers addition for bioconductor-compcoder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-compepitools |
shpc-registry automated BioContainers addition for bioconductor-compepitools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-compgo |
shpc-registry automated BioContainers addition for bioconductor-compgo |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-complexheatmap |
shpc-registry automated BioContainers addition for bioconductor-complexheatmap |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-compounddb |
singularity registry hpc automated addition for bioconductor-compounddb |
installBiocDataPackage.sh, tomlq, xq, yq, rsvg-convert, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-compran |
shpc-registry automated BioContainers addition for bioconductor-compran |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-conclus |
shpc-registry automated BioContainers addition for bioconductor-conclus |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-concordexr |
singularity registry hpc automated addition for bioconductor-concordexr |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-condcomp |
shpc-registry automated BioContainers addition for bioconductor-condcomp |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-condiments |
shpc-registry automated BioContainers addition for bioconductor-condiments |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-confess |
shpc-registry automated BioContainers addition for bioconductor-confess |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-confessdata |
shpc-registry automated BioContainers addition for bioconductor-confessdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-connectivitymap |
shpc-registry automated BioContainers addition for bioconductor-connectivitymap |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-consensus |
shpc-registry automated BioContainers addition for bioconductor-consensus |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-consensusclusterplus |
shpc-registry automated BioContainers addition for bioconductor-consensusclusterplus |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-consensusde |
shpc-registry automated BioContainers addition for bioconductor-consensusde |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-consensusov |
shpc-registry automated BioContainers addition for bioconductor-consensusov |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-consensusseeker |
shpc-registry automated BioContainers addition for bioconductor-consensusseeker |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-consica |
singularity registry hpc automated addition for bioconductor-consica |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-constand |
shpc-registry automated BioContainers addition for bioconductor-constand |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-contibait |
shpc-registry automated BioContainers addition for bioconductor-contibait |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-conumee |
shpc-registry automated BioContainers addition for bioconductor-conumee |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-convert |
shpc-registry automated BioContainers addition for bioconductor-convert |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-copa |
shpc-registry automated BioContainers addition for bioconductor-copa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-copdsexualdimorphism.data |
shpc-registry automated BioContainers addition for bioconductor-copdsexualdimorphism.data |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-copyhelper |
shpc-registry automated BioContainers addition for bioconductor-copyhelper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-copyneutralima |
shpc-registry automated BioContainers addition for bioconductor-copyneutralima |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-copynumber |
shpc-registry automated BioContainers addition for bioconductor-copynumber |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-copynumberplots |
shpc-registry automated BioContainers addition for bioconductor-copynumberplots |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-copywriter |
shpc-registry automated BioContainers addition for bioconductor-copywriter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cordon |
shpc-registry automated BioContainers addition for bioconductor-cordon |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-coregflux |
shpc-registry automated BioContainers addition for bioconductor-coregflux |
glpsol, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-coregnet |
shpc-registry automated BioContainers addition for bioconductor-coregnet |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-coregx |
shpc-registry automated BioContainers addition for bioconductor-coregx |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cormotif |
shpc-registry automated BioContainers addition for bioconductor-cormotif |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cormut |
shpc-registry automated BioContainers addition for bioconductor-cormut |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-corral |
shpc-registry automated BioContainers addition for bioconductor-corral |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-correp |
shpc-registry automated BioContainers addition for bioconductor-correp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-coseq |
shpc-registry automated BioContainers addition for bioconductor-coseq |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cosia |
singularity registry hpc automated addition for bioconductor-cosia |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cosiadata |
singularity registry hpc automated addition for bioconductor-cosiadata |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cosmic.67 |
shpc-registry automated BioContainers addition for bioconductor-cosmic.67 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cosmiq |
shpc-registry automated BioContainers addition for bioconductor-cosmiq |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cosmosr |
shpc-registry automated BioContainers addition for bioconductor-cosmosr |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cosnet |
shpc-registry automated BioContainers addition for bioconductor-cosnet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cotan |
singularity registry hpc automated addition for bioconductor-cotan |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cottoncdf |
shpc-registry automated BioContainers addition for bioconductor-cottoncdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cottonprobe |
shpc-registry automated BioContainers addition for bioconductor-cottonprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-countclust |
shpc-registry automated BioContainers addition for bioconductor-countclust |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-countsimqc |
shpc-registry automated BioContainers addition for bioconductor-countsimqc |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-coveb |
shpc-registry automated BioContainers addition for bioconductor-coveb |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-coverageview |
shpc-registry automated BioContainers addition for bioconductor-coverageview |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-covrna |
shpc-registry automated BioContainers addition for bioconductor-covrna |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cpvsnp |
shpc-registry automated BioContainers addition for bioconductor-cpvsnp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cqn |
shpc-registry automated BioContainers addition for bioconductor-cqn |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-crcl18 |
shpc-registry automated BioContainers addition for bioconductor-crcl18 |
x86_64-conda-linux-gnu-gfortran.bin, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crimage |
shpc-registry automated BioContainers addition for bioconductor-crimage |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprbase |
singularity registry hpc automated addition for bioconductor-crisprbase |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprbowtie |
singularity registry hpc automated addition for bioconductor-crisprbowtie |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprbwa |
singularity registry hpc automated addition for bioconductor-crisprbwa |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprdesign |
singularity registry hpc automated addition for bioconductor-crisprdesign |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprscore |
singularity registry hpc automated addition for bioconductor-crisprscore |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprscoredata |
singularity registry hpc automated addition for bioconductor-crisprscoredata |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprseek |
shpc-registry automated BioContainers addition for bioconductor-crisprseek |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprseekplus |
shpc-registry automated BioContainers addition for bioconductor-crisprseekplus |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprvariants |
shpc-registry automated BioContainers addition for bioconductor-crisprvariants |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprverse |
singularity registry hpc automated addition for bioconductor-crisprverse |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crisprviz |
singularity registry hpc automated addition for bioconductor-crisprviz |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crlmm |
shpc-registry automated BioContainers addition for bioconductor-crlmm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-crossicc |
shpc-registry automated BioContainers addition for bioconductor-crossicc |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-crossmeta |
shpc-registry automated BioContainers addition for bioconductor-crossmeta |
xgboost, pandoc-citeproc, pandoc, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-csar |
shpc-registry automated BioContainers addition for bioconductor-csar |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-csaw |
shpc-registry automated BioContainers addition for bioconductor-csaw |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-csdr |
shpc-registry automated BioContainers addition for bioconductor-csdr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cssp |
shpc-registry automated BioContainers addition for bioconductor-cssp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cssq |
shpc-registry automated BioContainers addition for bioconductor-cssq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ctc |
shpc-registry automated BioContainers addition for bioconductor-ctc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ctcf |
shpc-registry automated BioContainers addition for bioconductor-ctcf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ctdata |
singularity registry hpc automated addition for bioconductor-ctdata |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ctdquerier |
shpc-registry automated BioContainers addition for bioconductor-ctdquerier |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ctggem |
shpc-registry automated BioContainers addition for bioconductor-ctggem |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ctrap |
shpc-registry automated BioContainers addition for bioconductor-ctrap |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ctsge |
shpc-registry automated BioContainers addition for bioconductor-ctsge |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ctsv |
singularity registry hpc automated addition for bioconductor-ctsv |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cummerbund |
shpc-registry automated BioContainers addition for bioconductor-cummerbund |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-curatedadipoarray |
shpc-registry automated BioContainers addition for bioconductor-curatedadipoarray |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-curatedadipochip |
shpc-registry automated BioContainers addition for bioconductor-curatedadipochip |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-curatedadiporna |
shpc-registry automated BioContainers addition for bioconductor-curatedadiporna |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-curatedatlasqueryr |
singularity registry hpc automated addition for bioconductor-curatedatlasqueryr |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-curatedbladderdata |
shpc-registry automated BioContainers addition for bioconductor-curatedbladderdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-curatedbreastdata |
shpc-registry automated BioContainers addition for bioconductor-curatedbreastdata |
pandoc-server, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-curatedcrcdata |
shpc-registry automated BioContainers addition for bioconductor-curatedcrcdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-curatedmetagenomicdata |
shpc-registry automated BioContainers addition for bioconductor-curatedmetagenomicdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-curatedovariandata |
shpc-registry automated BioContainers addition for bioconductor-curatedovariandata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-curatedtbdata |
shpc-registry automated BioContainers addition for bioconductor-curatedtbdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-curatedtcgadata |
shpc-registry automated BioContainers addition for bioconductor-curatedtcgadata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-customcmpdb |
shpc-registry automated BioContainers addition for bioconductor-customcmpdb |
rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders |
|
GITHUB
|
quay.io/biocontainers/bioconductor-customprodb |
shpc-registry automated BioContainers addition for bioconductor-customprodb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cve |
shpc-registry automated BioContainers addition for bioconductor-cve |
pandoc-citeproc, pandoc, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cyanofilter |
shpc-registry automated BioContainers addition for bioconductor-cyanofilter |
geosop, geos-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cycle |
shpc-registry automated BioContainers addition for bioconductor-cycle |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cydar |
shpc-registry automated BioContainers addition for bioconductor-cydar |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cyp450cdf |
shpc-registry automated BioContainers addition for bioconductor-cyp450cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytodx |
shpc-registry automated BioContainers addition for bioconductor-cytodx |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytofast |
shpc-registry automated BioContainers addition for bioconductor-cytofast |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytofpower |
shpc-registry automated BioContainers addition for bioconductor-cytofpower |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytofqc |
singularity registry hpc automated addition for bioconductor-cytofqc |
f2py3.11, hb-info, tjbench, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytoglmm |
shpc-registry automated BioContainers addition for bioconductor-cytoglmm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytokernel |
shpc-registry automated BioContainers addition for bioconductor-cytokernel |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytolib |
shpc-registry automated BioContainers addition for bioconductor-cytolib |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytomapper |
shpc-registry automated BioContainers addition for bioconductor-cytomapper |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytomem |
singularity registry hpc automated addition for bioconductor-cytomem |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytoml |
shpc-registry automated BioContainers addition for bioconductor-cytoml |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytopipeline |
singularity registry hpc automated addition for bioconductor-cytopipeline |
hb-info, tjbench, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytopipelinegui |
singularity registry hpc automated addition for bioconductor-cytopipelinegui |
pcre2posix_test, hb-info, tjbench, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytotree |
shpc-registry automated BioContainers addition for bioconductor-cytotree |
pandoc, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-cytoviewer |
singularity registry hpc automated addition for bioconductor-cytoviewer |
elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, protoc-23.3.0, run_x_platform_fuzz_corpus, sozip, elasticurl, elasticurl_cpp, elastipubsub, pg_amcheck, h5delete, bsdcat, bsdcpio, bsdtar, pdfsig, gdal_create, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, sha256_profile, pg_verifybackup, pdfattach, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dada2 |
shpc-registry automated BioContainers addition for bioconductor-dada2 |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-daglogo |
shpc-registry automated BioContainers addition for bioconductor-daglogo |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dama |
shpc-registry automated BioContainers addition for bioconductor-dama |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-damefinder |
shpc-registry automated BioContainers addition for bioconductor-damefinder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-damirseq |
shpc-registry automated BioContainers addition for bioconductor-damirseq |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dapar |
shpc-registry automated BioContainers addition for bioconductor-dapar |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dapardata |
shpc-registry automated BioContainers addition for bioconductor-dapardata |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dart |
shpc-registry automated BioContainers addition for bioconductor-dart |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dasper |
shpc-registry automated BioContainers addition for bioconductor-dasper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-davidtiling |
shpc-registry automated BioContainers addition for bioconductor-davidtiling |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dbchip |
shpc-registry automated BioContainers addition for bioconductor-dbchip |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dcanr |
shpc-registry automated BioContainers addition for bioconductor-dcanr |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dcats |
singularity registry hpc automated addition for bioconductor-dcats |
pcre2posix_test, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dce |
shpc-registry automated BioContainers addition for bioconductor-dce |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dcgsa |
shpc-registry automated BioContainers addition for bioconductor-dcgsa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dchiprep |
shpc-registry automated BioContainers addition for bioconductor-dchiprep |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ddct |
shpc-registry automated BioContainers addition for bioconductor-ddct |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ddpcrclust |
shpc-registry automated BioContainers addition for bioconductor-ddpcrclust |
geos-config, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dearseq |
shpc-registry automated BioContainers addition for bioconductor-dearseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-debcam |
shpc-registry automated BioContainers addition for bioconductor-debcam |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-debrowser |
shpc-registry automated BioContainers addition for bioconductor-debrowser |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-decipher |
shpc-registry automated BioContainers addition for bioconductor-decipher |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-deco |
shpc-registry automated BioContainers addition for bioconductor-deco |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-decomplexdisease |
shpc-registry automated BioContainers addition for bioconductor-decomplexdisease |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-decomptumor2sig |
shpc-registry automated BioContainers addition for bioconductor-decomptumor2sig |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-deconrnaseq |
shpc-registry automated BioContainers addition for bioconductor-deconrnaseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-decontam |
shpc-registry automated BioContainers addition for bioconductor-decontam |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-decontx |
singularity registry hpc automated addition for bioconductor-decontx |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-deconvr |
shpc-registry automated BioContainers addition for bioconductor-deconvr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-decoupler |
shpc-registry automated BioContainers addition for bioconductor-decoupler |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-deds |
shpc-registry automated BioContainers addition for bioconductor-deds |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-deepbluer |
shpc-registry automated BioContainers addition for bioconductor-deepbluer |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-deeppincs |
shpc-registry automated BioContainers addition for bioconductor-deeppincs |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-deepsnv |
shpc-registry automated BioContainers addition for bioconductor-deepsnv |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-deformats |
shpc-registry automated BioContainers addition for bioconductor-deformats |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-degnorm |
shpc-registry automated BioContainers addition for bioconductor-degnorm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-degraph |
shpc-registry automated BioContainers addition for bioconductor-degraph |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage |
|
GITHUB
|
quay.io/biocontainers/bioconductor-degreport |
shpc-registry automated BioContainers addition for bioconductor-degreport |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-degseq |
shpc-registry automated BioContainers addition for bioconductor-degseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-delayedarray |
shpc-registry automated BioContainers addition for bioconductor-delayedarray |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-delayeddataframe |
shpc-registry automated BioContainers addition for bioconductor-delayeddataframe |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-delayedmatrixstats |
shpc-registry automated BioContainers addition for bioconductor-delayedmatrixstats |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-delayedrandomarray |
shpc-registry automated BioContainers addition for bioconductor-delayedrandomarray |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-delayedtensor |
shpc-registry automated BioContainers addition for bioconductor-delayedtensor |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-delocal |
singularity registry hpc automated addition for bioconductor-delocal |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-deltacapturec |
shpc-registry automated BioContainers addition for bioconductor-deltacapturec |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-deltagseg |
shpc-registry automated BioContainers addition for bioconductor-deltagseg |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-demand |
shpc-registry automated BioContainers addition for bioconductor-demand |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-demixt |
shpc-registry automated BioContainers addition for bioconductor-demixt |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-demuxmix |
singularity registry hpc automated addition for bioconductor-demuxmix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-demuxsnp |
singularity registry hpc automated addition for bioconductor-demuxsnp |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-densvis |
shpc-registry automated BioContainers addition for bioconductor-densvis |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dep |
shpc-registry automated BioContainers addition for bioconductor-dep |
pandoc-citeproc, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-depecher |
shpc-registry automated BioContainers addition for bioconductor-depecher |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-depinfer |
singularity registry hpc automated addition for bioconductor-depinfer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-depmap |
shpc-registry automated BioContainers addition for bioconductor-depmap |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-deqms |
shpc-registry automated BioContainers addition for bioconductor-deqms |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-derfinder |
shpc-registry automated BioContainers addition for bioconductor-derfinder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-derfinderdata |
shpc-registry automated BioContainers addition for bioconductor-derfinderdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-derfinderhelper |
shpc-registry automated BioContainers addition for bioconductor-derfinderhelper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-derfinderplot |
shpc-registry automated BioContainers addition for bioconductor-derfinderplot |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-descan2 |
shpc-registry automated BioContainers addition for bioconductor-descan2 |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-deseq |
shpc-registry automated BioContainers addition for bioconductor-deseq |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-deseq2 |
shpc-registry automated BioContainers addition for bioconductor-deseq2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-desingle |
shpc-registry automated BioContainers addition for bioconductor-desingle |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-desousa2013 |
shpc-registry automated BioContainers addition for bioconductor-desousa2013 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-despace |
singularity registry hpc automated addition for bioconductor-despace |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, hb-info, f2py3.11, dvipdf, eps2eps, gs, gsbj |
|
GITHUB
|
quay.io/biocontainers/bioconductor-destiny |
shpc-registry automated BioContainers addition for bioconductor-destiny |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-desubs |
shpc-registry automated BioContainers addition for bioconductor-desubs |
idn2, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dewseq |
shpc-registry automated BioContainers addition for bioconductor-dewseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dexma |
shpc-registry automated BioContainers addition for bioconductor-dexma |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dexmadata |
shpc-registry automated BioContainers addition for bioconductor-dexmadata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dexseq |
shpc-registry automated BioContainers addition for bioconductor-dexseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dexus |
shpc-registry automated BioContainers addition for bioconductor-dexus |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dfp |
shpc-registry automated BioContainers addition for bioconductor-dfp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dialignr |
shpc-registry automated BioContainers addition for bioconductor-dialignr |
zipcmp, zipmerge, ziptool, gif2hdf, glpsol, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-diffbind |
shpc-registry automated BioContainers addition for bioconductor-diffbind |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-diffcoexp |
shpc-registry automated BioContainers addition for bioconductor-diffcoexp |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-diffcyt |
shpc-registry automated BioContainers addition for bioconductor-diffcyt |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-differentialregulation |
singularity registry hpc automated addition for bioconductor-differentialregulation |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-diffgeneanalysis |
shpc-registry automated BioContainers addition for bioconductor-diffgeneanalysis |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-diffhic |
shpc-registry automated BioContainers addition for bioconductor-diffhic |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-difflogo |
shpc-registry automated BioContainers addition for bioconductor-difflogo |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-diffloop |
shpc-registry automated BioContainers addition for bioconductor-diffloop |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-diffloopdata |
shpc-registry automated BioContainers addition for bioconductor-diffloopdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-diffustats |
shpc-registry automated BioContainers addition for bioconductor-diffustats |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-diffutr |
shpc-registry automated BioContainers addition for bioconductor-diffutr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-diggit |
shpc-registry automated BioContainers addition for bioconductor-diggit |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-diggitdata |
shpc-registry automated BioContainers addition for bioconductor-diggitdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dino |
shpc-registry automated BioContainers addition for bioconductor-dino |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dir.expiry |
shpc-registry automated BioContainers addition for bioconductor-dir.expiry |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-director |
shpc-registry automated BioContainers addition for bioconductor-director |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dirichletmultinomial |
shpc-registry automated BioContainers addition for bioconductor-dirichletmultinomial |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-discordant |
shpc-registry automated BioContainers addition for bioconductor-discordant |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-discorhythm |
shpc-registry automated BioContainers addition for bioconductor-discorhythm |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-distinct |
shpc-registry automated BioContainers addition for bioconductor-distinct |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dittoseq |
shpc-registry automated BioContainers addition for bioconductor-dittoseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-divergence |
shpc-registry automated BioContainers addition for bioconductor-divergence |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dks |
shpc-registry automated BioContainers addition for bioconductor-dks |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dlbcl |
shpc-registry automated BioContainers addition for bioconductor-dlbcl |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dmcfb |
shpc-registry automated BioContainers addition for bioconductor-dmcfb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dmchmm |
shpc-registry automated BioContainers addition for bioconductor-dmchmm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dmelsgi |
shpc-registry automated BioContainers addition for bioconductor-dmelsgi |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dmrcaller |
shpc-registry automated BioContainers addition for bioconductor-dmrcaller |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dmrcate |
shpc-registry automated BioContainers addition for bioconductor-dmrcate |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dmrcatedata |
shpc-registry automated BioContainers addition for bioconductor-dmrcatedata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dmrforpairs |
shpc-registry automated BioContainers addition for bioconductor-dmrforpairs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dmrscan |
shpc-registry automated BioContainers addition for bioconductor-dmrscan |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dmrseq |
shpc-registry automated BioContainers addition for bioconductor-dmrseq |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dnabarcodecompatibility |
shpc-registry automated BioContainers addition for bioconductor-dnabarcodecompatibility |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dnabarcodes |
shpc-registry automated BioContainers addition for bioconductor-dnabarcodes |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dnacopy |
shpc-registry automated BioContainers addition for bioconductor-dnacopy |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dnafusion |
singularity registry hpc automated addition for bioconductor-dnafusion |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dnashaper |
shpc-registry automated BioContainers addition for bioconductor-dnashaper |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dnazoodata |
singularity registry hpc automated addition for bioconductor-dnazoodata |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-do.db |
shpc-registry automated BioContainers addition for bioconductor-do.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dominoeffect |
shpc-registry automated BioContainers addition for bioconductor-dominoeffect |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-donapllp2013 |
shpc-registry automated BioContainers addition for bioconductor-donapllp2013 |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-doppelgangr |
shpc-registry automated BioContainers addition for bioconductor-doppelgangr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-doqtl |
shpc-registry automated BioContainers addition for bioconductor-doqtl |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dorothea |
shpc-registry automated BioContainers addition for bioconductor-dorothea |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-doscheda |
shpc-registry automated BioContainers addition for bioconductor-doscheda |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dose |
shpc-registry automated BioContainers addition for bioconductor-dose |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-doser |
shpc-registry automated BioContainers addition for bioconductor-doser |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-doubletrouble |
singularity registry hpc automated addition for bioconductor-doubletrouble |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dpeak |
shpc-registry automated BioContainers addition for bioconductor-dpeak |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-drawproteins |
shpc-registry automated BioContainers addition for bioconductor-drawproteins |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dream4 |
shpc-registry automated BioContainers addition for bioconductor-dream4 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dresscheck |
shpc-registry automated BioContainers addition for bioconductor-dresscheck |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-drimseq |
shpc-registry automated BioContainers addition for bioconductor-drimseq |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-drivernet |
shpc-registry automated BioContainers addition for bioconductor-drivernet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-droplettestfiles |
shpc-registry automated BioContainers addition for bioconductor-droplettestfiles |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dropletutils |
shpc-registry automated BioContainers addition for bioconductor-dropletutils |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-drosgenome1.db |
shpc-registry automated BioContainers addition for bioconductor-drosgenome1.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-drosgenome1cdf |
shpc-registry automated BioContainers addition for bioconductor-drosgenome1cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-drosgenome1probe |
shpc-registry automated BioContainers addition for bioconductor-drosgenome1probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-drosophila2.db |
shpc-registry automated BioContainers addition for bioconductor-drosophila2.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-drosophila2cdf |
shpc-registry automated BioContainers addition for bioconductor-drosophila2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-drosophila2probe |
shpc-registry automated BioContainers addition for bioconductor-drosophila2probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-drugtargetinteractions |
shpc-registry automated BioContainers addition for bioconductor-drugtargetinteractions |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-drugvsdisease |
shpc-registry automated BioContainers addition for bioconductor-drugvsdisease |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-drugvsdiseasedata |
shpc-registry automated BioContainers addition for bioconductor-drugvsdiseasedata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dsimer |
shpc-registry automated BioContainers addition for bioconductor-dsimer |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dsqtl |
shpc-registry automated BioContainers addition for bioconductor-dsqtl |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dss |
shpc-registry automated BioContainers addition for bioconductor-dss |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dstruct |
shpc-registry automated BioContainers addition for bioconductor-dstruct |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dta |
shpc-registry automated BioContainers addition for bioconductor-dta |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dualks |
shpc-registry automated BioContainers addition for bioconductor-dualks |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dune |
shpc-registry automated BioContainers addition for bioconductor-dune |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-duoclustering2018 |
shpc-registry automated BioContainers addition for bioconductor-duoclustering2018 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dupchecker |
shpc-registry automated BioContainers addition for bioconductor-dupchecker |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dupradar |
shpc-registry automated BioContainers addition for bioconductor-dupradar |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-dvddata |
shpc-registry automated BioContainers addition for bioconductor-dvddata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dyebias |
shpc-registry automated BioContainers addition for bioconductor-dyebias |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dyebiasexamples |
shpc-registry automated BioContainers addition for bioconductor-dyebiasexamples |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-dyndoc |
shpc-registry automated BioContainers addition for bioconductor-dyndoc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-easier |
shpc-registry automated BioContainers addition for bioconductor-easier |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-easierdata |
shpc-registry automated BioContainers addition for bioconductor-easierdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-easycelltype |
singularity registry hpc automated addition for bioconductor-easycelltype |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-easylift |
singularity registry hpc automated addition for bioconductor-easylift |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-easyqpcr |
shpc-registry automated BioContainers addition for bioconductor-easyqpcr |
gtk-builder-convert, gtk-demo, gtk-query-immodules-2.0, gtk-update-icon-cache, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-easyreporting |
shpc-registry automated BioContainers addition for bioconductor-easyreporting |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-easyrnaseq |
shpc-registry automated BioContainers addition for bioconductor-easyrnaseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-eatonetalchipseq |
shpc-registry automated BioContainers addition for bioconductor-eatonetalchipseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ebarrays |
shpc-registry automated BioContainers addition for bioconductor-ebarrays |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ebcoexpress |
shpc-registry automated BioContainers addition for bioconductor-ebcoexpress |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ebimage |
shpc-registry automated BioContainers addition for bioconductor-ebimage |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ebsea |
shpc-registry automated BioContainers addition for bioconductor-ebsea |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ebseq |
shpc-registry automated BioContainers addition for bioconductor-ebseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ebseqhmm |
shpc-registry automated BioContainers addition for bioconductor-ebseqhmm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ecoli2.db |
shpc-registry automated BioContainers addition for bioconductor-ecoli2.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ecoli2cdf |
shpc-registry automated BioContainers addition for bioconductor-ecoli2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ecoli2probe |
shpc-registry automated BioContainers addition for bioconductor-ecoli2probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ecoliasv2cdf |
shpc-registry automated BioContainers addition for bioconductor-ecoliasv2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ecoliasv2probe |
shpc-registry automated BioContainers addition for bioconductor-ecoliasv2probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ecolicdf |
shpc-registry automated BioContainers addition for bioconductor-ecolicdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ecolik12.db0 |
shpc-registry automated BioContainers addition for bioconductor-ecolik12.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ecolileucine |
shpc-registry automated BioContainers addition for bioconductor-ecolileucine |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ecoliprobe |
shpc-registry automated BioContainers addition for bioconductor-ecoliprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ecolisakai.db0 |
shpc-registry automated BioContainers addition for bioconductor-ecolisakai.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ecolitk |
shpc-registry automated BioContainers addition for bioconductor-ecolitk |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-edaseq |
shpc-registry automated BioContainers addition for bioconductor-edaseq |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-edda |
shpc-registry automated BioContainers addition for bioconductor-edda |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-edge |
shpc-registry automated BioContainers addition for bioconductor-edge |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-edger |
shpc-registry automated BioContainers addition for bioconductor-edger |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-edirquery |
singularity registry hpc automated addition for bioconductor-edirquery |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-eds |
singularity registry hpc automated addition for bioconductor-eds |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-eegc |
shpc-registry automated BioContainers addition for bioconductor-eegc |
udunits2, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-egad |
shpc-registry automated BioContainers addition for bioconductor-egad |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-egsea |
shpc-registry automated BioContainers addition for bioconductor-egsea |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-egseadata |
shpc-registry automated BioContainers addition for bioconductor-egseadata |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-eir |
shpc-registry automated BioContainers addition for bioconductor-eir |
rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders |
|
GITHUB
|
quay.io/biocontainers/bioconductor-eisa |
shpc-registry automated BioContainers addition for bioconductor-eisa |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-eisar |
shpc-registry automated BioContainers addition for bioconductor-eisar |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-elbow |
shpc-registry automated BioContainers addition for bioconductor-elbow |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-elmer.data |
shpc-registry automated BioContainers addition for bioconductor-elmer.data |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-elmer |
shpc-registry automated BioContainers addition for bioconductor-elmer |
pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-emdomics |
shpc-registry automated BioContainers addition for bioconductor-emdomics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-empiricalbrownsmethod |
shpc-registry automated BioContainers addition for bioconductor-empiricalbrownsmethod |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-emtdata |
shpc-registry automated BioContainers addition for bioconductor-emtdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-encodexplorer |
shpc-registry automated BioContainers addition for bioconductor-encodexplorer |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-encodexplorerdata |
shpc-registry automated BioContainers addition for bioconductor-encodexplorerdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-enhancedvolcano |
shpc-registry automated BioContainers addition for bioconductor-enhancedvolcano |
projsync, invgeod, invproj, projinfo, cct, gie, cs2cs, geod, proj, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-enhancerhomologsearch |
shpc-registry automated BioContainers addition for bioconductor-enhancerhomologsearch |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-enmcb |
shpc-registry automated BioContainers addition for bioconductor-enmcb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-enmix |
shpc-registry automated BioContainers addition for bioconductor-enmix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-enrichedheatmap |
shpc-registry automated BioContainers addition for bioconductor-enrichedheatmap |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-enrichmentbrowser |
shpc-registry automated BioContainers addition for bioconductor-enrichmentbrowser |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-enrichplot |
shpc-registry automated BioContainers addition for bioconductor-enrichplot |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-enrichtf |
shpc-registry automated BioContainers addition for bioconductor-enrichtf |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-enrichviewnet |
singularity registry hpc automated addition for bioconductor-enrichviewnet |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, curve_keygen, jpackage, hb-info, cups-config, ippeveprinter, ipptool, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ensdb.hsapiens.v75 |
shpc-registry automated BioContainers addition for bioconductor-ensdb.hsapiens.v75 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ensdb.hsapiens.v79 |
shpc-registry automated BioContainers addition for bioconductor-ensdb.hsapiens.v79 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ensdb.hsapiens.v86 |
shpc-registry automated BioContainers addition for bioconductor-ensdb.hsapiens.v86 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ensdb.mmusculus.v75 |
shpc-registry automated BioContainers addition for bioconductor-ensdb.mmusculus.v75 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ensdb.mmusculus.v79 |
shpc-registry automated BioContainers addition for bioconductor-ensdb.mmusculus.v79 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ensdb.rnorvegicus.v75 |
shpc-registry automated BioContainers addition for bioconductor-ensdb.rnorvegicus.v75 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ensdb.rnorvegicus.v79 |
shpc-registry automated BioContainers addition for bioconductor-ensdb.rnorvegicus.v79 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ensembldb |
shpc-registry automated BioContainers addition for bioconductor-ensembldb |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ensemblvep |
shpc-registry automated BioContainers addition for bioconductor-ensemblvep |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-envisionquery |
shpc-registry automated BioContainers addition for bioconductor-envisionquery |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epialleler |
shpc-registry automated BioContainers addition for bioconductor-epialleler |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-epicompare |
singularity registry hpc automated addition for bioconductor-epicompare |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, pandoc, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epidecoder |
shpc-registry automated BioContainers addition for bioconductor-epidecoder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-epidish |
shpc-registry automated BioContainers addition for bioconductor-epidish |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epigenomix |
shpc-registry automated BioContainers addition for bioconductor-epigenomix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-epigrahmm |
shpc-registry automated BioContainers addition for bioconductor-epigrahmm |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epihet |
shpc-registry automated BioContainers addition for bioconductor-epihet |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epimix.data |
singularity registry hpc automated addition for bioconductor-epimix.data |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epimutacionsdata |
singularity registry hpc automated addition for bioconductor-epimutacionsdata |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epinem |
shpc-registry automated BioContainers addition for bioconductor-epinem |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-epistack |
shpc-registry automated BioContainers addition for bioconductor-epistack |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-epistasisga |
singularity registry hpc automated addition for bioconductor-epistasisga |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epitxdb.hs.hg38 |
shpc-registry automated BioContainers addition for bioconductor-epitxdb.hs.hg38 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-epitxdb |
shpc-registry automated BioContainers addition for bioconductor-epitxdb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-epitxdb.mm.mm10 |
shpc-registry automated BioContainers addition for bioconductor-epitxdb.mm.mm10 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-epitxdb.sc.saccer3 |
shpc-registry automated BioContainers addition for bioconductor-epitxdb.sc.saccer3 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-epivizr |
shpc-registry automated BioContainers addition for bioconductor-epivizr |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epivizrchart |
shpc-registry automated BioContainers addition for bioconductor-epivizrchart |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epivizrdata |
shpc-registry automated BioContainers addition for bioconductor-epivizrdata |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epivizrserver |
shpc-registry automated BioContainers addition for bioconductor-epivizrserver |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-epivizrstandalone |
shpc-registry automated BioContainers addition for bioconductor-epivizrstandalone |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-erccdashboard |
shpc-registry automated BioContainers addition for bioconductor-erccdashboard |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-erma |
shpc-registry automated BioContainers addition for bioconductor-erma |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-erssa |
shpc-registry automated BioContainers addition for bioconductor-erssa |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-esatac |
shpc-registry automated BioContainers addition for bioconductor-esatac |
pandoc-citeproc, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj |
|
GITHUB
|
quay.io/biocontainers/bioconductor-escape |
shpc-registry automated BioContainers addition for bioconductor-escape |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-escher |
singularity registry hpc automated addition for bioconductor-escher |
git2, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, hb-info, dvipdf, eps2eps, gs, gsbj, gsdj |
|
GITHUB
|
quay.io/biocontainers/bioconductor-esetvis |
shpc-registry automated BioContainers addition for bioconductor-esetvis |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-estrogen |
shpc-registry automated BioContainers addition for bioconductor-estrogen |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-etec16s |
shpc-registry automated BioContainers addition for bioconductor-etec16s |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-eudysbiome |
shpc-registry automated BioContainers addition for bioconductor-eudysbiome |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-eupathdb |
shpc-registry automated BioContainers addition for bioconductor-eupathdb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-evaluomer |
shpc-registry automated BioContainers addition for bioconductor-evaluomer |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-eventpointer |
shpc-registry automated BioContainers addition for bioconductor-eventpointer |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ewce |
shpc-registry automated BioContainers addition for bioconductor-ewce |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ewcedata |
shpc-registry automated BioContainers addition for bioconductor-ewcedata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-excluderanges |
shpc-registry automated BioContainers addition for bioconductor-excluderanges |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-excluster |
shpc-registry automated BioContainers addition for bioconductor-excluster |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-eximir |
shpc-registry automated BioContainers addition for bioconductor-eximir |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-exomecopy |
shpc-registry automated BioContainers addition for bioconductor-exomecopy |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-exomepeak |
shpc-registry automated BioContainers addition for bioconductor-exomepeak |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-exomepeak2 |
shpc-registry automated BioContainers addition for bioconductor-exomepeak2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-experimenthub |
shpc-registry automated BioContainers addition for bioconductor-experimenthub |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-experimenthubdata |
shpc-registry automated BioContainers addition for bioconductor-experimenthubdata |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-experimentsubset |
shpc-registry automated BioContainers addition for bioconductor-experimentsubset |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-explorase |
shpc-registry automated BioContainers addition for bioconductor-explorase |
ggobi, gtk-builder-convert, gtk-demo, gtk-query-immodules-2.0, gtk-update-icon-cache, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-exploremodelmatrix |
shpc-registry automated BioContainers addition for bioconductor-exploremodelmatrix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-expressionatlas |
shpc-registry automated BioContainers addition for bioconductor-expressionatlas |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-expressionnormalizationworkflow |
shpc-registry automated BioContainers addition for bioconductor-expressionnormalizationworkflow |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-expressionview |
shpc-registry automated BioContainers addition for bioconductor-expressionview |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-extrachips |
singularity registry hpc automated addition for bioconductor-extrachips |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-faahko |
shpc-registry automated BioContainers addition for bioconductor-faahko |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fabia |
shpc-registry automated BioContainers addition for bioconductor-fabia |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fabiadata |
shpc-registry automated BioContainers addition for bioconductor-fabiadata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-facopy.annot |
shpc-registry automated BioContainers addition for bioconductor-facopy.annot |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-facsdorit |
shpc-registry automated BioContainers addition for bioconductor-facsdorit |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-factdesign |
shpc-registry automated BioContainers addition for bioconductor-factdesign |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-factr |
singularity registry hpc automated addition for bioconductor-factr |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-famagg |
shpc-registry automated BioContainers addition for bioconductor-famagg |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-famat |
shpc-registry automated BioContainers addition for bioconductor-famat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fantom3and4cage |
shpc-registry automated BioContainers addition for bioconductor-fantom3and4cage |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-farms |
shpc-registry automated BioContainers addition for bioconductor-farms |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fastliquidassociation |
shpc-registry automated BioContainers addition for bioconductor-fastliquidassociation |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fastqcleaner |
shpc-registry automated BioContainers addition for bioconductor-fastqcleaner |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fastreer |
singularity registry hpc automated addition for bioconductor-fastreer |
jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap, jps |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fastseg |
shpc-registry automated BioContainers addition for bioconductor-fastseg |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fcbf |
shpc-registry automated BioContainers addition for bioconductor-fcbf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fccac |
shpc-registry automated BioContainers addition for bioconductor-fccac |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fci |
shpc-registry automated BioContainers addition for bioconductor-fci |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fcoex |
shpc-registry automated BioContainers addition for bioconductor-fcoex |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fcscan |
shpc-registry automated BioContainers addition for bioconductor-fcscan |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fdb.fantom4.promoters.hg19 |
shpc-registry automated BioContainers addition for bioconductor-fdb.fantom4.promoters.hg19 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fdb.infiniummethylation.hg18 |
shpc-registry automated BioContainers addition for bioconductor-fdb.infiniummethylation.hg18 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fdb.infiniummethylation.hg19 |
shpc-registry automated BioContainers addition for bioconductor-fdb.infiniummethylation.hg19 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fdb.ucsc.snp135common.hg19 |
shpc-registry automated BioContainers addition for bioconductor-fdb.ucsc.snp135common.hg19 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fdb.ucsc.snp137common.hg19 |
shpc-registry automated BioContainers addition for bioconductor-fdb.ucsc.snp137common.hg19 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fdb.ucsc.trnas |
shpc-registry automated BioContainers addition for bioconductor-fdb.ucsc.trnas |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fdrame |
shpc-registry automated BioContainers addition for bioconductor-fdrame |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-feast |
shpc-registry automated BioContainers addition for bioconductor-feast |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-featseekr |
singularity registry hpc automated addition for bioconductor-featseekr |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fedup |
shpc-registry automated BioContainers addition for bioconductor-fedup |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fella |
shpc-registry automated BioContainers addition for bioconductor-fella |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fem |
shpc-registry automated BioContainers addition for bioconductor-fem |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fenr |
singularity registry hpc automated addition for bioconductor-fenr |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ffpe |
shpc-registry automated BioContainers addition for bioconductor-ffpe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ffpeexampledata |
shpc-registry automated BioContainers addition for bioconductor-ffpeexampledata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fgga |
shpc-registry automated BioContainers addition for bioconductor-fgga |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fgnet |
shpc-registry automated BioContainers addition for bioconductor-fgnet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fgsea |
shpc-registry automated BioContainers addition for bioconductor-fgsea |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fibroeset |
shpc-registry automated BioContainers addition for bioconductor-fibroeset |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fieldeffectcrc |
shpc-registry automated BioContainers addition for bioconductor-fieldeffectcrc |
pandoc-server, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-filterffpe |
shpc-registry automated BioContainers addition for bioconductor-filterffpe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-findit2 |
singularity registry hpc automated addition for bioconductor-findit2 |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-findmyfriends |
shpc-registry automated BioContainers addition for bioconductor-findmyfriends |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fis |
shpc-registry automated BioContainers addition for bioconductor-fis |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fishalyser |
shpc-registry automated BioContainers addition for bioconductor-fishalyser |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fishpond |
shpc-registry automated BioContainers addition for bioconductor-fishpond |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fission |
shpc-registry automated BioContainers addition for bioconductor-fission |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fitcons.ucsc.hg19 |
shpc-registry automated BioContainers addition for bioconductor-fitcons.ucsc.hg19 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fithic |
shpc-registry automated BioContainers addition for bioconductor-fithic |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flagme |
shpc-registry automated BioContainers addition for bioconductor-flagme |
zipcmp, zipmerge, ziptool, gif2hdf, glpsol, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flames |
shpc-registry automated BioContainers addition for bioconductor-flames |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fletcher2013a |
shpc-registry automated BioContainers addition for bioconductor-fletcher2013a |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fletcher2013b |
shpc-registry automated BioContainers addition for bioconductor-fletcher2013b |
glpsol, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flipflop |
shpc-registry automated BioContainers addition for bioconductor-flipflop |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowai |
shpc-registry automated BioContainers addition for bioconductor-flowai |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowbeads |
shpc-registry automated BioContainers addition for bioconductor-flowbeads |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowbin |
shpc-registry automated BioContainers addition for bioconductor-flowbin |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowcatchr |
shpc-registry automated BioContainers addition for bioconductor-flowcatchr |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowchic |
shpc-registry automated BioContainers addition for bioconductor-flowchic |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowcl |
shpc-registry automated BioContainers addition for bioconductor-flowcl |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowclean |
shpc-registry automated BioContainers addition for bioconductor-flowclean |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowclust |
shpc-registry automated BioContainers addition for bioconductor-flowclust |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowcore |
shpc-registry automated BioContainers addition for bioconductor-flowcore |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowcut |
shpc-registry automated BioContainers addition for bioconductor-flowcut |
geosop, geos-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowcybar |
shpc-registry automated BioContainers addition for bioconductor-flowcybar |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowdensity |
shpc-registry automated BioContainers addition for bioconductor-flowdensity |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowfit |
shpc-registry automated BioContainers addition for bioconductor-flowfit |
mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, mpifort, mpic++, mpicc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowfitexampledata |
shpc-registry automated BioContainers addition for bioconductor-flowfitexampledata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowfp |
shpc-registry automated BioContainers addition for bioconductor-flowfp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowgate |
singularity registry hpc automated addition for bioconductor-flowgate |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowgraph |
shpc-registry automated BioContainers addition for bioconductor-flowgraph |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowmap |
shpc-registry automated BioContainers addition for bioconductor-flowmap |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowmatch |
shpc-registry automated BioContainers addition for bioconductor-flowmatch |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowmeans |
shpc-registry automated BioContainers addition for bioconductor-flowmeans |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowmerge |
shpc-registry automated BioContainers addition for bioconductor-flowmerge |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowpeaks |
shpc-registry automated BioContainers addition for bioconductor-flowpeaks |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowploidy |
shpc-registry automated BioContainers addition for bioconductor-flowploidy |
pandoc-citeproc, pandoc, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowploidydata |
shpc-registry automated BioContainers addition for bioconductor-flowploidydata |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowplots |
shpc-registry automated BioContainers addition for bioconductor-flowplots |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowq |
shpc-registry automated BioContainers addition for bioconductor-flowq |
-pkg-config, croco-0.6-config, csslint-0.6, x86_64-unknown-linux-gnu-pkg-config, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, gifecho, gifinto, Magick++-config, MagickCore-config, MagickWand-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowqb |
shpc-registry automated BioContainers addition for bioconductor-flowqb |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowqbdata |
shpc-registry automated BioContainers addition for bioconductor-flowqbdata |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowrepositoryr |
shpc-registry automated BioContainers addition for bioconductor-flowrepositoryr |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowsom |
shpc-registry automated BioContainers addition for bioconductor-flowsom |
glpsol, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowsorted.blood.450k |
shpc-registry automated BioContainers addition for bioconductor-flowsorted.blood.450k |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowsorted.blood.epic |
shpc-registry automated BioContainers addition for bioconductor-flowsorted.blood.epic |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowsorted.cordblood.450k |
shpc-registry automated BioContainers addition for bioconductor-flowsorted.cordblood.450k |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowsorted.cordbloodcombined.450k |
shpc-registry automated BioContainers addition for bioconductor-flowsorted.cordbloodcombined.450k |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowsorted.cordbloodnorway.450k |
shpc-registry automated BioContainers addition for bioconductor-flowsorted.cordbloodnorway.450k |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowsorted.dlpfc.450k |
shpc-registry automated BioContainers addition for bioconductor-flowsorted.dlpfc.450k |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowspecs |
shpc-registry automated BioContainers addition for bioconductor-flowspecs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowspy |
shpc-registry automated BioContainers addition for bioconductor-flowspy |
pandoc, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowstats |
shpc-registry automated BioContainers addition for bioconductor-flowstats |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowtime |
shpc-registry automated BioContainers addition for bioconductor-flowtime |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowtrans |
shpc-registry automated BioContainers addition for bioconductor-flowtrans |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowtype |
shpc-registry automated BioContainers addition for bioconductor-flowtype |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowutils |
shpc-registry automated BioContainers addition for bioconductor-flowutils |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowviz |
shpc-registry automated BioContainers addition for bioconductor-flowviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowvs |
shpc-registry automated BioContainers addition for bioconductor-flowvs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowworkspace |
shpc-registry automated BioContainers addition for bioconductor-flowworkspace |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-flowworkspacedata |
shpc-registry automated BioContainers addition for bioconductor-flowworkspacedata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fly.db0 |
shpc-registry automated BioContainers addition for bioconductor-fly.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fmcsr |
shpc-registry automated BioContainers addition for bioconductor-fmcsr |
rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fmrs |
shpc-registry automated BioContainers addition for bioconductor-fmrs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fobitools |
shpc-registry automated BioContainers addition for bioconductor-fobitools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-focalcall |
shpc-registry automated BioContainers addition for bioconductor-focalcall |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-foldgo |
shpc-registry automated BioContainers addition for bioconductor-foldgo |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fourcseq |
shpc-registry automated BioContainers addition for bioconductor-fourcseq |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fourdndata |
singularity registry hpc automated addition for bioconductor-fourdndata |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fraser |
shpc-registry automated BioContainers addition for bioconductor-fraser |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-frenchfish |
shpc-registry automated BioContainers addition for bioconductor-frenchfish |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-frgepistasis |
shpc-registry automated BioContainers addition for bioconductor-frgepistasis |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-frma |
shpc-registry automated BioContainers addition for bioconductor-frma |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-frmaexampledata |
shpc-registry automated BioContainers addition for bioconductor-frmaexampledata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-frmatools |
shpc-registry automated BioContainers addition for bioconductor-frmatools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-fscanr |
shpc-registry automated BioContainers addition for bioconductor-fscanr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-funchip |
shpc-registry automated BioContainers addition for bioconductor-funchip |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-funcisnp.data |
shpc-registry automated BioContainers addition for bioconductor-funcisnp.data |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-funcisnp |
shpc-registry automated BioContainers addition for bioconductor-funcisnp |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-funtoonorm |
shpc-registry automated BioContainers addition for bioconductor-funtoonorm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-furrowseg |
shpc-registry automated BioContainers addition for bioconductor-furrowseg |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-fusesom |
singularity registry hpc automated addition for bioconductor-fusesom |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ga4ghclient |
shpc-registry automated BioContainers addition for bioconductor-ga4ghclient |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ga4ghshiny |
shpc-registry automated BioContainers addition for bioconductor-ga4ghshiny |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gaga |
shpc-registry automated BioContainers addition for bioconductor-gaga |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gage |
shpc-registry automated BioContainers addition for bioconductor-gage |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gagedata |
shpc-registry automated BioContainers addition for bioconductor-gagedata |
tclsh8.5, wish8.5, ncurses5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gaggle |
shpc-registry automated BioContainers addition for bioconductor-gaggle |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gaia |
shpc-registry automated BioContainers addition for bioconductor-gaia |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gapgom |
shpc-registry automated BioContainers addition for bioconductor-gapgom |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gaprediction |
shpc-registry automated BioContainers addition for bioconductor-gaprediction |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-garfield |
shpc-registry automated BioContainers addition for bioconductor-garfield |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gars |
shpc-registry automated BioContainers addition for bioconductor-gars |
extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gaschyhs |
shpc-registry automated BioContainers addition for bioconductor-gaschyhs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gatefinder |
shpc-registry automated BioContainers addition for bioconductor-gatefinder |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gatingmldata |
shpc-registry automated BioContainers addition for bioconductor-gatingmldata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gbscleanr |
singularity registry hpc automated addition for bioconductor-gbscleanr |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gcapc |
shpc-registry automated BioContainers addition for bioconductor-gcapc |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gcatest |
shpc-registry automated BioContainers addition for bioconductor-gcatest |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gcmap |
shpc-registry automated BioContainers addition for bioconductor-gcmap |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gcmapweb |
shpc-registry automated BioContainers addition for bioconductor-gcmapweb |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gcrisprtools |
shpc-registry automated BioContainers addition for bioconductor-gcrisprtools |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gcrma |
shpc-registry automated BioContainers addition for bioconductor-gcrma |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gcsconnection |
shpc-registry automated BioContainers addition for bioconductor-gcsconnection |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gcsfilesystem |
shpc-registry automated BioContainers addition for bioconductor-gcsfilesystem |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gcspikelite |
shpc-registry automated BioContainers addition for bioconductor-gcspikelite |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gcsscore |
shpc-registry automated BioContainers addition for bioconductor-gcsscore |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gdcrnatools |
shpc-registry automated BioContainers addition for bioconductor-gdcrnatools |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gdnainrnaseqdata |
singularity registry hpc automated addition for bioconductor-gdnainrnaseqdata |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gdnax |
singularity registry hpc automated addition for bioconductor-gdnax |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gdrcore |
singularity registry hpc automated addition for bioconductor-gdrcore |
protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gdrimport |
singularity registry hpc automated addition for bioconductor-gdrimport |
protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gdrstyle |
singularity registry hpc automated addition for bioconductor-gdrstyle |
git2, pcre2posix_test, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gdrtestdata |
singularity registry hpc automated addition for bioconductor-gdrtestdata |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gdrutils |
singularity registry hpc automated addition for bioconductor-gdrutils |
protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gdsarray |
shpc-registry automated BioContainers addition for bioconductor-gdsarray |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gdsfmt |
shpc-registry automated BioContainers addition for bioconductor-gdsfmt |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geecc |
shpc-registry automated BioContainers addition for bioconductor-geecc |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gem |
shpc-registry automated BioContainers addition for bioconductor-gem |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gemini |
shpc-registry automated BioContainers addition for bioconductor-gemini |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gemma.r |
singularity registry hpc automated addition for bioconductor-gemma.r |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genarise |
shpc-registry automated BioContainers addition for bioconductor-genarise |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genbankr |
shpc-registry automated BioContainers addition for bioconductor-genbankr |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneaccord |
shpc-registry automated BioContainers addition for bioconductor-geneaccord |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneanswers |
shpc-registry automated BioContainers addition for bioconductor-geneanswers |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneattribution |
shpc-registry automated BioContainers addition for bioconductor-geneattribution |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genebreak |
shpc-registry automated BioContainers addition for bioconductor-genebreak |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneclassifiers |
shpc-registry automated BioContainers addition for bioconductor-geneclassifiers |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneexpressionsignature |
shpc-registry automated BioContainers addition for bioconductor-geneexpressionsignature |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genefilter |
shpc-registry automated BioContainers addition for bioconductor-genefilter |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-genefu |
shpc-registry automated BioContainers addition for bioconductor-genefu |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-genega |
shpc-registry automated BioContainers addition for bioconductor-genega |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genegeneinter |
shpc-registry automated BioContainers addition for bioconductor-genegeneinter |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genelendatabase |
shpc-registry automated BioContainers addition for bioconductor-genelendatabase |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genemeta |
shpc-registry automated BioContainers addition for bioconductor-genemeta |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-genenetworkbuilder |
shpc-registry automated BioContainers addition for bioconductor-genenetworkbuilder |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-geneoverlap |
shpc-registry automated BioContainers addition for bioconductor-geneoverlap |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-geneplast.data |
shpc-registry automated BioContainers addition for bioconductor-geneplast.data |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneplast.data.string.v91 |
shpc-registry automated BioContainers addition for bioconductor-geneplast.data.string.v91 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneplast |
shpc-registry automated BioContainers addition for bioconductor-geneplast |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneplotter |
shpc-registry automated BioContainers addition for bioconductor-geneplotter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-generecommender |
shpc-registry automated BioContainers addition for bioconductor-generecommender |
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GITHUB
|
quay.io/biocontainers/bioconductor-generegionscan |
shpc-registry automated BioContainers addition for bioconductor-generegionscan |
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GITHUB
|
quay.io/biocontainers/bioconductor-generxcluster |
shpc-registry automated BioContainers addition for bioconductor-generxcluster |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-geneselectmmd |
shpc-registry automated BioContainers addition for bioconductor-geneselectmmd |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneselector |
shpc-registry automated BioContainers addition for bioconductor-geneselector |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genesis |
shpc-registry automated BioContainers addition for bioconductor-genesis |
glpsol, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genestructuretools |
shpc-registry automated BioContainers addition for bioconductor-genestructuretools |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genesummary |
shpc-registry automated BioContainers addition for bioconductor-genesummary |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genetclassifier |
shpc-registry automated BioContainers addition for bioconductor-genetclassifier |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneticsdesign |
shpc-registry automated BioContainers addition for bioconductor-geneticsdesign |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-geneticsped |
shpc-registry automated BioContainers addition for bioconductor-geneticsped |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genetonic |
shpc-registry automated BioContainers addition for bioconductor-genetonic |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genextender |
shpc-registry automated BioContainers addition for bioconductor-genextender |
pandoc-citeproc, pandoc, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genie3 |
shpc-registry automated BioContainers addition for bioconductor-genie3 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genocn |
shpc-registry automated BioContainers addition for bioconductor-genocn |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genogam |
shpc-registry automated BioContainers addition for bioconductor-genogam |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomation |
shpc-registry automated BioContainers addition for bioconductor-genomation |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomationdata |
shpc-registry automated BioContainers addition for bioconductor-genomationdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomautomorphism |
singularity registry hpc automated addition for bioconductor-genomautomorphism |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomegraphs |
shpc-registry automated BioContainers addition for bioconductor-genomegraphs |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomeinfodb |
shpc-registry automated BioContainers addition for bioconductor-genomeinfodb |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomeinfodbdata |
shpc-registry automated BioContainers addition for bioconductor-genomeinfodbdata |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-genomeintervals |
shpc-registry automated BioContainers addition for bioconductor-genomeintervals |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-genomes |
shpc-registry automated BioContainers addition for bioconductor-genomes |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomewidesnp5crlmm |
shpc-registry automated BioContainers addition for bioconductor-genomewidesnp5crlmm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomewidesnp6crlmm |
shpc-registry automated BioContainers addition for bioconductor-genomewidesnp6crlmm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicalignments |
shpc-registry automated BioContainers addition for bioconductor-genomicalignments |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicdatacommons |
shpc-registry automated BioContainers addition for bioconductor-genomicdatacommons |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicdistributions |
shpc-registry automated BioContainers addition for bioconductor-genomicdistributions |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicdistributionsdata |
shpc-registry automated BioContainers addition for bioconductor-genomicdistributionsdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicfeatures |
shpc-registry automated BioContainers addition for bioconductor-genomicfeatures |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicfiles |
shpc-registry automated BioContainers addition for bioconductor-genomicfiles |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicinstability |
shpc-registry automated BioContainers addition for bioconductor-genomicinstability |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicinteractionnodes |
singularity registry hpc automated addition for bioconductor-genomicinteractionnodes |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicinteractions |
shpc-registry automated BioContainers addition for bioconductor-genomicinteractions |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicozone |
shpc-registry automated BioContainers addition for bioconductor-genomicozone |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicplot |
singularity registry hpc automated addition for bioconductor-genomicplot |
protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicranges |
shpc-registry automated BioContainers addition for bioconductor-genomicranges |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicscores |
shpc-registry automated BioContainers addition for bioconductor-genomicscores |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicstate |
shpc-registry automated BioContainers addition for bioconductor-genomicstate |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomicsupersignature |
shpc-registry automated BioContainers addition for bioconductor-genomicsupersignature |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genomictuples |
shpc-registry automated BioContainers addition for bioconductor-genomictuples |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genominator |
shpc-registry automated BioContainers addition for bioconductor-genominator |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genoset |
shpc-registry automated BioContainers addition for bioconductor-genoset |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genotypeeval |
shpc-registry automated BioContainers addition for bioconductor-genotypeeval |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genphen |
shpc-registry automated BioContainers addition for bioconductor-genphen |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-genproseq |
singularity registry hpc automated addition for bioconductor-genproseq |
git2_cli, jpackage, cups-config, ippeveprinter, ipptool, glpsol, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genrank |
shpc-registry automated BioContainers addition for bioconductor-genrank |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-genvisr |
shpc-registry automated BioContainers addition for bioconductor-genvisr |
my_print_defaults, mysql_config, perror, wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-geodiff |
shpc-registry automated BioContainers addition for bioconductor-geodiff |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-geoexplorer |
shpc-registry automated BioContainers addition for bioconductor-geoexplorer |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-geofastq |
shpc-registry automated BioContainers addition for bioconductor-geofastq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geometadb |
shpc-registry automated BioContainers addition for bioconductor-geometadb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geomxtools |
shpc-registry automated BioContainers addition for bioconductor-geomxtools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geoquery |
shpc-registry automated BioContainers addition for bioconductor-geoquery |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geosubmission |
shpc-registry automated BioContainers addition for bioconductor-geosubmission |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geotcgadata |
singularity registry hpc automated addition for bioconductor-geotcgadata |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gep2pep |
shpc-registry automated BioContainers addition for bioconductor-gep2pep |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gesper |
shpc-registry automated BioContainers addition for bioconductor-gesper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-getdee2 |
shpc-registry automated BioContainers addition for bioconductor-getdee2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geuvadistranscriptexpr |
shpc-registry automated BioContainers addition for bioconductor-geuvadistranscriptexpr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-geuvpack |
shpc-registry automated BioContainers addition for bioconductor-geuvpack |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-geuvstore2 |
shpc-registry automated BioContainers addition for bioconductor-geuvstore2 |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-geva |
shpc-registry automated BioContainers addition for bioconductor-geva |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gewist |
shpc-registry automated BioContainers addition for bioconductor-gewist |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gg4way |
singularity registry hpc automated addition for bioconductor-gg4way |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggbase |
shpc-registry automated BioContainers addition for bioconductor-ggbase |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggbio |
shpc-registry automated BioContainers addition for bioconductor-ggbio |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggcyto |
shpc-registry automated BioContainers addition for bioconductor-ggcyto |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggdata |
shpc-registry automated BioContainers addition for bioconductor-ggdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gghumanmethcancerpanelv1.db |
shpc-registry automated BioContainers addition for bioconductor-gghumanmethcancerpanelv1.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggkegg |
singularity registry hpc automated addition for bioconductor-ggkegg |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, display, identify, import, magick, magick-script, mogrify, montage, convert, pkg-config, pkg-config.bin, stream, compare |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggmanh |
singularity registry hpc automated addition for bioconductor-ggmanh |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggmsa |
shpc-registry automated BioContainers addition for bioconductor-ggmsa |
projsync, invgeod, invproj, projinfo, cct, gie, cs2cs, geod, proj |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggpa |
shpc-registry automated BioContainers addition for bioconductor-ggpa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggsc |
singularity registry hpc automated addition for bioconductor-ggsc |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggspavis |
shpc-registry automated BioContainers addition for bioconductor-ggspavis |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggtools |
shpc-registry automated BioContainers addition for bioconductor-ggtools |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggtree |
shpc-registry automated BioContainers addition for bioconductor-ggtree |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggtreedendro |
singularity registry hpc automated addition for bioconductor-ggtreedendro |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ggtreeextra |
shpc-registry automated BioContainers addition for bioconductor-ggtreeextra |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gigsea |
shpc-registry automated BioContainers addition for bioconductor-gigsea |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gigseadata |
shpc-registry automated BioContainers addition for bioconductor-gigseadata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-girafe |
shpc-registry automated BioContainers addition for bioconductor-girafe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gispa |
shpc-registry automated BioContainers addition for bioconductor-gispa |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-glad |
shpc-registry automated BioContainers addition for bioconductor-glad |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gladiatox |
shpc-registry automated BioContainers addition for bioconductor-gladiatox |
my_print_defaults, mysql_config, perror, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-glimma |
shpc-registry automated BioContainers addition for bioconductor-glimma |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-glmgampoi |
shpc-registry automated BioContainers addition for bioconductor-glmgampoi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-glmsparsenet |
shpc-registry automated BioContainers addition for bioconductor-glmsparsenet |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-globalancova |
shpc-registry automated BioContainers addition for bioconductor-globalancova |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-globalseq |
shpc-registry automated BioContainers addition for bioconductor-globalseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-globaltest |
shpc-registry automated BioContainers addition for bioconductor-globaltest |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gloscope |
singularity registry hpc automated addition for bioconductor-gloscope |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gmapr |
shpc-registry automated BioContainers addition for bioconductor-gmapr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gmicr |
shpc-registry automated BioContainers addition for bioconductor-gmicr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gmoviz |
shpc-registry automated BioContainers addition for bioconductor-gmoviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gmrp |
shpc-registry automated BioContainers addition for bioconductor-gmrp |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gnet2 |
shpc-registry automated BioContainers addition for bioconductor-gnet2 |
xgboost, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gnosis |
singularity registry hpc automated addition for bioconductor-gnosis |
protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-go.db |
shpc-registry automated BioContainers addition for bioconductor-go.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-goexpress |
shpc-registry automated BioContainers addition for bioconductor-goexpress |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gofuncr |
shpc-registry automated BioContainers addition for bioconductor-gofuncr |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gofunction |
shpc-registry automated BioContainers addition for bioconductor-gofunction |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-golubesets |
shpc-registry automated BioContainers addition for bioconductor-golubesets |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-googlegenomics |
shpc-registry automated BioContainers addition for bioconductor-googlegenomics |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gopro |
shpc-registry automated BioContainers addition for bioconductor-gopro |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-goprofiles |
shpc-registry automated BioContainers addition for bioconductor-goprofiles |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gosemsim |
shpc-registry automated BioContainers addition for bioconductor-gosemsim |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-goseq |
shpc-registry automated BioContainers addition for bioconductor-goseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gosim |
shpc-registry automated BioContainers addition for bioconductor-gosim |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gosorensen |
singularity registry hpc automated addition for bioconductor-gosorensen |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gostag |
shpc-registry automated BioContainers addition for bioconductor-gostag |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gostats |
shpc-registry automated BioContainers addition for bioconductor-gostats |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-gosummaries |
shpc-registry automated BioContainers addition for bioconductor-gosummaries |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-gothic |
shpc-registry automated BioContainers addition for bioconductor-gothic |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-gotools |
shpc-registry automated BioContainers addition for bioconductor-gotools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gp53cdf |
shpc-registry automated BioContainers addition for bioconductor-gp53cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gpa |
shpc-registry automated BioContainers addition for bioconductor-gpa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gpaexample |
shpc-registry automated BioContainers addition for bioconductor-gpaexample |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gpart |
shpc-registry automated BioContainers addition for bioconductor-gpart |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gpls |
shpc-registry automated BioContainers addition for bioconductor-gpls |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gprege |
shpc-registry automated BioContainers addition for bioconductor-gprege |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gpumagic |
shpc-registry automated BioContainers addition for bioconductor-gpumagic |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gqtlbase |
shpc-registry automated BioContainers addition for bioconductor-gqtlbase |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gqtlstats |
shpc-registry automated BioContainers addition for bioconductor-gqtlstats |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gramm4r |
shpc-registry automated BioContainers addition for bioconductor-gramm4r |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-granie |
singularity registry hpc automated addition for bioconductor-granie |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-granulator |
shpc-registry automated BioContainers addition for bioconductor-granulator |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-graper |
shpc-registry automated BioContainers addition for bioconductor-graper |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-graph |
shpc-registry automated BioContainers addition for bioconductor-graph |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-graphalignment |
shpc-registry automated BioContainers addition for bioconductor-graphalignment |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-graphat |
shpc-registry automated BioContainers addition for bioconductor-graphat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-graphite |
shpc-registry automated BioContainers addition for bioconductor-graphite |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-graphpac |
shpc-registry automated BioContainers addition for bioconductor-graphpac |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-grasp2db |
shpc-registry automated BioContainers addition for bioconductor-grasp2db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-greengenes13.5mgdb |
shpc-registry automated BioContainers addition for bioconductor-greengenes13.5mgdb |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-grenits |
shpc-registry automated BioContainers addition for bioconductor-grenits |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-greylistchip |
shpc-registry automated BioContainers addition for bioconductor-greylistchip |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-grmetrics |
shpc-registry automated BioContainers addition for bioconductor-grmetrics |
idn2, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-grndata |
shpc-registry automated BioContainers addition for bioconductor-grndata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-grohmm |
shpc-registry automated BioContainers addition for bioconductor-grohmm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-grridge |
shpc-registry automated BioContainers addition for bioconductor-grridge |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gsalightning |
shpc-registry automated BioContainers addition for bioconductor-gsalightning |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gsar |
shpc-registry automated BioContainers addition for bioconductor-gsar |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gsbenchmark |
shpc-registry automated BioContainers addition for bioconductor-gsbenchmark |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gsca |
shpc-registry automated BioContainers addition for bioconductor-gsca |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gscreend |
shpc-registry automated BioContainers addition for bioconductor-gscreend |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gse103322 |
shpc-registry automated BioContainers addition for bioconductor-gse103322 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gse13015 |
shpc-registry automated BioContainers addition for bioconductor-gse13015 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gse159526 |
shpc-registry automated BioContainers addition for bioconductor-gse159526 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gse62944 |
shpc-registry automated BioContainers addition for bioconductor-gse62944 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gseabase |
shpc-registry automated BioContainers addition for bioconductor-gseabase |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gseabenchmarker |
shpc-registry automated BioContainers addition for bioconductor-gseabenchmarker |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gsealm |
shpc-registry automated BioContainers addition for bioconductor-gsealm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gseamining |
shpc-registry automated BioContainers addition for bioconductor-gseamining |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gsean |
shpc-registry automated BioContainers addition for bioconductor-gsean |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gsgalgor |
shpc-registry automated BioContainers addition for bioconductor-gsgalgor |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gskb |
shpc-registry automated BioContainers addition for bioconductor-gskb |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gsreg |
shpc-registry automated BioContainers addition for bioconductor-gsreg |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gsri |
shpc-registry automated BioContainers addition for bioconductor-gsri |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gsva |
shpc-registry automated BioContainers addition for bioconductor-gsva |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gsvadata |
shpc-registry automated BioContainers addition for bioconductor-gsvadata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gtrellis |
shpc-registry automated BioContainers addition for bioconductor-gtrellis |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-guideseq |
shpc-registry automated BioContainers addition for bioconductor-guideseq |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-guitar |
shpc-registry automated BioContainers addition for bioconductor-guitar |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gviz |
shpc-registry automated BioContainers addition for bioconductor-gviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gwas.bayes |
shpc-registry automated BioContainers addition for bioconductor-gwas.bayes |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gwascat |
shpc-registry automated BioContainers addition for bioconductor-gwascat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gwascatdata |
shpc-registry automated BioContainers addition for bioconductor-gwascatdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gwasdata |
shpc-registry automated BioContainers addition for bioconductor-gwasdata |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gwastools |
shpc-registry automated BioContainers addition for bioconductor-gwastools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-gwasurvivr |
shpc-registry automated BioContainers addition for bioconductor-gwasurvivr |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-gwena |
shpc-registry automated BioContainers addition for bioconductor-gwena |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-h10kcod.db |
shpc-registry automated BioContainers addition for bioconductor-h10kcod.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-h20kcod.db |
shpc-registry automated BioContainers addition for bioconductor-h20kcod.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-h5vc |
shpc-registry automated BioContainers addition for bioconductor-h5vc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-h5vcdata |
shpc-registry automated BioContainers addition for bioconductor-h5vcdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hapfabia |
shpc-registry automated BioContainers addition for bioconductor-hapfabia |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hapmap100khind |
shpc-registry automated BioContainers addition for bioconductor-hapmap100khind |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hapmap100kxba |
shpc-registry automated BioContainers addition for bioconductor-hapmap100kxba |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hapmap370k |
shpc-registry automated BioContainers addition for bioconductor-hapmap370k |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hapmap500knsp |
shpc-registry automated BioContainers addition for bioconductor-hapmap500knsp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hapmap500ksty |
shpc-registry automated BioContainers addition for bioconductor-hapmap500ksty |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hapmapsnp5 |
shpc-registry automated BioContainers addition for bioconductor-hapmapsnp5 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hapmapsnp6 |
shpc-registry automated BioContainers addition for bioconductor-hapmapsnp6 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-harbchip |
shpc-registry automated BioContainers addition for bioconductor-harbchip |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-harman |
shpc-registry automated BioContainers addition for bioconductor-harman |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-harmandata |
shpc-registry automated BioContainers addition for bioconductor-harmandata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-harmonizedtcgadata |
shpc-registry automated BioContainers addition for bioconductor-harmonizedtcgadata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-harmonizr |
singularity registry hpc automated addition for bioconductor-harmonizr |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-harshlight |
shpc-registry automated BioContainers addition for bioconductor-harshlight |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hca |
shpc-registry automated BioContainers addition for bioconductor-hca |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hcabrowser |
shpc-registry automated BioContainers addition for bioconductor-hcabrowser |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hcadata |
shpc-registry automated BioContainers addition for bioconductor-hcadata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hcaexplorer |
shpc-registry automated BioContainers addition for bioconductor-hcaexplorer |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
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quay.io/biocontainers/bioconductor-hcamatrixbrowser |
shpc-registry automated BioContainers addition for bioconductor-hcamatrixbrowser |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hcatonsildata |
singularity registry hpc automated addition for bioconductor-hcatonsildata |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, display, identify, import, magick, magick-script, mogrify, montage, convert, pkg-config, pkg-config.bin, stream, compare |
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GITHUB
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quay.io/biocontainers/bioconductor-hcg110.db |
shpc-registry automated BioContainers addition for bioconductor-hcg110.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hcg110cdf |
shpc-registry automated BioContainers addition for bioconductor-hcg110cdf |
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GITHUB
|
quay.io/biocontainers/bioconductor-hcg110probe |
shpc-registry automated BioContainers addition for bioconductor-hcg110probe |
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GITHUB
|
quay.io/biocontainers/bioconductor-hd2013sgi |
shpc-registry automated BioContainers addition for bioconductor-hd2013sgi |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
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quay.io/biocontainers/bioconductor-hdcytodata |
shpc-registry automated BioContainers addition for bioconductor-hdcytodata |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
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quay.io/biocontainers/bioconductor-hdf5array |
shpc-registry automated BioContainers addition for bioconductor-hdf5array |
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GITHUB
|
quay.io/biocontainers/bioconductor-hdo.db |
singularity registry hpc automated addition for bioconductor-hdo.db |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/bioconductor-hdtd |
shpc-registry automated BioContainers addition for bioconductor-hdtd |
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GITHUB
|
quay.io/biocontainers/bioconductor-healthycontrolspresencechecker |
singularity registry hpc automated addition for bioconductor-healthycontrolspresencechecker |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/bioconductor-healthyflowdata |
shpc-registry automated BioContainers addition for bioconductor-healthyflowdata |
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GITHUB
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quay.io/biocontainers/bioconductor-heatmaps |
shpc-registry automated BioContainers addition for bioconductor-heatmaps |
mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, mpifort, mpic++, mpicc |
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GITHUB
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quay.io/biocontainers/bioconductor-heatplus |
shpc-registry automated BioContainers addition for bioconductor-heatplus |
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GITHUB
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quay.io/biocontainers/bioconductor-heebodata |
shpc-registry automated BioContainers addition for bioconductor-heebodata |
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GITHUB
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quay.io/biocontainers/bioconductor-helloranges |
shpc-registry automated BioContainers addition for bioconductor-helloranges |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hellorangesdata |
shpc-registry automated BioContainers addition for bioconductor-hellorangesdata |
wget, c89, c99 |
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GITHUB
|
quay.io/biocontainers/bioconductor-help |
shpc-registry automated BioContainers addition for bioconductor-help |
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GITHUB
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quay.io/biocontainers/bioconductor-hem |
shpc-registry automated BioContainers addition for bioconductor-hem |
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GITHUB
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quay.io/biocontainers/bioconductor-hermes |
singularity registry hpc automated addition for bioconductor-hermes |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/bioconductor-heron |
singularity registry hpc automated addition for bioconductor-heron |
bsdunzip, gdal_footprint, h5tools_test_utils, minigzip, minizip, protoc-24.4.0, sozip, h5fuse.sh, pg_amcheck, pcre2posix_test, gdal_create, pdfsig, bsdcat, bsdcpio, bsdtar, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pdfattach, pg_verifybackup, projsync, gdal-config, gdal_contour, gdal_grid, gdal_rasterize |
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GITHUB
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quay.io/biocontainers/bioconductor-herper |
shpc-registry automated BioContainers addition for bioconductor-herper |
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GITHUB
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quay.io/biocontainers/bioconductor-hgc |
shpc-registry automated BioContainers addition for bioconductor-hgc |
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GITHUB
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quay.io/biocontainers/bioconductor-hgfocus.db |
shpc-registry automated BioContainers addition for bioconductor-hgfocus.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hgfocuscdf |
shpc-registry automated BioContainers addition for bioconductor-hgfocuscdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgfocusprobe |
shpc-registry automated BioContainers addition for bioconductor-hgfocusprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133a.db |
shpc-registry automated BioContainers addition for bioconductor-hgu133a.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133a2.db |
shpc-registry automated BioContainers addition for bioconductor-hgu133a2.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133a2cdf |
shpc-registry automated BioContainers addition for bioconductor-hgu133a2cdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133a2frmavecs |
shpc-registry automated BioContainers addition for bioconductor-hgu133a2frmavecs |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133a2probe |
shpc-registry automated BioContainers addition for bioconductor-hgu133a2probe |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133abarcodevecs |
shpc-registry automated BioContainers addition for bioconductor-hgu133abarcodevecs |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133acdf |
shpc-registry automated BioContainers addition for bioconductor-hgu133acdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133afrmavecs |
shpc-registry automated BioContainers addition for bioconductor-hgu133afrmavecs |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133aprobe |
shpc-registry automated BioContainers addition for bioconductor-hgu133aprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133atagcdf |
shpc-registry automated BioContainers addition for bioconductor-hgu133atagcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133atagprobe |
shpc-registry automated BioContainers addition for bioconductor-hgu133atagprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133b.db |
shpc-registry automated BioContainers addition for bioconductor-hgu133b.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133bcdf |
shpc-registry automated BioContainers addition for bioconductor-hgu133bcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133bprobe |
shpc-registry automated BioContainers addition for bioconductor-hgu133bprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133plus2.db |
shpc-registry automated BioContainers addition for bioconductor-hgu133plus2.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133plus2barcodevecs |
shpc-registry automated BioContainers addition for bioconductor-hgu133plus2barcodevecs |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133plus2cdf |
shpc-registry automated BioContainers addition for bioconductor-hgu133plus2cdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133plus2cellscore |
shpc-registry automated BioContainers addition for bioconductor-hgu133plus2cellscore |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133plus2frmavecs |
shpc-registry automated BioContainers addition for bioconductor-hgu133plus2frmavecs |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu133plus2probe |
shpc-registry automated BioContainers addition for bioconductor-hgu133plus2probe |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu219.db |
shpc-registry automated BioContainers addition for bioconductor-hgu219.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu219cdf |
shpc-registry automated BioContainers addition for bioconductor-hgu219cdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu219probe |
shpc-registry automated BioContainers addition for bioconductor-hgu219probe |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu2beta7 |
shpc-registry automated BioContainers addition for bioconductor-hgu2beta7 |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95a.db |
shpc-registry automated BioContainers addition for bioconductor-hgu95a.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95acdf |
shpc-registry automated BioContainers addition for bioconductor-hgu95acdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95aprobe |
shpc-registry automated BioContainers addition for bioconductor-hgu95aprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95av2.db |
shpc-registry automated BioContainers addition for bioconductor-hgu95av2.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95av2 |
shpc-registry automated BioContainers addition for bioconductor-hgu95av2 |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95av2cdf |
shpc-registry automated BioContainers addition for bioconductor-hgu95av2cdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95av2probe |
shpc-registry automated BioContainers addition for bioconductor-hgu95av2probe |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95b.db |
shpc-registry automated BioContainers addition for bioconductor-hgu95b.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95bcdf |
shpc-registry automated BioContainers addition for bioconductor-hgu95bcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95bprobe |
shpc-registry automated BioContainers addition for bioconductor-hgu95bprobe |
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GITHUB
|
quay.io/biocontainers/bioconductor-hgu95c.db |
shpc-registry automated BioContainers addition for bioconductor-hgu95c.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95ccdf |
shpc-registry automated BioContainers addition for bioconductor-hgu95ccdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95cprobe |
shpc-registry automated BioContainers addition for bioconductor-hgu95cprobe |
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GITHUB
|
quay.io/biocontainers/bioconductor-hgu95d.db |
shpc-registry automated BioContainers addition for bioconductor-hgu95d.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95dcdf |
shpc-registry automated BioContainers addition for bioconductor-hgu95dcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95dprobe |
shpc-registry automated BioContainers addition for bioconductor-hgu95dprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95e.db |
shpc-registry automated BioContainers addition for bioconductor-hgu95e.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95ecdf |
shpc-registry automated BioContainers addition for bioconductor-hgu95ecdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hgu95eprobe |
shpc-registry automated BioContainers addition for bioconductor-hgu95eprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hguatlas13k.db |
shpc-registry automated BioContainers addition for bioconductor-hguatlas13k.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hgubeta7.db |
shpc-registry automated BioContainers addition for bioconductor-hgubeta7.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hgudkfz31.db |
shpc-registry automated BioContainers addition for bioconductor-hgudkfz31.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hgug4100a.db |
shpc-registry automated BioContainers addition for bioconductor-hgug4100a.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hgug4101a.db |
shpc-registry automated BioContainers addition for bioconductor-hgug4101a.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hgug4110b.db |
shpc-registry automated BioContainers addition for bioconductor-hgug4110b.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hgug4111a.db |
shpc-registry automated BioContainers addition for bioconductor-hgug4111a.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hgug4112a.db |
shpc-registry automated BioContainers addition for bioconductor-hgug4112a.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hgug4845a.db |
shpc-registry automated BioContainers addition for bioconductor-hgug4845a.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hguqiagenv3.db |
shpc-registry automated BioContainers addition for bioconductor-hguqiagenv3.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hi16cod.db |
shpc-registry automated BioContainers addition for bioconductor-hi16cod.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hiannotator |
shpc-registry automated BioContainers addition for bioconductor-hiannotator |
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GITHUB
|
quay.io/biocontainers/bioconductor-hibag |
shpc-registry automated BioContainers addition for bioconductor-hibag |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-hibed |
singularity registry hpc automated addition for bioconductor-hibed |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
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quay.io/biocontainers/bioconductor-hicbricks |
shpc-registry automated BioContainers addition for bioconductor-hicbricks |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hiccompare |
shpc-registry automated BioContainers addition for bioconductor-hiccompare |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hicdatahumanimr90 |
shpc-registry automated BioContainers addition for bioconductor-hicdatahumanimr90 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
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quay.io/biocontainers/bioconductor-hicdatalymphoblast |
shpc-registry automated BioContainers addition for bioconductor-hicdatalymphoblast |
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GITHUB
|
quay.io/biocontainers/bioconductor-hicdcplus |
shpc-registry automated BioContainers addition for bioconductor-hicdcplus |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hicdoc |
singularity registry hpc automated addition for bioconductor-hicdoc |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
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quay.io/biocontainers/bioconductor-hicexperiment |
singularity registry hpc automated addition for bioconductor-hicexperiment |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hicontacts |
singularity registry hpc automated addition for bioconductor-hicontacts |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hicontactsdata |
singularity registry hpc automated addition for bioconductor-hicontactsdata |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hicool |
singularity registry hpc automated addition for bioconductor-hicool |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hicrep |
shpc-registry automated BioContainers addition for bioconductor-hicrep |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hicvenndiagram |
singularity registry hpc automated addition for bioconductor-hicvenndiagram |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hiergwas |
shpc-registry automated BioContainers addition for bioconductor-hiergwas |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-hierinf |
shpc-registry automated BioContainers addition for bioconductor-hierinf |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-highlyreplicatedrnaseq |
shpc-registry automated BioContainers addition for bioconductor-highlyreplicatedrnaseq |
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GITHUB
|
quay.io/biocontainers/bioconductor-hiiragi2013 |
shpc-registry automated BioContainers addition for bioconductor-hiiragi2013 |
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GITHUB
|
quay.io/biocontainers/bioconductor-hilbertcurve |
shpc-registry automated BioContainers addition for bioconductor-hilbertcurve |
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GITHUB
|
quay.io/biocontainers/bioconductor-hilbertvis |
shpc-registry automated BioContainers addition for bioconductor-hilbertvis |
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GITHUB
|
quay.io/biocontainers/bioconductor-hilda |
shpc-registry automated BioContainers addition for bioconductor-hilda |
jags |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hipathia |
shpc-registry automated BioContainers addition for bioconductor-hipathia |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hippo |
shpc-registry automated BioContainers addition for bioconductor-hippo |
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GITHUB
|
quay.io/biocontainers/bioconductor-hireadsprocessor |
shpc-registry automated BioContainers addition for bioconductor-hireadsprocessor |
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GITHUB
|
quay.io/biocontainers/bioconductor-hireewas |
shpc-registry automated BioContainers addition for bioconductor-hireewas |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hitc |
shpc-registry automated BioContainers addition for bioconductor-hitc |
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GITHUB
|
quay.io/biocontainers/bioconductor-hivcdnavantwout03 |
shpc-registry automated BioContainers addition for bioconductor-hivcdnavantwout03 |
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GITHUB
|
quay.io/biocontainers/bioconductor-hivprtplus2cdf |
shpc-registry automated BioContainers addition for bioconductor-hivprtplus2cdf |
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GITHUB
|
quay.io/biocontainers/bioconductor-hmdbquery |
shpc-registry automated BioContainers addition for bioconductor-hmdbquery |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
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GITHUB
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quay.io/biocontainers/bioconductor-hmmcopy |
shpc-registry automated BioContainers addition for bioconductor-hmmcopy |
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GITHUB
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quay.io/biocontainers/bioconductor-hmp16sdata |
shpc-registry automated BioContainers addition for bioconductor-hmp16sdata |
pandoc-citeproc, pandoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
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GITHUB
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quay.io/biocontainers/bioconductor-hmp2data |
shpc-registry automated BioContainers addition for bioconductor-hmp2data |
pandoc-server, glpsol, pandoc |
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GITHUB
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quay.io/biocontainers/bioconductor-hmyrib36 |
shpc-registry automated BioContainers addition for bioconductor-hmyrib36 |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hom.at.inp.db |
shpc-registry automated BioContainers addition for bioconductor-hom.at.inp.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hom.ce.inp.db |
shpc-registry automated BioContainers addition for bioconductor-hom.ce.inp.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hom.dm.inp.db |
shpc-registry automated BioContainers addition for bioconductor-hom.dm.inp.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hom.dr.inp.db |
shpc-registry automated BioContainers addition for bioconductor-hom.dr.inp.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hom.hs.inp.db |
shpc-registry automated BioContainers addition for bioconductor-hom.hs.inp.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hom.mm.inp.db |
shpc-registry automated BioContainers addition for bioconductor-hom.mm.inp.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hom.rn.inp.db |
shpc-registry automated BioContainers addition for bioconductor-hom.rn.inp.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hom.sc.inp.db |
shpc-registry automated BioContainers addition for bioconductor-hom.sc.inp.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-homo.sapiens |
shpc-registry automated BioContainers addition for bioconductor-homo.sapiens |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hoodscanr |
singularity registry hpc automated addition for bioconductor-hoodscanr |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, display, identify, import, magick, magick-script, mogrify, montage, convert, pkg-config, pkg-config.bin, stream, compare |
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GITHUB
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quay.io/biocontainers/bioconductor-hopach |
shpc-registry automated BioContainers addition for bioconductor-hopach |
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GITHUB
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quay.io/biocontainers/bioconductor-hpaanalyze |
shpc-registry automated BioContainers addition for bioconductor-hpaanalyze |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hpannot |
shpc-registry automated BioContainers addition for bioconductor-hpannot |
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GITHUB
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quay.io/biocontainers/bioconductor-hpar |
shpc-registry automated BioContainers addition for bioconductor-hpar |
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GITHUB
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quay.io/biocontainers/bioconductor-hpastainr |
shpc-registry automated BioContainers addition for bioconductor-hpastainr |
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GITHUB
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quay.io/biocontainers/bioconductor-hpip |
shpc-registry automated BioContainers addition for bioconductor-hpip |
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GITHUB
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quay.io/biocontainers/bioconductor-hpo.db |
singularity registry hpc automated addition for bioconductor-hpo.db |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
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GITHUB
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quay.io/biocontainers/bioconductor-hs25kresogen.db |
shpc-registry automated BioContainers addition for bioconductor-hs25kresogen.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hs6ug171.db |
shpc-registry automated BioContainers addition for bioconductor-hs6ug171.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hsagilentdesign026652.db |
shpc-registry automated BioContainers addition for bioconductor-hsagilentdesign026652.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hsmmsinglecell |
shpc-registry automated BioContainers addition for bioconductor-hsmmsinglecell |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hspec |
shpc-registry automated BioContainers addition for bioconductor-hspec |
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GITHUB
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quay.io/biocontainers/bioconductor-hspeccdf |
shpc-registry automated BioContainers addition for bioconductor-hspeccdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hta20probeset.db |
shpc-registry automated BioContainers addition for bioconductor-hta20probeset.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hta20transcriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-hta20transcriptcluster.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133a.db |
shpc-registry automated BioContainers addition for bioconductor-hthgu133a.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133acdf |
shpc-registry automated BioContainers addition for bioconductor-hthgu133acdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133afrmavecs |
shpc-registry automated BioContainers addition for bioconductor-hthgu133afrmavecs |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133aprobe |
shpc-registry automated BioContainers addition for bioconductor-hthgu133aprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133b.db |
shpc-registry automated BioContainers addition for bioconductor-hthgu133b.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133bcdf |
shpc-registry automated BioContainers addition for bioconductor-hthgu133bcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133bprobe |
shpc-registry automated BioContainers addition for bioconductor-hthgu133bprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133plusa.db |
shpc-registry automated BioContainers addition for bioconductor-hthgu133plusa.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133plusb.db |
shpc-registry automated BioContainers addition for bioconductor-hthgu133plusb.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133pluspm.db |
shpc-registry automated BioContainers addition for bioconductor-hthgu133pluspm.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133pluspmcdf |
shpc-registry automated BioContainers addition for bioconductor-hthgu133pluspmcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hthgu133pluspmprobe |
shpc-registry automated BioContainers addition for bioconductor-hthgu133pluspmprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-htmg430a.db |
shpc-registry automated BioContainers addition for bioconductor-htmg430a.db |
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GITHUB
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quay.io/biocontainers/bioconductor-htmg430acdf |
shpc-registry automated BioContainers addition for bioconductor-htmg430acdf |
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GITHUB
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quay.io/biocontainers/bioconductor-htmg430aprobe |
shpc-registry automated BioContainers addition for bioconductor-htmg430aprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-htmg430b.db |
shpc-registry automated BioContainers addition for bioconductor-htmg430b.db |
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GITHUB
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quay.io/biocontainers/bioconductor-htmg430bcdf |
shpc-registry automated BioContainers addition for bioconductor-htmg430bcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-htmg430bprobe |
shpc-registry automated BioContainers addition for bioconductor-htmg430bprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-htmg430pm.db |
shpc-registry automated BioContainers addition for bioconductor-htmg430pm.db |
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GITHUB
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quay.io/biocontainers/bioconductor-htmg430pmcdf |
shpc-registry automated BioContainers addition for bioconductor-htmg430pmcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-htmg430pmprobe |
shpc-registry automated BioContainers addition for bioconductor-htmg430pmprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-htqpcr |
shpc-registry automated BioContainers addition for bioconductor-htqpcr |
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GITHUB
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quay.io/biocontainers/bioconductor-htrat230pm.db |
shpc-registry automated BioContainers addition for bioconductor-htrat230pm.db |
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GITHUB
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quay.io/biocontainers/bioconductor-htrat230pmcdf |
shpc-registry automated BioContainers addition for bioconductor-htrat230pmcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-htrat230pmprobe |
shpc-registry automated BioContainers addition for bioconductor-htrat230pmprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-htratfocus.db |
shpc-registry automated BioContainers addition for bioconductor-htratfocus.db |
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GITHUB
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quay.io/biocontainers/bioconductor-htratfocuscdf |
shpc-registry automated BioContainers addition for bioconductor-htratfocuscdf |
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GITHUB
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quay.io/biocontainers/bioconductor-htratfocusprobe |
shpc-registry automated BioContainers addition for bioconductor-htratfocusprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-htsanalyzer |
shpc-registry automated BioContainers addition for bioconductor-htsanalyzer |
gio-launch-desktop, c89, c99 |
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GITHUB
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quay.io/biocontainers/bioconductor-htseqgenie |
shpc-registry automated BioContainers addition for bioconductor-htseqgenie |
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GITHUB
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quay.io/biocontainers/bioconductor-htseqtools |
shpc-registry automated BioContainers addition for bioconductor-htseqtools |
gio-launch-desktop, c89, c99 |
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GITHUB
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quay.io/biocontainers/bioconductor-htsfilter |
shpc-registry automated BioContainers addition for bioconductor-htsfilter |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksuba.db |
shpc-registry automated BioContainers addition for bioconductor-hu35ksuba.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksubacdf |
shpc-registry automated BioContainers addition for bioconductor-hu35ksubacdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksubaprobe |
shpc-registry automated BioContainers addition for bioconductor-hu35ksubaprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksubb.db |
shpc-registry automated BioContainers addition for bioconductor-hu35ksubb.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksubbcdf |
shpc-registry automated BioContainers addition for bioconductor-hu35ksubbcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksubbprobe |
shpc-registry automated BioContainers addition for bioconductor-hu35ksubbprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksubc.db |
shpc-registry automated BioContainers addition for bioconductor-hu35ksubc.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksubccdf |
shpc-registry automated BioContainers addition for bioconductor-hu35ksubccdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksubcprobe |
shpc-registry automated BioContainers addition for bioconductor-hu35ksubcprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksubd.db |
shpc-registry automated BioContainers addition for bioconductor-hu35ksubd.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksubdcdf |
shpc-registry automated BioContainers addition for bioconductor-hu35ksubdcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hu35ksubdprobe |
shpc-registry automated BioContainers addition for bioconductor-hu35ksubdprobe |
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GITHUB
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quay.io/biocontainers/bioconductor-hu6800.db |
shpc-registry automated BioContainers addition for bioconductor-hu6800.db |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hu6800cdf |
shpc-registry automated BioContainers addition for bioconductor-hu6800cdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hu6800probe |
shpc-registry automated BioContainers addition for bioconductor-hu6800probe |
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GITHUB
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quay.io/biocontainers/bioconductor-hu6800subacdf |
shpc-registry automated BioContainers addition for bioconductor-hu6800subacdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hu6800subbcdf |
shpc-registry automated BioContainers addition for bioconductor-hu6800subbcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hu6800subccdf |
shpc-registry automated BioContainers addition for bioconductor-hu6800subccdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hu6800subdcdf |
shpc-registry automated BioContainers addition for bioconductor-hu6800subdcdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hubpub |
shpc-registry automated BioContainers addition for bioconductor-hubpub |
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GITHUB
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quay.io/biocontainers/bioconductor-huex.1.0.st.v2frmavecs |
shpc-registry automated BioContainers addition for bioconductor-huex.1.0.st.v2frmavecs |
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GITHUB
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quay.io/biocontainers/bioconductor-huex10stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-huex10stprobeset.db |
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GITHUB
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quay.io/biocontainers/bioconductor-huex10sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-huex10sttranscriptcluster.db |
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GITHUB
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quay.io/biocontainers/bioconductor-huexexonprobesetlocation |
shpc-registry automated BioContainers addition for bioconductor-huexexonprobesetlocation |
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GITHUB
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quay.io/biocontainers/bioconductor-huexexonprobesetlocationhg18 |
shpc-registry automated BioContainers addition for bioconductor-huexexonprobesetlocationhg18 |
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GITHUB
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quay.io/biocontainers/bioconductor-huexexonprobesetlocationhg19 |
shpc-registry automated BioContainers addition for bioconductor-huexexonprobesetlocationhg19 |
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GITHUB
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quay.io/biocontainers/bioconductor-hugene.1.0.st.v1frmavecs |
shpc-registry automated BioContainers addition for bioconductor-hugene.1.0.st.v1frmavecs |
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GITHUB
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quay.io/biocontainers/bioconductor-hugene10stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-hugene10stprobeset.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hugene10sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-hugene10sttranscriptcluster.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hugene10stv1cdf |
shpc-registry automated BioContainers addition for bioconductor-hugene10stv1cdf |
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GITHUB
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quay.io/biocontainers/bioconductor-hugene10stv1probe |
shpc-registry automated BioContainers addition for bioconductor-hugene10stv1probe |
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GITHUB
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quay.io/biocontainers/bioconductor-hugene11stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-hugene11stprobeset.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hugene11sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-hugene11sttranscriptcluster.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hugene20stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-hugene20stprobeset.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hugene20sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-hugene20sttranscriptcluster.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hugene21stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-hugene21stprobeset.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hugene21sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-hugene21sttranscriptcluster.db |
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GITHUB
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quay.io/biocontainers/bioconductor-human.db0 |
shpc-registry automated BioContainers addition for bioconductor-human.db0 |
gio-launch-desktop, c89, c99 |
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GITHUB
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quay.io/biocontainers/bioconductor-human1mduov3bcrlmm |
shpc-registry automated BioContainers addition for bioconductor-human1mduov3bcrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-human1mv1ccrlmm |
shpc-registry automated BioContainers addition for bioconductor-human1mv1ccrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-human370quadv3ccrlmm |
shpc-registry automated BioContainers addition for bioconductor-human370quadv3ccrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-human370v1ccrlmm |
shpc-registry automated BioContainers addition for bioconductor-human370v1ccrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-human550v3bcrlmm |
shpc-registry automated BioContainers addition for bioconductor-human550v3bcrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-human610quadv1bcrlmm |
shpc-registry automated BioContainers addition for bioconductor-human610quadv1bcrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-human650v3acrlmm |
shpc-registry automated BioContainers addition for bioconductor-human650v3acrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-human660quadv1acrlmm |
shpc-registry automated BioContainers addition for bioconductor-human660quadv1acrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-humanaffydata |
shpc-registry automated BioContainers addition for bioconductor-humanaffydata |
wget, c89, c99 |
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GITHUB
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quay.io/biocontainers/bioconductor-humanchrloc |
shpc-registry automated BioContainers addition for bioconductor-humanchrloc |
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GITHUB
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quay.io/biocontainers/bioconductor-humancytosnp12v2p1hcrlmm |
shpc-registry automated BioContainers addition for bioconductor-humancytosnp12v2p1hcrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-humanomni1quadv1bcrlmm |
shpc-registry automated BioContainers addition for bioconductor-humanomni1quadv1bcrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-humanomni25quadv1bcrlmm |
shpc-registry automated BioContainers addition for bioconductor-humanomni25quadv1bcrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-humanomni5quadv1bcrlmm |
shpc-registry automated BioContainers addition for bioconductor-humanomni5quadv1bcrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-humanomniexpress12v1bcrlmm |
shpc-registry automated BioContainers addition for bioconductor-humanomniexpress12v1bcrlmm |
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GITHUB
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quay.io/biocontainers/bioconductor-humanstemcell |
shpc-registry automated BioContainers addition for bioconductor-humanstemcell |
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GITHUB
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quay.io/biocontainers/bioconductor-humantranscriptomecompendium |
shpc-registry automated BioContainers addition for bioconductor-humantranscriptomecompendium |
x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/bioconductor-hummingbird |
shpc-registry automated BioContainers addition for bioconductor-hummingbird |
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GITHUB
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quay.io/biocontainers/bioconductor-huo22.db |
shpc-registry automated BioContainers addition for bioconductor-huo22.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hwgcod.db |
shpc-registry automated BioContainers addition for bioconductor-hwgcod.db |
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GITHUB
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quay.io/biocontainers/bioconductor-hybridmtest |
shpc-registry automated BioContainers addition for bioconductor-hybridmtest |
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GITHUB
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quay.io/biocontainers/bioconductor-hyper |
shpc-registry automated BioContainers addition for bioconductor-hyper |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
|
quay.io/biocontainers/bioconductor-hyperdraw |
shpc-registry automated BioContainers addition for bioconductor-hyperdraw |
diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts |
|
GITHUB
|
quay.io/biocontainers/bioconductor-hypergraph |
shpc-registry automated BioContainers addition for bioconductor-hypergraph |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-iaseq |
shpc-registry automated BioContainers addition for bioconductor-iaseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-iasva |
shpc-registry automated BioContainers addition for bioconductor-iasva |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ibbig |
shpc-registry automated BioContainers addition for bioconductor-ibbig |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ibh |
shpc-registry automated BioContainers addition for bioconductor-ibh |
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GITHUB
|
quay.io/biocontainers/bioconductor-ibmq |
shpc-registry automated BioContainers addition for bioconductor-ibmq |
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GITHUB
|
quay.io/biocontainers/bioconductor-icare |
shpc-registry automated BioContainers addition for bioconductor-icare |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-icens |
shpc-registry automated BioContainers addition for bioconductor-icens |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-icetea |
shpc-registry automated BioContainers addition for bioconductor-icetea |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-icheck |
shpc-registry automated BioContainers addition for bioconductor-icheck |
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GITHUB
|
quay.io/biocontainers/bioconductor-ichip |
shpc-registry automated BioContainers addition for bioconductor-ichip |
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GITHUB
|
quay.io/biocontainers/bioconductor-iclusterplus |
shpc-registry automated BioContainers addition for bioconductor-iclusterplus |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-icnv |
shpc-registry automated BioContainers addition for bioconductor-icnv |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-icobra |
shpc-registry automated BioContainers addition for bioconductor-icobra |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ideal |
shpc-registry automated BioContainers addition for bioconductor-ideal |
pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ideoviz |
shpc-registry automated BioContainers addition for bioconductor-ideoviz |
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GITHUB
|
quay.io/biocontainers/bioconductor-idiogram |
shpc-registry automated BioContainers addition for bioconductor-idiogram |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-idmappinganalysis |
shpc-registry automated BioContainers addition for bioconductor-idmappinganalysis |
extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/bioconductor-idmappingretrieval |
shpc-registry automated BioContainers addition for bioconductor-idmappingretrieval |
extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/bioconductor-idpr |
shpc-registry automated BioContainers addition for bioconductor-idpr |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-idr2d |
shpc-registry automated BioContainers addition for bioconductor-idr2d |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ifaa |
singularity registry hpc automated addition for bioconductor-ifaa |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-igc |
shpc-registry automated BioContainers addition for bioconductor-igc |
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GITHUB
|
quay.io/biocontainers/bioconductor-iggeneusage |
shpc-registry automated BioContainers addition for bioconductor-iggeneusage |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-igvr |
shpc-registry automated BioContainers addition for bioconductor-igvr |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ihw |
shpc-registry automated BioContainers addition for bioconductor-ihw |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ihwpaper |
shpc-registry automated BioContainers addition for bioconductor-ihwpaper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illumina450probevariants.db |
shpc-registry automated BioContainers addition for bioconductor-illumina450probevariants.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminadatatestfiles |
shpc-registry automated BioContainers addition for bioconductor-illuminadatatestfiles |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminahumanmethylation27k.db |
shpc-registry automated BioContainers addition for bioconductor-illuminahumanmethylation27k.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminahumanmethylation450kprobe |
shpc-registry automated BioContainers addition for bioconductor-illuminahumanmethylation450kprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminahumanv1.db |
shpc-registry automated BioContainers addition for bioconductor-illuminahumanv1.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminahumanv2.db |
shpc-registry automated BioContainers addition for bioconductor-illuminahumanv2.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminahumanv2beadid.db |
shpc-registry automated BioContainers addition for bioconductor-illuminahumanv2beadid.db |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-illuminahumanv3.db |
shpc-registry automated BioContainers addition for bioconductor-illuminahumanv3.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminahumanv4.db |
shpc-registry automated BioContainers addition for bioconductor-illuminahumanv4.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminahumanwgdaslv3.db |
shpc-registry automated BioContainers addition for bioconductor-illuminahumanwgdaslv3.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminahumanwgdaslv4.db |
shpc-registry automated BioContainers addition for bioconductor-illuminahumanwgdaslv4.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminaio |
shpc-registry automated BioContainers addition for bioconductor-illuminaio |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminamousev1.db |
shpc-registry automated BioContainers addition for bioconductor-illuminamousev1.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminamousev1p1.db |
shpc-registry automated BioContainers addition for bioconductor-illuminamousev1p1.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminamousev2.db |
shpc-registry automated BioContainers addition for bioconductor-illuminamousev2.db |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-illuminaratv1.db |
shpc-registry automated BioContainers addition for bioconductor-illuminaratv1.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-iloreg |
shpc-registry automated BioContainers addition for bioconductor-iloreg |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-imagehts |
shpc-registry automated BioContainers addition for bioconductor-imagehts |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-imas |
shpc-registry automated BioContainers addition for bioconductor-imas |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-imcdatasets |
shpc-registry automated BioContainers addition for bioconductor-imcdatasets |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach, applygeo |
|
GITHUB
|
quay.io/biocontainers/bioconductor-imcrtools |
shpc-registry automated BioContainers addition for bioconductor-imcrtools |
testepsg, gdal_create, pdfsig, pg_standby, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach |
|
GITHUB
|
quay.io/biocontainers/bioconductor-imetagene |
shpc-registry automated BioContainers addition for bioconductor-imetagene |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-imman |
shpc-registry automated BioContainers addition for bioconductor-imman |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-immunespacer |
shpc-registry automated BioContainers addition for bioconductor-immunespacer |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-immunoclust |
shpc-registry automated BioContainers addition for bioconductor-immunoclust |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-immunotation |
shpc-registry automated BioContainers addition for bioconductor-immunotation |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-impcdata |
shpc-registry automated BioContainers addition for bioconductor-impcdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-impulsede |
shpc-registry automated BioContainers addition for bioconductor-impulsede |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-impulsede2 |
shpc-registry automated BioContainers addition for bioconductor-impulsede2 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-impute |
shpc-registry automated BioContainers addition for bioconductor-impute |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-indac.db |
shpc-registry automated BioContainers addition for bioconductor-indac.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-indeed |
shpc-registry automated BioContainers addition for bioconductor-indeed |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-inetgrate |
singularity registry hpc automated addition for bioconductor-inetgrate |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-infercnv |
shpc-registry automated BioContainers addition for bioconductor-infercnv |
jags, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-infinityflow |
shpc-registry automated BioContainers addition for bioconductor-infinityflow |
xgboost |
|
GITHUB
|
quay.io/biocontainers/bioconductor-informeasure |
shpc-registry automated BioContainers addition for bioconductor-informeasure |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-inpas |
shpc-registry automated BioContainers addition for bioconductor-inpas |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-inpower |
shpc-registry automated BioContainers addition for bioconductor-inpower |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-inspect |
shpc-registry automated BioContainers addition for bioconductor-inspect |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-intact |
singularity registry hpc automated addition for bioconductor-intact |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-intad |
shpc-registry automated BioContainers addition for bioconductor-intad |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-intansv |
shpc-registry automated BioContainers addition for bioconductor-intansv |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-interaccircos |
shpc-registry automated BioContainers addition for bioconductor-interaccircos |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-interactionset |
shpc-registry automated BioContainers addition for bioconductor-interactionset |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-interactivecomplexheatmap |
shpc-registry automated BioContainers addition for bioconductor-interactivecomplexheatmap |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-interactivedisplay |
shpc-registry automated BioContainers addition for bioconductor-interactivedisplay |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-interactivedisplaybase |
shpc-registry automated BioContainers addition for bioconductor-interactivedisplaybase |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-intercellar |
shpc-registry automated BioContainers addition for bioconductor-intercellar |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-interest |
shpc-registry automated BioContainers addition for bioconductor-interest |
my_print_defaults, mysql_config, perror, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-interminer |
shpc-registry automated BioContainers addition for bioconductor-interminer |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-intomics |
singularity registry hpc automated addition for bioconductor-intomics |
git2, hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, glpsol, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-intramirexplorer |
shpc-registry automated BioContainers addition for bioconductor-intramirexplorer |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-inversion |
shpc-registry automated BioContainers addition for bioconductor-inversion |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ioniser |
shpc-registry automated BioContainers addition for bioconductor-ioniser |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-iontreedata |
shpc-registry automated BioContainers addition for bioconductor-iontreedata |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ipac |
shpc-registry automated BioContainers addition for bioconductor-ipac |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ipath |
shpc-registry automated BioContainers addition for bioconductor-ipath |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ipddb |
shpc-registry automated BioContainers addition for bioconductor-ipddb |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ipo |
shpc-registry automated BioContainers addition for bioconductor-ipo |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ippd |
shpc-registry automated BioContainers addition for bioconductor-ippd |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-iranges |
shpc-registry automated BioContainers addition for bioconductor-iranges |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-irisfgm |
shpc-registry automated BioContainers addition for bioconductor-irisfgm |
geosop, geos-config, glpsol, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-isanalytics |
shpc-registry automated BioContainers addition for bioconductor-isanalytics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-isee |
shpc-registry automated BioContainers addition for bioconductor-isee |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-iseede |
singularity registry hpc automated addition for bioconductor-iseede |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-iseehex |
singularity registry hpc automated addition for bioconductor-iseehex |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-iseehub |
singularity registry hpc automated addition for bioconductor-iseehub |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-iseeindex |
singularity registry hpc automated addition for bioconductor-iseeindex |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-iseepathways |
singularity registry hpc automated addition for bioconductor-iseepathways |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-iseeu |
shpc-registry automated BioContainers addition for bioconductor-iseeu |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-iseq |
shpc-registry automated BioContainers addition for bioconductor-iseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-islet |
singularity registry hpc automated addition for bioconductor-islet |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-isobar |
shpc-registry automated BioContainers addition for bioconductor-isobar |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-isobayes |
singularity registry hpc automated addition for bioconductor-isobayes |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-isocorrector |
shpc-registry automated BioContainers addition for bioconductor-isocorrector |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-isocorrectorgui |
shpc-registry automated BioContainers addition for bioconductor-isocorrectorgui |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-isoformswitchanalyzer |
shpc-registry automated BioContainers addition for bioconductor-isoformswitchanalyzer |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-isogenegui |
shpc-registry automated BioContainers addition for bioconductor-isogenegui |
jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/bioconductor-isolde |
shpc-registry automated BioContainers addition for bioconductor-isolde |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-isomirs |
shpc-registry automated BioContainers addition for bioconductor-isomirs |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-italics |
shpc-registry automated BioContainers addition for bioconductor-italics |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-italicsdata |
shpc-registry automated BioContainers addition for bioconductor-italicsdata |
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GITHUB
|
quay.io/biocontainers/bioconductor-iterativebma |
shpc-registry automated BioContainers addition for bioconductor-iterativebma |
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GITHUB
|
quay.io/biocontainers/bioconductor-iterativebmasurv |
shpc-registry automated BioContainers addition for bioconductor-iterativebmasurv |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-iterclust |
shpc-registry automated BioContainers addition for bioconductor-iterclust |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-iteremoval |
shpc-registry automated BioContainers addition for bioconductor-iteremoval |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ivas |
shpc-registry automated BioContainers addition for bioconductor-ivas |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ivygapse |
shpc-registry automated BioContainers addition for bioconductor-ivygapse |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-iwtomics |
shpc-registry automated BioContainers addition for bioconductor-iwtomics |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-iyer517 |
shpc-registry automated BioContainers addition for bioconductor-iyer517 |
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GITHUB
|
quay.io/biocontainers/bioconductor-jaspar2014 |
shpc-registry automated BioContainers addition for bioconductor-jaspar2014 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-jaspar2016 |
shpc-registry automated BioContainers addition for bioconductor-jaspar2016 |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-jaspar2018 |
shpc-registry automated BioContainers addition for bioconductor-jaspar2018 |
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GITHUB
|
quay.io/biocontainers/bioconductor-jaspar2020 |
shpc-registry automated BioContainers addition for bioconductor-jaspar2020 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-jaspar2022 |
singularity registry hpc automated addition for bioconductor-jaspar2022 |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-jaspar2024 |
singularity registry hpc automated addition for bioconductor-jaspar2024 |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
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quay.io/biocontainers/bioconductor-jazaerimetadata.db |
shpc-registry automated BioContainers addition for bioconductor-jazaerimetadata.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-jctseqdata |
shpc-registry automated BioContainers addition for bioconductor-jctseqdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-jmosaics |
shpc-registry automated BioContainers addition for bioconductor-jmosaics |
perl5.22.0, c2ph, pstruct, pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, podselect |
|
GITHUB
|
quay.io/biocontainers/bioconductor-joda |
shpc-registry automated BioContainers addition for bioconductor-joda |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-junctionseq |
shpc-registry automated BioContainers addition for bioconductor-junctionseq |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-karyoploter |
shpc-registry automated BioContainers addition for bioconductor-karyoploter |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-katdetectr |
singularity registry hpc automated addition for bioconductor-katdetectr |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-kboost |
shpc-registry automated BioContainers addition for bioconductor-kboost |
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GITHUB
|
quay.io/biocontainers/bioconductor-kcsmart |
shpc-registry automated BioContainers addition for bioconductor-kcsmart |
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GITHUB
|
quay.io/biocontainers/bioconductor-kebabs |
shpc-registry automated BioContainers addition for bioconductor-kebabs |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-kegg.db |
shpc-registry automated BioContainers addition for bioconductor-kegg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-keggandmetacoredzpathwaysgeo |
shpc-registry automated BioContainers addition for bioconductor-keggandmetacoredzpathwaysgeo |
x86_64-conda-linux-gnu-gfortran.bin, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-keggdzpathwaysgeo |
shpc-registry automated BioContainers addition for bioconductor-keggdzpathwaysgeo |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-kegggraph |
shpc-registry automated BioContainers addition for bioconductor-kegggraph |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-kegglincs |
shpc-registry automated BioContainers addition for bioconductor-kegglincs |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-keggorthology |
shpc-registry automated BioContainers addition for bioconductor-keggorthology |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-keggprofile |
shpc-registry automated BioContainers addition for bioconductor-keggprofile |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-keggrest |
shpc-registry automated BioContainers addition for bioconductor-keggrest |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-kidpack |
shpc-registry automated BioContainers addition for bioconductor-kidpack |
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GITHUB
|
quay.io/biocontainers/bioconductor-kimod |
shpc-registry automated BioContainers addition for bioconductor-kimod |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-kinswingr |
shpc-registry automated BioContainers addition for bioconductor-kinswingr |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-kissde |
shpc-registry automated BioContainers addition for bioconductor-kissde |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-knowseq |
shpc-registry automated BioContainers addition for bioconductor-knowseq |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-kodata |
shpc-registry automated BioContainers addition for bioconductor-kodata |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lace |
shpc-registry automated BioContainers addition for bioconductor-lace |
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GITHUB
|
quay.io/biocontainers/bioconductor-lapmix |
shpc-registry automated BioContainers addition for bioconductor-lapmix |
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GITHUB
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quay.io/biocontainers/bioconductor-lapointe.db |
shpc-registry automated BioContainers addition for bioconductor-lapointe.db |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-lbe |
shpc-registry automated BioContainers addition for bioconductor-lbe |
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GITHUB
|
quay.io/biocontainers/bioconductor-ldblock |
shpc-registry automated BioContainers addition for bioconductor-ldblock |
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GITHUB
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quay.io/biocontainers/bioconductor-lea |
shpc-registry automated BioContainers addition for bioconductor-lea |
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GITHUB
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quay.io/biocontainers/bioconductor-ledpred |
shpc-registry automated BioContainers addition for bioconductor-ledpred |
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GITHUB
|
quay.io/biocontainers/bioconductor-leebamviews |
shpc-registry automated BioContainers addition for bioconductor-leebamviews |
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GITHUB
|
quay.io/biocontainers/bioconductor-lefser |
shpc-registry automated BioContainers addition for bioconductor-lefser |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-lemur |
singularity registry hpc automated addition for bioconductor-lemur |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-les |
shpc-registry automated BioContainers addition for bioconductor-les |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-leukemiaseset |
shpc-registry automated BioContainers addition for bioconductor-leukemiaseset |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-levi |
shpc-registry automated BioContainers addition for bioconductor-levi |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lfa |
shpc-registry automated BioContainers addition for bioconductor-lfa |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-liebermanaidenhic2009 |
shpc-registry automated BioContainers addition for bioconductor-liebermanaidenhic2009 |
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GITHUB
|
quay.io/biocontainers/bioconductor-limma |
shpc-registry automated BioContainers addition for bioconductor-limma |
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GITHUB
|
quay.io/biocontainers/bioconductor-limmagui |
shpc-registry automated BioContainers addition for bioconductor-limmagui |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-linc |
shpc-registry automated BioContainers addition for bioconductor-linc |
udunits2, wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lineagepulse |
shpc-registry automated BioContainers addition for bioconductor-lineagepulse |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lineagespot |
singularity registry hpc automated addition for bioconductor-lineagespot |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-linkhd |
shpc-registry automated BioContainers addition for bioconductor-linkhd |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-linnorm |
shpc-registry automated BioContainers addition for bioconductor-linnorm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lintind |
singularity registry hpc automated addition for bioconductor-lintind |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lionessr |
shpc-registry automated BioContainers addition for bioconductor-lionessr |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-lipidr |
shpc-registry automated BioContainers addition for bioconductor-lipidr |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-liquidassociation |
shpc-registry automated BioContainers addition for bioconductor-liquidassociation |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lisaclust |
shpc-registry automated BioContainers addition for bioconductor-lisaclust |
testepsg, gdal_create, pdfsig, pg_standby, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach |
|
GITHUB
|
quay.io/biocontainers/bioconductor-listeretalbsseq |
shpc-registry automated BioContainers addition for bioconductor-listeretalbsseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lmdme |
shpc-registry automated BioContainers addition for bioconductor-lmdme |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lmgene |
shpc-registry automated BioContainers addition for bioconductor-lmgene |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lobstahs |
shpc-registry automated BioContainers addition for bioconductor-lobstahs |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-loci2path |
shpc-registry automated BioContainers addition for bioconductor-loci2path |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-logicfs |
shpc-registry automated BioContainers addition for bioconductor-logicfs |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-logitt |
shpc-registry automated BioContainers addition for bioconductor-logitt |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-logolas |
shpc-registry automated BioContainers addition for bioconductor-logolas |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lol |
shpc-registry automated BioContainers addition for bioconductor-lol |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lola |
shpc-registry automated BioContainers addition for bioconductor-lola |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-loomexperiment |
shpc-registry automated BioContainers addition for bioconductor-loomexperiment |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lowmaca |
shpc-registry automated BioContainers addition for bioconductor-lowmaca |
clustalo |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lowmacaannotation |
shpc-registry automated BioContainers addition for bioconductor-lowmacaannotation |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lpe |
shpc-registry automated BioContainers addition for bioconductor-lpe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lpeadj |
shpc-registry automated BioContainers addition for bioconductor-lpeadj |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lpnet |
shpc-registry automated BioContainers addition for bioconductor-lpnet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lpsymphony |
shpc-registry automated BioContainers addition for bioconductor-lpsymphony |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.ath.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.ath.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.bta.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.bta.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.cel.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.cel.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.dme.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.dme.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.dre.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.dre.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.gga.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.gga.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.hsa.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.hsa.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.mmu.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.mmu.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.pab.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.pab.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.rno.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.rno.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.ssc.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.ssc.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbase.xtr.eg.db |
shpc-registry automated BioContainers addition for bioconductor-lrbase.xtr.eg.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrbasedbi |
shpc-registry automated BioContainers addition for bioconductor-lrbasedbi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lrcell |
shpc-registry automated BioContainers addition for bioconductor-lrcell |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-lrcelltypemarkers |
shpc-registry automated BioContainers addition for bioconductor-lrcelltypemarkers |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lumi |
shpc-registry automated BioContainers addition for bioconductor-lumi |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-lumibarnes |
shpc-registry automated BioContainers addition for bioconductor-lumibarnes |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lumihumanall.db |
shpc-registry automated BioContainers addition for bioconductor-lumihumanall.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lumihumanidmapping |
shpc-registry automated BioContainers addition for bioconductor-lumihumanidmapping |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lumimouseall.db |
shpc-registry automated BioContainers addition for bioconductor-lumimouseall.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lumimouseidmapping |
shpc-registry automated BioContainers addition for bioconductor-lumimouseidmapping |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lumiratall.db |
shpc-registry automated BioContainers addition for bioconductor-lumiratall.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lumiratidmapping |
shpc-registry automated BioContainers addition for bioconductor-lumiratidmapping |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-lungcanceracvssccgeo |
shpc-registry automated BioContainers addition for bioconductor-lungcanceracvssccgeo |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lungcancerlines |
shpc-registry automated BioContainers addition for bioconductor-lungcancerlines |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lungexpression |
shpc-registry automated BioContainers addition for bioconductor-lungexpression |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lvsmirna |
shpc-registry automated BioContainers addition for bioconductor-lvsmirna |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lydata |
shpc-registry automated BioContainers addition for bioconductor-lydata |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-lymphoseq |
shpc-registry automated BioContainers addition for bioconductor-lymphoseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-lymphoseqdb |
shpc-registry automated BioContainers addition for bioconductor-lymphoseqdb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-m10kcod.db |
shpc-registry automated BioContainers addition for bioconductor-m10kcod.db |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-m20kcod.db |
shpc-registry automated BioContainers addition for bioconductor-m20kcod.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-m3c |
shpc-registry automated BioContainers addition for bioconductor-m3c |
f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, gio-launch-desktop |
|
GITHUB
|
quay.io/biocontainers/bioconductor-m3d |
shpc-registry automated BioContainers addition for bioconductor-m3d |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-m3dexampledata |
shpc-registry automated BioContainers addition for bioconductor-m3dexampledata |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-m3drop |
shpc-registry automated BioContainers addition for bioconductor-m3drop |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-m6aboost |
shpc-registry automated BioContainers addition for bioconductor-m6aboost |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-maanova |
shpc-registry automated BioContainers addition for bioconductor-maanova |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-maaslin2 |
shpc-registry automated BioContainers addition for bioconductor-maaslin2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-macarron |
singularity registry hpc automated addition for bioconductor-macarron |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-macat |
shpc-registry automated BioContainers addition for bioconductor-macat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-macorrplot |
shpc-registry automated BioContainers addition for bioconductor-macorrplot |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-macpet |
shpc-registry automated BioContainers addition for bioconductor-macpet |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-macrophage |
shpc-registry automated BioContainers addition for bioconductor-macrophage |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-macsdata |
shpc-registry automated BioContainers addition for bioconductor-macsdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-macsquantifyr |
shpc-registry automated BioContainers addition for bioconductor-macsquantifyr |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-macsr |
shpc-registry automated BioContainers addition for bioconductor-macsr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-made4 |
shpc-registry automated BioContainers addition for bioconductor-made4 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-madseq |
shpc-registry automated BioContainers addition for bioconductor-madseq |
jags, wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.1kgenomes.phase1.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.1kgenomes.phase1.grch38 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.1kgenomes.phase1.hs37d5 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.1kgenomes.phase1.hs37d5 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.1kgenomes.phase3.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.1kgenomes.phase3.grch38 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.1kgenomes.phase3.hs37d5 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.1kgenomes.phase3.hs37d5 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.esp6500si.v2.ssa137.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.esp6500si.v2.ssa137.grch38 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.esp6500si.v2.ssa137.hs37d5 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.esp6500si.v2.ssa137.hs37d5 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.exac.r1.0.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.exac.r1.0.grch38 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.exac.r1.0.hs37d5 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.exac.r1.0.hs37d5 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.exac.r1.0.nontcga.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.exac.r1.0.nontcga.grch38 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.exac.r1.0.nontcga.hs37d5 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.exac.r1.0.nontcga.hs37d5 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.gnomad.r2.0.1.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomad.r2.0.1.grch38 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.gnomad.r2.0.1.hs37d5 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomad.r2.0.1.hs37d5 |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.gnomad.r2.1.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomad.r2.1.grch38 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.gnomad.r2.1.hs37d5 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomad.r2.1.hs37d5 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.gnomad.r3.0.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomad.r3.0.grch38 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.gnomadex.r2.0.1.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomadex.r2.0.1.grch38 |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.gnomadex.r2.0.1.hs37d5 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomadex.r2.0.1.hs37d5 |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.gnomadex.r2.1.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomadex.r2.1.grch38 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.gnomadex.r2.1.hs37d5 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.gnomadex.r2.1.hs37d5 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.topmed.freeze5.hg19 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.topmed.freeze5.hg19 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafdb.topmed.freeze5.hg38 |
shpc-registry automated BioContainers addition for bioconductor-mafdb.topmed.freeze5.hg38 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafh5.gnomad.r3.0.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafh5.gnomad.r3.0.grch38 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafh5.gnomad.v3.1.1.grch38 |
shpc-registry automated BioContainers addition for bioconductor-mafh5.gnomad.v3.1.1.grch38 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mafh5.gnomad.v3.1.2.grch38 |
singularity registry hpc automated addition for bioconductor-mafh5.gnomad.v3.1.2.grch38 |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-maftools |
shpc-registry automated BioContainers addition for bioconductor-maftools |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-magar |
shpc-registry automated BioContainers addition for bioconductor-magar |
2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mageckflute |
shpc-registry automated BioContainers addition for bioconductor-mageckflute |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-magpie |
singularity registry hpc automated addition for bioconductor-magpie |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-magrene |
singularity registry hpc automated addition for bioconductor-magrene |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mai |
shpc-registry automated BioContainers addition for bioconductor-mai |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-maigespack |
shpc-registry automated BioContainers addition for bioconductor-maigespack |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mait |
shpc-registry automated BioContainers addition for bioconductor-mait |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach, applygeo |
|
GITHUB
|
quay.io/biocontainers/bioconductor-maizecdf |
shpc-registry automated BioContainers addition for bioconductor-maizecdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-maizeprobe |
shpc-registry automated BioContainers addition for bioconductor-maizeprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-makecdfenv |
shpc-registry automated BioContainers addition for bioconductor-makecdfenv |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-malaria.db0 |
shpc-registry automated BioContainers addition for bioconductor-malaria.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mammaprintdata |
shpc-registry automated BioContainers addition for bioconductor-mammaprintdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-manor |
shpc-registry automated BioContainers addition for bioconductor-manor |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-manta |
shpc-registry automated BioContainers addition for bioconductor-manta |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mantelcorr |
shpc-registry automated BioContainers addition for bioconductor-mantelcorr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mapkl |
shpc-registry automated BioContainers addition for bioconductor-mapkl |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mapkldata |
shpc-registry automated BioContainers addition for bioconductor-mapkldata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mapredictdsc |
shpc-registry automated BioContainers addition for bioconductor-mapredictdsc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mapscape |
shpc-registry automated BioContainers addition for bioconductor-mapscape |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-maqcexpression4plex |
shpc-registry automated BioContainers addition for bioconductor-maqcexpression4plex |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-maqcsubset |
shpc-registry automated BioContainers addition for bioconductor-maqcsubset |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-maqcsubsetafx |
shpc-registry automated BioContainers addition for bioconductor-maqcsubsetafx |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-maqcsubsetilm |
shpc-registry automated BioContainers addition for bioconductor-maqcsubsetilm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-marinerdata |
singularity registry hpc automated addition for bioconductor-marinerdata |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-marr |
shpc-registry automated BioContainers addition for bioconductor-marr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-marray |
shpc-registry automated BioContainers addition for bioconductor-marray |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-martini |
shpc-registry automated BioContainers addition for bioconductor-martini |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-maser |
shpc-registry automated BioContainers addition for bioconductor-maser |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-masigpro |
shpc-registry automated BioContainers addition for bioconductor-masigpro |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-maskbad |
shpc-registry automated BioContainers addition for bioconductor-maskbad |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-massarray |
shpc-registry automated BioContainers addition for bioconductor-massarray |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-massir |
shpc-registry automated BioContainers addition for bioconductor-massir |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-massspecwavelet |
shpc-registry automated BioContainers addition for bioconductor-massspecwavelet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mast |
shpc-registry automated BioContainers addition for bioconductor-mast |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mastr |
singularity registry hpc automated addition for bioconductor-mastr |
geosop, geos-config, hb-info, f2py3.11, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-matchbox |
shpc-registry automated BioContainers addition for bioconductor-matchbox |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-matrixgenerics |
shpc-registry automated BioContainers addition for bioconductor-matrixgenerics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-matrixqcvis |
shpc-registry automated BioContainers addition for bioconductor-matrixqcvis |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-matrixrider |
shpc-registry automated BioContainers addition for bioconductor-matrixrider |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-matter |
shpc-registry automated BioContainers addition for bioconductor-matter |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-maxcontrastprojection |
shpc-registry automated BioContainers addition for bioconductor-maxcontrastprojection |
mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, mpifort, mpic++, mpicc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mbamethyl |
shpc-registry automated BioContainers addition for bioconductor-mbamethyl |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mbased |
shpc-registry automated BioContainers addition for bioconductor-mbased |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mbcb |
shpc-registry automated BioContainers addition for bioconductor-mbcb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mbecs |
singularity registry hpc automated addition for bioconductor-mbecs |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, pandoc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mbkmeans |
shpc-registry automated BioContainers addition for bioconductor-mbkmeans |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mbomic |
singularity registry hpc automated addition for bioconductor-mbomic |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mbpcr |
shpc-registry automated BioContainers addition for bioconductor-mbpcr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mbqn |
shpc-registry automated BioContainers addition for bioconductor-mbqn |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mbqtl |
singularity registry hpc automated addition for bioconductor-mbqtl |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mbttest |
shpc-registry automated BioContainers addition for bioconductor-mbttest |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mcagui |
shpc-registry automated BioContainers addition for bioconductor-mcagui |
gtk-builder-convert, gtk-demo, gtk-query-immodules-2.0, gtk-update-icon-cache, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mcbiclust |
shpc-registry automated BioContainers addition for bioconductor-mcbiclust |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mcrestimate |
shpc-registry automated BioContainers addition for bioconductor-mcrestimate |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mcsea |
shpc-registry automated BioContainers addition for bioconductor-mcsea |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mcseadata |
shpc-registry automated BioContainers addition for bioconductor-mcseadata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mcsurvdata |
shpc-registry automated BioContainers addition for bioconductor-mcsurvdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mdgsa |
shpc-registry automated BioContainers addition for bioconductor-mdgsa |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mdp |
shpc-registry automated BioContainers addition for bioconductor-mdp |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mdqc |
shpc-registry automated BioContainers addition for bioconductor-mdqc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mdts |
shpc-registry automated BioContainers addition for bioconductor-mdts |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-meal |
shpc-registry automated BioContainers addition for bioconductor-meal |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-measurementerror.cor |
shpc-registry automated BioContainers addition for bioconductor-measurementerror.cor |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-meat |
shpc-registry automated BioContainers addition for bioconductor-meat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-meb |
shpc-registry automated BioContainers addition for bioconductor-meb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-medicagocdf |
shpc-registry automated BioContainers addition for bioconductor-medicagocdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-medicagoprobe |
shpc-registry automated BioContainers addition for bioconductor-medicagoprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-medips |
shpc-registry automated BioContainers addition for bioconductor-medips |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-medipsdata |
shpc-registry automated BioContainers addition for bioconductor-medipsdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-medme |
shpc-registry automated BioContainers addition for bioconductor-medme |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-meebodata |
shpc-registry automated BioContainers addition for bioconductor-meebodata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-megadepth |
shpc-registry automated BioContainers addition for bioconductor-megadepth |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-meigor |
shpc-registry automated BioContainers addition for bioconductor-meigor |
diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts |
|
GITHUB
|
quay.io/biocontainers/bioconductor-melissa |
shpc-registry automated BioContainers addition for bioconductor-melissa |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-memes |
shpc-registry automated BioContainers addition for bioconductor-memes |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-merfishdata |
singularity registry hpc automated addition for bioconductor-merfishdata |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mergemaid |
shpc-registry automated BioContainers addition for bioconductor-mergemaid |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mergeomics |
shpc-registry automated BioContainers addition for bioconductor-mergeomics |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-meshdbi |
shpc-registry automated BioContainers addition for bioconductor-meshdbi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-meshes |
shpc-registry automated BioContainers addition for bioconductor-meshes |
udunits2, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-meshr |
shpc-registry automated BioContainers addition for bioconductor-meshr |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-meshsim |
shpc-registry automated BioContainers addition for bioconductor-meshsim |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-meskit |
shpc-registry automated BioContainers addition for bioconductor-meskit |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-messina |
shpc-registry automated BioContainers addition for bioconductor-messina |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metaarray |
shpc-registry automated BioContainers addition for bioconductor-metaarray |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metab |
shpc-registry automated BioContainers addition for bioconductor-metab |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metabcombiner |
shpc-registry automated BioContainers addition for bioconductor-metabcombiner |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metabinr |
singularity registry hpc automated addition for bioconductor-metabinr |
jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap, jps |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metaboannotation |
singularity registry hpc automated addition for bioconductor-metaboannotation |
installBiocDataPackage.sh, tomlq, xq, yq, rsvg-convert, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metabocoreutils |
shpc-registry automated BioContainers addition for bioconductor-metabocoreutils |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metaboliteidmapping |
shpc-registry automated BioContainers addition for bioconductor-metaboliteidmapping |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metabolomicsworkbenchr |
shpc-registry automated BioContainers addition for bioconductor-metabolomicsworkbenchr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metabomxtr |
shpc-registry automated BioContainers addition for bioconductor-metabomxtr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metabosignal |
shpc-registry automated BioContainers addition for bioconductor-metabosignal |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metacca |
shpc-registry automated BioContainers addition for bioconductor-metacca |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metacyto |
shpc-registry automated BioContainers addition for bioconductor-metacyto |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metagene |
shpc-registry automated BioContainers addition for bioconductor-metagene |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metagene2 |
shpc-registry automated BioContainers addition for bioconductor-metagene2 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metagenomefeatures |
shpc-registry automated BioContainers addition for bioconductor-metagenomefeatures |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metagenomeseq |
shpc-registry automated BioContainers addition for bioconductor-metagenomeseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metagxbreast |
shpc-registry automated BioContainers addition for bioconductor-metagxbreast |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metagxovarian |
shpc-registry automated BioContainers addition for bioconductor-metagxovarian |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metagxpancreas |
shpc-registry automated BioContainers addition for bioconductor-metagxpancreas |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metahdep |
shpc-registry automated BioContainers addition for bioconductor-metahdep |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metams |
shpc-registry automated BioContainers addition for bioconductor-metams |
pngcp, nc-config, nccopy, ncdump, ncgen, ncgen3, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metamsdata |
shpc-registry automated BioContainers addition for bioconductor-metamsdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metaneighbor |
shpc-registry automated BioContainers addition for bioconductor-metaneighbor |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metaphor |
singularity registry hpc automated addition for bioconductor-metaphor |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, jpackage, curve_keygen, cups-config, ippeveprinter, ipptool, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, jfr, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metapod |
shpc-registry automated BioContainers addition for bioconductor-metapod |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metapone |
shpc-registry automated BioContainers addition for bioconductor-metapone |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metascope |
singularity registry hpc automated addition for bioconductor-metascope |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metaseq |
shpc-registry automated BioContainers addition for bioconductor-metaseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metaseqr |
shpc-registry automated BioContainers addition for bioconductor-metaseqr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metaseqr2 |
shpc-registry automated BioContainers addition for bioconductor-metaseqr2 |
pandoc-server, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metavizr |
shpc-registry automated BioContainers addition for bioconductor-metavizr |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metavolcanor |
shpc-registry automated BioContainers addition for bioconductor-metavolcanor |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-metcirc |
shpc-registry automated BioContainers addition for bioconductor-metcirc |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methcp |
shpc-registry automated BioContainers addition for bioconductor-methcp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methimpute |
shpc-registry automated BioContainers addition for bioconductor-methimpute |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methinheritsim |
shpc-registry automated BioContainers addition for bioconductor-methinheritsim |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methped |
shpc-registry automated BioContainers addition for bioconductor-methped |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methreg |
shpc-registry automated BioContainers addition for bioconductor-methreg |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methrix |
shpc-registry automated BioContainers addition for bioconductor-methrix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methtargetedngs |
shpc-registry automated BioContainers addition for bioconductor-methtargetedngs |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methvisual |
shpc-registry automated BioContainers addition for bioconductor-methvisual |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methyanalysis |
shpc-registry automated BioContainers addition for bioconductor-methyanalysis |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylaid |
shpc-registry automated BioContainers addition for bioconductor-methylaid |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylaiddata |
shpc-registry automated BioContainers addition for bioconductor-methylaiddata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylcc |
shpc-registry automated BioContainers addition for bioconductor-methylcc |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylclock |
shpc-registry automated BioContainers addition for bioconductor-methylclock |
git2_cli, pandoc-server, pandoc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylclockdata |
shpc-registry automated BioContainers addition for bioconductor-methylclockdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylgsa |
shpc-registry automated BioContainers addition for bioconductor-methylgsa |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylinheritance |
shpc-registry automated BioContainers addition for bioconductor-methylinheritance |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylkit |
shpc-registry automated BioContainers addition for bioconductor-methylkit |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylmix |
shpc-registry automated BioContainers addition for bioconductor-methylmix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylmnm |
shpc-registry automated BioContainers addition for bioconductor-methylmnm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylpipe |
shpc-registry automated BioContainers addition for bioconductor-methylpipe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylscaper |
shpc-registry automated BioContainers addition for bioconductor-methylscaper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylseekr |
shpc-registry automated BioContainers addition for bioconductor-methylseekr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylseqdata |
shpc-registry automated BioContainers addition for bioconductor-methylseqdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylsig |
shpc-registry automated BioContainers addition for bioconductor-methylsig |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methylumi |
shpc-registry automated BioContainers addition for bioconductor-methylumi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-methyvim |
shpc-registry automated BioContainers addition for bioconductor-methyvim |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-methyvimdata |
shpc-registry automated BioContainers addition for bioconductor-methyvimdata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metid |
shpc-registry automated BioContainers addition for bioconductor-metid |
rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-metnet |
shpc-registry automated BioContainers addition for bioconductor-metnet |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mfa |
shpc-registry automated BioContainers addition for bioconductor-mfa |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mfuzz |
shpc-registry automated BioContainers addition for bioconductor-mfuzz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgfm |
shpc-registry automated BioContainers addition for bioconductor-mgfm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgfr |
shpc-registry automated BioContainers addition for bioconductor-mgfr |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgsa |
shpc-registry automated BioContainers addition for bioconductor-mgsa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74a.db |
shpc-registry automated BioContainers addition for bioconductor-mgu74a.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74acdf |
shpc-registry automated BioContainers addition for bioconductor-mgu74acdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74aprobe |
shpc-registry automated BioContainers addition for bioconductor-mgu74aprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74av2.db |
shpc-registry automated BioContainers addition for bioconductor-mgu74av2.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74av2cdf |
shpc-registry automated BioContainers addition for bioconductor-mgu74av2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74av2probe |
shpc-registry automated BioContainers addition for bioconductor-mgu74av2probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74b.db |
shpc-registry automated BioContainers addition for bioconductor-mgu74b.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74bcdf |
shpc-registry automated BioContainers addition for bioconductor-mgu74bcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74bprobe |
shpc-registry automated BioContainers addition for bioconductor-mgu74bprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74bv2.db |
shpc-registry automated BioContainers addition for bioconductor-mgu74bv2.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74bv2cdf |
shpc-registry automated BioContainers addition for bioconductor-mgu74bv2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74bv2probe |
shpc-registry automated BioContainers addition for bioconductor-mgu74bv2probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74c.db |
shpc-registry automated BioContainers addition for bioconductor-mgu74c.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74ccdf |
shpc-registry automated BioContainers addition for bioconductor-mgu74ccdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74cprobe |
shpc-registry automated BioContainers addition for bioconductor-mgu74cprobe |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74cv2.db |
shpc-registry automated BioContainers addition for bioconductor-mgu74cv2.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74cv2cdf |
shpc-registry automated BioContainers addition for bioconductor-mgu74cv2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgu74cv2probe |
shpc-registry automated BioContainers addition for bioconductor-mgu74cv2probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mguatlas5k.db |
shpc-registry automated BioContainers addition for bioconductor-mguatlas5k.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgug4104a.db |
shpc-registry automated BioContainers addition for bioconductor-mgug4104a.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgug4120a.db |
shpc-registry automated BioContainers addition for bioconductor-mgug4120a.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgug4121a.db |
shpc-registry automated BioContainers addition for bioconductor-mgug4121a.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mgug4122a.db |
shpc-registry automated BioContainers addition for bioconductor-mgug4122a.db |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mi16cod.db |
shpc-registry automated BioContainers addition for bioconductor-mi16cod.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mia |
shpc-registry automated BioContainers addition for bioconductor-mia |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-miasim |
shpc-registry automated BioContainers addition for bioconductor-miasim |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-miaviz |
shpc-registry automated BioContainers addition for bioconductor-miaviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-michip |
shpc-registry automated BioContainers addition for bioconductor-michip |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-microbiome |
shpc-registry automated BioContainers addition for bioconductor-microbiome |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-microbiomebenchmarkdata |
singularity registry hpc automated addition for bioconductor-microbiomebenchmarkdata |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-microbiomedasim |
shpc-registry automated BioContainers addition for bioconductor-microbiomedasim |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-microbiomedatasets |
shpc-registry automated BioContainers addition for bioconductor-microbiomedatasets |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-microbiomeexplorer |
shpc-registry automated BioContainers addition for bioconductor-microbiomeexplorer |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-microbiomemarker |
shpc-registry automated BioContainers addition for bioconductor-microbiomemarker |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-microbiomeprofiler |
shpc-registry automated BioContainers addition for bioconductor-microbiomeprofiler |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-microbiotaprocess |
shpc-registry automated BioContainers addition for bioconductor-microbiotaprocess |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-microrna |
shpc-registry automated BioContainers addition for bioconductor-microrna |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-micrornaome |
shpc-registry automated BioContainers addition for bioconductor-micrornaome |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-microstasis |
singularity registry hpc automated addition for bioconductor-microstasis |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-midashla |
shpc-registry automated BioContainers addition for bioconductor-midashla |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-migsa |
shpc-registry automated BioContainers addition for bioconductor-migsa |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-migsadata |
shpc-registry automated BioContainers addition for bioconductor-migsadata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-milor |
shpc-registry automated BioContainers addition for bioconductor-milor |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mimager |
shpc-registry automated BioContainers addition for bioconductor-mimager |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mimosa |
shpc-registry automated BioContainers addition for bioconductor-mimosa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mina |
shpc-registry automated BioContainers addition for bioconductor-mina |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mineica |
shpc-registry automated BioContainers addition for bioconductor-mineica |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-minet |
shpc-registry automated BioContainers addition for bioconductor-minet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-minfi |
shpc-registry automated BioContainers addition for bioconductor-minfi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-minfidata |
shpc-registry automated BioContainers addition for bioconductor-minfidata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-minfidataepic |
shpc-registry automated BioContainers addition for bioconductor-minfidataepic |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-minimumdistance |
shpc-registry automated BioContainers addition for bioconductor-minimumdistance |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-minionsummarydata |
shpc-registry automated BioContainers addition for bioconductor-minionsummarydata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mipp |
shpc-registry automated BioContainers addition for bioconductor-mipp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-miqc |
shpc-registry automated BioContainers addition for bioconductor-miqc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mira |
shpc-registry automated BioContainers addition for bioconductor-mira |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirage |
shpc-registry automated BioContainers addition for bioconductor-mirage |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirbase.db |
shpc-registry automated BioContainers addition for bioconductor-mirbase.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirbaseconverter |
shpc-registry automated BioContainers addition for bioconductor-mirbaseconverter |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirbaseversions.db |
shpc-registry automated BioContainers addition for bioconductor-mirbaseversions.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mircomp |
shpc-registry automated BioContainers addition for bioconductor-mircomp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mircompdata |
shpc-registry automated BioContainers addition for bioconductor-mircompdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirintegrator |
shpc-registry automated BioContainers addition for bioconductor-mirintegrator |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirlab |
shpc-registry automated BioContainers addition for bioconductor-mirlab |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirmine |
shpc-registry automated BioContainers addition for bioconductor-mirmine |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirna102xgaincdf |
shpc-registry automated BioContainers addition for bioconductor-mirna102xgaincdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirna10cdf |
shpc-registry automated BioContainers addition for bioconductor-mirna10cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirna10probe |
shpc-registry automated BioContainers addition for bioconductor-mirna10probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirna20cdf |
shpc-registry automated BioContainers addition for bioconductor-mirna20cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirnameconverter |
shpc-registry automated BioContainers addition for bioconductor-mirnameconverter |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirnapath |
shpc-registry automated BioContainers addition for bioconductor-mirnapath |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirnatap.db |
shpc-registry automated BioContainers addition for bioconductor-mirnatap.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirnatap |
shpc-registry automated BioContainers addition for bioconductor-mirnatap |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirnatarget |
shpc-registry automated BioContainers addition for bioconductor-mirnatarget |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirsm |
shpc-registry automated BioContainers addition for bioconductor-mirsm |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, f2py3.9 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirsponge |
shpc-registry automated BioContainers addition for bioconductor-mirsponge |
udunits2, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirsponger |
shpc-registry automated BioContainers addition for bioconductor-mirsponger |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirsynergy |
shpc-registry automated BioContainers addition for bioconductor-mirsynergy |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mirtarrnaseq |
shpc-registry automated BioContainers addition for bioconductor-mirtarrnaseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-missmethyl |
shpc-registry automated BioContainers addition for bioconductor-missmethyl |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-missrows |
shpc-registry automated BioContainers addition for bioconductor-missrows |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mistyr |
shpc-registry automated BioContainers addition for bioconductor-mistyr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mitch |
shpc-registry automated BioContainers addition for bioconductor-mitch |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mitoclone2 |
shpc-registry automated BioContainers addition for bioconductor-mitoclone2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mitoode |
shpc-registry automated BioContainers addition for bioconductor-mitoode |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mitoodedata |
shpc-registry automated BioContainers addition for bioconductor-mitoodedata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mixomics |
shpc-registry automated BioContainers addition for bioconductor-mixomics |
f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, gio-launch-desktop |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mlinterfaces |
shpc-registry automated BioContainers addition for bioconductor-mlinterfaces |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mlm4omics |
shpc-registry automated BioContainers addition for bioconductor-mlm4omics |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mlp |
shpc-registry automated BioContainers addition for bioconductor-mlp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mlseq |
shpc-registry automated BioContainers addition for bioconductor-mlseq |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mm24kresogen.db |
shpc-registry automated BioContainers addition for bioconductor-mm24kresogen.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mmagilentdesign026655.db |
shpc-registry automated BioContainers addition for bioconductor-mmagilentdesign026655.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mmappr2 |
shpc-registry automated BioContainers addition for bioconductor-mmappr2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mmappr2data |
shpc-registry automated BioContainers addition for bioconductor-mmappr2data |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mmdiff |
shpc-registry automated BioContainers addition for bioconductor-mmdiff |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mmdiff2 |
shpc-registry automated BioContainers addition for bioconductor-mmdiff2 |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mmdiffbamsubset |
shpc-registry automated BioContainers addition for bioconductor-mmdiffbamsubset |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mmnet |
shpc-registry automated BioContainers addition for bioconductor-mmnet |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mmpalatemirna |
shpc-registry automated BioContainers addition for bioconductor-mmpalatemirna |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mmuphin |
shpc-registry automated BioContainers addition for bioconductor-mmuphin |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mnem |
shpc-registry automated BioContainers addition for bioconductor-mnem |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-moanin |
shpc-registry automated BioContainers addition for bioconductor-moanin |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mobilitytransformr |
singularity registry hpc automated addition for bioconductor-mobilitytransformr |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff, hdp, hrepack, jpeg2hdf, paltohdf |
|
GITHUB
|
quay.io/biocontainers/bioconductor-moda |
shpc-registry automated BioContainers addition for bioconductor-moda |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-modcon |
shpc-registry automated BioContainers addition for bioconductor-modcon |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/bioconductor-modstrings |
shpc-registry automated BioContainers addition for bioconductor-modstrings |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-moe430a.db |
shpc-registry automated BioContainers addition for bioconductor-moe430a.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-moe430acdf |
shpc-registry automated BioContainers addition for bioconductor-moe430acdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-moe430aprobe |
shpc-registry automated BioContainers addition for bioconductor-moe430aprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-moe430b.db |
shpc-registry automated BioContainers addition for bioconductor-moe430b.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-moe430bcdf |
shpc-registry automated BioContainers addition for bioconductor-moe430bcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-moe430bprobe |
shpc-registry automated BioContainers addition for bioconductor-moe430bprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-moex10stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-moex10stprobeset.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-moex10sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-moex10sttranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-moexexonprobesetlocation |
shpc-registry automated BioContainers addition for bioconductor-moexexonprobesetlocation |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mofa |
shpc-registry automated BioContainers addition for bioconductor-mofa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mofa2 |
shpc-registry automated BioContainers addition for bioconductor-mofa2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mofadata |
shpc-registry automated BioContainers addition for bioconductor-mofadata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogamun |
shpc-registry automated BioContainers addition for bioconductor-mogamun |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogene.1.0.st.v1frmavecs |
shpc-registry automated BioContainers addition for bioconductor-mogene.1.0.st.v1frmavecs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogene10stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-mogene10stprobeset.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogene10sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-mogene10sttranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogene10stv1cdf |
shpc-registry automated BioContainers addition for bioconductor-mogene10stv1cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogene10stv1probe |
shpc-registry automated BioContainers addition for bioconductor-mogene10stv1probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogene11stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-mogene11stprobeset.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogene11sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-mogene11sttranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogene20stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-mogene20stprobeset.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogene20sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-mogene20sttranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogene21stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-mogene21stprobeset.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogene21sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-mogene21sttranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mogsa |
shpc-registry automated BioContainers addition for bioconductor-mogsa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-moleculeexperiment |
singularity registry hpc automated addition for bioconductor-moleculeexperiment |
sozip, h5delete, pg_amcheck, bsdcat, bsdcpio, bsdtar, pdfsig, gdal_create, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, gdal-config, gdal_contour, gdal_grid, gdal_rasterize |
|
GITHUB
|
quay.io/biocontainers/bioconductor-moma |
shpc-registry automated BioContainers addition for bioconductor-moma |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-monalisa |
shpc-registry automated BioContainers addition for bioconductor-monalisa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-monocle |
shpc-registry automated BioContainers addition for bioconductor-monocle |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-moonlight2r |
singularity registry hpc automated addition for bioconductor-moonlight2r |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-moonlightr |
shpc-registry automated BioContainers addition for bioconductor-moonlightr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mops |
shpc-registry automated BioContainers addition for bioconductor-mops |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mosaics |
shpc-registry automated BioContainers addition for bioconductor-mosaics |
perl5.22.0, c2ph, pstruct, pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, podselect |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mosaicsexample |
shpc-registry automated BioContainers addition for bioconductor-mosaicsexample |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mosbi |
shpc-registry automated BioContainers addition for bioconductor-mosbi |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mosim |
shpc-registry automated BioContainers addition for bioconductor-mosim |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-motif2site |
singularity registry hpc automated addition for bioconductor-motif2site |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-motifbreakr |
shpc-registry automated BioContainers addition for bioconductor-motifbreakr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-motifcounter |
shpc-registry automated BioContainers addition for bioconductor-motifcounter |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-motifdb |
shpc-registry automated BioContainers addition for bioconductor-motifdb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-motifmatchr |
shpc-registry automated BioContainers addition for bioconductor-motifmatchr |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-motifrg |
shpc-registry automated BioContainers addition for bioconductor-motifrg |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-motifstack |
shpc-registry automated BioContainers addition for bioconductor-motifstack |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-motiv |
shpc-registry automated BioContainers addition for bioconductor-motiv |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mouse.db0 |
shpc-registry automated BioContainers addition for bioconductor-mouse.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mouse4302.db |
shpc-registry automated BioContainers addition for bioconductor-mouse4302.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mouse4302barcodevecs |
shpc-registry automated BioContainers addition for bioconductor-mouse4302barcodevecs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mouse4302cdf |
shpc-registry automated BioContainers addition for bioconductor-mouse4302cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mouse4302frmavecs |
shpc-registry automated BioContainers addition for bioconductor-mouse4302frmavecs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mouse4302probe |
shpc-registry automated BioContainers addition for bioconductor-mouse4302probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mouse430a2.db |
shpc-registry automated BioContainers addition for bioconductor-mouse430a2.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mouse430a2cdf |
shpc-registry automated BioContainers addition for bioconductor-mouse430a2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mouse430a2frmavecs |
shpc-registry automated BioContainers addition for bioconductor-mouse430a2frmavecs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mouse430a2probe |
shpc-registry automated BioContainers addition for bioconductor-mouse430a2probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mousechrloc |
shpc-registry automated BioContainers addition for bioconductor-mousechrloc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mousefm |
shpc-registry automated BioContainers addition for bioconductor-mousefm |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mousegastrulationdata |
shpc-registry automated BioContainers addition for bioconductor-mousegastrulationdata |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mousethymusageing |
shpc-registry automated BioContainers addition for bioconductor-mousethymusageing |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mpedbarray.db |
shpc-registry automated BioContainers addition for bioconductor-mpedbarray.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mpfe |
shpc-registry automated BioContainers addition for bioconductor-mpfe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mpo.db |
singularity registry hpc automated addition for bioconductor-mpo.db |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mpra |
shpc-registry automated BioContainers addition for bioconductor-mpra |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mpranalyze |
shpc-registry automated BioContainers addition for bioconductor-mpranalyze |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mqmetrics |
shpc-registry automated BioContainers addition for bioconductor-mqmetrics |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mqtl.nmr |
shpc-registry automated BioContainers addition for bioconductor-mqtl.nmr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msa |
shpc-registry automated BioContainers addition for bioconductor-msa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msa2dist |
singularity registry hpc automated addition for bioconductor-msa2dist |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msbackendmassbank |
shpc-registry automated BioContainers addition for bioconductor-msbackendmassbank |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msbackendmgf |
shpc-registry automated BioContainers addition for bioconductor-msbackendmgf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msbackendmsp |
singularity registry hpc automated addition for bioconductor-msbackendmsp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msbackendrawfilereader |
shpc-registry automated BioContainers addition for bioconductor-msbackendrawfilereader |
aprofutil, csc, csi, illinkanalyzer, mono-hang-watchdog, vbc, mono-package-runtime, sgen-grep-binprot, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msbackendsql |
singularity registry hpc automated addition for bioconductor-msbackendsql |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mscoreutils |
shpc-registry automated BioContainers addition for bioconductor-mscoreutils |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msd16s |
shpc-registry automated BioContainers addition for bioconductor-msd16s |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msdata |
shpc-registry automated BioContainers addition for bioconductor-msdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msdatahub |
singularity registry hpc automated addition for bioconductor-msdatahub |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mseadbi |
shpc-registry automated BioContainers addition for bioconductor-mseadbi |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msexperiment |
singularity registry hpc automated addition for bioconductor-msexperiment |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msfeatures |
shpc-registry automated BioContainers addition for bioconductor-msfeatures |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msgbsr |
shpc-registry automated BioContainers addition for bioconductor-msgbsr |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msgfgui |
shpc-registry automated BioContainers addition for bioconductor-msgfgui |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msgfplus |
shpc-registry automated BioContainers addition for bioconductor-msgfplus |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msigdb |
shpc-registry automated BioContainers addition for bioconductor-msigdb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msimpute |
shpc-registry automated BioContainers addition for bioconductor-msimpute |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mslp |
singularity registry hpc automated addition for bioconductor-mslp |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msmb |
shpc-registry automated BioContainers addition for bioconductor-msmb |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msmseda |
shpc-registry automated BioContainers addition for bioconductor-msmseda |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msmstests |
shpc-registry automated BioContainers addition for bioconductor-msmstests |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msnbase |
shpc-registry automated BioContainers addition for bioconductor-msnbase |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msnid |
shpc-registry automated BioContainers addition for bioconductor-msnid |
pandoc-server, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msprep |
shpc-registry automated BioContainers addition for bioconductor-msprep |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mspurity |
shpc-registry automated BioContainers addition for bioconductor-mspurity |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mspuritydata |
shpc-registry automated BioContainers addition for bioconductor-mspuritydata |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msqc1 |
shpc-registry automated BioContainers addition for bioconductor-msqc1 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msqrob2 |
shpc-registry automated BioContainers addition for bioconductor-msqrob2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msquality |
singularity registry hpc automated addition for bioconductor-msquality |
hb-info, tjbench, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstats |
shpc-registry automated BioContainers addition for bioconductor-msstats |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatsbig |
singularity registry hpc automated addition for bioconductor-msstatsbig |
protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatsbiodata |
shpc-registry automated BioContainers addition for bioconductor-msstatsbiodata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatsconvert |
shpc-registry automated BioContainers addition for bioconductor-msstatsconvert |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatslip |
shpc-registry automated BioContainers addition for bioconductor-msstatslip |
pandoc-server, pandoc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatslobd |
shpc-registry automated BioContainers addition for bioconductor-msstatslobd |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatsptm |
shpc-registry automated BioContainers addition for bioconductor-msstatsptm |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatsqc |
shpc-registry automated BioContainers addition for bioconductor-msstatsqc |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatsqcgui |
shpc-registry automated BioContainers addition for bioconductor-msstatsqcgui |
pandoc-citeproc, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatssamplesize |
shpc-registry automated BioContainers addition for bioconductor-msstatssamplesize |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatsshiny |
singularity registry hpc automated addition for bioconductor-msstatsshiny |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatstmt |
shpc-registry automated BioContainers addition for bioconductor-msstatstmt |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-msstatstmtptm |
shpc-registry automated BioContainers addition for bioconductor-msstatstmtptm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mta10probeset.db |
shpc-registry automated BioContainers addition for bioconductor-mta10probeset.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mta10transcriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-mta10transcriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mtbls2 |
shpc-registry automated BioContainers addition for bioconductor-mtbls2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mtseeker |
shpc-registry automated BioContainers addition for bioconductor-mtseeker |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mtseekerdata |
shpc-registry automated BioContainers addition for bioconductor-mtseekerdata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu11ksuba.db |
shpc-registry automated BioContainers addition for bioconductor-mu11ksuba.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu11ksubacdf |
shpc-registry automated BioContainers addition for bioconductor-mu11ksubacdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu11ksubaprobe |
shpc-registry automated BioContainers addition for bioconductor-mu11ksubaprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu11ksubb.db |
shpc-registry automated BioContainers addition for bioconductor-mu11ksubb.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu11ksubbcdf |
shpc-registry automated BioContainers addition for bioconductor-mu11ksubbcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu11ksubbprobe |
shpc-registry automated BioContainers addition for bioconductor-mu11ksubbprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu15v1.db |
shpc-registry automated BioContainers addition for bioconductor-mu15v1.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu19ksuba.db |
shpc-registry automated BioContainers addition for bioconductor-mu19ksuba.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu19ksubacdf |
shpc-registry automated BioContainers addition for bioconductor-mu19ksubacdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu19ksubb.db |
shpc-registry automated BioContainers addition for bioconductor-mu19ksubb.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu19ksubbcdf |
shpc-registry automated BioContainers addition for bioconductor-mu19ksubbcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu19ksubc.db |
shpc-registry automated BioContainers addition for bioconductor-mu19ksubc.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu19ksubccdf |
shpc-registry automated BioContainers addition for bioconductor-mu19ksubccdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu22v3.db |
shpc-registry automated BioContainers addition for bioconductor-mu22v3.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu6500subacdf |
shpc-registry automated BioContainers addition for bioconductor-mu6500subacdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu6500subbcdf |
shpc-registry automated BioContainers addition for bioconductor-mu6500subbcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu6500subccdf |
shpc-registry automated BioContainers addition for bioconductor-mu6500subccdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mu6500subdcdf |
shpc-registry automated BioContainers addition for bioconductor-mu6500subdcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mudata |
singularity registry hpc automated addition for bioconductor-mudata |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mugaexampledata |
shpc-registry automated BioContainers addition for bioconductor-mugaexampledata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mulcom |
shpc-registry automated BioContainers addition for bioconductor-mulcom |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mulder2012 |
shpc-registry automated BioContainers addition for bioconductor-mulder2012 |
giffilter, gifsponge, gifecho, gifinto, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/bioconductor-multiassayexperiment |
shpc-registry automated BioContainers addition for bioconductor-multiassayexperiment |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-multibac |
shpc-registry automated BioContainers addition for bioconductor-multibac |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-multiclust |
shpc-registry automated BioContainers addition for bioconductor-multiclust |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-multicrispr |
shpc-registry automated BioContainers addition for bioconductor-multicrispr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-multidataset |
shpc-registry automated BioContainers addition for bioconductor-multidataset |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-multigsea |
shpc-registry automated BioContainers addition for bioconductor-multigsea |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-multihiccompare |
shpc-registry automated BioContainers addition for bioconductor-multihiccompare |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-multimed |
shpc-registry automated BioContainers addition for bioconductor-multimed |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-multimir |
shpc-registry automated BioContainers addition for bioconductor-multimir |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-multimodalexperiment |
singularity registry hpc automated addition for bioconductor-multimodalexperiment |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-multiomicsviz |
shpc-registry automated BioContainers addition for bioconductor-multiomicsviz |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-multiscan |
shpc-registry automated BioContainers addition for bioconductor-multiscan |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-multisight |
shpc-registry automated BioContainers addition for bioconductor-multisight |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-multiwgcna |
singularity registry hpc automated addition for bioconductor-multiwgcna |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-multtest |
shpc-registry automated BioContainers addition for bioconductor-multtest |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mumosa |
shpc-registry automated BioContainers addition for bioconductor-mumosa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mungesumstats |
shpc-registry automated BioContainers addition for bioconductor-mungesumstats |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mus.musculus |
shpc-registry automated BioContainers addition for bioconductor-mus.musculus |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-muscat |
shpc-registry automated BioContainers addition for bioconductor-muscat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-muscdata |
shpc-registry automated BioContainers addition for bioconductor-muscdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-muscle |
shpc-registry automated BioContainers addition for bioconductor-muscle |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-musicatk |
shpc-registry automated BioContainers addition for bioconductor-musicatk |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mutationalpatterns |
shpc-registry automated BioContainers addition for bioconductor-mutationalpatterns |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mvcclass |
shpc-registry automated BioContainers addition for bioconductor-mvcclass |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mvgst |
shpc-registry automated BioContainers addition for bioconductor-mvgst |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mvoutdata |
shpc-registry automated BioContainers addition for bioconductor-mvoutdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mwastools |
shpc-registry automated BioContainers addition for bioconductor-mwastools |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mwgcod.db |
shpc-registry automated BioContainers addition for bioconductor-mwgcod.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mygene |
shpc-registry automated BioContainers addition for bioconductor-mygene |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-myvariant |
shpc-registry automated BioContainers addition for bioconductor-myvariant |
my_print_defaults, mysql_config, perror, wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-mzid |
shpc-registry automated BioContainers addition for bioconductor-mzid |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-mzr |
shpc-registry automated BioContainers addition for bioconductor-mzr |
nc-config, nccopy, ncdump, ncgen, ncgen3, uconv, gif2h5, h52gif, h5c++, h5copy |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nadfinder |
shpc-registry automated BioContainers addition for bioconductor-nadfinder |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nanomethviz |
shpc-registry automated BioContainers addition for bioconductor-nanomethviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nanoporernaseq |
shpc-registry automated BioContainers addition for bioconductor-nanoporernaseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nanostringdiff |
shpc-registry automated BioContainers addition for bioconductor-nanostringdiff |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nanostringnctools |
shpc-registry automated BioContainers addition for bioconductor-nanostringnctools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nanostringqcpro |
shpc-registry automated BioContainers addition for bioconductor-nanostringqcpro |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nanotator |
shpc-registry automated BioContainers addition for bioconductor-nanotator |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nanotube |
shpc-registry automated BioContainers addition for bioconductor-nanotube |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nanotubes |
shpc-registry automated BioContainers addition for bioconductor-nanotubes |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-narrowpeaks |
shpc-registry automated BioContainers addition for bioconductor-narrowpeaks |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nbamseq |
shpc-registry automated BioContainers addition for bioconductor-nbamseq |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nbsplice |
shpc-registry automated BioContainers addition for bioconductor-nbsplice |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ncdfflow |
shpc-registry automated BioContainers addition for bioconductor-ncdfflow |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ncgtw |
shpc-registry automated BioContainers addition for bioconductor-ncgtw |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ncigraph |
shpc-registry automated BioContainers addition for bioconductor-ncigraph |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ncigraphdata |
shpc-registry automated BioContainers addition for bioconductor-ncigraphdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ncrnatools |
shpc-registry automated BioContainers addition for bioconductor-ncrnatools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ndexr |
shpc-registry automated BioContainers addition for bioconductor-ndexr |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nearbynding |
shpc-registry automated BioContainers addition for bioconductor-nearbynding |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nebulosa |
shpc-registry automated BioContainers addition for bioconductor-nebulosa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-neighbornet |
shpc-registry automated BioContainers addition for bioconductor-neighbornet |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nem |
shpc-registry automated BioContainers addition for bioconductor-nem |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nempi |
shpc-registry automated BioContainers addition for bioconductor-nempi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nestlink |
shpc-registry automated BioContainers addition for bioconductor-nestlink |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-netactivity |
singularity registry hpc automated addition for bioconductor-netactivity |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-netactivitydata |
singularity registry hpc automated addition for bioconductor-netactivitydata |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-netbenchmark |
shpc-registry automated BioContainers addition for bioconductor-netbenchmark |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-netbiov |
shpc-registry automated BioContainers addition for bioconductor-netbiov |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-netboost |
shpc-registry automated BioContainers addition for bioconductor-netboost |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-netboxr |
shpc-registry automated BioContainers addition for bioconductor-netboxr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-netdx.examples |
shpc-registry automated BioContainers addition for bioconductor-netdx.examples |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-netdx |
shpc-registry automated BioContainers addition for bioconductor-netdx |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nethet |
shpc-registry automated BioContainers addition for bioconductor-nethet |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-netomics |
shpc-registry automated BioContainers addition for bioconductor-netomics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-netpathminer |
shpc-registry automated BioContainers addition for bioconductor-netpathminer |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-netprior |
shpc-registry automated BioContainers addition for bioconductor-netprior |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-netreg |
shpc-registry automated BioContainers addition for bioconductor-netreg |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-netresponse |
shpc-registry automated BioContainers addition for bioconductor-netresponse |
pandoc-server, glpsol, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-netsam |
shpc-registry automated BioContainers addition for bioconductor-netsam |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-netsmooth |
shpc-registry automated BioContainers addition for bioconductor-netsmooth |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-networkbma |
shpc-registry automated BioContainers addition for bioconductor-networkbma |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-netzoor |
singularity registry hpc automated addition for bioconductor-netzoor |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, Cytoscape, cytoscape.sh, gen_vmoptions.sh, jpackage, curve_keygen, cups-config, ippeveprinter, ipptool, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, jfr, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/bioconductor-neuca |
shpc-registry automated BioContainers addition for bioconductor-neuca |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-neve2006 |
shpc-registry automated BioContainers addition for bioconductor-neve2006 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-newwave |
shpc-registry automated BioContainers addition for bioconductor-newwave |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ngscopy |
shpc-registry automated BioContainers addition for bioconductor-ngscopy |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ngscopydata |
shpc-registry automated BioContainers addition for bioconductor-ngscopydata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ngsreports |
shpc-registry automated BioContainers addition for bioconductor-ngsreports |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nipalsmcia |
singularity registry hpc automated addition for bioconductor-nipalsmcia |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nnnorm |
shpc-registry automated BioContainers addition for bioconductor-nnnorm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nnsvg |
singularity registry hpc automated addition for bioconductor-nnsvg |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-noiseq |
shpc-registry automated BioContainers addition for bioconductor-noiseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nondetects |
shpc-registry automated BioContainers addition for bioconductor-nondetects |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-norce |
shpc-registry automated BioContainers addition for bioconductor-norce |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-normalize450k |
shpc-registry automated BioContainers addition for bioconductor-normalize450k |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-normalyzerde |
shpc-registry automated BioContainers addition for bioconductor-normalyzerde |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-normqpcr |
shpc-registry automated BioContainers addition for bioconductor-normqpcr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-normr |
shpc-registry automated BioContainers addition for bioconductor-normr |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-norway981.db |
shpc-registry automated BioContainers addition for bioconductor-norway981.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nparc |
shpc-registry automated BioContainers addition for bioconductor-nparc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-npgsea |
shpc-registry automated BioContainers addition for bioconductor-npgsea |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ntw |
shpc-registry automated BioContainers addition for bioconductor-ntw |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nucleosim |
shpc-registry automated BioContainers addition for bioconductor-nucleosim |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nucler |
shpc-registry automated BioContainers addition for bioconductor-nucler |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nucpos |
shpc-registry automated BioContainers addition for bioconductor-nucpos |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-nudge |
shpc-registry automated BioContainers addition for bioconductor-nudge |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nugohs1a520180.db |
shpc-registry automated BioContainers addition for bioconductor-nugohs1a520180.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nugohs1a520180cdf |
shpc-registry automated BioContainers addition for bioconductor-nugohs1a520180cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nugohs1a520180probe |
shpc-registry automated BioContainers addition for bioconductor-nugohs1a520180probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nugomm1a520177.db |
shpc-registry automated BioContainers addition for bioconductor-nugomm1a520177.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nugomm1a520177cdf |
shpc-registry automated BioContainers addition for bioconductor-nugomm1a520177cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nugomm1a520177probe |
shpc-registry automated BioContainers addition for bioconductor-nugomm1a520177probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nullranges |
shpc-registry automated BioContainers addition for bioconductor-nullranges |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nullrangesdata |
shpc-registry automated BioContainers addition for bioconductor-nullrangesdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nupop |
shpc-registry automated BioContainers addition for bioconductor-nupop |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nxtirfcore |
shpc-registry automated BioContainers addition for bioconductor-nxtirfcore |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-nxtirfdata |
shpc-registry automated BioContainers addition for bioconductor-nxtirfdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-obmiti |
shpc-registry automated BioContainers addition for bioconductor-obmiti |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-occugene |
shpc-registry automated BioContainers addition for bioconductor-occugene |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ocplus |
shpc-registry automated BioContainers addition for bioconductor-ocplus |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-oct4 |
shpc-registry automated BioContainers addition for bioconductor-oct4 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-octad.db |
singularity registry hpc automated addition for bioconductor-octad.db |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-oder |
shpc-registry automated BioContainers addition for bioconductor-oder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-odseq |
shpc-registry automated BioContainers addition for bioconductor-odseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ogre |
singularity registry hpc automated addition for bioconductor-ogre |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ogsa |
shpc-registry automated BioContainers addition for bioconductor-ogsa |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-oligo |
shpc-registry automated BioContainers addition for bioconductor-oligo |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-oligoclasses |
shpc-registry automated BioContainers addition for bioconductor-oligoclasses |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-oligodata |
shpc-registry automated BioContainers addition for bioconductor-oligodata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-olin |
shpc-registry automated BioContainers addition for bioconductor-olin |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-olingui |
shpc-registry automated BioContainers addition for bioconductor-olingui |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-omada |
singularity registry hpc automated addition for bioconductor-omada |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-omadb |
shpc-registry automated BioContainers addition for bioconductor-omadb |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-omicade4 |
shpc-registry automated BioContainers addition for bioconductor-omicade4 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-omiccircos |
shpc-registry automated BioContainers addition for bioconductor-omiccircos |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-omicplotr |
shpc-registry automated BioContainers addition for bioconductor-omicplotr |
pandoc-citeproc, pandoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-omicrexposome |
shpc-registry automated BioContainers addition for bioconductor-omicrexposome |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-omicslonda |
shpc-registry automated BioContainers addition for bioconductor-omicslonda |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-omicsmarker |
shpc-registry automated BioContainers addition for bioconductor-omicsmarker |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-omicspca |
shpc-registry automated BioContainers addition for bioconductor-omicspca |
pdfattach, pdfdetach, pdffonts, pdfimages, pdfinfo, pdfseparate, pdftocairo, pdftohtml, pdftoppm, pdftops |
|
GITHUB
|
quay.io/biocontainers/bioconductor-omicspcadata |
shpc-registry automated BioContainers addition for bioconductor-omicspcadata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-omicsprint |
shpc-registry automated BioContainers addition for bioconductor-omicsprint |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-omicsviewer |
singularity registry hpc automated addition for bioconductor-omicsviewer |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-omixer |
shpc-registry automated BioContainers addition for bioconductor-omixer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-omnipathr |
shpc-registry automated BioContainers addition for bioconductor-omnipathr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ompbam |
singularity registry hpc automated addition for bioconductor-ompbam |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-onassis |
shpc-registry automated BioContainers addition for bioconductor-onassis |
extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/bioconductor-onassisjavalibs |
shpc-registry automated BioContainers addition for bioconductor-onassisjavalibs |
extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/bioconductor-oncomix |
shpc-registry automated BioContainers addition for bioconductor-oncomix |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-oncoscanr |
singularity registry hpc automated addition for bioconductor-oncoscanr |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-oncoscore |
shpc-registry automated BioContainers addition for bioconductor-oncoscore |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-oncosimulr |
shpc-registry automated BioContainers addition for bioconductor-oncosimulr |
glpsol, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-onesense |
shpc-registry automated BioContainers addition for bioconductor-onesense |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-onlinefdr |
shpc-registry automated BioContainers addition for bioconductor-onlinefdr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ontoproc |
shpc-registry automated BioContainers addition for bioconductor-ontoproc |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ontoprocdata |
shpc-registry automated BioContainers addition for bioconductor-ontoprocdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-opencyto |
shpc-registry automated BioContainers addition for bioconductor-opencyto |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-openprimer |
shpc-registry automated BioContainers addition for bioconductor-openprimer |
mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns, mafft-fftnsi |
|
GITHUB
|
quay.io/biocontainers/bioconductor-openprimerui |
shpc-registry automated BioContainers addition for bioconductor-openprimerui |
mafft-sparsecore.rb, pandoc-citeproc, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns |
|
GITHUB
|
quay.io/biocontainers/bioconductor-openstats |
shpc-registry automated BioContainers addition for bioconductor-openstats |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-operonhumanv3.db |
shpc-registry automated BioContainers addition for bioconductor-operonhumanv3.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-opossom |
shpc-registry automated BioContainers addition for bioconductor-opossom |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-oppar |
shpc-registry automated BioContainers addition for bioconductor-oppar |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-oppti |
shpc-registry automated BioContainers addition for bioconductor-oppti |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-optimalflow |
shpc-registry automated BioContainers addition for bioconductor-optimalflow |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-optimalflowdata |
shpc-registry automated BioContainers addition for bioconductor-optimalflowdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-opweight |
shpc-registry automated BioContainers addition for bioconductor-opweight |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-orderedlist |
shpc-registry automated BioContainers addition for bioconductor-orderedlist |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-orfhunter |
shpc-registry automated BioContainers addition for bioconductor-orfhunter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-orfik |
shpc-registry automated BioContainers addition for bioconductor-orfik |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.ag.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.ag.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.at.tair.db |
shpc-registry automated BioContainers addition for bioconductor-org.at.tair.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.bt.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.bt.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.ce.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.ce.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.cf.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.cf.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.dm.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.dm.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.dr.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.dr.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.eck12.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.eck12.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.ecsakai.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.ecsakai.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.gg.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.gg.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.hs.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.hs.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.mm.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.mm.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.mmu.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.mmu.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.mxanthus.db |
shpc-registry automated BioContainers addition for bioconductor-org.mxanthus.db |
pandoc-server, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.pf.plasmo.db |
shpc-registry automated BioContainers addition for bioconductor-org.pf.plasmo.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.pt.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.pt.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.rn.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.rn.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.sc.sgd.db |
shpc-registry automated BioContainers addition for bioconductor-org.sc.sgd.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.ss.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.ss.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-org.xl.eg.db |
shpc-registry automated BioContainers addition for bioconductor-org.xl.eg.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-organism.dplyr |
shpc-registry automated BioContainers addition for bioconductor-organism.dplyr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-organismdbi |
shpc-registry automated BioContainers addition for bioconductor-organismdbi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-orthogene |
shpc-registry automated BioContainers addition for bioconductor-orthogene |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-orthology.eg.db |
shpc-registry automated BioContainers addition for bioconductor-orthology.eg.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-orthos |
singularity registry hpc automated addition for bioconductor-orthos |
protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-orthosdata |
singularity registry hpc automated addition for bioconductor-orthosdata |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-osat |
shpc-registry automated BioContainers addition for bioconductor-osat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-oscope |
shpc-registry automated BioContainers addition for bioconductor-oscope |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-otubase |
shpc-registry automated BioContainers addition for bioconductor-otubase |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-outlierd |
shpc-registry automated BioContainers addition for bioconductor-outlierd |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-outrider |
shpc-registry automated BioContainers addition for bioconductor-outrider |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-outsplice |
singularity registry hpc automated addition for bioconductor-outsplice |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-oveseg |
shpc-registry automated BioContainers addition for bioconductor-oveseg |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-paa |
shpc-registry automated BioContainers addition for bioconductor-paa |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-packfinder |
shpc-registry automated BioContainers addition for bioconductor-packfinder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-padma |
shpc-registry automated BioContainers addition for bioconductor-padma |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-padog |
shpc-registry automated BioContainers addition for bioconductor-padog |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-paeg1acdf |
shpc-registry automated BioContainers addition for bioconductor-paeg1acdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-paeg1aprobe |
shpc-registry automated BioContainers addition for bioconductor-paeg1aprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pagerank |
shpc-registry automated BioContainers addition for bioconductor-pagerank |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pairadise |
shpc-registry automated BioContainers addition for bioconductor-pairadise |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-paircompviz |
shpc-registry automated BioContainers addition for bioconductor-paircompviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pairedgsea |
singularity registry hpc automated addition for bioconductor-pairedgsea |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pairkat |
shpc-registry automated BioContainers addition for bioconductor-pairkat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pandar |
shpc-registry automated BioContainers addition for bioconductor-pandar |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-panelcn.mops |
shpc-registry automated BioContainers addition for bioconductor-panelcn.mops |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pannbuilder |
shpc-registry automated BioContainers addition for bioconductor-pannbuilder |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-panomir |
singularity registry hpc automated addition for bioconductor-panomir |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-panp |
shpc-registry automated BioContainers addition for bioconductor-panp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-panr |
shpc-registry automated BioContainers addition for bioconductor-panr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-panther.db |
shpc-registry automated BioContainers addition for bioconductor-panther.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-panvizgenerator |
shpc-registry automated BioContainers addition for bioconductor-panvizgenerator |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-papi |
shpc-registry automated BioContainers addition for bioconductor-papi |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-parathyroidse |
shpc-registry automated BioContainers addition for bioconductor-parathyroidse |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pareg |
singularity registry hpc automated addition for bioconductor-pareg |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-parglms |
shpc-registry automated BioContainers addition for bioconductor-parglms |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-parody |
shpc-registry automated BioContainers addition for bioconductor-parody |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-partcnv |
singularity registry hpc automated addition for bioconductor-partcnv |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-partheenmetadata.db |
shpc-registry automated BioContainers addition for bioconductor-partheenmetadata.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pasilla |
shpc-registry automated BioContainers addition for bioconductor-pasilla |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pasillabamsubset |
shpc-registry automated BioContainers addition for bioconductor-pasillabamsubset |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pasillatranscriptexpr |
shpc-registry automated BioContainers addition for bioconductor-pasillatranscriptexpr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-past |
shpc-registry automated BioContainers addition for bioconductor-past |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-path2ppi |
shpc-registry automated BioContainers addition for bioconductor-path2ppi |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pathifier |
shpc-registry automated BioContainers addition for bioconductor-pathifier |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pathnet |
shpc-registry automated BioContainers addition for bioconductor-pathnet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pathnetdata |
shpc-registry automated BioContainers addition for bioconductor-pathnetdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pathostat |
shpc-registry automated BioContainers addition for bioconductor-pathostat |
pandoc-citeproc, pandoc, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pathprint |
shpc-registry automated BioContainers addition for bioconductor-pathprint |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pathprintgeodata |
shpc-registry automated BioContainers addition for bioconductor-pathprintgeodata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pathrender |
shpc-registry automated BioContainers addition for bioconductor-pathrender |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pathvar |
shpc-registry automated BioContainers addition for bioconductor-pathvar |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pathview |
shpc-registry automated BioContainers addition for bioconductor-pathview |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pathwaypca |
shpc-registry automated BioContainers addition for bioconductor-pathwaypca |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pathwaysplice |
shpc-registry automated BioContainers addition for bioconductor-pathwaysplice |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-paxtoolsr |
shpc-registry automated BioContainers addition for bioconductor-paxtoolsr |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pbase |
shpc-registry automated BioContainers addition for bioconductor-pbase |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pbcmc |
shpc-registry automated BioContainers addition for bioconductor-pbcmc |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcaexplorer |
shpc-registry automated BioContainers addition for bioconductor-pcaexplorer |
pandoc-citeproc, pandoc, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcagopromoter.hs.hg19 |
shpc-registry automated BioContainers addition for bioconductor-pcagopromoter.hs.hg19 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcagopromoter |
shpc-registry automated BioContainers addition for bioconductor-pcagopromoter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcagopromoter.mm.mm9 |
shpc-registry automated BioContainers addition for bioconductor-pcagopromoter.mm.mm9 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcagopromoter.rn.rn4 |
shpc-registry automated BioContainers addition for bioconductor-pcagopromoter.rn.rn4 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcamethods |
shpc-registry automated BioContainers addition for bioconductor-pcamethods |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcan |
shpc-registry automated BioContainers addition for bioconductor-pcan |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcatools |
shpc-registry automated BioContainers addition for bioconductor-pcatools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pchicdata |
shpc-registry automated BioContainers addition for bioconductor-pchicdata |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcot2 |
shpc-registry automated BioContainers addition for bioconductor-pcot2 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcpheno |
shpc-registry automated BioContainers addition for bioconductor-pcpheno |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcxn |
shpc-registry automated BioContainers addition for bioconductor-pcxn |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pcxndata |
shpc-registry automated BioContainers addition for bioconductor-pcxndata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pdatk |
shpc-registry automated BioContainers addition for bioconductor-pdatk |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pdinfobuilder |
shpc-registry automated BioContainers addition for bioconductor-pdinfobuilder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-peacoqc |
shpc-registry automated BioContainers addition for bioconductor-peacoqc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-peakpanther |
shpc-registry automated BioContainers addition for bioconductor-peakpanther |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-peca |
shpc-registry automated BioContainers addition for bioconductor-peca |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-peco |
shpc-registry automated BioContainers addition for bioconductor-peco |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pedbarrayv10.db |
shpc-registry automated BioContainers addition for bioconductor-pedbarrayv10.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pedbarrayv9.db |
shpc-registry automated BioContainers addition for bioconductor-pedbarrayv9.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pengls |
shpc-registry automated BioContainers addition for bioconductor-pengls |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pepdat |
shpc-registry automated BioContainers addition for bioconductor-pepdat |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pepsnmr |
shpc-registry automated BioContainers addition for bioconductor-pepsnmr |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pepsnmrdata |
shpc-registry automated BioContainers addition for bioconductor-pepsnmrdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pepstat |
shpc-registry automated BioContainers addition for bioconductor-pepstat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pepxmltab |
shpc-registry automated BioContainers addition for bioconductor-pepxmltab |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-perfect |
shpc-registry automated BioContainers addition for bioconductor-perfect |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-periodicdna |
shpc-registry automated BioContainers addition for bioconductor-periodicdna |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-perturbatr |
shpc-registry automated BioContainers addition for bioconductor-perturbatr |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pfam.db |
shpc-registry automated BioContainers addition for bioconductor-pfam.db |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pfamanalyzer |
singularity registry hpc automated addition for bioconductor-pfamanalyzer |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pfp |
shpc-registry automated BioContainers addition for bioconductor-pfp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pga |
shpc-registry automated BioContainers addition for bioconductor-pga |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pgca |
shpc-registry automated BioContainers addition for bioconductor-pgca |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pgsea |
shpc-registry automated BioContainers addition for bioconductor-pgsea |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phantasus |
shpc-registry automated BioContainers addition for bioconductor-phantasus |
protoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phantasuslite |
singularity registry hpc automated addition for bioconductor-phantasuslite |
pcre2posix_test, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pharmacogx |
shpc-registry automated BioContainers addition for bioconductor-pharmacogx |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-phastcons30way.ucsc.hg38 |
shpc-registry automated BioContainers addition for bioconductor-phastcons30way.ucsc.hg38 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-phastcons35way.ucsc.mm39 |
singularity registry hpc automated addition for bioconductor-phastcons35way.ucsc.mm39 |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phastcons7way.ucsc.hg38 |
shpc-registry automated BioContainers addition for bioconductor-phastcons7way.ucsc.hg38 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-phemd |
shpc-registry automated BioContainers addition for bioconductor-phemd |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phenodist |
shpc-registry automated BioContainers addition for bioconductor-phenodist |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phenogeneranker |
shpc-registry automated BioContainers addition for bioconductor-phenogeneranker |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-phenomis |
singularity registry hpc automated addition for bioconductor-phenomis |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phenopath |
shpc-registry automated BioContainers addition for bioconductor-phenopath |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phenotest |
shpc-registry automated BioContainers addition for bioconductor-phenotest |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-phenstat |
shpc-registry automated BioContainers addition for bioconductor-phenstat |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-philr |
shpc-registry automated BioContainers addition for bioconductor-philr |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phipdata |
shpc-registry automated BioContainers addition for bioconductor-phipdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-phosphonormalizer |
shpc-registry automated BioContainers addition for bioconductor-phosphonormalizer |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phosr |
shpc-registry automated BioContainers addition for bioconductor-phosr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-phylop35way.ucsc.mm39 |
singularity registry hpc automated addition for bioconductor-phylop35way.ucsc.mm39 |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phyloprofile |
shpc-registry automated BioContainers addition for bioconductor-phyloprofile |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phyloprofiledata |
shpc-registry automated BioContainers addition for bioconductor-phyloprofiledata |
pandoc-server, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-phyloseq |
shpc-registry automated BioContainers addition for bioconductor-phyloseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pi |
shpc-registry automated BioContainers addition for bioconductor-pi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-piano |
shpc-registry automated BioContainers addition for bioconductor-piano |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pickgene |
shpc-registry automated BioContainers addition for bioconductor-pickgene |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pics |
shpc-registry automated BioContainers addition for bioconductor-pics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pig.db0 |
shpc-registry automated BioContainers addition for bioconductor-pig.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pigengene |
shpc-registry automated BioContainers addition for bioconductor-pigengene |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ping |
shpc-registry automated BioContainers addition for bioconductor-ping |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pint |
shpc-registry automated BioContainers addition for bioconductor-pint |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pipecomp |
shpc-registry automated BioContainers addition for bioconductor-pipecomp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pipeframe |
shpc-registry automated BioContainers addition for bioconductor-pipeframe |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pkgdeptools |
shpc-registry automated BioContainers addition for bioconductor-pkgdeptools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-planet |
shpc-registry automated BioContainers addition for bioconductor-planet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-planttfhunter |
singularity registry hpc automated addition for bioconductor-planttfhunter |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-plasfia |
shpc-registry automated BioContainers addition for bioconductor-plasfia |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-plasmodiumanophelescdf |
shpc-registry automated BioContainers addition for bioconductor-plasmodiumanophelescdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-plasmodiumanophelesprobe |
shpc-registry automated BioContainers addition for bioconductor-plasmodiumanophelesprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-plasmut |
singularity registry hpc automated addition for bioconductor-plasmut |
pcre2posix_test, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-platecore |
shpc-registry automated BioContainers addition for bioconductor-platecore |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-plethy |
shpc-registry automated BioContainers addition for bioconductor-plethy |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-plgem |
shpc-registry automated BioContainers addition for bioconductor-plgem |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-plier |
shpc-registry automated BioContainers addition for bioconductor-plier |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-plogo2 |
shpc-registry automated BioContainers addition for bioconductor-plogo2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-plotgardener |
shpc-registry automated BioContainers addition for bioconductor-plotgardener |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-plotgardenerdata |
shpc-registry automated BioContainers addition for bioconductor-plotgardenerdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-plotgrouper |
shpc-registry automated BioContainers addition for bioconductor-plotgrouper |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-plpe |
shpc-registry automated BioContainers addition for bioconductor-plpe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-plrs |
shpc-registry automated BioContainers addition for bioconductor-plrs |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-plw |
shpc-registry automated BioContainers addition for bioconductor-plw |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-plyinteractions |
singularity registry hpc automated addition for bioconductor-plyinteractions |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-plyranges |
shpc-registry automated BioContainers addition for bioconductor-plyranges |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pmm |
shpc-registry automated BioContainers addition for bioconductor-pmm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pmp |
shpc-registry automated BioContainers addition for bioconductor-pmp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pocrcannotation.db |
shpc-registry automated BioContainers addition for bioconductor-pocrcannotation.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-podcall |
shpc-registry automated BioContainers addition for bioconductor-podcall |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-podkat |
shpc-registry automated BioContainers addition for bioconductor-podkat |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pogos |
shpc-registry automated BioContainers addition for bioconductor-pogos |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-polyester |
shpc-registry automated BioContainers addition for bioconductor-polyester |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-polyfit |
shpc-registry automated BioContainers addition for bioconductor-polyfit |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-polyphen.hsapiens.dbsnp131 |
shpc-registry automated BioContainers addition for bioconductor-polyphen.hsapiens.dbsnp131 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-poma |
shpc-registry automated BioContainers addition for bioconductor-poma |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-poplarcdf |
shpc-registry automated BioContainers addition for bioconductor-poplarcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-poplarprobe |
shpc-registry automated BioContainers addition for bioconductor-poplarprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-porcine.db |
shpc-registry automated BioContainers addition for bioconductor-porcine.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-porcinecdf |
shpc-registry automated BioContainers addition for bioconductor-porcinecdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-porcineprobe |
shpc-registry automated BioContainers addition for bioconductor-porcineprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-post |
shpc-registry automated BioContainers addition for bioconductor-post |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-potra |
shpc-registry automated BioContainers addition for bioconductor-potra |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-powerexplorer |
shpc-registry automated BioContainers addition for bioconductor-powerexplorer |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-powertcr |
shpc-registry automated BioContainers addition for bioconductor-powertcr |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-powsc |
shpc-registry automated BioContainers addition for bioconductor-powsc |
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GITHUB
|
quay.io/biocontainers/bioconductor-ppcseq |
shpc-registry automated BioContainers addition for bioconductor-ppcseq |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-ppidata |
shpc-registry automated BioContainers addition for bioconductor-ppidata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ppinfer |
shpc-registry automated BioContainers addition for bioconductor-ppinfer |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ppistats |
shpc-registry automated BioContainers addition for bioconductor-ppistats |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pqsfinder |
shpc-registry automated BioContainers addition for bioconductor-pqsfinder |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-prada |
shpc-registry automated BioContainers addition for bioconductor-prada |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pram |
shpc-registry automated BioContainers addition for bioconductor-pram |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-prebs |
shpc-registry automated BioContainers addition for bioconductor-prebs |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-prebsdata |
shpc-registry automated BioContainers addition for bioconductor-prebsdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-precisetad |
shpc-registry automated BioContainers addition for bioconductor-precisetad |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-precisetadhub |
shpc-registry automated BioContainers addition for bioconductor-precisetadhub |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-precisiontrialdrawer |
shpc-registry automated BioContainers addition for bioconductor-precisiontrialdrawer |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-preda |
shpc-registry automated BioContainers addition for bioconductor-preda |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-predasampledata |
shpc-registry automated BioContainers addition for bioconductor-predasampledata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-predictionet |
shpc-registry automated BioContainers addition for bioconductor-predictionet |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-preprocesscore |
shpc-registry automated BioContainers addition for bioconductor-preprocesscore |
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GITHUB
|
quay.io/biocontainers/bioconductor-primeviewcdf |
shpc-registry automated BioContainers addition for bioconductor-primeviewcdf |
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GITHUB
|
quay.io/biocontainers/bioconductor-primeviewprobe |
shpc-registry automated BioContainers addition for bioconductor-primeviewprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-primirtss |
shpc-registry automated BioContainers addition for bioconductor-primirtss |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-prince |
shpc-registry automated BioContainers addition for bioconductor-prince |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-prize |
shpc-registry automated BioContainers addition for bioconductor-prize |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-proactiv |
shpc-registry automated BioContainers addition for bioconductor-proactiv |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-probamr |
shpc-registry automated BioContainers addition for bioconductor-probamr |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-probatch |
shpc-registry automated BioContainers addition for bioconductor-probatch |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-process |
shpc-registry automated BioContainers addition for bioconductor-process |
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GITHUB
|
quay.io/biocontainers/bioconductor-procoil |
shpc-registry automated BioContainers addition for bioconductor-procoil |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-proda |
shpc-registry automated BioContainers addition for bioconductor-proda |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-prodata |
shpc-registry automated BioContainers addition for bioconductor-prodata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-profia |
shpc-registry automated BioContainers addition for bioconductor-profia |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-profileplyr |
shpc-registry automated BioContainers addition for bioconductor-profileplyr |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-profilescoredist |
shpc-registry automated BioContainers addition for bioconductor-profilescoredist |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-progeny |
shpc-registry automated BioContainers addition for bioconductor-progeny |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-projectr |
shpc-registry automated BioContainers addition for bioconductor-projectr |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-proloc |
shpc-registry automated BioContainers addition for bioconductor-proloc |
zipcmp, zipmerge, ziptool, gif2hdf, glpsol, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-prolocdata |
shpc-registry automated BioContainers addition for bioconductor-prolocdata |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-prolocgui |
shpc-registry automated BioContainers addition for bioconductor-prolocgui |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-promise |
shpc-registry automated BioContainers addition for bioconductor-promise |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-proper |
shpc-registry automated BioContainers addition for bioconductor-proper |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-props |
shpc-registry automated BioContainers addition for bioconductor-props |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-prostar |
shpc-registry automated BioContainers addition for bioconductor-prostar |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-prostatecancercamcap |
shpc-registry automated BioContainers addition for bioconductor-prostatecancercamcap |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-prostatecancergrasso |
shpc-registry automated BioContainers addition for bioconductor-prostatecancergrasso |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-prostatecancerstockholm |
shpc-registry automated BioContainers addition for bioconductor-prostatecancerstockholm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-prostatecancertaylor |
shpc-registry automated BioContainers addition for bioconductor-prostatecancertaylor |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-prostatecancervarambally |
shpc-registry automated BioContainers addition for bioconductor-prostatecancervarambally |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-prot2d |
shpc-registry automated BioContainers addition for bioconductor-prot2d |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-proteasy |
singularity registry hpc automated addition for bioconductor-proteasy |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, jpackage, cups-config, ippeveprinter, ipptool, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner |
|
GITHUB
|
quay.io/biocontainers/bioconductor-proteinprofiles |
shpc-registry automated BioContainers addition for bioconductor-proteinprofiles |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-proteodisco |
shpc-registry automated BioContainers addition for bioconductor-proteodisco |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-proteomicsannotationhubdata |
shpc-registry automated BioContainers addition for bioconductor-proteomicsannotationhubdata |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-proteomm |
shpc-registry automated BioContainers addition for bioconductor-proteomm |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-proteoqc |
shpc-registry automated BioContainers addition for bioconductor-proteoqc |
pandoc-citeproc, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-protgear |
singularity registry hpc automated addition for bioconductor-protgear |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, pandoc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-protgenerics |
shpc-registry automated BioContainers addition for bioconductor-protgenerics |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-psea |
shpc-registry automated BioContainers addition for bioconductor-psea |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-psichomics |
shpc-registry automated BioContainers addition for bioconductor-psichomics |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-psicquic |
shpc-registry automated BioContainers addition for bioconductor-psicquic |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-psmatch |
singularity registry hpc automated addition for bioconductor-psmatch |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-psygenet2r |
shpc-registry automated BioContainers addition for bioconductor-psygenet2r |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ptairdata |
shpc-registry automated BioContainers addition for bioconductor-ptairdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ptairms |
shpc-registry automated BioContainers addition for bioconductor-ptairms |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pth2o2lipids |
shpc-registry automated BioContainers addition for bioconductor-pth2o2lipids |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-pubscore |
shpc-registry automated BioContainers addition for bioconductor-pubscore |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pulsedsilac |
shpc-registry automated BioContainers addition for bioconductor-pulsedsilac |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-puma |
shpc-registry automated BioContainers addition for bioconductor-puma |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pumadata |
shpc-registry automated BioContainers addition for bioconductor-pumadata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-purecn |
shpc-registry automated BioContainers addition for bioconductor-purecn |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pvac |
shpc-registry automated BioContainers addition for bioconductor-pvac |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pvca |
shpc-registry automated BioContainers addition for bioconductor-pvca |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pviz |
shpc-registry automated BioContainers addition for bioconductor-pviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pwmenrich.hsapiens.background |
shpc-registry automated BioContainers addition for bioconductor-pwmenrich.hsapiens.background |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pwmenrich |
shpc-registry automated BioContainers addition for bioconductor-pwmenrich |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pwmenrich.mmusculus.background |
shpc-registry automated BioContainers addition for bioconductor-pwmenrich.mmusculus.background |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pwomics |
shpc-registry automated BioContainers addition for bioconductor-pwomics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pwrewas.data |
shpc-registry automated BioContainers addition for bioconductor-pwrewas.data |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-pwrewas |
shpc-registry automated BioContainers addition for bioconductor-pwrewas |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-qckitfastq |
shpc-registry automated BioContainers addition for bioconductor-qckitfastq |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qcmetrics |
shpc-registry automated BioContainers addition for bioconductor-qcmetrics |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qdnaseq.hg19 |
shpc-registry automated BioContainers addition for bioconductor-qdnaseq.hg19 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-qdnaseq |
shpc-registry automated BioContainers addition for bioconductor-qdnaseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-qdnaseq.mm10 |
shpc-registry automated BioContainers addition for bioconductor-qdnaseq.mm10 |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qfeatures |
shpc-registry automated BioContainers addition for bioconductor-qfeatures |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-qmtools |
singularity registry hpc automated addition for bioconductor-qmtools |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qpcrnorm |
shpc-registry automated BioContainers addition for bioconductor-qpcrnorm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-qpgraph |
shpc-registry automated BioContainers addition for bioconductor-qpgraph |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-qplexanalyzer |
shpc-registry automated BioContainers addition for bioconductor-qplexanalyzer |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qplexdata |
shpc-registry automated BioContainers addition for bioconductor-qplexdata |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qrqc |
shpc-registry automated BioContainers addition for bioconductor-qrqc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-qsea |
shpc-registry automated BioContainers addition for bioconductor-qsea |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qsmooth |
shpc-registry automated BioContainers addition for bioconductor-qsmooth |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qsutils |
shpc-registry automated BioContainers addition for bioconductor-qsutils |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qsvar |
singularity registry hpc automated addition for bioconductor-qsvar |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qtlexperiment |
singularity registry hpc automated addition for bioconductor-qtlexperiment |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qtlizer |
shpc-registry automated BioContainers addition for bioconductor-qtlizer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-qualifier |
shpc-registry automated BioContainers addition for bioconductor-qualifier |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-quantiseqr |
shpc-registry automated BioContainers addition for bioconductor-quantiseqr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-quantro |
shpc-registry automated BioContainers addition for bioconductor-quantro |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-quantsmooth |
shpc-registry automated BioContainers addition for bioconductor-quantsmooth |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-quartpac |
shpc-registry automated BioContainers addition for bioconductor-quartpac |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-quasr |
shpc-registry automated BioContainers addition for bioconductor-quasr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-quaternaryprod |
shpc-registry automated BioContainers addition for bioconductor-quaternaryprod |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qubic |
shpc-registry automated BioContainers addition for bioconductor-qubic |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-qubicdata |
shpc-registry automated BioContainers addition for bioconductor-qubicdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-qusage |
shpc-registry automated BioContainers addition for bioconductor-qusage |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-qvalue |
shpc-registry automated BioContainers addition for bioconductor-qvalue |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-r10kcod.db |
shpc-registry automated BioContainers addition for bioconductor-r10kcod.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-r3cpet |
shpc-registry automated BioContainers addition for bioconductor-r3cpet |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-r3cseq |
shpc-registry automated BioContainers addition for bioconductor-r3cseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-r453plus1toolbox |
shpc-registry automated BioContainers addition for bioconductor-r453plus1toolbox |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-r4rna |
shpc-registry automated BioContainers addition for bioconductor-r4rna |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-radiogx |
shpc-registry automated BioContainers addition for bioconductor-radiogx |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rae230a.db |
shpc-registry automated BioContainers addition for bioconductor-rae230a.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rae230acdf |
shpc-registry automated BioContainers addition for bioconductor-rae230acdf |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rae230aprobe |
shpc-registry automated BioContainers addition for bioconductor-rae230aprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rae230b.db |
shpc-registry automated BioContainers addition for bioconductor-rae230b.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rae230bcdf |
shpc-registry automated BioContainers addition for bioconductor-rae230bcdf |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rae230bprobe |
shpc-registry automated BioContainers addition for bioconductor-rae230bprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-raerdata |
singularity registry hpc automated addition for bioconductor-raerdata |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-raex10stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-raex10stprobeset.db |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-raex10sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-raex10sttranscriptcluster.db |
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GITHUB
|
quay.io/biocontainers/bioconductor-raexexonprobesetlocation |
shpc-registry automated BioContainers addition for bioconductor-raexexonprobesetlocation |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ragene10stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-ragene10stprobeset.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ragene10sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-ragene10sttranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ragene10stv1cdf |
shpc-registry automated BioContainers addition for bioconductor-ragene10stv1cdf |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-ragene10stv1probe |
shpc-registry automated BioContainers addition for bioconductor-ragene10stv1probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ragene11stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-ragene11stprobeset.db |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-ragene11sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-ragene11sttranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ragene20stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-ragene20stprobeset.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ragene20sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-ragene20sttranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ragene21stprobeset.db |
shpc-registry automated BioContainers addition for bioconductor-ragene21stprobeset.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ragene21sttranscriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-ragene21sttranscriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-raggedexperiment |
shpc-registry automated BioContainers addition for bioconductor-raggedexperiment |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-raids |
singularity registry hpc automated addition for bioconductor-raids |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rain |
shpc-registry automated BioContainers addition for bioconductor-rain |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rama |
shpc-registry automated BioContainers addition for bioconductor-rama |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ramigo |
shpc-registry automated BioContainers addition for bioconductor-ramigo |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ramr |
shpc-registry automated BioContainers addition for bioconductor-ramr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ramwas |
shpc-registry automated BioContainers addition for bioconductor-ramwas |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-randomwalkrestartmh |
shpc-registry automated BioContainers addition for bioconductor-randomwalkrestartmh |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-randpack |
shpc-registry automated BioContainers addition for bioconductor-randpack |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-randrotation |
shpc-registry automated BioContainers addition for bioconductor-randrotation |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rankprod |
shpc-registry automated BioContainers addition for bioconductor-rankprod |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-raresim |
singularity registry hpc automated addition for bioconductor-raresim |
2to3-3.11, f2py3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rarevariantvis |
shpc-registry automated BioContainers addition for bioconductor-rarevariantvis |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rariant |
shpc-registry automated BioContainers addition for bioconductor-rariant |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rarr |
singularity registry hpc automated addition for bioconductor-rarr |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rat.db0 |
shpc-registry automated BioContainers addition for bioconductor-rat.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rat2302.db |
shpc-registry automated BioContainers addition for bioconductor-rat2302.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rat2302cdf |
shpc-registry automated BioContainers addition for bioconductor-rat2302cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rat2302frmavecs |
shpc-registry automated BioContainers addition for bioconductor-rat2302frmavecs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rat2302probe |
shpc-registry automated BioContainers addition for bioconductor-rat2302probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ratchrloc |
shpc-registry automated BioContainers addition for bioconductor-ratchrloc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rattoxfxcdf |
shpc-registry automated BioContainers addition for bioconductor-rattoxfxcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rattoxfxprobe |
shpc-registry automated BioContainers addition for bioconductor-rattoxfxprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rattus.norvegicus |
shpc-registry automated BioContainers addition for bioconductor-rattus.norvegicus |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rawrr |
shpc-registry automated BioContainers addition for bioconductor-rawrr |
aprofutil, csc, csi, illinkanalyzer, mono-hang-watchdog, vbc, mono-package-runtime, sgen-grep-binprot, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rbcbook1 |
shpc-registry automated BioContainers addition for bioconductor-rbcbook1 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rbec |
shpc-registry automated BioContainers addition for bioconductor-rbec |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rbgl |
shpc-registry automated BioContainers addition for bioconductor-rbgl |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rbioformats |
singularity registry hpc automated addition for bioconductor-rbioformats |
jwebserver, hb-info, jpackage, tjbench, cups-config, ippeveprinter, ipptool, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, pandoc, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rbioinf |
shpc-registry automated BioContainers addition for bioconductor-rbioinf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rbiopaxparser |
shpc-registry automated BioContainers addition for bioconductor-rbiopaxparser |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rbm |
shpc-registry automated BioContainers addition for bioconductor-rbm |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rbowtie |
shpc-registry automated BioContainers addition for bioconductor-rbowtie |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rbowtie2 |
shpc-registry automated BioContainers addition for bioconductor-rbowtie2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rbsurv |
shpc-registry automated BioContainers addition for bioconductor-rbsurv |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rbwa |
singularity registry hpc automated addition for bioconductor-rbwa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcade |
shpc-registry automated BioContainers addition for bioconductor-rcade |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcas |
shpc-registry automated BioContainers addition for bioconductor-rcas |
pandoc-citeproc, pandoc, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcaspar |
shpc-registry automated BioContainers addition for bioconductor-rcaspar |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcellminer |
shpc-registry automated BioContainers addition for bioconductor-rcellminer |
extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcellminerdata |
shpc-registry automated BioContainers addition for bioconductor-rcellminerdata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcgh |
shpc-registry automated BioContainers addition for bioconductor-rcgh |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rchemcpp |
shpc-registry automated BioContainers addition for bioconductor-rchemcpp |
croco-0.6-config, csslint-0.6, g-ir-doc-tool, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rchyoptimyx |
shpc-registry automated BioContainers addition for bioconductor-rchyoptimyx |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcistarget |
shpc-registry automated BioContainers addition for bioconductor-rcistarget |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcm |
shpc-registry automated BioContainers addition for bioconductor-rcm |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcollectl |
singularity registry hpc automated addition for bioconductor-rcollectl |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcpi |
shpc-registry automated BioContainers addition for bioconductor-rcpi |
rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, jfr, jaotc, aserver, jdeprscan, jhsdb |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcsl |
shpc-registry automated BioContainers addition for bioconductor-rcsl |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcwl |
shpc-registry automated BioContainers addition for bioconductor-rcwl |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcwlpipelines |
shpc-registry automated BioContainers addition for bioconductor-rcwlpipelines |
node, npm, npx, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcx |
singularity registry hpc automated addition for bioconductor-rcx |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcy3 |
shpc-registry automated BioContainers addition for bioconductor-rcy3 |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcyjs |
shpc-registry automated BioContainers addition for bioconductor-rcyjs |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rcytoscape |
shpc-registry automated BioContainers addition for bioconductor-rcytoscape |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rdavidwebservice |
shpc-registry automated BioContainers addition for bioconductor-rdavidwebservice |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rdgidb |
shpc-registry automated BioContainers addition for bioconductor-rdgidb |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rdisop |
shpc-registry automated BioContainers addition for bioconductor-rdisop |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rdrtoolbox |
shpc-registry automated BioContainers addition for bioconductor-rdrtoolbox |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-reactome.db |
shpc-registry automated BioContainers addition for bioconductor-reactome.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-reactomecontentservice4r |
shpc-registry automated BioContainers addition for bioconductor-reactomecontentservice4r |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-reactomegraph4r |
shpc-registry automated BioContainers addition for bioconductor-reactomegraph4r |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-reactomegsa.data |
shpc-registry automated BioContainers addition for bioconductor-reactomegsa.data |
geosop, geos-config, glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-reactomegsa |
shpc-registry automated BioContainers addition for bioconductor-reactomegsa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-reactomepa |
shpc-registry automated BioContainers addition for bioconductor-reactomepa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-readat |
shpc-registry automated BioContainers addition for bioconductor-readat |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-readqpcr |
shpc-registry automated BioContainers addition for bioconductor-readqpcr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-reb |
shpc-registry automated BioContainers addition for bioconductor-reb |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rebet |
shpc-registry automated BioContainers addition for bioconductor-rebet |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rebook |
shpc-registry automated BioContainers addition for bioconductor-rebook |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-receptloss |
shpc-registry automated BioContainers addition for bioconductor-receptloss |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-reconsi |
shpc-registry automated BioContainers addition for bioconductor-reconsi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-recount |
shpc-registry automated BioContainers addition for bioconductor-recount |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-recount3 |
shpc-registry automated BioContainers addition for bioconductor-recount3 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-recountmethylation |
shpc-registry automated BioContainers addition for bioconductor-recountmethylation |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-recoup |
shpc-registry automated BioContainers addition for bioconductor-recoup |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-reder |
shpc-registry automated BioContainers addition for bioconductor-reder |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-redisparam |
singularity registry hpc automated addition for bioconductor-redisparam |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-redseq |
shpc-registry automated BioContainers addition for bioconductor-redseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-refnet |
shpc-registry automated BioContainers addition for bioconductor-refnet |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-refplus |
shpc-registry automated BioContainers addition for bioconductor-refplus |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-regenrich |
shpc-registry automated BioContainers addition for bioconductor-regenrich |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-regionalpcs |
singularity registry hpc automated addition for bioconductor-regionalpcs |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-regionalst |
singularity registry hpc automated addition for bioconductor-regionalst |
xgboost, pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, glpsol, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-regioner |
shpc-registry automated BioContainers addition for bioconductor-regioner |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-regionereloaded |
singularity registry hpc automated addition for bioconductor-regionereloaded |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-regionreport |
shpc-registry automated BioContainers addition for bioconductor-regionreport |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-regparallel |
shpc-registry automated BioContainers addition for bioconductor-regparallel |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-regsplice |
shpc-registry automated BioContainers addition for bioconductor-regsplice |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-regutools |
shpc-registry automated BioContainers addition for bioconductor-regutools |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jaotc, jdeprscan, jhsdb, jimage, jlink, jmod |
|
GITHUB
|
quay.io/biocontainers/bioconductor-remp |
shpc-registry automated BioContainers addition for bioconductor-remp |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-repitools |
shpc-registry automated BioContainers addition for bioconductor-repitools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-reportingtools |
shpc-registry automated BioContainers addition for bioconductor-reportingtools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-repviz |
shpc-registry automated BioContainers addition for bioconductor-repviz |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-reqon |
shpc-registry automated BioContainers addition for bioconductor-reqon |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-residualmatrix |
shpc-registry automated BioContainers addition for bioconductor-residualmatrix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-resolve |
singularity registry hpc automated addition for bioconductor-resolve |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-restfulse |
shpc-registry automated BioContainers addition for bioconductor-restfulse |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-restfulsedata |
shpc-registry automated BioContainers addition for bioconductor-restfulsedata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-retrofit |
singularity registry hpc automated addition for bioconductor-retrofit |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-reusedata |
singularity registry hpc automated addition for bioconductor-reusedata |
corepack, git2, npx, node, npm, hb-info, tjbench, glpsol, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rexposome |
shpc-registry automated BioContainers addition for bioconductor-rexposome |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rfarm |
shpc-registry automated BioContainers addition for bioconductor-rfarm |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rfastp |
shpc-registry automated BioContainers addition for bioconductor-rfastp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rforproteomics |
shpc-registry automated BioContainers addition for bioconductor-rforproteomics |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rfpred |
shpc-registry automated BioContainers addition for bioconductor-rfpred |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rgadem |
shpc-registry automated BioContainers addition for bioconductor-rgadem |
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GITHUB
|
quay.io/biocontainers/bioconductor-rgalaxy |
shpc-registry automated BioContainers addition for bioconductor-rgalaxy |
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GITHUB
|
quay.io/biocontainers/bioconductor-rgenometracks |
shpc-registry automated BioContainers addition for bioconductor-rgenometracks |
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GITHUB
|
quay.io/biocontainers/bioconductor-rgenometracksdata |
shpc-registry automated BioContainers addition for bioconductor-rgenometracksdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgin |
shpc-registry automated BioContainers addition for bioconductor-rgin |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgmql |
shpc-registry automated BioContainers addition for bioconductor-rgmql |
extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgmqllib |
shpc-registry automated BioContainers addition for bioconductor-rgmqllib |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgntx |
singularity registry hpc automated addition for bioconductor-rgntx |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/bioconductor-rgoslin |
singularity registry hpc automated addition for bioconductor-rgoslin |
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GITHUB
|
quay.io/biocontainers/bioconductor-rgraph2js |
shpc-registry automated BioContainers addition for bioconductor-rgraph2js |
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GITHUB
|
quay.io/biocontainers/bioconductor-rgraphviz |
shpc-registry automated BioContainers addition for bioconductor-rgraphviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgreat |
shpc-registry automated BioContainers addition for bioconductor-rgreat |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgsea |
shpc-registry automated BioContainers addition for bioconductor-rgsea |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rgsepd |
shpc-registry automated BioContainers addition for bioconductor-rgsepd |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgu34a.db |
shpc-registry automated BioContainers addition for bioconductor-rgu34a.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgu34acdf |
shpc-registry automated BioContainers addition for bioconductor-rgu34acdf |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rgu34aprobe |
shpc-registry automated BioContainers addition for bioconductor-rgu34aprobe |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rgu34b.db |
shpc-registry automated BioContainers addition for bioconductor-rgu34b.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgu34bcdf |
shpc-registry automated BioContainers addition for bioconductor-rgu34bcdf |
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GITHUB
|
quay.io/biocontainers/bioconductor-rgu34bprobe |
shpc-registry automated BioContainers addition for bioconductor-rgu34bprobe |
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GITHUB
|
quay.io/biocontainers/bioconductor-rgu34c.db |
shpc-registry automated BioContainers addition for bioconductor-rgu34c.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rgu34ccdf |
shpc-registry automated BioContainers addition for bioconductor-rgu34ccdf |
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GITHUB
|
quay.io/biocontainers/bioconductor-rgu34cprobe |
shpc-registry automated BioContainers addition for bioconductor-rgu34cprobe |
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GITHUB
|
quay.io/biocontainers/bioconductor-rguatlas4k.db |
shpc-registry automated BioContainers addition for bioconductor-rguatlas4k.db |
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GITHUB
|
quay.io/biocontainers/bioconductor-rgug4105a.db |
shpc-registry automated BioContainers addition for bioconductor-rgug4105a.db |
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GITHUB
|
quay.io/biocontainers/bioconductor-rgug4130a.db |
shpc-registry automated BioContainers addition for bioconductor-rgug4130a.db |
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GITHUB
|
quay.io/biocontainers/bioconductor-rgug4131a.db |
shpc-registry automated BioContainers addition for bioconductor-rgug4131a.db |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rhdf5 |
shpc-registry automated BioContainers addition for bioconductor-rhdf5 |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rhdf5client |
shpc-registry automated BioContainers addition for bioconductor-rhdf5client |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rhdf5filters |
shpc-registry automated BioContainers addition for bioconductor-rhdf5filters |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rhdf5lib |
shpc-registry automated BioContainers addition for bioconductor-rhdf5lib |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rhesus.db0 |
shpc-registry automated BioContainers addition for bioconductor-rhesus.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rhesuscdf |
shpc-registry automated BioContainers addition for bioconductor-rhesuscdf |
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GITHUB
|
quay.io/biocontainers/bioconductor-rhesusprobe |
shpc-registry automated BioContainers addition for bioconductor-rhesusprobe |
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GITHUB
|
quay.io/biocontainers/bioconductor-rheumaticconditionwollbold |
shpc-registry automated BioContainers addition for bioconductor-rheumaticconditionwollbold |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rhisat2 |
shpc-registry automated BioContainers addition for bioconductor-rhisat2 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rhtslib |
shpc-registry automated BioContainers addition for bioconductor-rhtslib |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rhvdm |
shpc-registry automated BioContainers addition for bioconductor-rhvdm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ri16cod.db |
shpc-registry automated BioContainers addition for bioconductor-ri16cod.db |
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GITHUB
|
quay.io/biocontainers/bioconductor-ribocrypt |
shpc-registry automated BioContainers addition for bioconductor-ribocrypt |
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GITHUB
|
quay.io/biocontainers/bioconductor-ribodipa |
shpc-registry automated BioContainers addition for bioconductor-ribodipa |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-riboprofiling |
shpc-registry automated BioContainers addition for bioconductor-riboprofiling |
my_print_defaults, mysql_config, perror, wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ribor |
shpc-registry automated BioContainers addition for bioconductor-ribor |
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GITHUB
|
quay.io/biocontainers/bioconductor-riboseqr |
shpc-registry automated BioContainers addition for bioconductor-riboseqr |
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GITHUB
|
quay.io/biocontainers/bioconductor-ribosomaldatabaseproject11.5mgdb |
shpc-registry automated BioContainers addition for bioconductor-ribosomaldatabaseproject11.5mgdb |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ribosomeprofilingqc |
shpc-registry automated BioContainers addition for bioconductor-ribosomeprofilingqc |
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GITHUB
|
quay.io/biocontainers/bioconductor-ricecdf |
shpc-registry automated BioContainers addition for bioconductor-ricecdf |
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GITHUB
|
quay.io/biocontainers/bioconductor-riceprobe |
shpc-registry automated BioContainers addition for bioconductor-riceprobe |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rifi |
singularity registry hpc automated addition for bioconductor-rifi |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rificomparative |
singularity registry hpc automated addition for bioconductor-rificomparative |
git2, hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rimmport |
shpc-registry automated BioContainers addition for bioconductor-rimmport |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ringo |
shpc-registry automated BioContainers addition for bioconductor-ringo |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-ripat |
shpc-registry automated BioContainers addition for bioconductor-ripat |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-ripseeker |
shpc-registry automated BioContainers addition for bioconductor-ripseeker |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ripseekerdata |
shpc-registry automated BioContainers addition for bioconductor-ripseekerdata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-risa |
shpc-registry automated BioContainers addition for bioconductor-risa |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ritan |
shpc-registry automated BioContainers addition for bioconductor-ritan |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ritandata |
shpc-registry automated BioContainers addition for bioconductor-ritandata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-river |
shpc-registry automated BioContainers addition for bioconductor-river |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rjmcmcnucleosomes |
shpc-registry automated BioContainers addition for bioconductor-rjmcmcnucleosomes |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rlassocox |
shpc-registry automated BioContainers addition for bioconductor-rlassocox |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rlhub |
shpc-registry automated BioContainers addition for bioconductor-rlhub |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rlmm |
shpc-registry automated BioContainers addition for bioconductor-rlmm |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rlseq |
shpc-registry automated BioContainers addition for bioconductor-rlseq |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rmagpie |
shpc-registry automated BioContainers addition for bioconductor-rmagpie |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rmassbank |
shpc-registry automated BioContainers addition for bioconductor-rmassbank |
obfitall, obmm, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rmassbankdata |
shpc-registry automated BioContainers addition for bioconductor-rmassbankdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rmat |
shpc-registry automated BioContainers addition for bioconductor-rmat |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rmelting |
shpc-registry automated BioContainers addition for bioconductor-rmelting |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rmir.hs.mirna |
shpc-registry automated BioContainers addition for bioconductor-rmir.hs.mirna |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rmir.hsa |
shpc-registry automated BioContainers addition for bioconductor-rmir.hsa |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rmir |
shpc-registry automated BioContainers addition for bioconductor-rmir |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rmmquant |
shpc-registry automated BioContainers addition for bioconductor-rmmquant |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rmspc |
shpc-registry automated BioContainers addition for bioconductor-rmspc |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaagecalc |
shpc-registry automated BioContainers addition for bioconductor-rnaagecalc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnadecay |
shpc-registry automated BioContainers addition for bioconductor-rnadecay |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaeditr |
shpc-registry automated BioContainers addition for bioconductor-rnaeditr |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rnagilentdesign028282.db |
shpc-registry automated BioContainers addition for bioconductor-rnagilentdesign028282.db |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rnainteract |
shpc-registry automated BioContainers addition for bioconductor-rnainteract |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rnainteractmapk |
shpc-registry automated BioContainers addition for bioconductor-rnainteractmapk |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaither |
shpc-registry automated BioContainers addition for bioconductor-rnaither |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnamodr.alkanilineseq |
shpc-registry automated BioContainers addition for bioconductor-rnamodr.alkanilineseq |
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GITHUB
|
quay.io/biocontainers/bioconductor-rnamodr.data |
shpc-registry automated BioContainers addition for bioconductor-rnamodr.data |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rnamodr |
shpc-registry automated BioContainers addition for bioconductor-rnamodr |
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GITHUB
|
quay.io/biocontainers/bioconductor-rnamodr.ml |
shpc-registry automated BioContainers addition for bioconductor-rnamodr.ml |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rnamodr.ribomethseq |
shpc-registry automated BioContainers addition for bioconductor-rnamodr.ribomethseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaprobr |
shpc-registry automated BioContainers addition for bioconductor-rnaprobr |
my_print_defaults, mysql_config, perror, wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnasense |
shpc-registry automated BioContainers addition for bioconductor-rnasense |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaseqcomp |
shpc-registry automated BioContainers addition for bioconductor-rnaseqcomp |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaseqcovarimpute |
singularity registry hpc automated addition for bioconductor-rnaseqcovarimpute |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaseqdata.hnrnpc.bam.chr14 |
shpc-registry automated BioContainers addition for bioconductor-rnaseqdata.hnrnpc.bam.chr14 |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaseqmap |
shpc-registry automated BioContainers addition for bioconductor-rnaseqmap |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaseqpower |
shpc-registry automated BioContainers addition for bioconductor-rnaseqpower |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaseqr |
shpc-registry automated BioContainers addition for bioconductor-rnaseqr |
rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaseqrdata |
shpc-registry automated BioContainers addition for bioconductor-rnaseqrdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaseqsamplesize |
shpc-registry automated BioContainers addition for bioconductor-rnaseqsamplesize |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rnaseqsamplesizedata |
shpc-registry automated BioContainers addition for bioconductor-rnaseqsamplesizedata |
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GITHUB
|
quay.io/biocontainers/bioconductor-rnbeads.hg19 |
shpc-registry automated BioContainers addition for bioconductor-rnbeads.hg19 |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rnbeads.hg38 |
shpc-registry automated BioContainers addition for bioconductor-rnbeads.hg38 |
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GITHUB
|
quay.io/biocontainers/bioconductor-rnbeads |
shpc-registry automated BioContainers addition for bioconductor-rnbeads |
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GITHUB
|
quay.io/biocontainers/bioconductor-rnbeads.mm10 |
shpc-registry automated BioContainers addition for bioconductor-rnbeads.mm10 |
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GITHUB
|
quay.io/biocontainers/bioconductor-rnbeads.mm9 |
shpc-registry automated BioContainers addition for bioconductor-rnbeads.mm9 |
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GITHUB
|
quay.io/biocontainers/bioconductor-rnbeads.rn5 |
shpc-registry automated BioContainers addition for bioconductor-rnbeads.rn5 |
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GITHUB
|
quay.io/biocontainers/bioconductor-rnits |
shpc-registry automated BioContainers addition for bioconductor-rnits |
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GITHUB
|
quay.io/biocontainers/bioconductor-rnu34.db |
shpc-registry automated BioContainers addition for bioconductor-rnu34.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rnu34cdf |
shpc-registry automated BioContainers addition for bioconductor-rnu34cdf |
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GITHUB
|
quay.io/biocontainers/bioconductor-rnu34probe |
shpc-registry automated BioContainers addition for bioconductor-rnu34probe |
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GITHUB
|
quay.io/biocontainers/bioconductor-roar |
shpc-registry automated BioContainers addition for bioconductor-roar |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-roastgsa |
singularity registry hpc automated addition for bioconductor-roastgsa |
pcre2posix_test, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-roberts2005annotation.db |
shpc-registry automated BioContainers addition for bioconductor-roberts2005annotation.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-roc |
shpc-registry automated BioContainers addition for bioconductor-roc |
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GITHUB
|
quay.io/biocontainers/bioconductor-rocpai |
shpc-registry automated BioContainers addition for bioconductor-rocpai |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rolde |
singularity registry hpc automated addition for bioconductor-rolde |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-roleswitch |
shpc-registry automated BioContainers addition for bioconductor-roleswitch |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rols |
shpc-registry automated BioContainers addition for bioconductor-rols |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rontotools |
shpc-registry automated BioContainers addition for bioconductor-rontotools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ropls |
shpc-registry automated BioContainers addition for bioconductor-ropls |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-roseq |
shpc-registry automated BioContainers addition for bioconductor-roseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rots |
shpc-registry automated BioContainers addition for bioconductor-rots |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rpa |
shpc-registry automated BioContainers addition for bioconductor-rpa |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rprimer |
singularity registry hpc automated addition for bioconductor-rprimer |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rprotobuflib |
shpc-registry automated BioContainers addition for bioconductor-rprotobuflib |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rpsixml |
shpc-registry automated BioContainers addition for bioconductor-rpsixml |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rpx |
shpc-registry automated BioContainers addition for bioconductor-rpx |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rqc |
shpc-registry automated BioContainers addition for bioconductor-rqc |
pandoc-server, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rqt |
shpc-registry automated BioContainers addition for bioconductor-rqt |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rqubic |
shpc-registry automated BioContainers addition for bioconductor-rqubic |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rrbsdata |
shpc-registry automated BioContainers addition for bioconductor-rrbsdata |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rrdp |
shpc-registry automated BioContainers addition for bioconductor-rrdp |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rrdpdata |
shpc-registry automated BioContainers addition for bioconductor-rrdpdata |
jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs, pack200 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rrho |
shpc-registry automated BioContainers addition for bioconductor-rrho |
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GITHUB
|
quay.io/biocontainers/bioconductor-rrvgo |
shpc-registry automated BioContainers addition for bioconductor-rrvgo |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rsamtools |
shpc-registry automated BioContainers addition for bioconductor-rsamtools |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rsbml |
shpc-registry automated BioContainers addition for bioconductor-rsbml |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rscudo |
shpc-registry automated BioContainers addition for bioconductor-rscudo |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rsemmed |
shpc-registry automated BioContainers addition for bioconductor-rsemmed |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rseqan |
shpc-registry automated BioContainers addition for bioconductor-rseqan |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rsffreader |
shpc-registry automated BioContainers addition for bioconductor-rsffreader |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rsubread |
shpc-registry automated BioContainers addition for bioconductor-rsubread |
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GITHUB
|
quay.io/biocontainers/bioconductor-rsvsim |
shpc-registry automated BioContainers addition for bioconductor-rsvsim |
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GITHUB
|
quay.io/biocontainers/bioconductor-rsweep |
shpc-registry automated BioContainers addition for bioconductor-rsweep |
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GITHUB
|
quay.io/biocontainers/bioconductor-rta10probeset.db |
shpc-registry automated BioContainers addition for bioconductor-rta10probeset.db |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-rta10transcriptcluster.db |
shpc-registry automated BioContainers addition for bioconductor-rta10transcriptcluster.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtandem |
shpc-registry automated BioContainers addition for bioconductor-rtandem |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtca |
shpc-registry automated BioContainers addition for bioconductor-rtca |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtcga.clinical |
shpc-registry automated BioContainers addition for bioconductor-rtcga.clinical |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtcga.cnv |
shpc-registry automated BioContainers addition for bioconductor-rtcga.cnv |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtcga |
shpc-registry automated BioContainers addition for bioconductor-rtcga |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtcga.methylation |
shpc-registry automated BioContainers addition for bioconductor-rtcga.methylation |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtcga.mirnaseq |
shpc-registry automated BioContainers addition for bioconductor-rtcga.mirnaseq |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtcga.mrna |
shpc-registry automated BioContainers addition for bioconductor-rtcga.mrna |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtcga.mutations |
shpc-registry automated BioContainers addition for bioconductor-rtcga.mutations |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtcga.pancan12 |
shpc-registry automated BioContainers addition for bioconductor-rtcga.pancan12 |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtcga.rnaseq |
shpc-registry automated BioContainers addition for bioconductor-rtcga.rnaseq |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtcga.rppa |
shpc-registry automated BioContainers addition for bioconductor-rtcga.rppa |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtcgatoolbox |
shpc-registry automated BioContainers addition for bioconductor-rtcgatoolbox |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtn |
shpc-registry automated BioContainers addition for bioconductor-rtn |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtnduals |
shpc-registry automated BioContainers addition for bioconductor-rtnduals |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtnsurvival |
shpc-registry automated BioContainers addition for bioconductor-rtnsurvival |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtopper |
shpc-registry automated BioContainers addition for bioconductor-rtopper |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-rtpca |
shpc-registry automated BioContainers addition for bioconductor-rtpca |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtracklayer |
shpc-registry automated BioContainers addition for bioconductor-rtracklayer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtreemix |
shpc-registry automated BioContainers addition for bioconductor-rtreemix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtrm |
shpc-registry automated BioContainers addition for bioconductor-rtrm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtrmui |
shpc-registry automated BioContainers addition for bioconductor-rtrmui |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtu34.db |
shpc-registry automated BioContainers addition for bioconductor-rtu34.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtu34cdf |
shpc-registry automated BioContainers addition for bioconductor-rtu34cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rtu34probe |
shpc-registry automated BioContainers addition for bioconductor-rtu34probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-runibic |
shpc-registry automated BioContainers addition for bioconductor-runibic |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ruvcorr |
shpc-registry automated BioContainers addition for bioconductor-ruvcorr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ruvnormalize |
shpc-registry automated BioContainers addition for bioconductor-ruvnormalize |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ruvnormalizedata |
shpc-registry automated BioContainers addition for bioconductor-ruvnormalizedata |
x86_64-conda-linux-gnu-gfortran.bin, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ruvseq |
shpc-registry automated BioContainers addition for bioconductor-ruvseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rvisdiff |
singularity registry hpc automated addition for bioconductor-rvisdiff |
pcre2posix_test, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rvs |
shpc-registry automated BioContainers addition for bioconductor-rvs |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-rwgcod.db |
shpc-registry automated BioContainers addition for bioconductor-rwgcod.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-rwikipathways |
shpc-registry automated BioContainers addition for bioconductor-rwikipathways |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-s4arrays |
singularity registry hpc automated addition for bioconductor-s4arrays |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-s4vectors |
shpc-registry automated BioContainers addition for bioconductor-s4vectors |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-safe |
shpc-registry automated BioContainers addition for bioconductor-safe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sagenhaft |
shpc-registry automated BioContainers addition for bioconductor-sagenhaft |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sagx |
shpc-registry automated BioContainers addition for bioconductor-sagx |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-saigegds |
shpc-registry automated BioContainers addition for bioconductor-saigegds |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-samexplorer |
shpc-registry automated BioContainers addition for bioconductor-samexplorer |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sampleclassifier |
shpc-registry automated BioContainers addition for bioconductor-sampleclassifier |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sampleclassifierdata |
shpc-registry automated BioContainers addition for bioconductor-sampleclassifierdata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-samspectral |
shpc-registry automated BioContainers addition for bioconductor-samspectral |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sangeranalyser |
shpc-registry automated BioContainers addition for bioconductor-sangeranalyser |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sangerseqr |
shpc-registry automated BioContainers addition for bioconductor-sangerseqr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-santa |
shpc-registry automated BioContainers addition for bioconductor-santa |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sapfinder |
shpc-registry automated BioContainers addition for bioconductor-sapfinder |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sarc |
singularity registry hpc automated addition for bioconductor-sarc |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sarks |
shpc-registry automated BioContainers addition for bioconductor-sarks |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-saturn |
shpc-registry automated BioContainers addition for bioconductor-saturn |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-saureuscdf |
shpc-registry automated BioContainers addition for bioconductor-saureuscdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-saureusprobe |
shpc-registry automated BioContainers addition for bioconductor-saureusprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-savr |
shpc-registry automated BioContainers addition for bioconductor-savr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sbgnview.data |
shpc-registry automated BioContainers addition for bioconductor-sbgnview.data |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sbgnview |
shpc-registry automated BioContainers addition for bioconductor-sbgnview |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sbmlr |
shpc-registry automated BioContainers addition for bioconductor-sbmlr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sc3-scripts |
shpc-registry automated BioContainers addition for bioconductor-sc3-scripts |
bioconductor-sc3-scripts-post-install-tests.bats, bioconductor-sc3-scripts-post-install-tests.sh, bioconductor-scater-scripts-post-install-tests.bats, bioconductor-scater-scripts-post-install-tests.sh, bioconductor-singlecellexperiment-scripts-post-install-tests.sh, sc3-sc3-calc-biology.R, sc3-sc3-calc-consens.R, sc3-sc3-calc-dists.R, sc3-sc3-calc-transfs.R, sc3-sc3-estimate-k.R, sc3-sc3-kmeans.R, sc3-sc3-prepare.R, scater-calculate-cpm.R, scater-calculate-qc-metrics.R, scater-extract-qc-metric.R, scater-filter.R, scater-is-outlier.R, scater-normalize.R, scater-plot-reduced-dim.R, scater-run-pca.R, scater-run-tsne.R, singlecellexperiment-create-single-cell-experiment.R, singlecellexperiment-get-random-cells.R, singlecellexperiment-get-random-genes.R, conda_build.sh, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sc3 |
shpc-registry automated BioContainers addition for bioconductor-sc3 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scale4c |
shpc-registry automated BioContainers addition for bioconductor-scale4c |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scaledmatrix |
shpc-registry automated BioContainers addition for bioconductor-scaledmatrix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scalign |
shpc-registry automated BioContainers addition for bioconductor-scalign |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scan.upc |
shpc-registry automated BioContainers addition for bioconductor-scan.upc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scanmir |
shpc-registry automated BioContainers addition for bioconductor-scanmir |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-scanmirapp |
shpc-registry automated BioContainers addition for bioconductor-scanmirapp |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-scanmirdata |
shpc-registry automated BioContainers addition for bioconductor-scanmirdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scannotatr |
shpc-registry automated BioContainers addition for bioconductor-scannotatr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scannotatr.models |
shpc-registry automated BioContainers addition for bioconductor-scannotatr.models |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scanvis |
shpc-registry automated BioContainers addition for bioconductor-scanvis |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scarray |
shpc-registry automated BioContainers addition for bioconductor-scarray |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scarray.sat |
singularity registry hpc automated addition for bioconductor-scarray.sat |
geosop, geos-config, hb-info, tjbench, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scatac.explorer |
shpc-registry automated BioContainers addition for bioconductor-scatac.explorer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scate |
shpc-registry automated BioContainers addition for bioconductor-scate |
xgboost |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scatedata |
shpc-registry automated BioContainers addition for bioconductor-scatedata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scater-scripts |
shpc-registry automated BioContainers addition for bioconductor-scater-scripts |
bioconductor-scater-scripts-post-install-tests.bats, bioconductor-scater-scripts-post-install-tests.sh, bioconductor-singlecellexperiment-scripts-post-install-tests.sh, scater-calculate-cpm.R, scater-calculate-qc-metrics.R, scater-extract-qc-metric.R, scater-filter.R, scater-is-outlier.R, scater-normalize.R, scater-plot-reduced-dim.R, scater-run-pca.R, scater-run-tsne.R, singlecellexperiment-create-single-cell-experiment.R, singlecellexperiment-get-random-cells.R, singlecellexperiment-get-random-genes.R, conda_build.sh, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scater |
shpc-registry automated BioContainers addition for bioconductor-scater |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scatterhatch |
shpc-registry automated BioContainers addition for bioconductor-scatterhatch |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scbfa |
shpc-registry automated BioContainers addition for bioconductor-scbfa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scbn |
shpc-registry automated BioContainers addition for bioconductor-scbn |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scbubbletree |
singularity registry hpc automated addition for bioconductor-scbubbletree |
geosop, geos-config, glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sccb2 |
shpc-registry automated BioContainers addition for bioconductor-sccb2 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scclassifr |
shpc-registry automated BioContainers addition for bioconductor-scclassifr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scclassify |
shpc-registry automated BioContainers addition for bioconductor-scclassify |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sccomp |
singularity registry hpc automated addition for bioconductor-sccomp |
geosop, geos-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scdataviz |
shpc-registry automated BioContainers addition for bioconductor-scdataviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scdblfinder |
shpc-registry automated BioContainers addition for bioconductor-scdblfinder |
xgboost |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scdd |
shpc-registry automated BioContainers addition for bioconductor-scdd |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scddboost |
singularity registry hpc automated addition for bioconductor-scddboost |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scde |
shpc-registry automated BioContainers addition for bioconductor-scde |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scdesign3 |
singularity registry hpc automated addition for bioconductor-scdesign3 |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scds |
shpc-registry automated BioContainers addition for bioconductor-scds |
xgboost, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scfa |
shpc-registry automated BioContainers addition for bioconductor-scfa |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scfeaturefilter |
shpc-registry automated BioContainers addition for bioconductor-scfeaturefilter |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scfeatures |
singularity registry hpc automated addition for bioconductor-scfeatures |
geosop, x86_64-conda-linux-gnu-pkg-config, geos-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, hb-info, dvipdf, eps2eps, gs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scfind |
shpc-registry automated BioContainers addition for bioconductor-scfind |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scgps |
shpc-registry automated BioContainers addition for bioconductor-scgps |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-schex |
shpc-registry automated BioContainers addition for bioconductor-schex |
testepsg, gdal_create, pdfsig, pg_standby, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach |
|
GITHUB
|
quay.io/biocontainers/bioconductor-schot |
shpc-registry automated BioContainers addition for bioconductor-schot |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scider |
singularity registry hpc automated addition for bioconductor-scider |
bsdunzip, gdal_footprint, minigzip, minizip, protoc-24.4.0, sozip, h5fuse.sh, pg_amcheck, pcre2posix_test, gdal_create, pdfsig, bsdcat, bsdcpio, bsdtar, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pdfattach, pg_verifybackup, projsync, gdal-config, gdal_contour, gdal_grid, gdal_rasterize |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scifer |
singularity registry hpc automated addition for bioconductor-scifer |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, pandoc, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scisi |
shpc-registry automated BioContainers addition for bioconductor-scisi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sclcbam |
shpc-registry automated BioContainers addition for bioconductor-sclcbam |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scmageck |
shpc-registry automated BioContainers addition for bioconductor-scmageck |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scmap |
shpc-registry automated BioContainers addition for bioconductor-scmap |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scmerge |
shpc-registry automated BioContainers addition for bioconductor-scmerge |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scmeth |
shpc-registry automated BioContainers addition for bioconductor-scmeth |
pandoc-citeproc, pandoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scmultiome |
singularity registry hpc automated addition for bioconductor-scmultiome |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scnorm |
shpc-registry automated BioContainers addition for bioconductor-scnorm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scone |
shpc-registry automated BioContainers addition for bioconductor-scone |
f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, gio-launch-desktop |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sconify |
shpc-registry automated BioContainers addition for bioconductor-sconify |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scope |
shpc-registry automated BioContainers addition for bioconductor-scope |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scoreinvhap |
shpc-registry automated BioContainers addition for bioconductor-scoreinvhap |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scp |
shpc-registry automated BioContainers addition for bioconductor-scp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scpca |
shpc-registry automated BioContainers addition for bioconductor-scpca |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scpdata |
shpc-registry automated BioContainers addition for bioconductor-scpdata |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scpipe |
shpc-registry automated BioContainers addition for bioconductor-scpipe |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scran |
shpc-registry automated BioContainers addition for bioconductor-scran |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-screclassify |
shpc-registry automated BioContainers addition for bioconductor-screclassify |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-screcover |
shpc-registry automated BioContainers addition for bioconductor-screcover |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-screencounter |
singularity registry hpc automated addition for bioconductor-screencounter |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-screenr |
singularity registry hpc automated addition for bioconductor-screenr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-screpertoire |
shpc-registry automated BioContainers addition for bioconductor-screpertoire |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scrnaseq |
shpc-registry automated BioContainers addition for bioconductor-scrnaseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scrnaseqapp |
singularity registry hpc automated addition for bioconductor-scrnaseqapp |
h5delete, geosop, aec, geos-config, hb-info, tjbench, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, h5clear, h5format_convert, h5watch |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scruff |
shpc-registry automated BioContainers addition for bioconductor-scruff |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scry |
shpc-registry automated BioContainers addition for bioconductor-scry |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scshapes |
shpc-registry automated BioContainers addition for bioconductor-scshapes |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scsr |
shpc-registry automated BioContainers addition for bioconductor-scsr |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sctensor |
shpc-registry automated BioContainers addition for bioconductor-sctensor |
testepsg, gdal_create, pdfsig, pg_standby, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sctgif |
shpc-registry automated BioContainers addition for bioconductor-sctgif |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach, applygeo |
|
GITHUB
|
quay.io/biocontainers/bioconductor-scthi.data |
shpc-registry automated BioContainers addition for bioconductor-scthi.data |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scthi |
shpc-registry automated BioContainers addition for bioconductor-scthi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sctreeviz |
shpc-registry automated BioContainers addition for bioconductor-sctreeviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scuttle |
shpc-registry automated BioContainers addition for bioconductor-scuttle |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-scvir |
singularity registry hpc automated addition for bioconductor-scvir |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sdams |
shpc-registry automated BioContainers addition for bioconductor-sdams |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sechm |
shpc-registry automated BioContainers addition for bioconductor-sechm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-segmenter |
shpc-registry automated BioContainers addition for bioconductor-segmenter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-segmentseq |
shpc-registry automated BioContainers addition for bioconductor-segmentseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-selectksigs |
shpc-registry automated BioContainers addition for bioconductor-selectksigs |
jags |
|
GITHUB
|
quay.io/biocontainers/bioconductor-selex |
shpc-registry automated BioContainers addition for bioconductor-selex |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bioconductor-semdist |
shpc-registry automated BioContainers addition for bioconductor-semdist |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-semisup |
shpc-registry automated BioContainers addition for bioconductor-semisup |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sepa |
shpc-registry automated BioContainers addition for bioconductor-sepa |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sepira |
shpc-registry automated BioContainers addition for bioconductor-sepira |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seq.hotspot |
singularity registry hpc automated addition for bioconductor-seq.hotspot |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seq2pathway.data |
shpc-registry automated BioContainers addition for bioconductor-seq2pathway.data |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-seq2pathway |
shpc-registry automated BioContainers addition for bioconductor-seq2pathway |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqarchr |
singularity registry hpc automated addition for bioconductor-seqarchr |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqarchrplus |
singularity registry hpc automated addition for bioconductor-seqarchrplus |
f2py3.11, hb-info, tjbench, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqarray |
shpc-registry automated BioContainers addition for bioconductor-seqarray |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqbias |
shpc-registry automated BioContainers addition for bioconductor-seqbias |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqc |
shpc-registry automated BioContainers addition for bioconductor-seqc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqcat |
shpc-registry automated BioContainers addition for bioconductor-seqcat |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqcna.annot |
shpc-registry automated BioContainers addition for bioconductor-seqcna.annot |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqcna |
shpc-registry automated BioContainers addition for bioconductor-seqcna |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqcombo |
shpc-registry automated BioContainers addition for bioconductor-seqcombo |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqgate |
shpc-registry automated BioContainers addition for bioconductor-seqgate |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqgsea |
shpc-registry automated BioContainers addition for bioconductor-seqgsea |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqlogo |
shpc-registry automated BioContainers addition for bioconductor-seqlogo |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqpattern |
shpc-registry automated BioContainers addition for bioconductor-seqpattern |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqplots |
shpc-registry automated BioContainers addition for bioconductor-seqplots |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqsetvis |
shpc-registry automated BioContainers addition for bioconductor-seqsetvis |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqsqc |
shpc-registry automated BioContainers addition for bioconductor-seqsqc |
pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqtools |
shpc-registry automated BioContainers addition for bioconductor-seqtools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-seqvartools |
shpc-registry automated BioContainers addition for bioconductor-seqvartools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-serumstimulation |
shpc-registry automated BioContainers addition for bioconductor-serumstimulation |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sesame |
shpc-registry automated BioContainers addition for bioconductor-sesame |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sesamedata |
shpc-registry automated BioContainers addition for bioconductor-sesamedata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-setools |
shpc-registry automated BioContainers addition for bioconductor-setools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sevenbridges |
shpc-registry automated BioContainers addition for bioconductor-sevenbridges |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sevenc |
shpc-registry automated BioContainers addition for bioconductor-sevenc |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-seventygenedata |
shpc-registry automated BioContainers addition for bioconductor-seventygenedata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sfedata |
singularity registry hpc automated addition for bioconductor-sfedata |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sgcp |
singularity registry hpc automated addition for bioconductor-sgcp |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sgseq |
shpc-registry automated BioContainers addition for bioconductor-sgseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sharedobject |
shpc-registry automated BioContainers addition for bioconductor-sharedobject |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-shdz.db |
shpc-registry automated BioContainers addition for bioconductor-shdz.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-shinyepico |
shpc-registry automated BioContainers addition for bioconductor-shinyepico |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-shinymethyl |
shpc-registry automated BioContainers addition for bioconductor-shinymethyl |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-shinymethyldata |
shpc-registry automated BioContainers addition for bioconductor-shinymethyldata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-shinytandem |
shpc-registry automated BioContainers addition for bioconductor-shinytandem |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-shortread |
shpc-registry automated BioContainers addition for bioconductor-shortread |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-siamcat |
shpc-registry automated BioContainers addition for bioconductor-siamcat |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sictools |
shpc-registry automated BioContainers addition for bioconductor-sictools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sift.hsapiens.dbsnp132 |
shpc-registry automated BioContainers addition for bioconductor-sift.hsapiens.dbsnp132 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sift.hsapiens.dbsnp137 |
shpc-registry automated BioContainers addition for bioconductor-sift.hsapiens.dbsnp137 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sigar |
shpc-registry automated BioContainers addition for bioconductor-sigar |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sigcheck |
shpc-registry automated BioContainers addition for bioconductor-sigcheck |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sigfeature |
shpc-registry automated BioContainers addition for bioconductor-sigfeature |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sigfuge |
shpc-registry automated BioContainers addition for bioconductor-sigfuge |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-siggenes |
shpc-registry automated BioContainers addition for bioconductor-siggenes |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sights |
shpc-registry automated BioContainers addition for bioconductor-sights |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-signaturesearch |
shpc-registry automated BioContainers addition for bioconductor-signaturesearch |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-signaturesearchdata |
shpc-registry automated BioContainers addition for bioconductor-signaturesearchdata |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-signer |
shpc-registry automated BioContainers addition for bioconductor-signer |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-signet |
shpc-registry automated BioContainers addition for bioconductor-signet |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-signifinder |
singularity registry hpc automated addition for bioconductor-signifinder |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sigpathway |
shpc-registry automated BioContainers addition for bioconductor-sigpathway |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sigspack |
shpc-registry automated BioContainers addition for bioconductor-sigspack |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sigsquared |
shpc-registry automated BioContainers addition for bioconductor-sigsquared |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-silva128.1mgdb |
shpc-registry automated BioContainers addition for bioconductor-silva128.1mgdb |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sim |
shpc-registry automated BioContainers addition for bioconductor-sim |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-simat |
shpc-registry automated BioContainers addition for bioconductor-simat |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-simbenchdata |
shpc-registry automated BioContainers addition for bioconductor-simbenchdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-simbindprofiles |
shpc-registry automated BioContainers addition for bioconductor-simbindprofiles |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-simbu |
singularity registry hpc automated addition for bioconductor-simbu |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-simd |
shpc-registry automated BioContainers addition for bioconductor-simd |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-simffpe |
shpc-registry automated BioContainers addition for bioconductor-simffpe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-similarpeak |
shpc-registry automated BioContainers addition for bioconductor-similarpeak |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-simlr |
shpc-registry automated BioContainers addition for bioconductor-simlr |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv, c89 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-simona |
singularity registry hpc automated addition for bioconductor-simona |
pcre2posix_test, hb-info, glpsol, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-simpintlists |
shpc-registry automated BioContainers addition for bioconductor-simpintlists |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-simpleaffy |
shpc-registry automated BioContainers addition for bioconductor-simpleaffy |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-simpleseg |
singularity registry hpc automated addition for bioconductor-simpleseg |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, dap-config, dap-config-pkgconfig, gdal-config, gdal_contour, gdal_grid, gdal_rasterize, gdal_translate, gdaladdo |
|
GITHUB
|
quay.io/biocontainers/bioconductor-simplifyenrichment |
shpc-registry automated BioContainers addition for bioconductor-simplifyenrichment |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-simulatorz |
shpc-registry automated BioContainers addition for bioconductor-simulatorz |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sincell |
shpc-registry automated BioContainers addition for bioconductor-sincell |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-single.mtec.transcriptomes |
shpc-registry automated BioContainers addition for bioconductor-single.mtec.transcriptomes |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-singlecellexperiment-scripts |
shpc-registry automated BioContainers addition for bioconductor-singlecellexperiment-scripts |
bioconductor-singlecellexperiment-scripts-post-install-tests.sh, singlecellexperiment-create-single-cell-experiment.R, singlecellexperiment-get-random-cells.R, singlecellexperiment-get-random-genes.R, build_env_setup.sh, conda_build.sh, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-singlecellexperiment |
shpc-registry automated BioContainers addition for bioconductor-singlecellexperiment |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-singlecellmultimodal |
shpc-registry automated BioContainers addition for bioconductor-singlecellmultimodal |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-singlecellsignalr |
shpc-registry automated BioContainers addition for bioconductor-singlecellsignalr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-singlecelltk |
shpc-registry automated BioContainers addition for bioconductor-singlecelltk |
xgboost, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display |
|
GITHUB
|
quay.io/biocontainers/bioconductor-singlemoleculefootprinting |
shpc-registry automated BioContainers addition for bioconductor-singlemoleculefootprinting |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-singlemoleculefootprintingdata |
shpc-registry automated BioContainers addition for bioconductor-singlemoleculefootprintingdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-singler |
shpc-registry automated BioContainers addition for bioconductor-singler |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-singscore |
shpc-registry automated BioContainers addition for bioconductor-singscore |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sipsic |
singularity registry hpc automated addition for bioconductor-sipsic |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sispa |
shpc-registry automated BioContainers addition for bioconductor-sispa |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sitadela |
shpc-registry automated BioContainers addition for bioconductor-sitadela |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sitepath |
shpc-registry automated BioContainers addition for bioconductor-sitepath |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sizepower |
shpc-registry automated BioContainers addition for bioconductor-sizepower |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-skewr |
shpc-registry automated BioContainers addition for bioconductor-skewr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-slalom |
shpc-registry automated BioContainers addition for bioconductor-slalom |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-slgi |
shpc-registry automated BioContainers addition for bioconductor-slgi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-slingshot |
shpc-registry automated BioContainers addition for bioconductor-slingshot |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-slinky |
shpc-registry automated BioContainers addition for bioconductor-slinky |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-slqpcr |
shpc-registry automated BioContainers addition for bioconductor-slqpcr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-smad |
shpc-registry automated BioContainers addition for bioconductor-smad |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-smap |
shpc-registry automated BioContainers addition for bioconductor-smap |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-smite |
shpc-registry automated BioContainers addition for bioconductor-smite |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-smokingmouse |
singularity registry hpc automated addition for bioconductor-smokingmouse |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-snadata |
shpc-registry automated BioContainers addition for bioconductor-snadata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snagee |
shpc-registry automated BioContainers addition for bioconductor-snagee |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snageedata |
shpc-registry automated BioContainers addition for bioconductor-snageedata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snapcgh |
shpc-registry automated BioContainers addition for bioconductor-snapcgh |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snapcount |
shpc-registry automated BioContainers addition for bioconductor-snapcount |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snifter |
shpc-registry automated BioContainers addition for bioconductor-snifter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snm |
shpc-registry automated BioContainers addition for bioconductor-snm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snpchip |
shpc-registry automated BioContainers addition for bioconductor-snpchip |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-snpediar |
shpc-registry automated BioContainers addition for bioconductor-snpediar |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-snphood |
shpc-registry automated BioContainers addition for bioconductor-snphood |
my_print_defaults, mysql_config, perror, wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-snphooddata |
shpc-registry automated BioContainers addition for bioconductor-snphooddata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp.20101109 |
shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp.20101109 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp.20120608 |
shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp.20120608 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp141.grch38 |
shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp141.grch38 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp142.grch37 |
shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp142.grch37 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp144.grch37 |
shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp144.grch37 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp144.grch38 |
shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp144.grch38 |
x86_64-conda-linux-gnu-gfortran.bin, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp149.grch38 |
shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp149.grch38 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp150.grch38 |
shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp150.grch38 |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snplocs.hsapiens.dbsnp151.grch38 |
shpc-registry automated BioContainers addition for bioconductor-snplocs.hsapiens.dbsnp151.grch38 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-snprelate |
shpc-registry automated BioContainers addition for bioconductor-snprelate |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-snpstats |
shpc-registry automated BioContainers addition for bioconductor-snpstats |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-soggi |
shpc-registry automated BioContainers addition for bioconductor-soggi |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sojourner |
shpc-registry automated BioContainers addition for bioconductor-sojourner |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach, applygeo |
|
GITHUB
|
quay.io/biocontainers/bioconductor-somascan.db |
singularity registry hpc automated addition for bioconductor-somascan.db |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/bioconductor-somaticadata |
shpc-registry automated BioContainers addition for bioconductor-somaticadata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-somaticcanceralterations |
shpc-registry automated BioContainers addition for bioconductor-somaticcanceralterations |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-somaticsignatures |
shpc-registry automated BioContainers addition for bioconductor-somaticsignatures |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-somnibus |
shpc-registry automated BioContainers addition for bioconductor-somnibus |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-soybeancdf |
shpc-registry automated BioContainers addition for bioconductor-soybeancdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-soybeanprobe |
shpc-registry automated BioContainers addition for bioconductor-soybeanprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spacepac |
shpc-registry automated BioContainers addition for bioconductor-spacepac |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spaniel |
shpc-registry automated BioContainers addition for bioconductor-spaniel |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sparrow |
shpc-registry automated BioContainers addition for bioconductor-sparrow |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sparsearray |
singularity registry hpc automated addition for bioconductor-sparsearray |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sparsedossa |
shpc-registry automated BioContainers addition for bioconductor-sparsedossa |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sparsematrixstats |
shpc-registry automated BioContainers addition for bioconductor-sparsematrixstats |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sparsenetgls |
shpc-registry automated BioContainers addition for bioconductor-sparsenetgls |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sparsesignatures |
shpc-registry automated BioContainers addition for bioconductor-sparsesignatures |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spasim |
singularity registry hpc automated addition for bioconductor-spasim |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spatialcpie |
shpc-registry automated BioContainers addition for bioconductor-spatialcpie |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spatialdatasets |
singularity registry hpc automated addition for bioconductor-spatialdatasets |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, display, identify, import, magick, magick-script, mogrify, montage, convert, pkg-config, pkg-config.bin, stream, compare |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spatialde |
shpc-registry automated BioContainers addition for bioconductor-spatialde |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spatialdecon |
shpc-registry automated BioContainers addition for bioconductor-spatialdecon |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spatialdmelxsim |
shpc-registry automated BioContainers addition for bioconductor-spatialdmelxsim |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spatialexperiment |
shpc-registry automated BioContainers addition for bioconductor-spatialexperiment |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spatialfeatureexperiment |
singularity registry hpc automated addition for bioconductor-spatialfeatureexperiment |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, udunits2, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, dap-config, dap-config-pkgconfig, gdal-config, gdal_contour, gdal_grid, gdal_rasterize, gdal_translate |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spatialheatmap |
shpc-registry automated BioContainers addition for bioconductor-spatialheatmap |
aomdec, aomenc, ffmpeg, ffprobe, h264dec, h264enc, lame, vpxdec, vpxenc, x264, x265, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv, psktool |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spatiallibd |
shpc-registry automated BioContainers addition for bioconductor-spatiallibd |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spatialomicsoverlay |
singularity registry hpc automated addition for bioconductor-spatialomicsoverlay |
jwebserver, geosop, x86_64-conda-linux-gnu-pkg-config, geos-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, jpackage, hb-info, f2py3.11, dvipdf |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spatzie |
shpc-registry automated BioContainers addition for bioconductor-spatzie |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-speckle |
singularity registry hpc automated addition for bioconductor-speckle |
geosop, geos-config, hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-specl |
shpc-registry automated BioContainers addition for bioconductor-specl |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-specond |
shpc-registry automated BioContainers addition for bioconductor-specond |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spectra |
shpc-registry automated BioContainers addition for bioconductor-spectra |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spectraltad |
shpc-registry automated BioContainers addition for bioconductor-spectraltad |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spem |
shpc-registry automated BioContainers addition for bioconductor-spem |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spia |
shpc-registry automated BioContainers addition for bioconductor-spia |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spiat |
singularity registry hpc automated addition for bioconductor-spiat |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, dap-config, dap-config-pkgconfig, gdal-config, gdal_contour, gdal_grid, gdal_rasterize, gdal_translate, gdaladdo |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spicyr |
shpc-registry automated BioContainers addition for bioconductor-spicyr |
testepsg, gdal_create, pdfsig, pg_standby, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spidermir |
shpc-registry automated BioContainers addition for bioconductor-spidermir |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spikein |
shpc-registry automated BioContainers addition for bioconductor-spikein |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spikeinsubset |
shpc-registry automated BioContainers addition for bioconductor-spikeinsubset |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spikeli |
shpc-registry automated BioContainers addition for bioconductor-spikeli |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spiky |
shpc-registry automated BioContainers addition for bioconductor-spiky |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spktools |
shpc-registry automated BioContainers addition for bioconductor-spktools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-splatter |
shpc-registry automated BioContainers addition for bioconductor-splatter |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-splicegear |
shpc-registry automated BioContainers addition for bioconductor-splicegear |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-splicer |
shpc-registry automated BioContainers addition for bioconductor-splicer |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-splicesites |
shpc-registry automated BioContainers addition for bioconductor-splicesites |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-splicewiz |
singularity registry hpc automated addition for bioconductor-splicewiz |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-splicingfactory |
shpc-registry automated BioContainers addition for bioconductor-splicingfactory |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-splicinggraphs |
shpc-registry automated BioContainers addition for bioconductor-splicinggraphs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-splinetimer |
shpc-registry automated BioContainers addition for bioconductor-splinetimer |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-splinter |
shpc-registry automated BioContainers addition for bioconductor-splinter |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-splots |
shpc-registry automated BioContainers addition for bioconductor-splots |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sponge |
shpc-registry automated BioContainers addition for bioconductor-sponge |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spotclean |
singularity registry hpc automated addition for bioconductor-spotclean |
geosop, geos-config, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spotlight |
singularity registry hpc automated addition for bioconductor-spotlight |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spotsegmentation |
shpc-registry automated BioContainers addition for bioconductor-spotsegmentation |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-spqn |
shpc-registry automated BioContainers addition for bioconductor-spqn |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spqndata |
shpc-registry automated BioContainers addition for bioconductor-spqndata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-spsimseq |
shpc-registry automated BioContainers addition for bioconductor-spsimseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sqldataframe |
shpc-registry automated BioContainers addition for bioconductor-sqldataframe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-squadd |
shpc-registry automated BioContainers addition for bioconductor-squadd |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sracipe |
shpc-registry automated BioContainers addition for bioconductor-sracipe |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sradb |
shpc-registry automated BioContainers addition for bioconductor-sradb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-srap |
shpc-registry automated BioContainers addition for bioconductor-srap |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-srgnet |
shpc-registry automated BioContainers addition for bioconductor-srgnet |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-srnadiff |
shpc-registry automated BioContainers addition for bioconductor-srnadiff |
pandoc-citeproc, pandoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sscore |
shpc-registry automated BioContainers addition for bioconductor-sscore |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sscu |
shpc-registry automated BioContainers addition for bioconductor-sscu |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sseq |
shpc-registry automated BioContainers addition for bioconductor-sseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ssize |
shpc-registry automated BioContainers addition for bioconductor-ssize |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ssnappy |
singularity registry hpc automated addition for bioconductor-ssnappy |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sspa |
shpc-registry automated BioContainers addition for bioconductor-sspa |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sspaths |
shpc-registry automated BioContainers addition for bioconductor-sspaths |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ssrch |
shpc-registry automated BioContainers addition for bioconductor-ssrch |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ssviz |
shpc-registry automated BioContainers addition for bioconductor-ssviz |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-stager |
shpc-registry automated BioContainers addition for bioconductor-stager |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-stan |
shpc-registry automated BioContainers addition for bioconductor-stan |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-standr |
singularity registry hpc automated addition for bioconductor-standr |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-starank |
shpc-registry automated BioContainers addition for bioconductor-starank |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-starbiotrek |
shpc-registry automated BioContainers addition for bioconductor-starbiotrek |
idn2, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-starr |
shpc-registry automated BioContainers addition for bioconductor-starr |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-stategra |
shpc-registry automated BioContainers addition for bioconductor-stategra |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-statial |
singularity registry hpc automated addition for bioconductor-statial |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, udunits2, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, dap-config, dap-config-pkgconfig, gdal-config, gdal_contour, gdal_grid, gdal_rasterize, gdal_translate |
|
GITHUB
|
quay.io/biocontainers/bioconductor-stattarget |
shpc-registry automated BioContainers addition for bioconductor-stattarget |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-stdeconvolve |
singularity registry hpc automated addition for bioconductor-stdeconvolve |
jpackage, cups-config, ippeveprinter, ipptool, numba, pycc, tqdm, f2py3.10, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug |
|
GITHUB
|
quay.io/biocontainers/bioconductor-stemhypoxia |
shpc-registry automated BioContainers addition for bioconductor-stemhypoxia |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-stepnorm |
shpc-registry automated BioContainers addition for bioconductor-stepnorm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-stexampledata |
shpc-registry automated BioContainers addition for bioconductor-stexampledata |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-stjoincount |
singularity registry hpc automated addition for bioconductor-stjoincount |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, udunits2, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, dap-config, dap-config-pkgconfig, gdal-config, gdal_contour, gdal_grid, gdal_rasterize, gdal_translate |
|
GITHUB
|
quay.io/biocontainers/bioconductor-stjudem |
shpc-registry automated BioContainers addition for bioconductor-stjudem |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-strandcheckr |
shpc-registry automated BioContainers addition for bioconductor-strandcheckr |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-streamer |
shpc-registry automated BioContainers addition for bioconductor-streamer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-stringdb |
shpc-registry automated BioContainers addition for bioconductor-stringdb |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-stroma4 |
shpc-registry automated BioContainers addition for bioconductor-stroma4 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-struct |
shpc-registry automated BioContainers addition for bioconductor-struct |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-structstrings |
shpc-registry automated BioContainers addition for bioconductor-structstrings |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-structtoolbox |
shpc-registry automated BioContainers addition for bioconductor-structtoolbox |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach, applygeo |
|
GITHUB
|
quay.io/biocontainers/bioconductor-structuralvariantannotation |
shpc-registry automated BioContainers addition for bioconductor-structuralvariantannotation |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-subcellbarcode |
shpc-registry automated BioContainers addition for bioconductor-subcellbarcode |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-subseq |
shpc-registry automated BioContainers addition for bioconductor-subseq |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sugarcanecdf |
shpc-registry automated BioContainers addition for bioconductor-sugarcanecdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sugarcaneprobe |
shpc-registry automated BioContainers addition for bioconductor-sugarcaneprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-suitor |
singularity registry hpc automated addition for bioconductor-suitor |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-summarizedbenchmark |
shpc-registry automated BioContainers addition for bioconductor-summarizedbenchmark |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-summarizedexperiment |
shpc-registry automated BioContainers addition for bioconductor-summarizedexperiment |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-summix |
shpc-registry automated BioContainers addition for bioconductor-summix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-supersigs |
shpc-registry automated BioContainers addition for bioconductor-supersigs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-suprahex |
shpc-registry automated BioContainers addition for bioconductor-suprahex |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-surfaltr |
shpc-registry automated BioContainers addition for bioconductor-surfaltr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-survcomp |
shpc-registry automated BioContainers addition for bioconductor-survcomp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-survtype |
shpc-registry automated BioContainers addition for bioconductor-survtype |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-sushi |
shpc-registry automated BioContainers addition for bioconductor-sushi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-sva |
shpc-registry automated BioContainers addition for bioconductor-sva |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-svanumt |
shpc-registry automated BioContainers addition for bioconductor-svanumt |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-svaplsseq |
shpc-registry automated BioContainers addition for bioconductor-svaplsseq |
idn2, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-svaretro |
shpc-registry automated BioContainers addition for bioconductor-svaretro |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-svm2crm |
shpc-registry automated BioContainers addition for bioconductor-svm2crm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-svm2crmdata |
shpc-registry automated BioContainers addition for bioconductor-svm2crmdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-svmdo |
singularity registry hpc automated addition for bioconductor-svmdo |
git2, hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-swath2stats |
shpc-registry automated BioContainers addition for bioconductor-swath2stats |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-swathxtend |
shpc-registry automated BioContainers addition for bioconductor-swathxtend |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-swfdr |
shpc-registry automated BioContainers addition for bioconductor-swfdr |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-swimr |
shpc-registry automated BioContainers addition for bioconductor-swimr |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-switchbox |
shpc-registry automated BioContainers addition for bioconductor-switchbox |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-switchde |
shpc-registry automated BioContainers addition for bioconductor-switchde |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-synapsis |
shpc-registry automated BioContainers addition for bioconductor-synapsis |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/bioconductor-synapter |
shpc-registry automated BioContainers addition for bioconductor-synapter |
pandoc-citeproc, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-synapterdata |
shpc-registry automated BioContainers addition for bioconductor-synapterdata |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-synaptome.data |
shpc-registry automated BioContainers addition for bioconductor-synaptome.data |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-synaptome.db |
shpc-registry automated BioContainers addition for bioconductor-synaptome.db |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-synergyfinder |
shpc-registry automated BioContainers addition for bioconductor-synergyfinder |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-synextend |
shpc-registry automated BioContainers addition for bioconductor-synextend |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-synlet |
shpc-registry automated BioContainers addition for bioconductor-synlet |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-synmut |
shpc-registry automated BioContainers addition for bioconductor-synmut |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-syntenet |
singularity registry hpc automated addition for bioconductor-syntenet |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-systempiper |
shpc-registry automated BioContainers addition for bioconductor-systempiper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-systempiperdata |
shpc-registry automated BioContainers addition for bioconductor-systempiperdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-systempipeshiny |
shpc-registry automated BioContainers addition for bioconductor-systempipeshiny |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-systempipetools |
shpc-registry automated BioContainers addition for bioconductor-systempipetools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tabulamurisdata |
shpc-registry automated BioContainers addition for bioconductor-tabulamurisdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tabulamurissenisdata |
shpc-registry automated BioContainers addition for bioconductor-tabulamurissenisdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tadar |
singularity registry hpc automated addition for bioconductor-tadar |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tadcompare |
shpc-registry automated BioContainers addition for bioconductor-tadcompare |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tanggle |
shpc-registry automated BioContainers addition for bioconductor-tanggle |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tapseq |
shpc-registry automated BioContainers addition for bioconductor-tapseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-target |
shpc-registry automated BioContainers addition for bioconductor-target |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-targetdecoy |
shpc-registry automated BioContainers addition for bioconductor-targetdecoy |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-targetscan.hs.eg.db |
shpc-registry automated BioContainers addition for bioconductor-targetscan.hs.eg.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-targetscan.mm.eg.db |
shpc-registry automated BioContainers addition for bioconductor-targetscan.mm.eg.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-targetscore |
shpc-registry automated BioContainers addition for bioconductor-targetscore |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-targetscoredata |
shpc-registry automated BioContainers addition for bioconductor-targetscoredata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-targetsearch |
shpc-registry automated BioContainers addition for bioconductor-targetsearch |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/bioconductor-targetsearchdata |
shpc-registry automated BioContainers addition for bioconductor-targetsearchdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tarseqqc |
shpc-registry automated BioContainers addition for bioconductor-tarseqqc |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tartare |
shpc-registry automated BioContainers addition for bioconductor-tartare |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tbsignatureprofiler |
shpc-registry automated BioContainers addition for bioconductor-tbsignatureprofiler |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tbx20bamsubset |
shpc-registry automated BioContainers addition for bioconductor-tbx20bamsubset |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tcc |
shpc-registry automated BioContainers addition for bioconductor-tcc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tcgabiolinks |
shpc-registry automated BioContainers addition for bioconductor-tcgabiolinks |
wget |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tcgabiolinksgui.data |
shpc-registry automated BioContainers addition for bioconductor-tcgabiolinksgui.data |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tcgabiolinksgui |
shpc-registry automated BioContainers addition for bioconductor-tcgabiolinksgui |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tcgacrcmirna |
shpc-registry automated BioContainers addition for bioconductor-tcgacrcmirna |
x86_64-conda-linux-gnu-gfortran.bin, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tcgacrcmrna |
shpc-registry automated BioContainers addition for bioconductor-tcgacrcmrna |
x86_64-conda-linux-gnu-gfortran.bin, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tcgamethylation450k |
shpc-registry automated BioContainers addition for bioconductor-tcgamethylation450k |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tcgautils |
shpc-registry automated BioContainers addition for bioconductor-tcgautils |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tcgawgbsdata.hg19 |
shpc-registry automated BioContainers addition for bioconductor-tcgawgbsdata.hg19 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tcgaworkflowdata |
shpc-registry automated BioContainers addition for bioconductor-tcgaworkflowdata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tcseq |
shpc-registry automated BioContainers addition for bioconductor-tcseq |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tdaracne |
shpc-registry automated BioContainers addition for bioconductor-tdaracne |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tdbasedufe |
singularity registry hpc automated addition for bioconductor-tdbasedufe |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tdbasedufeadv |
singularity registry hpc automated addition for bioconductor-tdbasedufeadv |
hb-info, f2py3.11, tjbench, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tekrabber |
singularity registry hpc automated addition for bioconductor-tekrabber |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tenxbraindata |
shpc-registry automated BioContainers addition for bioconductor-tenxbraindata |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tenxbusdata |
shpc-registry automated BioContainers addition for bioconductor-tenxbusdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tenxio |
singularity registry hpc automated addition for bioconductor-tenxio |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tenxpbmcdata |
shpc-registry automated BioContainers addition for bioconductor-tenxpbmcdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tenxplore |
shpc-registry automated BioContainers addition for bioconductor-tenxplore |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tenxvisiumdata |
shpc-registry automated BioContainers addition for bioconductor-tenxvisiumdata |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-teqc |
shpc-registry automated BioContainers addition for bioconductor-teqc |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ternarynet |
shpc-registry automated BioContainers addition for bioconductor-ternarynet |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-terratcgadata |
singularity registry hpc automated addition for bioconductor-terratcgadata |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-test1cdf |
shpc-registry automated BioContainers addition for bioconductor-test1cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-test2cdf |
shpc-registry automated BioContainers addition for bioconductor-test2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-test3cdf |
shpc-registry automated BioContainers addition for bioconductor-test3cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-test3probe |
shpc-registry automated BioContainers addition for bioconductor-test3probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tfarm |
shpc-registry automated BioContainers addition for bioconductor-tfarm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tfbstools |
shpc-registry automated BioContainers addition for bioconductor-tfbstools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tfea.chip |
shpc-registry automated BioContainers addition for bioconductor-tfea.chip |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tfhaz |
shpc-registry automated BioContainers addition for bioconductor-tfhaz |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tfutils |
shpc-registry automated BioContainers addition for bioconductor-tfutils |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tidybulk |
shpc-registry automated BioContainers addition for bioconductor-tidybulk |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tidysinglecellexperiment |
shpc-registry automated BioContainers addition for bioconductor-tidysinglecellexperiment |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tidysummarizedexperiment |
shpc-registry automated BioContainers addition for bioconductor-tidysummarizedexperiment |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tigre |
shpc-registry automated BioContainers addition for bioconductor-tigre |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tiledbarray |
shpc-registry automated BioContainers addition for bioconductor-tiledbarray |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tilingarray |
shpc-registry automated BioContainers addition for bioconductor-tilingarray |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-timecourse |
shpc-registry automated BioContainers addition for bioconductor-timecourse |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-timecoursedata |
shpc-registry automated BioContainers addition for bioconductor-timecoursedata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-timeomics |
shpc-registry automated BioContainers addition for bioconductor-timeomics |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-timerquant |
shpc-registry automated BioContainers addition for bioconductor-timerquant |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-timescape |
shpc-registry automated BioContainers addition for bioconductor-timescape |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-timeseriesexperiment |
shpc-registry automated BioContainers addition for bioconductor-timeseriesexperiment |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-timirgen |
shpc-registry automated BioContainers addition for bioconductor-timirgen |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tin |
shpc-registry automated BioContainers addition for bioconductor-tin |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tinesath1cdf |
shpc-registry automated BioContainers addition for bioconductor-tinesath1cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tinesath1probe |
shpc-registry automated BioContainers addition for bioconductor-tinesath1probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tissueenrich |
shpc-registry automated BioContainers addition for bioconductor-tissueenrich |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tissuetreg |
shpc-registry automated BioContainers addition for bioconductor-tissuetreg |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-titancna |
shpc-registry automated BioContainers addition for bioconductor-titancna |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tkwidgets |
shpc-registry automated BioContainers addition for bioconductor-tkwidgets |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tloh |
shpc-registry automated BioContainers addition for bioconductor-tloh |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tmexplorer |
shpc-registry automated BioContainers addition for bioconductor-tmexplorer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tmixclust |
shpc-registry automated BioContainers addition for bioconductor-tmixclust |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tnbc.cms |
shpc-registry automated BioContainers addition for bioconductor-tnbc.cms |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tnt |
shpc-registry automated BioContainers addition for bioconductor-tnt |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-toast |
shpc-registry automated BioContainers addition for bioconductor-toast |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tofsims |
shpc-registry automated BioContainers addition for bioconductor-tofsims |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tofsimsdata |
shpc-registry automated BioContainers addition for bioconductor-tofsimsdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tomatocdf |
shpc-registry automated BioContainers addition for bioconductor-tomatocdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tomatoprobe |
shpc-registry automated BioContainers addition for bioconductor-tomatoprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tomoda |
shpc-registry automated BioContainers addition for bioconductor-tomoda |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tomoseqr |
singularity registry hpc automated addition for bioconductor-tomoseqr |
SvtAv1DecApp, SvtAv1EncApp, aomdec, aomenc, asn1Coding, asn1Decoding, asn1Parser, ffmpeg, ffprobe, h264dec, h264enc, lame, p11-kit, p11tool, trust, vpxdec, vpxenc, x264, x265, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv, psktool, sexp-conv, srptool, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script |
|
GITHUB
|
quay.io/biocontainers/bioconductor-topaseq |
shpc-registry automated BioContainers addition for bioconductor-topaseq |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-topconfects |
shpc-registry automated BioContainers addition for bioconductor-topconfects |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-topdownr |
shpc-registry automated BioContainers addition for bioconductor-topdownr |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-topdownrdata |
shpc-registry automated BioContainers addition for bioconductor-topdownrdata |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-topgo |
shpc-registry automated BioContainers addition for bioconductor-topgo |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-toxicogx |
shpc-registry automated BioContainers addition for bioconductor-toxicogx |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tpp |
shpc-registry automated BioContainers addition for bioconductor-tpp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tpp2d |
shpc-registry automated BioContainers addition for bioconductor-tpp2d |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tracktables |
shpc-registry automated BioContainers addition for bioconductor-tracktables |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-trackviewer |
shpc-registry automated BioContainers addition for bioconductor-trackviewer |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tradeseq |
shpc-registry automated BioContainers addition for bioconductor-tradeseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-trajectorygeometry |
shpc-registry automated BioContainers addition for bioconductor-trajectorygeometry |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-trajectoryutils |
shpc-registry automated BioContainers addition for bioconductor-trajectoryutils |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-transcriptogramer |
shpc-registry automated BioContainers addition for bioconductor-transcriptogramer |
giffilter, gifsponge, gifecho, gifinto, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/bioconductor-transcriptr |
shpc-registry automated BioContainers addition for bioconductor-transcriptr |
wget, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-transformgampoi |
shpc-registry automated BioContainers addition for bioconductor-transformgampoi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-transite |
shpc-registry automated BioContainers addition for bioconductor-transite |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-translatome |
shpc-registry automated BioContainers addition for bioconductor-translatome |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-transomics2cytoscape |
shpc-registry automated BioContainers addition for bioconductor-transomics2cytoscape |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, curve_keygen, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage |
|
GITHUB
|
quay.io/biocontainers/bioconductor-transview |
shpc-registry automated BioContainers addition for bioconductor-transview |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-trare |
shpc-registry automated BioContainers addition for bioconductor-trare |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-traser |
shpc-registry automated BioContainers addition for bioconductor-traser |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-traviz |
shpc-registry automated BioContainers addition for bioconductor-traviz |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-treeandleaf |
shpc-registry automated BioContainers addition for bioconductor-treeandleaf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-treeio |
shpc-registry automated BioContainers addition for bioconductor-treeio |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-treekor |
shpc-registry automated BioContainers addition for bioconductor-treekor |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-treesummarizedexperiment |
shpc-registry automated BioContainers addition for bioconductor-treesummarizedexperiment |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-treg |
singularity registry hpc automated addition for bioconductor-treg |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-trena |
shpc-registry automated BioContainers addition for bioconductor-trena |
xgboost, my_print_defaults, mysql_config, perror, pg_config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-trendy |
shpc-registry automated BioContainers addition for bioconductor-trendy |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tress |
shpc-registry automated BioContainers addition for bioconductor-tress |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-tricycle |
shpc-registry automated BioContainers addition for bioconductor-tricycle |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-triform |
shpc-registry automated BioContainers addition for bioconductor-triform |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-trigger |
shpc-registry automated BioContainers addition for bioconductor-trigger |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-trio |
shpc-registry automated BioContainers addition for bioconductor-trio |
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GITHUB
|
quay.io/biocontainers/bioconductor-triplex |
shpc-registry automated BioContainers addition for bioconductor-triplex |
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GITHUB
|
quay.io/biocontainers/bioconductor-tripr |
shpc-registry automated BioContainers addition for bioconductor-tripr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-trna |
shpc-registry automated BioContainers addition for bioconductor-trna |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-trnadbimport |
shpc-registry automated BioContainers addition for bioconductor-trnadbimport |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-trnascanimport |
shpc-registry automated BioContainers addition for bioconductor-trnascanimport |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tronco |
shpc-registry automated BioContainers addition for bioconductor-tronco |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tsar |
singularity registry hpc automated addition for bioconductor-tsar |
protoc-24.4.0, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pcre2posix_test, elasticurl, elasticurl_cpp, elastipubsub, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tscan |
shpc-registry automated BioContainers addition for bioconductor-tscan |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tscr |
shpc-registry automated BioContainers addition for bioconductor-tscr |
pandoc-server, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tspair |
shpc-registry automated BioContainers addition for bioconductor-tspair |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tsrchitect |
shpc-registry automated BioContainers addition for bioconductor-tsrchitect |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tssi |
shpc-registry automated BioContainers addition for bioconductor-tssi |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ttgsea |
shpc-registry automated BioContainers addition for bioconductor-ttgsea |
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GITHUB
|
quay.io/biocontainers/bioconductor-ttmap |
shpc-registry automated BioContainers addition for bioconductor-ttmap |
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GITHUB
|
quay.io/biocontainers/bioconductor-tuberculosis |
shpc-registry automated BioContainers addition for bioconductor-tuberculosis |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tumourmethdata |
singularity registry hpc automated addition for bioconductor-tumourmethdata |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tjbench, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-turbonorm |
shpc-registry automated BioContainers addition for bioconductor-turbonorm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-tvtb |
shpc-registry automated BioContainers addition for bioconductor-tvtb |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tweedeseq |
shpc-registry automated BioContainers addition for bioconductor-tweedeseq |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-tweedeseqcountdata |
shpc-registry automated BioContainers addition for bioconductor-tweedeseqcountdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-twilight |
shpc-registry automated BioContainers addition for bioconductor-twilight |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-twoddpcr |
shpc-registry automated BioContainers addition for bioconductor-twoddpcr |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txcutr |
shpc-registry automated BioContainers addition for bioconductor-txcutr |
|
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GITHUB
|
quay.io/biocontainers/bioconductor-txdb.btaurus.ucsc.bostau8.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.btaurus.ucsc.bostau8.refgene |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.btaurus.ucsc.bostau9.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.btaurus.ucsc.bostau9.refgene |
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GITHUB
|
quay.io/biocontainers/bioconductor-txdb.celegans.ucsc.ce11.ensgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.celegans.ucsc.ce11.ensgene |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.celegans.ucsc.ce11.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.celegans.ucsc.ce11.refgene |
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GITHUB
|
quay.io/biocontainers/bioconductor-txdb.celegans.ucsc.ce6.ensgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.celegans.ucsc.ce6.ensgene |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.drerio.ucsc.danrer10.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.drerio.ucsc.danrer10.refgene |
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GITHUB
|
quay.io/biocontainers/bioconductor-txdb.drerio.ucsc.danrer11.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.drerio.ucsc.danrer11.refgene |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.ggallus.ucsc.galgal4.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.ggallus.ucsc.galgal4.refgene |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.ggallus.ucsc.galgal5.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.ggallus.ucsc.galgal5.refgene |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.ggallus.ucsc.galgal6.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.ggallus.ucsc.galgal6.refgene |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.hsapiens.biomart.igis |
shpc-registry automated BioContainers addition for bioconductor-txdb.hsapiens.biomart.igis |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.hsapiens.ucsc.hg18.knowngene |
shpc-registry automated BioContainers addition for bioconductor-txdb.hsapiens.ucsc.hg18.knowngene |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.hsapiens.ucsc.hg19.knowngene |
shpc-registry automated BioContainers addition for bioconductor-txdb.hsapiens.ucsc.hg19.knowngene |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.hsapiens.ucsc.hg38.knowngene |
shpc-registry automated BioContainers addition for bioconductor-txdb.hsapiens.ucsc.hg38.knowngene |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.hsapiens.ucsc.hg38.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.hsapiens.ucsc.hg38.refgene |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.mmusculus.ucsc.mm10.ensgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.mmusculus.ucsc.mm10.ensgene |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.mmusculus.ucsc.mm39.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.mmusculus.ucsc.mm39.refgene |
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|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.mmusculus.ucsc.mm9.knowngene |
shpc-registry automated BioContainers addition for bioconductor-txdb.mmusculus.ucsc.mm9.knowngene |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.rnorvegicus.biomart.igis |
shpc-registry automated BioContainers addition for bioconductor-txdb.rnorvegicus.biomart.igis |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.rnorvegicus.ucsc.rn7.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.rnorvegicus.ucsc.rn7.refgene |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-txdb.sscrofa.ucsc.susscr3.refgene |
shpc-registry automated BioContainers addition for bioconductor-txdb.sscrofa.ucsc.susscr3.refgene |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tximeta |
shpc-registry automated BioContainers addition for bioconductor-tximeta |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tximport |
shpc-registry automated BioContainers addition for bioconductor-tximport |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-tximportdata |
shpc-registry automated BioContainers addition for bioconductor-tximportdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-txreginfra |
shpc-registry automated BioContainers addition for bioconductor-txreginfra |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-typeinfo |
shpc-registry automated BioContainers addition for bioconductor-typeinfo |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-u133aaofav2cdf |
shpc-registry automated BioContainers addition for bioconductor-u133aaofav2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-u133x3p.db |
shpc-registry automated BioContainers addition for bioconductor-u133x3p.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-u133x3pcdf |
shpc-registry automated BioContainers addition for bioconductor-u133x3pcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-u133x3pprobe |
shpc-registry automated BioContainers addition for bioconductor-u133x3pprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ucell |
singularity registry hpc automated addition for bioconductor-ucell |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ucscrepeatmasker |
singularity registry hpc automated addition for bioconductor-ucscrepeatmasker |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ularcirc |
shpc-registry automated BioContainers addition for bioconductor-ularcirc |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-umi4cats |
shpc-registry automated BioContainers addition for bioconductor-umi4cats |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
|
GITHUB
|
quay.io/biocontainers/bioconductor-uncoverapplib |
shpc-registry automated BioContainers addition for bioconductor-uncoverapplib |
pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-undo |
shpc-registry automated BioContainers addition for bioconductor-undo |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-unifiedwmwqpcr |
shpc-registry automated BioContainers addition for bioconductor-unifiedwmwqpcr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-uniprot.ws |
shpc-registry automated BioContainers addition for bioconductor-uniprot.ws |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-uniprotkeywords |
singularity registry hpc automated addition for bioconductor-uniprotkeywords |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-uniquorn |
shpc-registry automated BioContainers addition for bioconductor-uniquorn |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-universalmotif |
shpc-registry automated BioContainers addition for bioconductor-universalmotif |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-updateobject |
singularity registry hpc automated addition for bioconductor-updateobject |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-usort |
shpc-registry automated BioContainers addition for bioconductor-usort |
wget, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/bioconductor-vaexprs |
shpc-registry automated BioContainers addition for bioconductor-vaexprs |
jaotc, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs, pack200, rmic |
|
GITHUB
|
quay.io/biocontainers/bioconductor-vanillaice |
shpc-registry automated BioContainers addition for bioconductor-vanillaice |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-varcon |
shpc-registry automated BioContainers addition for bioconductor-varcon |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-variancepartition |
shpc-registry automated BioContainers addition for bioconductor-variancepartition |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-variantannotation |
shpc-registry automated BioContainers addition for bioconductor-variantannotation |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-variantexperiment |
shpc-registry automated BioContainers addition for bioconductor-variantexperiment |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-variantfiltering |
shpc-registry automated BioContainers addition for bioconductor-variantfiltering |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-varianttools |
shpc-registry automated BioContainers addition for bioconductor-varianttools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-varianttoolsdata |
shpc-registry automated BioContainers addition for bioconductor-varianttoolsdata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-vasp |
shpc-registry automated BioContainers addition for bioconductor-vasp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-vbmp |
shpc-registry automated BioContainers addition for bioconductor-vbmp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-vcfarray |
shpc-registry automated BioContainers addition for bioconductor-vcfarray |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-vdjdive |
singularity registry hpc automated addition for bioconductor-vdjdive |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-vectrapolarisdata |
singularity registry hpc automated addition for bioconductor-vectrapolarisdata |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-vega |
shpc-registry automated BioContainers addition for bioconductor-vega |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-vegamc |
shpc-registry automated BioContainers addition for bioconductor-vegamc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-velociraptor |
shpc-registry automated BioContainers addition for bioconductor-velociraptor |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-veloviz |
shpc-registry automated BioContainers addition for bioconductor-veloviz |
glpsol |
|
GITHUB
|
quay.io/biocontainers/bioconductor-venndetail |
shpc-registry automated BioContainers addition for bioconductor-venndetail |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-verso |
shpc-registry automated BioContainers addition for bioconductor-verso |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-vidger |
shpc-registry automated BioContainers addition for bioconductor-vidger |
pandoc-citeproc, pandoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-viper |
shpc-registry automated BioContainers addition for bioconductor-viper |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-viseago |
shpc-registry automated BioContainers addition for bioconductor-viseago |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-visse |
shpc-registry automated BioContainers addition for bioconductor-visse |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-vitisviniferacdf |
shpc-registry automated BioContainers addition for bioconductor-vitisviniferacdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-vitisviniferaprobe |
shpc-registry automated BioContainers addition for bioconductor-vitisviniferaprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-voyager |
singularity registry hpc automated addition for bioconductor-voyager |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, udunits2, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, dap-config, dap-config-pkgconfig, gdal-config, gdal_contour, gdal_grid, gdal_rasterize, gdal_translate |
|
GITHUB
|
quay.io/biocontainers/bioconductor-vplotr |
shpc-registry automated BioContainers addition for bioconductor-vplotr |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-vsclust |
singularity registry hpc automated addition for bioconductor-vsclust |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-vsn |
shpc-registry automated BioContainers addition for bioconductor-vsn |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-vtpnet |
shpc-registry automated BioContainers addition for bioconductor-vtpnet |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-vulcan |
shpc-registry automated BioContainers addition for bioconductor-vulcan |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-vulcandata |
shpc-registry automated BioContainers addition for bioconductor-vulcandata |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-waddr |
shpc-registry automated BioContainers addition for bioconductor-waddr |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-watermelon |
shpc-registry automated BioContainers addition for bioconductor-watermelon |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-wavcluster |
shpc-registry automated BioContainers addition for bioconductor-wavcluster |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-wavetiling |
shpc-registry automated BioContainers addition for bioconductor-wavetiling |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-wavetilingdata |
shpc-registry automated BioContainers addition for bioconductor-wavetilingdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-weaver |
shpc-registry automated BioContainers addition for bioconductor-weaver |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-webbioc |
shpc-registry automated BioContainers addition for bioconductor-webbioc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-weberdivechalcdata |
singularity registry hpc automated addition for bioconductor-weberdivechalcdata |
x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-weitrix |
shpc-registry automated BioContainers addition for bioconductor-weitrix |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-wes.1kg.wugsc |
shpc-registry automated BioContainers addition for bioconductor-wes.1kg.wugsc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-wgsmapp |
shpc-registry automated BioContainers addition for bioconductor-wgsmapp |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-wheatcdf |
shpc-registry automated BioContainers addition for bioconductor-wheatcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-wheatprobe |
shpc-registry automated BioContainers addition for bioconductor-wheatprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-widgettools |
shpc-registry automated BioContainers addition for bioconductor-widgettools |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-wiggleplotr |
shpc-registry automated BioContainers addition for bioconductor-wiggleplotr |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-worm.db0 |
shpc-registry automated BioContainers addition for bioconductor-worm.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-wpm |
shpc-registry automated BioContainers addition for bioconductor-wpm |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-wppi |
shpc-registry automated BioContainers addition for bioconductor-wppi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-wrench |
shpc-registry automated BioContainers addition for bioconductor-wrench |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-xbseq |
shpc-registry automated BioContainers addition for bioconductor-xbseq |
wget, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/bioconductor-xcir |
shpc-registry automated BioContainers addition for bioconductor-xcir |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-xcms |
shpc-registry automated BioContainers addition for bioconductor-xcms |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-xcore |
singularity registry hpc automated addition for bioconductor-xcore |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-xcoredata |
singularity registry hpc automated addition for bioconductor-xcoredata |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-xde |
shpc-registry automated BioContainers addition for bioconductor-xde |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-xenopus.db0 |
shpc-registry automated BioContainers addition for bioconductor-xenopus.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-xenopuslaeviscdf |
shpc-registry automated BioContainers addition for bioconductor-xenopuslaeviscdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-xenopuslaevisprobe |
shpc-registry automated BioContainers addition for bioconductor-xenopuslaevisprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-xeva |
shpc-registry automated BioContainers addition for bioconductor-xeva |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-xhybcasneuf |
shpc-registry automated BioContainers addition for bioconductor-xhybcasneuf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-xina |
shpc-registry automated BioContainers addition for bioconductor-xina |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-xlaevis.db |
shpc-registry automated BioContainers addition for bioconductor-xlaevis.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-xlaevis2cdf |
shpc-registry automated BioContainers addition for bioconductor-xlaevis2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-xlaevis2probe |
shpc-registry automated BioContainers addition for bioconductor-xlaevis2probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-xmapbridge |
shpc-registry automated BioContainers addition for bioconductor-xmapbridge |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-xnastring |
shpc-registry automated BioContainers addition for bioconductor-xnastring |
pandoc-server, pandoc |
|
GITHUB
|
quay.io/biocontainers/bioconductor-xtropicaliscdf |
shpc-registry automated BioContainers addition for bioconductor-xtropicaliscdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-xtropicalisprobe |
shpc-registry automated BioContainers addition for bioconductor-xtropicalisprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-xvector |
shpc-registry automated BioContainers addition for bioconductor-xvector |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-yamss |
shpc-registry automated BioContainers addition for bioconductor-yamss |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/bioconductor-yapsa |
shpc-registry automated BioContainers addition for bioconductor-yapsa |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-yaqcaffy |
shpc-registry automated BioContainers addition for bioconductor-yaqcaffy |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-yarn |
shpc-registry automated BioContainers addition for bioconductor-yarn |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ye6100subacdf |
shpc-registry automated BioContainers addition for bioconductor-ye6100subacdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ye6100subbcdf |
shpc-registry automated BioContainers addition for bioconductor-ye6100subbcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ye6100subccdf |
shpc-registry automated BioContainers addition for bioconductor-ye6100subccdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ye6100subdcdf |
shpc-registry automated BioContainers addition for bioconductor-ye6100subdcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-yeast.db0 |
shpc-registry automated BioContainers addition for bioconductor-yeast.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-yeast2.db |
shpc-registry automated BioContainers addition for bioconductor-yeast2.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-yeast2cdf |
shpc-registry automated BioContainers addition for bioconductor-yeast2cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-yeast2probe |
shpc-registry automated BioContainers addition for bioconductor-yeast2probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-yeastcc |
shpc-registry automated BioContainers addition for bioconductor-yeastcc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-yeastexpdata |
shpc-registry automated BioContainers addition for bioconductor-yeastexpdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-yeastgsdata |
shpc-registry automated BioContainers addition for bioconductor-yeastgsdata |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-yeastnagalakshmi |
shpc-registry automated BioContainers addition for bioconductor-yeastnagalakshmi |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-yeastrnaseq |
shpc-registry automated BioContainers addition for bioconductor-yeastrnaseq |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ygs98.db |
shpc-registry automated BioContainers addition for bioconductor-ygs98.db |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-ygs98cdf |
shpc-registry automated BioContainers addition for bioconductor-ygs98cdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ygs98frmavecs |
shpc-registry automated BioContainers addition for bioconductor-ygs98frmavecs |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-ygs98probe |
shpc-registry automated BioContainers addition for bioconductor-ygs98probe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-yri1kgv |
shpc-registry automated BioContainers addition for bioconductor-yri1kgv |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-yrimulti |
shpc-registry automated BioContainers addition for bioconductor-yrimulti |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-zebrafish.db |
shpc-registry automated BioContainers addition for bioconductor-zebrafish.db |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-zebrafish.db0 |
shpc-registry automated BioContainers addition for bioconductor-zebrafish.db0 |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-zebrafishcdf |
shpc-registry automated BioContainers addition for bioconductor-zebrafishcdf |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-zebrafishprobe |
shpc-registry automated BioContainers addition for bioconductor-zebrafishprobe |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-zebrafishrnaseq |
shpc-registry automated BioContainers addition for bioconductor-zebrafishrnaseq |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/bioconductor-zellkonverter |
shpc-registry automated BioContainers addition for bioconductor-zellkonverter |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-zenith |
singularity registry hpc automated addition for bioconductor-zenith |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-zfpkm |
shpc-registry automated BioContainers addition for bioconductor-zfpkm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-zinbwave |
shpc-registry automated BioContainers addition for bioconductor-zinbwave |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/bioconductor-zlibbioc |
shpc-registry automated BioContainers addition for bioconductor-zlibbioc |
|
|
GITHUB
|
quay.io/biocontainers/bioconductor-zygositypredictor |
singularity registry hpc automated addition for bioconductor-zygositypredictor |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bioconvert |
shpc-registry automated BioContainers addition for bioconvert |
abi-dump.2.11.0, abi-load, abi-load.2, abi-load.2.11.0, align-cache.2.11.0, align-info.2.11.0, alignmentSieve, bam-load.2.11.0, bamCompare, bamCoverage, bamPEFragmentSize, bigWigToBedGraph, bigwigCompare, bioconvert, bioconvert_init, bioconvert_stats, biosniff, cache-mgr.2.11.0, ccextract, ccextract.2, ccextract.2.11.0, cg-load.2.11.0, computeGCBias, computeMatrix, computeMatrixOperations, correctGCBias, deeptools, dsrc, estimateReadFiltering, estimateScaleFactor, fasterq-dump-orig.2.11.0, fasterq-dump.2.11.0, fastq-dump-orig.2.11.0, fastq-dump.2.11.0, fastq-load, fastq-load.2, fastq-load.2.11.0, go, gofmt, helicos-load, helicos-load.2, helicos-load.2.11.0, illumina-dump.2.11.0, illumina-load, illumina-load.2, illumina-load.2.11.0, kar.2.11.0, kdbmeta.2.11.0, kget.2.11.0, latf-load.2.11.0, ldc-build-runtime, ldc-profdata, ldc-prune-cache, ldc2, ldmd2, mawk, md5cp.2.11.0, mosdepth, multiBamSummary, multiBigwigSummary, pacbio-load, pacbio-load.2, pacbio-load.2.11.0, pacbio-loadxml, pacbio-loadxml.2, pacbio-loadxml.2.11.0, plink, plotCorrelation, plotCoverage, plotEnrichment, plotFingerprint, plotHeatmap, plotPCA, plotProfile, prefetch-orig.2.11.0, prefetch.2.11.0, rcexplain.2.11.0, read-filter-redact.2.11.0, sam-dump-orig.2.11.0, sam-dump.2.11.0, sff-dump.2.11.0, sff-load, sff-load.2, sff-load.2.11.0, squizz, sra-pileup-orig.2.11.0, sra-pileup.2.11.0, sra-sort-cg.2.11.0, sra-sort.2.11.0, sra-stat.2.11.0, srapath-orig.2.11.0, srapath.2.11.0, sratools.2.11.0, srf-load, srf-load.2, srf-load.2.11.0, test-sra.2.11.0, vdb-config.2.11.0, vdb-copy.2.11.0, vdb-decrypt.2.11.0, vdb-diff.2.11.0, vdb-dump-orig.2.11.0, vdb-dump.2.11.0, vdb-encrypt.2.11.0, vdb-lock.2.11.0, vdb-passwd.2.11.0, vdb-unlock.2.11.0, vdb-validate.2.11.0, wiggletools, sambamba, align-cache.2, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical |
|
GITHUB
|
quay.io/biocontainers/biodiff |
shpc-registry automated BioContainers addition for biodiff |
biodiff, udiff2vcf, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/biodigest |
singularity registry hpc automated addition for biodigest |
bioservices, gseapy, gtk-builder-tool, gtk-encode-symbolic-svg, gtk-launch, gtk-query-immodules-3.0, gtk-query-settings, wayland-scanner, browse, xkbcli, pcre2posix_test, rsvg-convert, cups-config, ippeveprinter, ipptool, gtk-update-icon-cache, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, hb-info, dbus-cleanup-sockets, dbus-daemon, dbus-launch, dbus-monitor, dbus-run-session, dbus-send, dbus-test-tool, dbus-update-activation-environment, dbus-uuidgen, xslt-config, xsltproc, tqdm |
|
GITHUB
|
quay.io/biocontainers/bioepic |
shpc-registry automated BioContainers addition for bioepic |
epic, epic-effective, easy_install-3.5, natsort, faidx, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config |
|
GITHUB
|
quay.io/biocontainers/bioexcel_seqqc |
shpc-registry automated BioContainers addition for bioexcel_seqqc |
bxcl_seqqc, cutadapt, fastqc, pigz, unpigz, jaotc, jdeprscan, jhsdb, jimage, jlink, jmod |
|
GITHUB
|
quay.io/biocontainers/biofluff |
shpc-registry automated BioContainers addition for biofluff |
fluff, htseq-count-barcodes, htseq-count, htseq-qa, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py |
|
GITHUB
|
quay.io/biocontainers/bioformats |
shpc-registry automated BioContainers addition for bioformats |
bioformats, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, futurize, pasteurize, 2to3-3.8, idle3.8, pydoc3.8, python3.8 |
|
GITHUB
|
quay.io/biocontainers/bioframe |
shpc-registry automated BioContainers addition for bioframe |
bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix, pairs_merger |
|
GITHUB
|
quay.io/biocontainers/biogridpy |
shpc-registry automated BioContainers addition for biogridpy |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/bioinfokit |
shpc-registry automated BioContainers addition for bioinfokit |
tabulate, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump |
|
GITHUB
|
quay.io/biocontainers/biokit |
shpc-registry automated BioContainers addition for biokit |
easydev_buildPackage, ibrowse, multigit, browse, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, rst2html4.py |
|
GITHUB
|
quay.io/biocontainers/biolib |
shpc-registry automated BioContainers addition for biolib |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc |
|
GITHUB
|
quay.io/biocontainers/biolite-tools |
shpc-registry automated BioContainers addition for biolite-tools |
bl-coverage, bl-exclude, bl-fasta2fastq, bl-fastq2fasta, bl-filter-illumina, bl-insert-stats, bl-interleave, bl-pair-reads, bl-pileup-stats, bl-randomize, bl-threshold |
|
GITHUB
|
quay.io/biocontainers/biolite |
shpc-registry automated BioContainers addition for biolite |
|
|
GITHUB
|
quay.io/biocontainers/biom-format |
shpc-registry automated BioContainers addition for biom-format |
pyqi, unit2, conv-template, from-template, biom, futurize, pasteurize, python2-config, python2.7-config, python2, python2.7 |
|
GITHUB
|
quay.io/biocontainers/biomaj |
shpc-registry automated BioContainers addition for biomaj |
biomaj-cli.py, tabulate, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5 |
|
GITHUB
|
quay.io/biocontainers/bionetcomp |
shpc-registry automated BioContainers addition for bionetcomp |
bionetcomp, gseapy, easydev_buildPackage, ibrowse, multigit, browse, xslt-config, xsltproc, chardetect, f2py3.9, opj_compress, opj_decompress |
|
GITHUB
|
quay.io/biocontainers/bionumpy |
singularity registry hpc automated addition for bionumpy |
bionumpy, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/biopet-bamstats |
shpc-registry automated BioContainers addition for biopet-bamstats |
biopet-bamstats, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-basecounter |
shpc-registry automated BioContainers addition for biopet-basecounter |
biopet-basecounter, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-extractadaptersfastqc |
shpc-registry automated BioContainers addition for biopet-extractadaptersfastqc |
biopet-extractadaptersfastqc, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-fastqsplitter |
shpc-registry automated BioContainers addition for biopet-fastqsplitter |
biopet-fastqsplitter, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-sampleconfig |
shpc-registry automated BioContainers addition for biopet-sampleconfig |
biopet-sampleconfig, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-scatterregions |
shpc-registry automated BioContainers addition for biopet-scatterregions |
biopet-scatterregions, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-seattleseqkit |
shpc-registry automated BioContainers addition for biopet-seattleseqkit |
biopet-seattleseqkit, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-seqstat |
shpc-registry automated BioContainers addition for biopet-seqstat |
biopet-seqstat, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-validateannotation |
shpc-registry automated BioContainers addition for biopet-validateannotation |
biopet-validateannotation, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-validatefastq |
shpc-registry automated BioContainers addition for biopet-validatefastq |
biopet-validatefastq, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-validatevcf |
shpc-registry automated BioContainers addition for biopet-validatevcf |
biopet-validatevcf, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-vcffilter |
shpc-registry automated BioContainers addition for biopet-vcffilter |
biopet-vcffilter, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet-vcfstats |
shpc-registry automated BioContainers addition for biopet-vcfstats |
biopet-vcfstats, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/biopet |
shpc-registry automated BioContainers addition for biopet |
|
|
GITHUB
|
quay.io/biocontainers/biophi |
shpc-registry automated BioContainers addition for biophi |
ANARCI, biophi, celery, fairseq-eval-lm, fairseq-generate, fairseq-interactive, fairseq-preprocess, fairseq-score, fairseq-train, fairseq-validate, sacrebleu, sapiens, torchrun, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, vba_extract.py, flask, tabulate, cygdb, cython, cythonize, hmmpgmd_shard |
|
GITHUB
|
quay.io/biocontainers/bioprov |
shpc-registry automated BioContainers addition for bioprov |
bioprov, coveralls, prov-compare, prov-convert, coverage, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, py.test, pytest, prodigal, diffimg |
|
GITHUB
|
quay.io/biocontainers/biopython.convert |
shpc-registry automated BioContainers addition for biopython.convert |
biopython.convert, pbr, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, jp.py, faidx, f2py3.10, 2to3-3.10 |
|
GITHUB
|
quay.io/biocontainers/biopython |
shpc-registry automated BioContainers addition for biopython |
|
|
GITHUB
|
quay.io/biocontainers/bioservices |
shpc-registry automated BioContainers addition for bioservices |
easydev_buildPackage, ibrowse, multigit, browse, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, rst2html4.py |
|
GITHUB
|
quay.io/biocontainers/biosniff |
singularity registry hpc automated addition for biosniff |
biosniff, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/biotdg |
shpc-registry automated BioContainers addition for biotdg |
biotdg, dwgsim, dwgsim_eval, cyvcf2, coloredlogs, humanfriendly, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
|
GITHUB
|
quay.io/biocontainers/biothings_client |
shpc-registry automated BioContainers addition for biothings_client |
normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/biotradis |
shpc-registry automated BioContainers addition for biotradis |
add_tradis_tags, bacteria_tradis, basqcol, check_tradis_tags, combine_tradis_plots, fetchseq, filter_tradis_tags, mixreads, readstats, remove_tradis_tags, simqual, simread, smalt, splitmates, splitreads, tradis_comparison.R, tradis_essentiality.R, tradis_gene_insert_sites, tradis_merge_plots, tradis_plot, trunkreads, config_data, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml, basemlg, chi2, codeml, evolver |
|
GITHUB
|
quay.io/biocontainers/biotransformer |
shpc-registry automated BioContainers addition for biotransformer |
biotransformer, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, 2to3-3.10 |
|
GITHUB
|
quay.io/biocontainers/bioutils |
shpc-registry automated BioContainers addition for bioutils |
normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/biowdl-input-converter |
shpc-registry automated BioContainers addition for biowdl-input-converter |
biowdl-input-converter, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/bird_tool_utils_python |
shpc-registry automated BioContainers addition for bird_tool_utils_python |
x86_64-conda_cos7-linux-gnu-ld, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/bis-snp-utils |
shpc-registry automated BioContainers addition for bis-snp-utils |
annotateBed_2way.pl, mergeBamWithSameSM.pl, sep_line_by_name.pl, sortByRefAndCor.pl, uniqLine.pl, vcf2bed.NOME.pl, vcf2bed.pl, vcf2bed6plus2.pl, vcf2bed6plus2.strand.pl, vcf2bedGraph.pl, vcf2coverage.pl, vcf2wig.pl, vcf2wig_ct_coverage.pl, vcf4ToRod_in_specific_pos.pl, gtf2bed.pl, perl5.32.0, streamzip |
|
GITHUB
|
quay.io/biocontainers/bis-snp |
shpc-registry automated BioContainers addition for bis-snp |
|
|
GITHUB
|
quay.io/biocontainers/biscot |
singularity registry hpc automated addition for biscot |
biscot, coloredlogs, humanfriendly, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/biscuit |
shpc-registry automated BioContainers addition for biscuit |
QC.sh, biscuit, build_biscuit_QC_assets.pl, build_biscuit_QC_assets.pl.bak, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/biskit |
shpc-registry automated BioContainers addition for biskit |
bis.py, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/bismark |
shpc-registry automated BioContainers addition for bismark |
Bismark_alignment_modes.pdf, NOMe_filtering, _config.yml, bam2nuc, bismark, bismark2bedGraph, bismark2report, bismark2summary, bismark_genome_preparation, bismark_methylation_extractor, copy_bismark_files_for_release.pl, coverage2cytosine, deduplicate_bismark, extract_exons.py, extract_splice_sites.py, filter_non_conversion, hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, license.txt, methylation_consistency, test_data.fastq, metadata_conda_debug.yaml, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s |
|
GITHUB
|
quay.io/biocontainers/bitmapperbs |
shpc-registry automated BioContainers addition for bitmapperbs |
bitmapperBS, psascan |
|
GITHUB
|
quay.io/biocontainers/bitstring |
shpc-registry automated BioContainers addition for bitstring |
2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/blacksheep-outliers |
shpc-registry automated BioContainers addition for blacksheep-outliers |
deva, qhelpconverter, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner, repc, pylupdate5, pyrcc5 |
|
GITHUB
|
quay.io/biocontainers/blasr |
shpc-registry automated BioContainers addition for blasr |
bam2sam, blasr, loadPulses, pbindex, pbindexdump, pbmerge, pls2fasta, samFilter, samtoh5, samtom4, sawriter, sdpMatcher, easy_install-3.6, uconv, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
|
GITHUB
|
quay.io/biocontainers/blast-legacy |
shpc-registry automated BioContainers addition for blast-legacy |
bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb, impala, makemat |
|
GITHUB
|
quay.io/biocontainers/blast |
shpc-registry automated BioContainers addition for blast |
blast_formatter, blastdb_aliastool, blastdbcheck, blastdbcmd, blastn, blastp, blastx, cleanup-blastdb-volumes.py, convert2blastmask, deltablast, eblast, makeblastdb, psiblast, rpsblast, rpstblastn, tblastn, tblastx, update_blastdb.pl |
|
GITHUB
|
quay.io/biocontainers/blast2galaxy |
singularity registry hpc automated addition for blast2galaxy |
bioblend-galaxy-tests, blast2galaxy, markdown-it, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, pygmentize, normalizer |
|
GITHUB
|
quay.io/biocontainers/blastalign |
shpc-registry automated BioContainers addition for blastalign |
BlastAlign, BlastAlign.py, BlastAlignP, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb, impala, makemat |
|
GITHUB
|
quay.io/biocontainers/blastbesties |
shpc-registry automated BioContainers addition for blastbesties |
blastbesties, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/blastmining |
singularity registry hpc automated addition for blastmining |
blastMining, blastMining_lca.sh, blastMining_lca2.sh, csvtk, f2py3.11, ktClassifyHits, ktImportHits, run_besthit.py, run_lca.py, run_vote.py, run_voteSpecies.py, tab2krona.py, taxonkit, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, ktClassifyBLAST, ktGetContigMagnitudes, ktGetLCA, ktGetLibPath, ktGetTaxIDFromAcc, ktGetTaxInfo, ktImportBLAST, ktImportDiskUsage, ktImportEC, ktImportFCP, ktImportGalaxy, ktImportKrona, ktImportMETAREP-BLAST, ktImportMETAREP-EC, ktImportMGRAST, ktImportPhymmBL, ktImportRDP, ktImportRDPComparison, ktImportTaxonomy, ktImportText |
|
GITHUB
|
quay.io/biocontainers/blaze2 |
singularity registry hpc automated addition for blaze2 |
blaze, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tqdm, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/bleach |
shpc-registry automated BioContainers addition for bleach |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/blend-bio |
singularity registry hpc automated addition for blend-bio |
blend, sdust |
|
GITHUB
|
quay.io/biocontainers/bleties |
shpc-registry automated BioContainers addition for bleties |
NCRF, bleties, milcor_plot.py, milraa_plot.py, ncrf_cat, ncrf_cat.py, ncrf_consensus_filter, ncrf_consensus_filter.py, ncrf_parse.py, ncrf_resolve_overlaps, ncrf_resolve_overlaps.py, ncrf_sort, ncrf_sort.py, ncrf_summary, ncrf_summary.py, ncrf_to_bed, ncrf_to_bed.py, spoa, muscle, f2py3.7, opj_compress, opj_decompress, opj_dump, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config |
|
GITHUB
|
quay.io/biocontainers/blinker |
shpc-registry automated BioContainers addition for blinker |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/blksheep |
shpc-registry automated BioContainers addition for blksheep |
blacksheep, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc |
|
GITHUB
|
quay.io/biocontainers/blobtools |
shpc-registry automated BioContainers addition for blobtools |
blobtools, blobtools-build_nodesdb, compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, qwebengine_convert_dict |
|
GITHUB
|
quay.io/biocontainers/blockbuster |
shpc-registry automated BioContainers addition for blockbuster |
blockbuster.x |
|
GITHUB
|
quay.io/biocontainers/blockclust |
shpc-registry automated BioContainers addition for blockclust |
EDeN, blockclust, blockclust.py, blockclust_plot.r, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray, mcxassemble |
|
GITHUB
|
quay.io/biocontainers/bloocoo |
shpc-registry automated BioContainers addition for bloocoo |
Bloocoo |
|
GITHUB
|
quay.io/biocontainers/bloomfiltertrie |
shpc-registry automated BioContainers addition for bloomfiltertrie |
bft, jemalloc-config, jeprof, jemalloc.sh |
|
GITHUB
|
quay.io/biocontainers/blosum |
singularity registry hpc automated addition for blosum |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/bmfilter |
shpc-registry automated BioContainers addition for bmfilter |
bmfilter |
|
GITHUB
|
quay.io/biocontainers/bmge |
shpc-registry automated BioContainers addition for bmge |
bmge, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/bmtagger |
shpc-registry automated BioContainers addition for bmtagger |
bmfilter, bmtagger.sh, bmtool, extract_fullseq, srprism, test_pcre, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, seedtop, run_with_lock, blast_formatter, blastdb_aliastool, blastdbcheck |
|
GITHUB
|
quay.io/biocontainers/bmtool |
shpc-registry automated BioContainers addition for bmtool |
bmtool |
|
GITHUB
|
quay.io/biocontainers/bohra |
shpc-registry automated BioContainers addition for bohra |
abricate, abricate-get_db, abritamr, amr_report, amrfinder, amrfinder_update, bohra, create_pan_genome, create_pan_genome_plots.R, croco-0.6-config, csslint-0.6, dna_mutation, extract_proteome_from_gff, fasta2parts, fasta_check, gff_check, iterative_cdhit, kraken2, kraken2-build, kraken2-inspect, lighter, mlst, pan_genome_assembly_statistics, pan_genome_core_alignment, pan_genome_post_analysis, pan_genome_reorder_spreadsheet, parallel_all_against_all_blastp, protein_alignment_from_nucleotides, query_pan_genome, roary, roary-create_pan_genome_plots.R, roary-pan_genome_reorder_spreadsheet, roary-query_pan_genome, roary-unique_genes_per_sample, shovill, skesa, snippy, snippy-clean_full_aln, snippy-core, snippy-multi, snippy-vcf_extract_subs, snippy-vcf_report, snippy-vcf_to_tab, snp-dists, transfer_annotation_to_groups, vcfnormalizesvs, vcfnull2ref, vcfunphase, x86_64-conda_cos6-linux-gnu-pkg-config, yapp, snp-sites, fix-sqn-date, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, mpichversion, mpivars, parkill, prank, vt |
|
GITHUB
|
quay.io/biocontainers/bold-identification |
shpc-registry automated BioContainers addition for bold-identification |
bold_identification, chardetect, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/bolt-lmm |
shpc-registry automated BioContainers addition for bolt-lmm |
bolt, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/bolt |
shpc-registry automated BioContainers addition for bolt |
|
|
GITHUB
|
quay.io/biocontainers/boltons |
shpc-registry automated BioContainers addition for boltons |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/boms |
singularity registry hpc automated addition for boms |
hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10 |
|
GITHUB
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quay.io/biocontainers/booster |
shpc-registry automated BioContainers addition for booster |
booster |
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GITHUB
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quay.io/biocontainers/boquila |
singularity registry hpc automated addition for boquila |
boquila |
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GITHUB
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quay.io/biocontainers/borf |
shpc-registry automated BioContainers addition for borf |
borf, doesitcache, compile-et.pl, iptest3, prerr.properties, iptest, ipython3, ipython, cygdb, cython, cythonize |
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GITHUB
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quay.io/biocontainers/botocore |
shpc-registry automated BioContainers addition for botocore |
jp.py, easy_install-3.6, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py |
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GITHUB
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quay.io/biocontainers/bottle |
shpc-registry automated BioContainers addition for bottle |
bottle.py, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/boutroslabplottinggeneral |
shpc-registry automated BioContainers addition for boutroslabplottinggeneral |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
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GITHUB
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quay.io/biocontainers/bowtie |
shpc-registry automated BioContainers addition for bowtie |
bowtie, bowtie-align-l, bowtie-align-s, bowtie-build, bowtie-build-l, bowtie-build-s, bowtie-inspect, bowtie-inspect-l, bowtie-inspect-s, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv, perl5.32.1 |
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GITHUB
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quay.io/biocontainers/bowtie2 |
shpc-registry automated BioContainers addition for bowtie2 |
bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, perl5.26.2, podselect |
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GITHUB
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quay.io/biocontainers/bpipe |
shpc-registry automated BioContainers addition for bpipe |
bg-bpipe, bpipe, bpipe-pbspro.sh, bpipe-slurm.sh, bpipe-torque.sh, bpipe-utils.sh, groovy_script, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
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GITHUB
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quay.io/biocontainers/bpp-core |
shpc-registry automated BioContainers addition for bpp-core |
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GITHUB
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quay.io/biocontainers/bpp-phyl |
shpc-registry automated BioContainers addition for bpp-phyl |
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GITHUB
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quay.io/biocontainers/bpp-popgen |
shpc-registry automated BioContainers addition for bpp-popgen |
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GITHUB
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quay.io/biocontainers/bpp-seq |
shpc-registry automated BioContainers addition for bpp-seq |
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GITHUB
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quay.io/biocontainers/bracken |
shpc-registry automated BioContainers addition for bracken |
bracken, bracken-build, combine_bracken_outputs.py, est_abundance.py, generate_kmer_distribution.py, kmer2read_distr, kraken2, kraken2-build, kraken2-inspect, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, tar, edirect.py, filter-columns, fuse-segments |
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GITHUB
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quay.io/biocontainers/braid-mrf |
singularity registry hpc automated addition for braid-mrf |
numba, pycc, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, gif2rgb, gifbuild, gifclrmp, giffix |
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GITHUB
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quay.io/biocontainers/braker |
shpc-registry automated BioContainers addition for braker |
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GITHUB
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quay.io/biocontainers/braker2 |
shpc-registry automated BioContainers addition for braker2 |
GeMoMa, PF00225_full.blocks.txt, PF00225_seed.blocks.txt, SplicedAlignment.pm, aa2nonred.pl, add_name_to_gff3.pl, align2hints.pl, aln2wig, augustify.py, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, bam2wig, bamToWig.py, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, braker.pl, braker_cleanup.pl, catchr.pl, cdbfasta, cdbyank, cegma2gff.pl, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, compare_intervals_exact.pl, compare_masking.pl, compileSpliceCands, computeFlankingRegion.pl, createAugustusJoblist.pl, del_from_prfl.pl, downsample_traingenes.pl, ensure_n_training_genes.py, esd2esi, evalCGP.pl, eval_dualdecomp.pl, eval_multi_gtf.pl, executeTestCGP.py, exonerate, exonerate-server, exonerate2hints.pl, exoniphyDb2hints.pl, extractAnno.py, extractTranscriptEnds.pl, fasta2esd, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds, filter-ppx.pl, filterGenemark.pl, filterGenes.pl, filterGenesIn.pl, filterGenesIn_mRNAname.pl, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterIntronsFindStrand.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, filter_augustus_gff.pl, findGenesInIntrons.pl, findGffNamesInFasta.pl, fix_gtf_ids.py, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, gatech_pmp2hints.pl, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, genePredCheck, genePredToBed, genePredToBigGenePred, getAnnoFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, getSeq, get_loci_from_gb.pl, gff2gbSmallDNA.pl, gff2ps_mycustom, gffGetmRNA.pl, gp2othergp.pl, gtf2aa.pl, gtf2gff.pl, gtfToGenePred, gth, gth2gtf.pl, gthclean.sh, gthcleanrec.sh, gthconsensus, gthfilestat, gthgetseq, gthsplit, gthsplit2dim.sh, gushr.py, hal2maf_split.pl, helpMod.pm, hgGcPercent, ipcress, ixIxx, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, load2sqlitedb, log_reg_prothints.pl, lp_solve, maf2conswig.pl, makblk.pl, makdbs, makeMatchLists.pl, makeUtrTrainingSet.pl, make_hub.py, makeidx.pl, makmdm, maskNregions.pl, merge_masking.pl, merge_transcript_sets.pl, moveParameters.pl, msa2prfl.pl, new_species.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, peptides2alternatives.pl, peptides2hints.pl, phastconsDB2hints.pl, polyA2hints.pl, pp_simScore, prints2prfl.pl, pslMap.pl, randomSplit.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, samMap.pl, scipiogff2gff.pl, setStopCodonFreqs.pl, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, sortGeneMark.py, sortgrcd, spaln, splitMfasta.pl, split_wiggle.pl, spspaln.pl, startAlign.pl, summarizeACGTcontent.pl, transMap2hints.pl, tsebra.py, uniquePeptides.pl, utrgff2gbrowse.pl, utrrnaseq, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, yaml2gff.1.4.pl, augustus, bam2hints, etraining, fastBlockSearch, filterBam, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign, wigToBigWig |
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GITHUB
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quay.io/biocontainers/braker3 |
singularity registry hpc automated addition for braker3 |
LICENSE.txt, PF00225_full.blocks.txt, PF00225_seed.blocks.txt, add_name_to_gff3.pl, aln2wig, augustify.py, bamToWig.py, braker.pl, braker_cleanup.pl, catchr.pl, compare_intervals_exact.pl, compare_masking.pl, downsample_traingenes.pl, ensure_n_training_genes.py, esd2esi, evidence.py, executeTestCGP.py, exonerate, exonerate-server, extractAnno.py, fasta2esd, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds, features.py, filterGenemark.pl, filterIntronsFindStrand.pl, filter_augustus_gff.pl, findGenesInIntrons.pl, findRepetitiveProtSeqs.py, fix_gtf_ids.py, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, gatech_pmp2hints.pl, genePredCheck, genePredToBigGenePred, genome_anno.py, get_etp_hints.py, get_gc_content.py, get_loci_from_gb.pl, get_longest_isoform.py, gth, gthclean.sh, gthcleanrec.sh, gthconsensus, gthfilestat, gthgetseq, gthsplit, gthsplit2dim.sh, hgGcPercent, ipcress, ixIxx, log_reg_prothints.pl, makblk.pl, makdbs, make_hub.py, makeidx.pl, makmdm, merge_masking.pl, overlap_graph.py, pp_simScore, print_braker3_setup.py, rename_gtf.py, rename_species.pl, sortGeneMark.py, sortgrcd, spaln, spspaln.pl, stringtie2fa.py, tsebra.py, aa2nonred.pl, cdbfasta, cdbyank, compileSpliceCands, computeFlankingRegion.pl, eval_multi_gtf.pl, filterGenesIn.pl, findGffNamesInFasta.pl, genePredToBed, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, gtf2aa.pl, gth2gtf.pl, setStopCodonFreqs.pl, utrrnaseq, gtfToGenePred, SplicedAlignment.pm, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, bam2wig, bedgraph2wig.pl, blat2gbrowse.pl |
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GITHUB
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quay.io/biocontainers/brass |
shpc-registry automated BioContainers addition for brass |
augment-bam, bamToBw.pl, bam_stats.pl, bam_to_sra_sub.pl, bdf2gdfont.PLS, brass-assemble, brass-group, brass.pl, brassI_filter.pl, brassI_np_in.pl, brassI_pre_filter.pl, brassI_prep_bam.pl, brass_bedpe2vcf.pl, brass_foldback_reads.pl, bwa_aln.pl, bwa_mem.pl, cgpAppendIdsToVcf.pl, cgpVCFSplit.pl, collate_rg_regions.pl, combineResults.pl, compute_coverage.pl, corrected_insertsize.pl, cover, coverage_merge.pl, cpancover, cvtbdf.pl, diff_bams.pl, dotty, esd2esi, exonerate, exonerate-server, faToNib, fasta2esd, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds, filter_with_microbes_and_remapping.pl, filterout-bam, findbp, findbp-all, gcov2perl, get_abs_bkpts_from_clipped_reads.pl, gfClient, gfServer, gnos_pull.pl, grass.pl, ipcress, lneato, make-repeat-file, match_rg_patterns_to_library.pl, merge_double_rgs.pl, monitor.pl, nibFrag, pslPretty, pslReps, pslSort, rearr2bedpe, samcat, samcount, samgroupbyname, samhead, samsort, samsplit, xml_to_bas.pl, yapp, pod_cover, twoBitToFa, blat, velvetg, velveth, twoBitInfo, bp_pairwise_kaks.pl, bp_search2BSML.pl, faToTwoBit, gdlib-config |
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GITHUB
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quay.io/biocontainers/brawn |
singularity registry hpc automated addition for brawn |
brawn, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
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quay.io/biocontainers/break-point-inspector |
shpc-registry automated BioContainers addition for break-point-inspector |
break-point-inspector, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/breakdancer |
shpc-registry automated BioContainers addition for breakdancer |
bam2cfg.pl, breakdancer-max, gdlib-config, bdf2gdfont.pl, bdftogd, gd2copypal, gd2togif, gd2topng, gdcmpgif, gdparttopng, gdtopng, giftogd2 |
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GITHUB
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quay.io/biocontainers/breakfast |
singularity registry hpc automated addition for breakfast |
breakfast, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/breakseq2 |
shpc-registry automated BioContainers addition for breakseq2 |
breakseq2_gen_bplib.py, run_breakseq2.py, cygdb, cython, cythonize, qualfa2fq.pl, xa2multi.pl, bwa, f2py2, f2py2.7, bcftools, vcfutils.pl |
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GITHUB
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quay.io/biocontainers/breseq |
shpc-registry automated BioContainers addition for breseq |
breseq, gdtools, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, 2to3-3.10 |
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GITHUB
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quay.io/biocontainers/brewer2mpl |
shpc-registry automated BioContainers addition for brewer2mpl |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/brockman-pipeline |
shpc-registry automated BioContainers addition for brockman-pipeline |
AMUSED, AMUSED-KS, alignKMers, brockman_pipeline, bundle, bundler, racc, racc2y, shuffleCodons.rb, shuffleCodonsAddMotifs.rb, y2racc, gdbm_dump, gdbm_load, gdbmtool, jemalloc-config, jeprof, twoBitToFa, jemalloc.sh, erb, gem, irb |
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GITHUB
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quay.io/biocontainers/brooklyn_plot |
singularity registry hpc automated addition for brooklyn_plot |
brooklyn_plot, h5delete, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, tjbench, scanpy, aec, numba, pycc, natsort, tqdm, fonttools, pyftmerge, pyftsubset, ttx |
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GITHUB
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quay.io/biocontainers/bs-seeker2 |
shpc-registry automated BioContainers addition for bs-seeker2 |
AUTHORS, Antisense.py, FilterReads.py, RELEASE_NOTES, bs_seeker2-align.py, bs_seeker2-build.py, bs_seeker2-call_methylation.py, metadata_conda_debug.yaml, perl5.32.0, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l |
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GITHUB
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quay.io/biocontainers/bs_call |
shpc-registry automated BioContainers addition for bs_call |
bs_call, dbSNP_idx |
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GITHUB
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quay.io/biocontainers/bsmap |
shpc-registry automated BioContainers addition for bsmap |
bsmap, bsp2sam.py, methdiff.py, methratio.py, sam2bam.sh, build_env_setup.sh, conda_build.sh, fasta-sanitize.pl, plot-ampliconstats, python2-config, python2.7-config, python2, python2.7, idle, python-config |
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GITHUB
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quay.io/biocontainers/bte |
singularity registry hpc automated addition for bte |
protoc, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/btllib |
singularity registry hpc automated addition for btllib |
gunzip, gzexe, gzip, indexlr, lrunzip, lrzcat, lrzip, lrztar, lrzuntar, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zmore, znew, zip, tar, pigz, unpigz, idn2, fasta-sanitize.pl, plot-ampliconstats, wget, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl |
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GITHUB
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quay.io/biocontainers/btrim |
shpc-registry automated BioContainers addition for btrim |
btrim |
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GITHUB
|
quay.io/biocontainers/bttcmp |
shpc-registry automated BioContainers addition for bttcmp |
COG.pl, Gblocks, Plot_ANIheatmap.R, Plot_COG.R, Plot_COG_Abundance.R, Plot_MashHeatmap.R, _gdlib-config, abricate, abricate-get_db, abyss-stack-size, alignGFA, bogart, bogus, bttcmp, canu, canu-time, circlator, contig_break_finder, contig_cleaner, contig_overlap_trimmer, coreprocess.pl, correctOverlaps, create_pan_genome, create_pan_genome_plots.R, dumpBlob, edalign, errorEstimate, extract_proteome_from_gff, falconsense, fastme, filterCorrectionLayouts, filterCorrectionOverlaps, findErrors, findErrors-Dump, fmplot.py, gawk-5.0.1, generateCorrectionLayouts, genome_LenFilter_stats.pl, get_ANImatrix.pl, get_Mash_Matrix.pl, get_all_info_nucl.pl, get_all_info_orfs.pl, get_all_info_prot.pl, get_flag_relative_abundances_table.pl, get_genes_table.pl, gubbins, iterative_cdhit, loadCorrectedReads, loadErates, loadTrimmedReads, mergeRanges, meryl-import, meryl-lookup, mhapConvert, miniasm, minidot, mmapConvert, modeltest-ng, orthofinder, ovStoreBucketizer, ovStoreBuild, ovStoreConfig, ovStoreDump, ovStoreIndexer, ovStoreSorter, ovStoreStats, overlapAlign, overlapConvert, overlapImport, overlapInCore, overlapInCorePartition, overlapPair, pacbio_post_process, pal2nal.pl, pan_genome_assembly_statistics, pan_genome_core_alignment, pan_genome_post_analysis, pan_genome_reorder_spreadsheet, parallel_all_against_all_blastp, pgcgap, plot_3Dpie.R, prefixEditDistance-matchLimitGenerate, protein_alignment_from_nucleotides, query_pan_genome, raxml-ng, raxml-ng-mpi, roary, roary-create_pan_genome_plots.R, roary-pan_genome_reorder_spreadsheet, roary-query_pan_genome, roary-unique_genes_per_sample, run_gubbins.py, scoary, scoary_GUI, scriptlive, sequence, sickle, snippy, snippy-clean_full_aln, snippy-core, snippy-multi, snippy-vcf_extract_subs, snippy-vcf_report, snippy-vcf_to_tab, splitHaplotype, splitReads, sqStoreCreate, sqStoreDumpFASTQ, sqStoreDumpMetaData, tgStoreCompress, tgStoreDump, tgStoreFilter, tgStoreLoad, tgTigDisplay, transfer_annotation_to_groups, triangle2list.pl, trimReads, unicycler, unicycler_align, unicycler_check, unicycler_polish, unicycler_scrub, utgcns, vcf2scoary, vcfnormalizesvs, vcfnull2ref, vcfunphase, wtdbgConvert, yapp, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject |
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GITHUB
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quay.io/biocontainers/bttoxin_digger |
shpc-registry automated BioContainers addition for bttoxin_digger |
BtToxin_Digger, abyss-rresolver-short, abyss-stack-size, alignGFA, bogart, bogus, canu, canu-time, coreprocess.pl, correctOverlaps, draw-tig, dumpBlob, edalign, errorEstimate, falconsense, filterCorrectionLayouts, filterCorrectionOverlaps, findErrors, findErrors-Dump, fixErrors, generateCorrectionLayouts, genome_LenFilter_stats.pl, get_all_info_nucl.pl, get_all_info_orfs.pl, get_all_info_prot.pl, get_counts.pl, get_genes_table.pl, get_stats_summary.pl, irqtop, layoutReads, loadCorrectedReads, loadErates, loadTrimmedReads, lsirq, mergeRanges, mhapConvert, miniasm, minidot, mmapConvert, nsenter, ovStoreBucketizer, ovStoreBuild, ovStoreConfig, ovStoreDump, ovStoreIndexer, ovStoreSorter, ovStoreStats, overlapAlign, overlapConvert, overlapImport, overlapInCore, overlapInCorePartition, overlapPair, pgcgap, prefixEditDistance-matchLimitGenerate, prlimit, sam_add_rg.pl, scriptlive, splitHaplotype, splitReads, sqStoreCreate, sqStoreDumpFASTQ, sqStoreDumpMetaData, tgStoreCompress, tgStoreDump, tgStoreLoad, tgTigDisplay, trimReads, unicycler, unicycler_align, unicycler_check, unicycler_polish, unicycler_scrub, update_version.sh, utgcns, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject |
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GITHUB
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quay.io/biocontainers/bttoxin_scanner |
shpc-registry automated BioContainers addition for bttoxin_scanner |
BtToxin_scanner, COG.pl, Gblocks, Plot_ANIheatmap.R, Plot_COG.R, Plot_COG_Abundance.R, Plot_MashHeatmap.R, _gdlib-config, abricate, abricate-get_db, abyss-stack-size, alignGFA, bogart, bogus, canu, canu-time, circlator, contig_break_finder, contig_cleaner, contig_overlap_trimmer, coreprocess.pl, correctOverlaps, create_pan_genome, create_pan_genome_plots.R, dumpBlob, edalign, errorEstimate, extract_proteome_from_gff, falconsense, fastme, filterCorrectionLayouts, filterCorrectionOverlaps, findErrors, findErrors-Dump, fmplot.py, gawk-5.0.1, generateCorrectionLayouts, genome_LenFilter_stats.pl, get_ANImatrix.pl, get_Mash_Matrix.pl, get_all_info_nucl.pl, get_all_info_orfs.pl, get_all_info_prot.pl, get_flag_relative_abundances_table.pl, get_genes_table.pl, gubbins, iterative_cdhit, loadCorrectedReads, loadErates, loadTrimmedReads, mergeRanges, meryl-import, meryl-lookup, mhapConvert, miniasm, minidot, mmapConvert, modeltest-ng, orthofinder, ovStoreBucketizer, ovStoreBuild, ovStoreConfig, ovStoreDump, ovStoreIndexer, ovStoreSorter, ovStoreStats, overlapAlign, overlapConvert, overlapImport, overlapInCore, overlapInCorePartition, overlapPair, pacbio_post_process, pal2nal.pl, pan_genome_assembly_statistics, pan_genome_core_alignment, pan_genome_post_analysis, pan_genome_reorder_spreadsheet, parallel_all_against_all_blastp, pgcgap, plot_3Dpie.R, prefixEditDistance-matchLimitGenerate, protein_alignment_from_nucleotides, query_pan_genome, raxml-ng, raxml-ng-mpi, roary, roary-create_pan_genome_plots.R, roary-pan_genome_reorder_spreadsheet, roary-query_pan_genome, roary-unique_genes_per_sample, run_gubbins.py, scoary, scoary_GUI, scriptlive, sequence, sickle, snippy, snippy-clean_full_aln, snippy-core, snippy-multi, snippy-vcf_extract_subs, snippy-vcf_report, snippy-vcf_to_tab, splitHaplotype, splitReads, sqStoreCreate, sqStoreDumpFASTQ, sqStoreDumpMetaData, tgStoreCompress, tgStoreDump, tgStoreFilter, tgStoreLoad, tgTigDisplay, transfer_annotation_to_groups, triangle2list.pl, trimReads, unicycler, unicycler_align, unicycler_check, unicycler_polish, unicycler_scrub, utgcns, vcf2scoary, vcfnormalizesvs, vcfnull2ref, vcfunphase, wtdbgConvert, yapp, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject |
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GITHUB
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quay.io/biocontainers/btyper3 |
shpc-registry automated BioContainers addition for btyper3 |
btyper3, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides |
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GITHUB
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quay.io/biocontainers/bubblegun |
singularity registry hpc automated addition for bubblegun |
BubbleGun, idle3.13, pydoc3.13, python3.13, python3.13-config |
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GITHUB
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quay.io/biocontainers/bucketcache |
shpc-registry automated BioContainers addition for bucketcache |
easy_install-2.7, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5 |
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GITHUB
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quay.io/biocontainers/bufet |
shpc-registry automated BioContainers addition for bufet |
bufet.bin, bufet.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/bugseq-porechop |
shpc-registry automated BioContainers addition for bugseq-porechop |
porechop, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/buildh |
shpc-registry automated BioContainers addition for buildh |
buildH, gsd, nc3tonc4, nc4tonc3, ncinfo, numba, pycc, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy |
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GITHUB
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quay.io/biocontainers/bumbershoot |
shpc-registry automated BioContainers addition for bumbershoot |
adjustScanRankerScoreByGroup, directag, idpAssemble, idpQonvert, idpQuery, myrimatch, pepitome, quameter, tagrecon |
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GITHUB
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quay.io/biocontainers/burrito-fillings |
shpc-registry automated BioContainers addition for burrito-fillings |
iptest3, iptest, ipython3, ipython, natsort, qhelpconverter, qwebengine_convert_dict, pygmentize, canbusutil, qgltf |
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GITHUB
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quay.io/biocontainers/burrito |
shpc-registry automated BioContainers addition for burrito |
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GITHUB
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quay.io/biocontainers/burst |
shpc-registry automated BioContainers addition for burst |
bcov2-strip, burst_linux_DB12, burst_linux_DB15, lingenome, t2gg |
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GITHUB
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quay.io/biocontainers/busco |
shpc-registry automated BioContainers addition for busco |
busco, busco_configurator.py, find, generate_plot.py, hmmc2, hmmerfm-exactmatch, locate, run-sepp.sh, run_abundance.py, run_sepp.py, run_tipp.py, run_tipp_tool.py, run_upp.py, seppJsonMerger.jar, split_sequences.py, updatedb, xargs, augustus, bam2hints, etraining, fastBlockSearch, filterBam, homGeneMapping, joingenes, prepareAlign, guppy, pplacer |
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GITHUB
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quay.io/biocontainers/buscolite |
singularity registry hpc automated addition for buscolite |
PF00225_full.blocks.txt, PF00225_seed.blocks.txt, add_name_to_gff3.pl, aln2wig, augustify.py, buscolite, executeTestCGP.py, extractAnno.py, findRepetitiveProtSeqs.py, get_loci_from_gb.pl, miniprot, pp_simScore, rename_species.pl, stringtie2fa.py, bamToWig.py, compare_masking.pl, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, merge_masking.pl, aa2nonred.pl, cdbfasta, cdbyank, compileSpliceCands, computeFlankingRegion.pl, eval_multi_gtf.pl, filterGenesIn.pl, findGffNamesInFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, gtf2aa.pl, gth2gtf.pl, setStopCodonFreqs.pl, utrrnaseq, SplicedAlignment.pm, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl |
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GITHUB
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quay.io/biocontainers/bustools |
shpc-registry automated BioContainers addition for bustools |
bustools, mirror_server, mirror_server_stop, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy |
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GITHUB
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quay.io/biocontainers/bwa-aln-interactive |
singularity registry hpc automated addition for bwa-aln-interactive |
bwa-aln-interactive |
|
GITHUB
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quay.io/biocontainers/bwa-mem2 |
shpc-registry automated BioContainers addition for bwa-mem2 |
bwa-mem2, bwa-mem2.avx, bwa-mem2.avx2, bwa-mem2.avx512bw, bwa-mem2.sse41, bwa-mem2.sse42 |
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GITHUB
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quay.io/biocontainers/bwa-meme |
singularity registry hpc automated addition for bwa-meme |
build_rmis_dna.sh, bwa-meme, bwa-meme-train-prmi, bwa-meme_mode1, bwa-meme_mode1.avx, bwa-meme_mode1.avx2, bwa-meme_mode1.avx512bw, bwa-meme_mode1.sse41, bwa-meme_mode1.sse42, bwa-meme_mode2, bwa-meme_mode2.avx, bwa-meme_mode2.avx2, bwa-meme_mode2.avx512bw, bwa-meme_mode2.sse41, bwa-meme_mode2.sse42, bwa-meme_mode3.avx, bwa-meme_mode3.avx2, bwa-meme_mode3.avx512bw, bwa-meme_mode3.sse41, bwa-meme_mode3.sse42 |
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GITHUB
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quay.io/biocontainers/bwa |
shpc-registry automated BioContainers addition for bwa |
bwa |
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GITHUB
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quay.io/biocontainers/bwakit |
shpc-registry automated BioContainers addition for bwakit |
bwa-postalt.js, fermi2, fermi2.pl, htsbox, ropebwt2, run-HLA, run-bwamem, run-gen-ref, samblaster, trimadap, typeHLA-selctg.js, typeHLA.js, typeHLA.sh, seqtk, perl5.32.0, k8, qualfa2fq.pl, xa2multi.pl, bwa, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl |
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GITHUB
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quay.io/biocontainers/bwameth |
shpc-registry automated BioContainers addition for bwameth |
bwameth.py, toolshed, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, bwa |
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GITHUB
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quay.io/biocontainers/bwapy |
shpc-registry automated BioContainers addition for bwapy |
bwamempy, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/bwise |
shpc-registry automated BioContainers addition for bwise |
bcalm, bgreat, btrim, bwise, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config, h5cc |
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GITHUB
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quay.io/biocontainers/bwread |
shpc-registry automated BioContainers addition for bwread |
tabulate, natsort, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config |
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GITHUB
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quay.io/biocontainers/bx-python |
shpc-registry automated BioContainers addition for bx-python |
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GITHUB
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quay.io/biocontainers/bxtools |
shpc-registry automated BioContainers addition for bxtools |
bxtools |
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GITHUB
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quay.io/biocontainers/byobu |
shpc-registry automated BioContainers addition for byobu |
|
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GITHUB
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quay.io/biocontainers/bzip2 |
shpc-registry automated BioContainers addition for bzip2 |
bzip2, bzip2recover |
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GITHUB
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quay.io/biocontainers/c-ares |
shpc-registry automated BioContainers addition for c-ares |
|
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GITHUB
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quay.io/biocontainers/c4counter |
singularity registry hpc automated addition for c4counter |
c4counter, sdust, paftools.js, minimap2, k8, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/cactus |
shpc-registry automated BioContainers addition for cactus |
3EdgeTests, _toil_mesos_executor, _toil_worker, bedSort, bigBedToBed, blossom5, blossom_randGraph.py, cPecanAlign, cPecanEm, cPecanLastz, cPecanLastz_D, cPecanLibTests, cPecanModifyHmm, cPecanRealign, cactus, cactus2hal-stitch.sh, cactus2hal.py, cactusAPITests, cactus_addReferenceCoordinates, cactus_analyseAssembly, cactus_bar, cactus_barTests, cactus_batch_mergeChunks, cactus_blast_chunkFlowerSequences, cactus_blast_chunkSequences, cactus_blast_convertCoordinates, cactus_blast_sortAlignments, cactus_caf, cactus_calculateMappingQualities, cactus_check, cactus_convertAlignmentsToInternalNames, cactus_coverage, cactus_covered_intervals, cactus_fastaGenerator, cactus_fasta_fragments.py, cactus_fasta_softmask_intervals.py, cactus_fillAdjacencies, cactus_filterSmallFastaSequences.py, cactus_getReferenceSeq, cactus_halGenerator, cactus_halGeneratorTests, cactus_makeAlphaNumericHeaders.py, cactus_mirrorAndOrientAlignments, cactus_normalisation, cactus_phylogeny, cactus_preprocess, cactus_reference, cactus_secondaryDatabase, cactus_setup, cactus_splitAlignmentOverlaps, cactus_stripUniqueIDs, cactus_workflow_convertAlignmentCoordinates, cactus_workflow_extendFlowers, cactus_workflow_flowerStats, cactus_workflow_getFlowers, cwltest, cwltoil, dbTestScript, docker_test_script, findRegionsExclusivelyInGroup, galaxy-tool-test, hal2assemblyHub.py, hal2chain, hal2fasta, hal2maf, hal2mafMP.py, hal4dExtract, hal4dExtractTest, halAddToBranch, halAlignedExtract, halAlignmentDepth, halApiTests, halAppendCactusSubtree, halAppendSubtree, halBranchMutations, halChainTests, halCoverage, halExtract, halHdf5Tests, halIndels, halLiftover, halLiftoverTests, halLodExtract, halLodInterpolate.py, halMafTests, halMaskExtract, halRandGen, halRemoveGenome, halRenameGenomes, halRenameSequences, halReplaceGenome, halSetMetadata, halSingleCopyRegionsExtract, halSnps, halStats, halSummarizeMutations, halSynteny, halTestGen, halTreeMutations.py, halTreeNIBackground.py, halTreeNIConservation.py, halTreeNITurnover.py, halUpdateBranchLengths, halValidate, halWiggleLiftover, halWriteNucleotides, jobTreeKill, jobTreeRun, jobTreeStats, jobTreeStatus, jobTreeTest_Dependencies.py, kccachetest, kcdirmgr, kcdirtest, kcforestmgr, kcforesttest, kcgrasstest, kchashmgr, kchashtest, kclangctest, kcpolymgr, kcpolytest, kcprototest, kcstashtest, kctreemgr, kctreetest, kcutilmgr, kcutiltest, ktremotemgr, ktremotetest, ktserver, kttimedmgr, kttimedtest, ktutilmgr, ktutilserv, ktutiltest, maf2hal, matchGraph.py, matchingAndOrderingTests, mock-cwl-runner, mulled-build, mulled-build-channel, mulled-build-files, mulled-build-tool, mulled-search, multijob, mwmatching.py, referenceTests, scriptTreeTest_Sort.py, scriptTreeTest_Wrapper.py, scriptTreeTest_Wrapper2.py, sonLibTests, sonLib_cigarTest, sonLib_daemonize.py, sonLib_fastaCTest, sonLib_kvDatabaseTest, stCafTests, stPinchesAndCactiTests, toil, toil-cwl-runner, toil-wdl-runner, wsdump.py, cwltool, pyrsa-decrypt-bigfile, pyrsa-encrypt-bigfile, avro, schema-salad-doc, schema-salad-tool, bedToBigBed, faToTwoBit, asadmin, bundle_image |
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GITHUB
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quay.io/biocontainers/cadd-scripts |
shpc-registry automated BioContainers addition for cadd-scripts |
cadd-install.sh, cadd.sh, stone, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file |
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GITHUB
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quay.io/biocontainers/cafe |
shpc-registry automated BioContainers addition for cafe |
cafe5 |
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GITHUB
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quay.io/biocontainers/cage |
shpc-registry automated BioContainers addition for cage |
bamdump, cage, cage-classify.py, bamtools, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/cagee |
singularity registry hpc automated addition for cagee |
cagee, diffmat_precalc, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics |
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GITHUB
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quay.io/biocontainers/calcs |
shpc-registry automated BioContainers addition for calcs |
calcs, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/calib |
shpc-registry automated BioContainers addition for calib |
calib, calib_cons |
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GITHUB
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quay.io/biocontainers/calisp |
singularity registry hpc automated addition for calisp |
calisp, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, f2py3.11, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, 2to3-3.11, idle3.11, pydoc3.11 |
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GITHUB
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quay.io/biocontainers/calitas |
shpc-registry automated BioContainers addition for calitas |
calitas, appletviewer, idlj, orbd, schemagen, servertool, tnameserv, wsgen, wsimport, xjc, jaotc |
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GITHUB
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quay.io/biocontainers/callerpp |
singularity registry hpc automated addition for callerpp |
callerpp, spoa |
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GITHUB
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quay.io/biocontainers/callingcardstools |
singularity registry hpc automated addition for callingcardstools |
callingcardstools, dul-receive-pack, dul-upload-pack, dulwich, keyring, pkginfo, poetry, pyproject-build, python-build, virtualenv, doesitcache, jsonschema, dbus-cleanup-sockets, dbus-daemon, dbus-launch, dbus-monitor, dbus-run-session, dbus-send, dbus-test-tool, dbus-update-activation-environment, dbus-uuidgen, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/callstate |
shpc-registry automated BioContainers addition for callstate |
callstate, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/calour |
shpc-registry automated BioContainers addition for calour |
attr, balsam, esdcompat, getfattr, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, jupyter-dejavu, jupyter-execute, lprodump, lrelease-pro, lupdate-pro, meshdebug, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, send2trash, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set |
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GITHUB
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quay.io/biocontainers/cameo |
shpc-registry automated BioContainers addition for cameo |
cameo, grako, httpx, isympy, jupyter-dejavu, jupyter-execute, send2trash, cmark, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run, iptest3 |
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GITHUB
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quay.io/biocontainers/cami-amber |
shpc-registry automated BioContainers addition for cami-amber |
amber.py, setup.py, version.py, bokeh, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.7, opj_compress, opj_decompress, opj_dump |
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GITHUB
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quay.io/biocontainers/cami-opal |
shpc-registry automated BioContainers addition for cami-opal |
opal.py, opal_stats.py, opal_workflow.py, setup.py, version.py, wsdump.py, dendropy-format, doesitcache, iptest3, bokeh, sumlabels.py, sumtrees.py, iptest, ipython3, ipython, cygdb |
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GITHUB
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quay.io/biocontainers/camlhmp |
singularity registry hpc automated addition for camlhmp |
archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, camlhmp, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, executor, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gbf2fsa, gbf2ref, gm2ranges, gm2segs, ini2xml, jsonl2xml, just-first-key, nhance.sh, pma2apa, pma2pme, pmc2bioc, pmc2info, quote-grouped-elements, ref2pmid, refseq-nm-cds, scn2xml, stream-local, test-pmc-index, toml2xml, yaml2xml, rich-click, blastn_vdb, tblastn_vdb, markdown-it, coloredlogs, test_pcre, humanfriendly, pigz, unpigz, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh |
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GITHUB
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quay.io/biocontainers/campyagainst |
singularity registry hpc automated addition for campyagainst |
campyagainst, fastANI, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/campygstyper |
singularity registry hpc automated addition for campygstyper |
campygstyper, fastANI, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/cancerit-allelecount |
shpc-registry automated BioContainers addition for cancerit-allelecount |
alleleCounter, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/cannoli |
shpc-registry automated BioContainers addition for cannoli |
beeline, beeline.cmd, cannoli-shell, cannoli-submit, csv-import, docker-image-tool.sh, elasticurl, elasticurl_cpp, elastipubsub, find-spark-home, find-spark-home.cmd, find_spark_home.py, load-spark-env.cmd, load-spark-env.sh, orc-memory, orc-scan, pyspark, pyspark.cmd, pyspark2.cmd, run-example, run-example.cmd, spark-class, spark-class.cmd, spark-class2.cmd, spark-shell, spark-shell.cmd, spark-shell2.cmd, spark-sql, spark-sql.cmd, spark-sql2.cmd, spark-submit, spark-submit.cmd, spark-submit2.cmd, sparkR, sparkR.cmd, sparkR2.cmd, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin |
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GITHUB
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quay.io/biocontainers/canopy |
singularity registry hpc automated addition for canopy |
cc.bin |
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GITHUB
|
quay.io/biocontainers/cansam |
shpc-registry automated BioContainers addition for cansam |
samcat, samcount, samgroupbyname, samhead, samsort, samsplit |
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GITHUB
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quay.io/biocontainers/cansnper |
shpc-registry automated BioContainers addition for cansnper |
|
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GITHUB
|
quay.io/biocontainers/cansnper2 |
shpc-registry automated BioContainers addition for cansnper2 |
CanSNPer2, CanSNPer2-database, CanSNPer2-download, CanSNPer2-test, flextaxd, flextaxd-create, progressiveMauve, ete3, compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util |
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GITHUB
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quay.io/biocontainers/canu |
shpc-registry automated BioContainers addition for canu |
alignGFA, bogart, canu, canu-time, canu.defaults, correctOverlaps, draw-tig, dumpBlob, edalign, errorEstimate, falconsense, filterCorrectionLayouts, filterCorrectionOverlaps, findErrors, findErrors-Dump, fixErrors, generateCorrectionLayouts, layoutReads, loadCorrectedReads, loadErates, loadTrimmedReads, mergeRanges, mhapConvert, mmapConvert, ovStoreBucketizer, ovStoreBuild, ovStoreConfig, ovStoreDump, ovStoreIndexer, ovStoreSorter, ovStoreStats, overlapAlign, overlapCheck, overlapConvert, overlapImport, overlapInCore, overlapInCorePartition, overlapPair, prefixEditDistance-matchLimitGenerate, splitHaplotype, splitReads, sqStoreCreate, sqStoreDumpFASTQ, sqStoreDumpMetaData, tgStoreCompress, tgStoreDump, tgStoreLoad, tgTigDisplay, trimReads, utgcns, meryl, chrpath, gnuplot, xkbcli, pg_config, sdust, qdistancefieldgenerator, qmlpreview, qvkgen, paftools.js |
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GITHUB
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quay.io/biocontainers/canvas |
shpc-registry automated BioContainers addition for canvas |
Canvas, EvaluateCNV |
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GITHUB
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quay.io/biocontainers/cap3 |
shpc-registry automated BioContainers addition for cap3 |
cap3, formcon |
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GITHUB
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quay.io/biocontainers/capc-map |
shpc-registry automated BioContainers addition for capc-map |
capC-MAP, capCdigestfastq, capClocation2fragment, capCmain, capCpair2bg, capCpileup2binned, cutadapt, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect |
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GITHUB
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quay.io/biocontainers/capcruncher |
shpc-registry automated BioContainers addition for capcruncher |
bq, capcruncher, csv-import, docker-credential-gcloud, fetchChromSizes, gcloud, ice, orc-memory, orc-scan, rich-click, time, timezone-dump, trim_galore, gsutil, multiqc, flash, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, cooler |
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GITHUB
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quay.io/biocontainers/caper |
shpc-registry automated BioContainers addition for caper |
autouri, aws, aws.cmd, aws_bash_completer, aws_completer, aws_zsh_completer.sh, caper, create_instance.sh, miniwdl, pygtail, pyhocon, run_mysql_server_docker.sh, run_mysql_server_singularity.sh, wsdump.py, pyrsa-decrypt-bigfile, pyrsa-encrypt-bigfile, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, coloredlogs, humanfriendly, jp.py, py.test |
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GITHUB
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quay.io/biocontainers/captus |
singularity registry hpc automated addition for captus |
Xcalcmem.sh, bloomfilterparser.sh, captus_assembly, clipkit, f2py3.11, falco, 2to3-3.11, idle3.11, kmutate.sh, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, pydoc3.11, python3.11, python3.11-config, runhmm.sh, megahit, megahit_toolkit, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, sketchblacklist2.sh, splitribo.sh, addssu.sh, adjusthomopolymers.sh, analyzeaccession.sh, analyzegenes.sh |
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GITHUB
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quay.io/biocontainers/card_trick |
shpc-registry automated BioContainers addition for card_trick |
card-trick, pronto, f2py3.8, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/carna |
shpc-registry automated BioContainers addition for carna |
LocARNA_RNAz.pm, RNAz.pm, all-interval, aln-seqs.pl, aln2fa.pl, alnsel.pl, alpha, average-dot.pl, bacp, bibd, bin-packing, black-hole, car-sequencing, carna, carna.pl, cartesian-heart, colored-matrix, crew, crossword, crowded-chess, descartes-folium, dominating-queens, domino, donald, dot2pp, efpa, eq20, exparna_p, exploc_p, fzn-gecode, gen-reliab-dot.pl, golf, golomb-ruler, graph-color, grocery, hamming, ind-set, kakuro, knights, langford-number, locarna, locarna-mea.pl, locarna-motif-scan, locarna_deviation, locarna_p, locarna_rnafold_pp, locarnap-predict-and-plot.pl, locarnap-realign-all.pl, locarnap-revcomp.pl, locarnap-revisit-RNAz-hits.pl, locarnap_fit, locarnate, magic-sequence, magic-square, minesweeper, mlocarna, mlocarna_nnames, money, multi-bin-packing, mzn-gecode, nonogram, open-shop, ortho-latin, partition, pentominoes, perfect-square, photo, plot-bmprobs, pp2dot, qcp, queen-armies, queens, radiotherapy, reliability-profile.pl, ribosum2cc, sat, schurs-lemma, sparse, sports-league, steel-mill, steiner, sudoku, tsp, warehouses, word-square, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex |
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GITHUB
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quay.io/biocontainers/carnac-lr |
shpc-registry automated BioContainers addition for carnac-lr |
CARNAC-LR, CARNAC_to_fasta, CARNAC_to_fasta.py, paf_to_CARNAC.py, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/carpedeam |
singularity registry hpc automated addition for carpedeam |
carpedeam, gawk-5.3.0, gawkbug, awk, gawk |
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GITHUB
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quay.io/biocontainers/cartools |
singularity registry hpc automated addition for cartools |
CARTools.py, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim, wgsim_eval.pl, samtools, 2to3-3.10, idle3.10, pydoc3.10 |
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GITHUB
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quay.io/biocontainers/carveme |
singularity registry hpc automated addition for carveme |
acpl, amk_ccc, amk_fft2, amk_grf, amk_hy, amk_m2, amk_p2, atst, benchmark, build_universe, carve, curate_universe, dltest, gapfill, gbase, gcv, gmk_hy, gmk_m2, gmk_m3, gmk_msh, gmk_ub2, gmtst, gord, gotst, gscat, gtst, ipopt, ipopt_sens, isql, iusql, mcv, merge_community, mmk_m2, mmk_m3, mord, mtst, odbc_config, odbcinst, perl5.22.2, scip, slencheck, tableproxy64, gmap, blastn_vdb, tblastn_vdb, isympy, uuid, uuid-config, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis |
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GITHUB
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quay.io/biocontainers/cas-offinder |
shpc-registry automated BioContainers addition for cas-offinder |
bugpoint, c-index-test, cas-offinder, ccmake, clang, clang++, clang-5.0, clang-check, clang-cl, clang-cpp, clang-format, clang-import-test, clang-offload-bundler, clang-rename, cmake, cpack, ctest, ed2k-link, git-clang-format, gost-hash, has160-hash, hwloc-annotate, hwloc-assembler, hwloc-assembler-remote, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distances, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, llc, lli, llvm-ar, llvm-as, llvm-bcanalyzer, llvm-c-test, llvm-cat, llvm-config, llvm-cov, llvm-cvtres, llvm-cxxdump, llvm-cxxfilt, llvm-diff, llvm-dis, llvm-dlltool, llvm-dsymutil, llvm-dwarfdump, llvm-dwp, llvm-extract, llvm-lib, llvm-link, llvm-lto, llvm-lto2, llvm-mc, llvm-mcmarkup, llvm-modextract, llvm-mt, llvm-nm, llvm-objdump, llvm-opt-report, llvm-pdbutil, llvm-profdata, llvm-ranlib, llvm-readelf, llvm-readobj, llvm-rtdyld, llvm-size, llvm-split, llvm-stress, llvm-strings, llvm-symbolizer, llvm-tblgen, llvm-xray, lstopo, lstopo-no-graphics, magnet-link, obj2yaml, opt, poclcc, rhash, sancov, sanstats, scan-build, scan-view, sfv-hash, tiger-hash, tth-hash, verify-uselistorder, whirlpool-hash, yaml2obj, libtoolize, libtool, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/cascade-config |
singularity registry hpc automated addition for cascade-config |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, jsonschema, python3.1 |
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GITHUB
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quay.io/biocontainers/cassiopee |
shpc-registry automated BioContainers addition for cassiopee |
cassiopee, cassiopeeknife, gflags_completions.sh, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/cassiopeia |
singularity registry hpc automated addition for cassiopeia |
cassiopeia-preprocess, ccphylo, itol, itolexport, pandoc-lua, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, shortuuid, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, jupyter-execute, jupyter-dejavu, mpg123, mpg123-id3dump, mpg123-strip, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, mpicalc, yat2m, pandoc-server, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, balsam, lprodump |
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GITHUB
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quay.io/biocontainers/cassis |
shpc-registry automated BioContainers addition for cassis |
cassis, lastz, lastz_32, lastz_D, perl5.32.0, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500, gslj, gslp, gsnd |
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GITHUB
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quay.io/biocontainers/cat |
shpc-registry automated BioContainers addition for cat |
CAT, bzcat, lz4cat, lzcat, xzcat, zstdcat, diamond, prodigal, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/catch |
shpc-registry automated BioContainers addition for catch |
analyze_probe_coverage.py, design.py, design_large.py, design_naively.py, pool.py, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/catch_chimera |
shpc-registry automated BioContainers addition for catch_chimera |
CATCh_v1.run, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/catfasta2phyml |
singularity registry hpc automated addition for catfasta2phyml |
catfasta2phyml |
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GITHUB
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quay.io/biocontainers/cath-tools |
shpc-registry automated BioContainers addition for cath-tools |
cath-assign-domains, cath-cluster, cath-map-clusters, cath-refine-align, cath-resolve-hits, cath-score-align, cath-ssap, cath-superpose |
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GITHUB
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quay.io/biocontainers/cazy_webscraper |
shpc-registry automated BioContainers addition for cazy_webscraper |
cazy_webscraper, cw_extract_db_seqs, cw_get_genbank_seqs, cw_get_genomics, cw_get_gtdb_taxs, cw_get_ncbi_taxs, cw_get_pdb_structures, cw_get_uniprot_data, cw_query_database, xml2-config.bak, normalizer, tqdm, xslt-config, xsltproc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1 |
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GITHUB
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quay.io/biocontainers/cblaster |
shpc-registry automated BioContainers addition for cblaster |
cblaster, clinker, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, diamond, faidx, normalizer, chardetect, f2py3.9 |
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GITHUB
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quay.io/biocontainers/ccat |
shpc-registry automated BioContainers addition for ccat |
CCAT |
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GITHUB
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quay.io/biocontainers/ccmetagen |
shpc-registry automated BioContainers addition for ccmetagen |
CCMetagen.py, CCMetagen_extract_seqs.py, CCMetagen_merge.py, kma, kma_index, kma_shm, kma_update, ktClassifyBLAST, ktGetContigMagnitudes, ktGetLCA, ktGetLibPath, ktGetTaxIDFromAcc, ktGetTaxInfo, ktImportBLAST, ktImportDiskUsage, ktImportEC, ktImportFCP |
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GITHUB
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quay.io/biocontainers/ccne |
singularity registry hpc automated addition for ccne |
alignmentSieve, bamCompare, bamCoverage, bamPEFragmentSize, bigwigCompare, ccne-acc, ccne-fast, computeGCBias, computeMatrix, computeMatrixOperations, correctGCBias, deeptools, estimateReadFiltering, estimateScaleFactor, hts_AdapterTrimmer, hts_CutTrim, hts_LengthFilter, hts_NTrimmer, hts_Overlapper, hts_PolyATTrim, hts_Primers, hts_QWindowTrim, hts_SeqScreener, hts_Stats, hts_SuperDeduper, multiBamSummary, multiBigwigSummary, plotCorrelation, plotCoverage, plotEnrichment, plotFingerprint, plotHeatmap, plotPCA, plotProfile, faToTwoBit, my_print_defaults, mysql_config, perror, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl, sort-table, spdi2tbl |
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GITHUB
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quay.io/biocontainers/ccphylo |
singularity registry hpc automated addition for ccphylo |
ccphylo |
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GITHUB
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quay.io/biocontainers/ccsmeth |
singularity registry hpc automated addition for ccsmeth |
ccs, ccs-alt, ccsmeth, pbmm2, torchrun, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, tqdm, futurize, pasteurize, fasta-sanitize.pl, shiftBed, plot-ampliconstats, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed |
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GITHUB
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quay.io/biocontainers/cctk |
singularity registry hpc automated addition for cctk |
cctk, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, minced, dendropy-format, jpackage, sumlabels.py, sumtrees.py, cups-config, ippeveprinter, ipptool, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh |
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GITHUB
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quay.io/biocontainers/cd-hit-auxtools |
shpc-registry automated BioContainers addition for cd-hit-auxtools |
cd-hit-dup, cd-hit-lap, read-linker |
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GITHUB
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quay.io/biocontainers/cd-hit |
shpc-registry automated BioContainers addition for cd-hit |
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GITHUB
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quay.io/biocontainers/cdbtools |
shpc-registry automated BioContainers addition for cdbtools |
cdbfasta, cdbyank |
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GITHUB
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quay.io/biocontainers/cdhit-reader |
singularity registry hpc automated addition for cdhit-reader |
cdhit-compare, cdhit-parser, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div, cd-hit-div.pl, cd-hit-est-2d, cd-hit-para.pl, clstr2tree.pl, clstr2txt.pl, clstr2xml.pl, clstr_cut.pl, clstr_merge.pl, clstr_merge_noorder.pl, clstr_quality_eval.pl, clstr_quality_eval_by_link.pl, clstr_reduce.pl, clstr_renumber.pl, clstr_rep.pl, clstr_reps_faa_rev.pl, clstr_rev.pl |
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GITHUB
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quay.io/biocontainers/cdk-inchi-to-svg |
shpc-registry automated BioContainers addition for cdk-inchi-to-svg |
cdk-inchi-to-svg, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/cdna_cupcake |
shpc-registry automated BioContainers addition for cdna_cupcake |
BED.py, BioReaders.py, MPileUpVariantCaller.py, MummerSNPReader.py, SAMMPileUpReader.py, STAR.py, STARwrapper.py, SeqReaders.py, SeqSplitter.py, UMI_BC_error_correct.py, VariantPhaseCleaner.py, VariantPhaser.py, alignment_stats_from_sam.py, calc_expected_accuracy_from_fastq.py, calc_probe_hit_from_sam.py, chain_fusion_samples.py, chain_samples.py, clip_out_UMI_cellBC.py, collapse_isoforms_by_sam.py, collate_FLNC_gene_info.py, coordinate_mapper.py, create_fake_genome.py, dedup_FLNC_per_cluster.py, demux_by_barcode_for_subsampling.py, demux_by_barcode_groups.py, demux_isoseq2_no_genome.py, demux_isoseq_no_genome.py, demux_isoseq_with_genome.py, err_correct_w_genome.py, fa2fq.py, filter_away_subset.py, filter_by_count.py, filter_lq_isoforms.py, fq2fa.py, fusion_finder.py, get_abundance_post_collapse.py, get_seq_stats.py, get_seqs_from_list.py, group_ORF_sequences.py, ice_pbdagcon2.py, make_file_for_subsampling_from_collapsed.py, match_w_annotation.py, parse_matchAnnot.py, picking_up_ice2.py, randomly_select_sequences.py, revcomp.py, run_IceArrow2.py, run_IceInit2.py, run_IceIterative2.py, run_IcePartial2.py, run_phaser.py, run_preCluster.py, sam_to_bam.py, sam_to_collapsed_gff.py, sam_to_gff3.py, scrub_sample_GFF_junctions.py, simulate.py, simulate_phasing_data_from_fasta.py, snps_to_vcf.py, subsample.py, subsample_with_category.py, summarize_gmap_sam.py, summarize_sample_GFF_junctions.py, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
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GITHUB
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quay.io/biocontainers/cdo |
shpc-registry automated BioContainers addition for cdo |
bufr_compare, bufr_compare_dir, bufr_copy, bufr_count, bufr_dump, bufr_filter, bufr_get, bufr_index_build, bufr_ls, bufr_set, cdo, codes_bufr_filter, codes_count, codes_info, codes_parser, codes_split_file, grib2ppm, grib_compare, grib_copy, grib_count, grib_dump, grib_filter, grib_get, grib_get_data, grib_histogram, grib_index_build, grib_ls, grib_merge, grib_set, grib_to_netcdf, gts_compare, gts_copy, gts_count, gts_dump, gts_filter, gts_get, gts_ls, imgcmp, imginfo, jasper, jiv, metar_compare, metar_copy, metar_dump, metar_filter, metar_get, metar_ls, tigge_check, aec, uuid, uuid-config, projsync, udunits2, invgeod, invproj, projinfo, cct, gie |
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GITHUB
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quay.io/biocontainers/ceas |
shpc-registry automated BioContainers addition for ceas |
build_genomeBG, ceas, gca, sitepro, my_print_defaults, mysql_config, perror, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/cell-types-analysis |
shpc-registry automated BioContainers addition for cell-types-analysis |
bats, build_cell_ontology_dict.R, cell_types_utils.R, check_labels.R, combine_tool_outputs.R, downsample_cells.R, get_consensus_output.R, get_empirical_dist.R, get_tool_performance_table.R, get_tool_pvals.R, label_analysis_run_post_install_tests.bats, label_analysis_run_post_install_tests.sh, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/cell2cell |
singularity registry hpc automated addition for cell2cell |
gseapy, runxlrd.py, h5tools_test_utils, scanpy, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, h5delete, numba, natsort, f2py3.8, tqdm, fonttools, pyftmerge |
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GITHUB
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quay.io/biocontainers/cellbender |
singularity registry hpc automated addition for cellbender |
cellbender, jupyter-contrib, jupyter-contrib-nbextension, jupyter-nbclassic, jupyter-nbclassic-bundlerextension, jupyter-nbclassic-extension, jupyter-nbclassic-serverextension, jupyter-nbextensions_configurator, jupyter-server, loompy, matplotlib, qtpy, jupyter-console, wsdump, jupyter-qtconsole, jupyter-execute, jupyter-dejavu, send2trash, torchrun, ninja, jupyter-bundlerextension, jupyter-nbextension, jupyter-serverextension, convert-caffe2-to-onnx, convert-onnx-to-caffe2, jupyter-notebook, jupyter-nbconvert, iptest3, jupyter-kernel, jupyter-kernelspec, jupyter-run, iptest, curve_keygen, pt2to3, ptdump, ptrepack, pttree |
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GITHUB
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quay.io/biocontainers/cellpose |
singularity registry hpc automated addition for cellpose |
androiddeployqt6, asn1Coding, asn1Decoding, asn1Parser, assistant6, cellpose, cllayerinfo, designer6, exr2aces, exrenvmap, exrheader, exrinfo, exrmakepreview, exrmaketiled, exrmultipart, exrmultiview, exrstdattr, ffmpeg, ffprobe, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, h264dec, h264enc, imgcmp, imginfo, jasper, jiv, linguist6, opencv_annotation, opencv_interactive-calibration, opencv_model_diagnostics, opencv_version, opencv_visualisation, opencv_waldboost_detector, p11-kit, p11tool, pixeltool6, protoc-25.3.0, qdbus6, qdbusviewer6, qdistancefieldgenerator6, qdoc6, qmake6, qml6, qmleasing6, qmlls6, qmlpreview6, qmlscene6, qt6.conf, qtdiag6, qtplugininfo6, qtpy, rav1e, roifile, setup_vars_opencv4.sh, torch_shm_manager, trust, vpxdec, vpxenc, x264, x265, SvtAv1DecApp, SvtAv1EncApp, dav1d, tiff2fsspec, aomdec, aomenc, dask, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, imageio_download_bin, imageio_remove_bin, skivi, h5tools_test_utils, mpg123, mpg123-id3dump, mpg123-strip |
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GITHUB
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quay.io/biocontainers/cellprofiler-core |
shpc-registry automated BioContainers addition for cellprofiler-core |
aomdec, aomenc, dav1d, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng |
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GITHUB
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quay.io/biocontainers/cellprofiler |
shpc-registry automated BioContainers addition for cellprofiler |
|
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GITHUB
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quay.io/biocontainers/cellqc |
singularity registry hpc automated addition for cellqc |
cellqc, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, stone, aec, plac_runner.py, yte, scanpy, docutils, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, geosop, cmark, pulptest, cbc, clp, geos-config, snakemake, snakemake-bash-completion, jp.py, tabulate, numba, pycc |
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GITHUB
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quay.io/biocontainers/cellrank-krylov |
shpc-registry automated BioContainers addition for cellrank-krylov |
acpl, amk_ccc, amk_fft2, amk_grf, amk_hy, amk_m2, amk_p2, atst, dggath, dgmap, dgord, dgpart, dgscat, dgtst, dunamai, gbase, gcv, gmk_hy, gmk_m2, gmk_m3, gmk_msh, gmk_ub2, gmtst, gord, gotst, gout, gpart, gscat, gtst, loompy, mcv, mmk_m2, mmk_m3, mord, mtest, mtst, parmetis, pddrive, pddrive_spawn, pometis, ptest, scotch_esmumps, gmap, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, scanpy, oshCC |
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GITHUB
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quay.io/biocontainers/cellrank |
shpc-registry automated BioContainers addition for cellrank |
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GITHUB
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quay.io/biocontainers/cellsnake |
singularity registry hpc automated addition for cellsnake |
ccmake, cellsnake, celltypist, cmake, cpack, ctest, ed2k-link, edonr256-hash, edonr512-hash, gost12-256-hash, gost12-512-hash, has160-hash, kaleido, magnet-link, mathjax-path, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, rhash, sfv-hash, tiger-hash, tth-hash, whirlpool-hash, kraken2, kraken2-build, kraken2-inspect, markdown-it, pg_amcheck, rsync-ssl, rsync, hwloc-gather-cpuid, pdfsig, xxh128sum, xxh32sum, xxh64sum, gdal_create, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo |
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GITHUB
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quay.io/biocontainers/cellsnp-lite |
shpc-registry automated BioContainers addition for cellsnp-lite |
cellsnp-lite, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/celltypist |
shpc-registry automated BioContainers addition for celltypist |
celltypist, scanpy, docutils, igraph, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, cmpfillin, gpmetis |
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GITHUB
|
quay.io/biocontainers/cellxgene |
shpc-registry automated BioContainers addition for cellxgene |
cellxgene, gunicorn, flask, jp.py, numba, pycc, natsort, normalizer, f2py3.10, h5clear, h5format_convert, h5watch |
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GITHUB
|
quay.io/biocontainers/cenote-taker3 |
singularity registry hpc automated addition for cenote-taker3 |
MitoHighConfidenceFilter, a3m_database_extract, a3m_database_filter, a3m_database_reduce, a3m_extract, a3m_reduce, annot-tsv, archspec, cenote_main.sh, cenotetaker3, cstranslate, dummy_template.sbt, ffindex_apply, ffindex_build, ffindex_from_fasta, ffindex_from_fasta_with_split, ffindex_get, ffindex_modify, ffindex_order, ffindex_reduce, ffindex_unpack, find, gawk-5.3.0, gawkbug, get_ct3_dbs, hhalign, hhalign_omp, hhblits, hhblits_ca3m, hhblits_omp, hhconsensus, hhfilter, hhmake, hhsearch, hhsearch_omp, locate, phanotate.py, pyrodigal, pyrodigal-gv, updatedb, xargs, tbl2asn-test, EukHighConfidenceFilter, aria2c, covels-SE, coves-SE, eufindtRNA, fasta2gsi, sstofa, tRNAscan-SE, tRNAscan-SE.conf, trnascan-1.4, fix-sqn-date, egrep, faketime, fgrep, grep, real-tbl2asn, seqkit, tbl2asn, idn, mmseqs, cmalign, cmbuild, cmcalibrate, cmconvert |
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GITHUB
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quay.io/biocontainers/centreseq |
shpc-registry automated BioContainers addition for centreseq |
|
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GITHUB
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quay.io/biocontainers/centrifuge-core |
shpc-registry automated BioContainers addition for centrifuge-core |
centrifuge, centrifuge-BuildSharedSequence.pl, centrifuge-RemoveEmptySequence.pl, centrifuge-RemoveN.pl, centrifuge-build, centrifuge-build-bin, centrifuge-class, centrifuge-compress.pl, centrifuge-download, centrifuge-inspect, centrifuge-inspect-bin, centrifuge-kreport, centrifuge-sort-nt.pl, tar, idn2, wget, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/centrifuge |
shpc-registry automated BioContainers addition for centrifuge |
|
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GITHUB
|
quay.io/biocontainers/centrifuger |
singularity registry hpc automated addition for centrifuger |
centrifuger, centrifuger-build, centrifuger-download, centrifuger-inspect, centrifuger-kreport, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tar, idn2, wget |
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GITHUB
|
quay.io/biocontainers/centroid_rna_package |
shpc-registry automated BioContainers addition for centroid_rna_package |
centroid_alifold, centroid_fold, centroid_homfold, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold |
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GITHUB
|
quay.io/biocontainers/centrosome |
shpc-registry automated BioContainers addition for centrosome |
aomdec, aomenc, dav1d, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng |
|
GITHUB
|
quay.io/biocontainers/cesar |
singularity registry hpc automated addition for cesar |
cesar |
|
GITHUB
|
quay.io/biocontainers/cesm |
shpc-registry automated BioContainers addition for cesm |
addr2line, apr-1-config, apu-1-config, ar, as, c++filt, ccmake, cmake, cpack, create_clone, create_newcase, create_test, ctest, dirmngr, dirmngr-client, dumpsexp, dwp, ed2k-link, edonr256-hash, edonr512-hash, elfedit, gold, gost12-256-hash, gost12-512-hash, gpg, gpg-agent, gpg-card, gpg-connect-agent, gpg-error, gpg-error-config, gpg-wks-client, gpg-wks-server, gpgconf, gpgparsemail, gpgrt-config, gpgscm, gpgsm, gpgsplit, gpgtar, gpgv, gprof, h5pcc, h5perf, h5pfc, has160-hash, hmac256, kbxutil, ksba-config, ld, ld.bfd, ld.gold, libassuan-config, libgcrypt-config, magnet-link, mpicalc, nf-config, nm, npth-config, ntbtls-config, objcopy, objdump, ph5diff, query_config, query_testlists, ranlib, readelf, rhash, sfv-hash, size, strings, strip, svn, svnadmin, svnbench, svndumpfilter, svnfsfs, svnlook, svnmucc, svnrdump, svnserve, svnsync, svnversion, tcsh, tiger-hash, tth-hash, watchgnupg, whirlpool-hash, yat2m, mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, db_convert, mpifort, mpic++ |
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GITHUB
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quay.io/biocontainers/cgat-apps |
shpc-registry automated BioContainers addition for cgat-apps |
bq, cgat, docker-credential-gcloud, gcloud, time, gsutil, egrep, fgrep, grep, wigToBigWig, bedGraphToBigWig, bedToBigBed, basenc, b2sum, base32 |
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GITHUB
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quay.io/biocontainers/cgat-core |
shpc-registry automated BioContainers addition for cgat-core |
time, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
|
GITHUB
|
quay.io/biocontainers/cgat-daisy |
shpc-registry automated BioContainers addition for cgat-daisy |
bq, daisy, docker-credential-gcloud, gcloud, time, gsutil, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod |
|
GITHUB
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quay.io/biocontainers/cgat-pipelines-nosetests |
shpc-registry automated BioContainers addition for cgat-pipelines-nosetests |
cgatreport-build, cgatreport-clean, cgatreport-get, cgatreport-profile, cgatreport-quickstart, cgatreport-serve, cgatreport-test, innochecksum, msql2mysql, myisam_ftdump, myisamchk, myisamlog, myisampack, mysql, mysql_client_test, mysql_convert_table_format, mysql_find_rows, mysql_fix_extensions, mysql_plugin, mysql_secure_installation, mysql_setpermission, mysql_tzinfo_to_sql, mysql_upgrade, mysql_waitpid, mysql_zap, mysqlaccess, mysqlaccess.conf, mysqladmin, mysqlbinlog, mysqlbug, mysqlcheck, mysqld, mysqld_multi, mysqld_safe, mysqldump, mysqldumpslow, mysqlhotcopy, mysqlimport, mysqlshow, mysqlslap, mysqltest, pep8, replace, resolve_stack_dump, resolveip, transformseq, weblogo, wigToBigWig, bedGraphToBigWig, bedToBigBed, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot |
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GITHUB
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quay.io/biocontainers/cgat-report |
shpc-registry automated BioContainers addition for cgat-report |
cgatreport-build, cgatreport-clean, cgatreport-get, cgatreport-profile, cgatreport-quickstart, cgatreport-serve, cgatreport-test, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, nosetests, pybabel, bokeh, rst2html4.py, rst2html5.py, rst2html.py |
|
GITHUB
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quay.io/biocontainers/cgat-scripts-nosetests |
shpc-registry automated BioContainers addition for cgat-scripts-nosetests |
innochecksum, msql2mysql, myisam_ftdump, myisamchk, myisamlog, myisampack, mysql, mysql_client_test, mysql_convert_table_format, mysql_find_rows, mysql_fix_extensions, mysql_plugin, mysql_secure_installation, mysql_setpermission, mysql_tzinfo_to_sql, mysql_upgrade, mysql_waitpid, mysql_zap, mysqlaccess, mysqlaccess.conf, mysqladmin, mysqlbinlog, mysqlbug, mysqlcheck, mysqld, mysqld_multi, mysqld_safe, mysqldump, mysqldumpslow, mysqlhotcopy, mysqlimport, mysqlshow, mysqlslap, mysqltest, pep8, replace, resolve_stack_dump, resolveip, transformseq, weblogo, wigToBigWig, bedGraphToBigWig, bedToBigBed, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot |
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GITHUB
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quay.io/biocontainers/cgat-scripts |
shpc-registry automated BioContainers addition for cgat-scripts |
|
|
GITHUB
|
quay.io/biocontainers/cgatcore |
shpc-registry automated BioContainers addition for cgatcore |
bq, docker-credential-gcloud, gcloud, time, gsutil, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod |
|
GITHUB
|
quay.io/biocontainers/cgcloud-lib |
shpc-registry automated BioContainers addition for cgcloud-lib |
asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier |
|
GITHUB
|
quay.io/biocontainers/cgecore |
shpc-registry automated BioContainers addition for cgecore |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/cgelib |
singularity registry hpc automated addition for cgelib |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/cgmlst-dists |
shpc-registry automated BioContainers addition for cgmlst-dists |
cgmlst-dists |
|
GITHUB
|
quay.io/biocontainers/cgpbigwig |
shpc-registry automated BioContainers addition for cgpbigwig |
asn1Coding, asn1Decoding, asn1Parser, bam2bw, bam2bwbases, bg2bw, bwcat, bwjoin, detectExtremeDepth, p11-kit, p11tool, trust, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv, psktool |
|
GITHUB
|
quay.io/biocontainers/cgranges |
singularity registry hpc automated addition for cgranges |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/cgt |
singularity registry hpc automated addition for cgt |
cgt_bacpop |
|
GITHUB
|
quay.io/biocontainers/cgview |
shpc-registry automated BioContainers addition for cgview |
cgview, cgview_xml_builder.pl, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml, basemlg, chi2, codeml, evolver, infinitesites |
|
GITHUB
|
quay.io/biocontainers/chado-tools |
shpc-registry automated BioContainers addition for chado-tools |
chado, pronto, gffutils-cli, activate-global-python-argcomplete, pybabel, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, faidx, pg_config, 2to3-3.6, idle3.6 |
|
GITHUB
|
quay.io/biocontainers/chainmap |
shpc-registry automated BioContainers addition for chainmap |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/changeo |
shpc-registry automated BioContainers addition for changeo |
AlignRecords.py, AlignSets.py, AssemblePairs.py, AssignGenes.py, BuildConsensus.py, BuildTrees.py, ClusterSets.py, CollapseSeq.py, ConvertDb.py, ConvertHeaders.py, CreateGermlines.py, DefineClones.py, EstimateError.py, FilterSeq.py, MakeDb.py, MaskPrimers.py, PairSeq.py, ParseDb.py, ParseHeaders.py, ParseLog.py, SplitSeq.py, UnifyHeaders.py, airr-tools, filter-table, spdi2prod, vsearch, muscle, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh |
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GITHUB
|
quay.io/biocontainers/chanjo |
shpc-registry automated BioContainers addition for chanjo |
chanjo, varfilter.py, sambamba, easy_install-2.7, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, python2, python2.7, idle, python-config |
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GITHUB
|
quay.io/biocontainers/chap |
shpc-registry automated BioContainers addition for chap |
GMXRC, GMXRC.bash, GMXRC.csh, GMXRC.zsh, GenX_IR, chap, demux.pl, gmx, gmx-completion-gmx.bash, gmx-completion.bash, hwloc-annotate, hwloc-assembler, hwloc-assembler-remote, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distances, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, iga64, llvm-spirv, lstopo, lstopo-no-graphics, ocloc, xplor2gmx.pl, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/check-sort-order |
shpc-registry automated BioContainers addition for check-sort-order |
check-sort-order |
|
GITHUB
|
quay.io/biocontainers/checkatlas |
singularity registry hpc automated addition for checkatlas |
checkatlas, checkatlas-workflow, dul-receive-pack, dul-upload-pack, dulwich, h5fuse.sh, keyring, pkginfo, poetry, pyproject-build, python-build, rocm-smi, virtualenv, h5delete, scanpy, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, doesitcache, aec, pycc, hb-info, numba, natsort, tjbench, jsonschema, dbus-cleanup-sockets |
|
GITHUB
|
quay.io/biocontainers/checkm-genome |
shpc-registry automated BioContainers addition for checkm-genome |
checkm, rppr, guppy, pplacer, dendropy-format, sumlabels.py, sumtrees.py, prodigal, hmmpgmd_shard, easel, esl-mixdchlet |
|
GITHUB
|
quay.io/biocontainers/checkm2 |
singularity registry hpc automated addition for checkm2 |
checkm2, import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, diamond, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, markdown_py, prodigal, protoc |
|
GITHUB
|
quay.io/biocontainers/checkqc |
shpc-registry automated BioContainers addition for checkqc |
checkqc, checkqc-ws, interop_aggregate, interop_dumpbin, interop_dumptext, interop_imaging_table, interop_index-summary, interop_plot_by_cycle, interop_plot_by_lane, interop_plot_flowcell, interop_plot_qscore_heatmap, interop_plot_qscore_histogram, interop_plot_sample_qc, interop_summary, sample-sheet, tabulate, normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/checkv |
shpc-registry automated BioContainers addition for checkv |
checkv, prodigal-gv, diamond, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev |
|
GITHUB
|
quay.io/biocontainers/chembl_structure_pipeline |
shpc-registry automated BioContainers addition for chembl_structure_pipeline |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc, tificc |
|
GITHUB
|
quay.io/biocontainers/chembl_webresource_client |
shpc-registry automated BioContainers addition for chembl_webresource_client |
chembl_act, chembl_ids, chembl_m2t, chembl_sim, chembl_sub, chembl_t2m, chardetect, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/chemfp |
shpc-registry automated BioContainers addition for chemfp |
fpcat, ob2fps, obfitall, obmm, oe2fps, rdkit2fps, sdf2fps, simsearch, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop |
|
GITHUB
|
quay.io/biocontainers/chewbbaca |
shpc-registry automated BioContainers addition for chewbbaca |
chewBBACA.py, chewie, clustalw, CA.pm, cacert.pem, clustalw2, index-themes, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi |
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GITHUB
|
quay.io/biocontainers/chewiesnake |
shpc-registry automated BioContainers addition for chewiesnake |
Clustering_DistanceMatrix.R, alleleprofile_hasher.py, chewBBACA.py, chewie, chewiesnake, chewiesnake_join, create_alleledbSheet.sh, create_sampleSheet.sh, grapetree, hashID.py, lighter, shovill, skesa, stone, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, fastp, flash, megahit, megahit_toolkit, pilon, unidecode |
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GITHUB
|
quay.io/biocontainers/chexalign |
shpc-registry automated BioContainers addition for chexalign |
chexalign, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/chexmix |
shpc-registry automated BioContainers addition for chexmix |
centrimo-plots, chexmix, dtc, fasta-from-bed, fasta-holdout-set, fasta-re-match, index-fasta-file, meme-chip_html_to_tsv, momo, sea, streme, streme_xml_to_html, tgene, xstreme, xstreme_html_to_tsv, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip |
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GITHUB
|
quay.io/biocontainers/chia-rep |
shpc-registry automated BioContainers addition for chia-rep |
f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/chicagotools |
shpc-registry automated BioContainers addition for chicagotools |
bam2chicago.sh, fitDistCurve.R, makeDesignFiles.py, makeNBaitsPerBinFile.py, makeNPerBinFile.py, makePeakMatrix.R, makeProxOEFile.py, runChicago.R, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/chip-r |
singularity registry hpc automated addition for chip-r |
ChIP-R, chipr, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/chips |
shpc-registry automated BioContainers addition for chips |
chips, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/chipseq-greylist |
shpc-registry automated BioContainers addition for chipseq-greylist |
chipseq-greylist, ldc-build-runtime, ldc-profdata, ldc-prune-cache, ldc2, ldmd2, sambamba, f2py3.8, htsfile, bgzip, tabix, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/chira |
shpc-registry automated BioContainers addition for chira |
CopomuS.py, IntaRNA, IntaRNA1, IntaRNA2, IntaRNA3, IntaRNA_CSV_p-value.R, IntaRNA_plotRegions.R, IntaRNAduplex, IntaRNAens, IntaRNAexact, IntaRNAhelix, IntaRNAsTar, IntaRNAseed, blockbuster.x, chira_collapse.py, chira_extract.py, chira_map.py, chira_merge.py, chira_quantify.py, chira_utilities.py, clan_annotate, clan_index, clan_output, clan_search, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold |
|
GITHUB
|
quay.io/biocontainers/chiron |
shpc-registry automated BioContainers addition for chiron |
chiron, unit2, minimap2.py, freeze_graph, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, markdown_py, protoc |
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GITHUB
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quay.io/biocontainers/chisel |
shpc-registry automated BioContainers addition for chisel |
aln2bed.pl, art_454, art_SOLiD, art_illumina, art_profiler_454, art_profiler_illumina, chisel, chisel_bedding, chisel_calling, chisel_cloning, chisel_nonormal, chisel_plotting, chisel_prep, chisel_pseudonormal, chisel_rdr, combinedAvg.pl, empDist.pl, fastqReadAvg.pl, map2bed.pl, summation.pl, gff2gff.py, gawk-5.1.0, awk, gawk, qualfa2fq.pl, xa2multi.pl, bwa, guess-ploidy.py, plot-roh.py, run-roh.pl |
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GITHUB
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quay.io/biocontainers/chiton |
singularity registry hpc automated addition for chiton |
tqdm, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/chopin2 |
singularity registry hpc automated addition for chopin2 |
beeline, beeline.cmd, chopin2, csv-import, docker-image-tool.sh, elasticurl, elasticurl_cpp, elastipubsub, find-spark-home, find-spark-home.cmd, find_spark_home.py, load-spark-env.cmd, load-spark-env.sh, orc-memory, orc-scan, produce_x_platform_fuzz_corpus, pyspark, pyspark.cmd, pyspark2.cmd, run-example, run-example.cmd, run_x_platform_fuzz_corpus, spark-class, spark-class.cmd, spark-class2.cmd, spark-shell, spark-shell.cmd, spark-shell2.cmd, spark-sql, spark-sql.cmd, spark-sql2.cmd, spark-submit, spark-submit.cmd, spark-submit2.cmd, sparkR, sparkR.cmd, sparkR2.cmd, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, numba, pycc, protoc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/chopper |
singularity registry hpc automated addition for chopper |
chopper, clang, clang-15, clang-cl, clang-cpp |
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GITHUB
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quay.io/biocontainers/chorus2 |
shpc-registry automated BioContainers addition for chorus2 |
Chorus2, ChorusDraftPrebuild, ChorusGUI, ChorusHomo, ChorusNGSfilter, ChorusNGSselect, ChorusNoRef, ChorusPBGUI, pyfasta, gff2gff.py, jellyfish, qhelpconverter, bwa, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, qwebengine_convert_dict, plot-vcfstats |
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GITHUB
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quay.io/biocontainers/chromap |
shpc-registry automated BioContainers addition for chromap |
chromap |
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GITHUB
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quay.io/biocontainers/chromatiblock |
shpc-registry automated BioContainers addition for chromatiblock |
C-Sibelia.py, Sibelia, cairosvg, chromatiblock, snpEffAnnotate.py, test_pcre, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, seedtop, run_with_lock, f2py3.8, blast_formatter, blastdb_aliastool |
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GITHUB
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quay.io/biocontainers/chromeister |
shpc-registry automated BioContainers addition for chromeister |
CHROMEISTER, SvtAv1DecApp, SvtAv1EncApp, allVsAll.sh, allVsAll_incremental.sh, aomdec, aomenc, ccmake, cmake, compute_score-nogrid.R, compute_score.R, cpack, ctest, detect_events.py, distro, ed2k-link, edonr256-hash, edonr512-hash, ffmpeg, ffprobe, generate-one-score.sh, gost12-256-hash, gost12-512-hash, h264dec, h264enc, has160-hash, imgcmp, imginfo, index_chromeister.sh, index_chromeister_solo.sh, jasper, jiv, lame, magnet-link, make-cluster.R, make-mean.sh, opencv_annotation, opencv_interactive-calibration, opencv_model_diagnostics, opencv_version, opencv_visualisation, opencv_waldboost_detector, plot.R, plot_diags.R, recompute_scores.sh, rhash, run_and_plot_chromeister.sh, setup_vars_opencv4.sh, sfv-hash, tiger-hash, tth-hash, unfiltered_plot.R, vpxdec, vpxenc, whirlpool-hash, x264, x265, ninja, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv |
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GITHUB
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quay.io/biocontainers/chromhmm |
shpc-registry automated BioContainers addition for chromhmm |
ChromHMM.sh, download_chromhmm_data.sh, funzip, unzipsfx, zipgrep, zipinfo, unzip, jfr, jaotc, aserver, jdeprscan, jhsdb |
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GITHUB
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quay.io/biocontainers/chromimpute |
shpc-registry automated BioContainers addition for chromimpute |
ChromImpute, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/chromograph |
singularity registry hpc automated addition for chromograph |
chromograph, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/chromosight |
shpc-registry automated BioContainers addition for chromosight |
chromosight, cooler, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix |
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GITHUB
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quay.io/biocontainers/chromosomer |
shpc-registry automated BioContainers addition for chromosomer |
bioformats, chromosomer, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, futurize, pasteurize, python2-config, python2.7-config, python2, python2.7 |
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GITHUB
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quay.io/biocontainers/chromsize |
singularity registry hpc automated addition for chromsize |
chromsize, chromsize-benchmark |
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GITHUB
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quay.io/biocontainers/chronumental |
singularity registry hpc automated addition for chronumental |
chronumental, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, protoc, tqdm, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/chunked-scatter |
shpc-registry automated BioContainers addition for chunked-scatter |
chunked-scatter, scatter-regions, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/cialign |
singularity registry hpc automated addition for cialign |
CIAlign, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, gif2rgb, gifbuild, gifclrmp, giffix, giftext, giftool |
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GITHUB
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quay.io/biocontainers/cif2cell |
shpc-registry automated BioContainers addition for cif2cell |
cif2cell, vasp2cif, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/cigar |
shpc-registry automated BioContainers addition for cigar |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/circexplorer |
shpc-registry automated BioContainers addition for circexplorer |
|
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GITHUB
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quay.io/biocontainers/circexplorer2 |
shpc-registry automated BioContainers addition for circexplorer2 |
CIRCexplorer2, bam2fastx, bam_merge, bed_to_juncs, contig_to_chr_coords, cuffcompare, cuffdiff, cufflinks, cuffmerge, cuffnorm, cuffquant, fast_circ.py, fetch_ucsc.py, fix_map_ordering, genePredToGtf, gffread, gtfToGenePred, gtf_juncs, gtf_to_fasta, gtf_to_sam, juncs_db, long_spanning_reads, map2gtf, prep_reads, sam_juncs, samtools_0.1.18, segment_juncs, sra_to_solid, tophat, tophat-fusion-post, tophat2, tophat_reports, bedGraphToBigWig, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect |
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GITHUB
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quay.io/biocontainers/circlator |
shpc-registry automated BioContainers addition for circlator |
AMOScmp, AMOScmp-shortReads, AMOScmp-shortReads-alignmentTrimmed, Bundler, Chainer, FRCurve, FilterEdgesByCluster, Joiner, Linearize, MarkRepeats, Minimo, OrientContigs, OutputMotifs, OutputResults, OutputScaffolds, QtWebPluginProcess, QtWebProcess, RankMotifs, ace2contig, agp2amos, alignGFA, amos2ace, amos2frg, amos2mates, amos2sq, amosvalidate, analyze-read-depth, analyzeSNPs, arachne2ctg, arachne2scaff, arrive, arrive2, asmQC, asmQC2, assembleRNAs, astats, bank-clean, bank-combine, bank-mapping, bank-report, bank-transact, bank-tutorial, bank-unlock, bank2contig, bank2coverage, bank2fasta, bank2lib, bank2sam, bank2scaff, benchmark2arachne, benchmark2ca, benchmark2mates, benchmark2ta, benchmark_qual, benchmark_seq, blasr2coords, blat2nucmer, bogart, bogus, ca2ctg, ca2mates, ca2scaff, ca2singletons, ca2ta, canu, casm-breaks, casm-layout, castats, cavalidate, cestat-cov, cgb2ctg, circlator, clk, clusterSnps, contig-cmp, contig2contig, contig_break_finder, contig_cleaner, contig_overlap_trimmer, coords2cam, correctOverlaps, count-kmers, count-qmers, ctg2fasta, ctg2umdcontig, ctgovl, cvgChop, cvgStat, dbus-daemon-launch-helper, delta2clr, delta2cvg, dumpBlob, dumpContigsAsReads, dumpFeatures, dumpmates, dumpreads, edalign, errorEstimate, excl_seqs, extractContig, extractScaffold, falconsense, fasta_select_len, fasta_to_fastq, fastq64_to_fastq33, fastqAnalyze, fastqSample, fastqSimulate, fastqSimulate-sort, fastq_filter, fastq_rename, fastq_to_fasta_fast, fastqqc, filterCorrectionLayouts, filterCorrectionOverlaps, filter_contig, filter_seq, filterfrg, find-duplicate-reads, find-query-breaks, find-tandem, findChimeras, findErrors, findErrors-Dump, findMissingMates, findTcovSnp, find_ends, fixfastq, fixfrg, fixlib, frg-umd-merge, frg2fasta, frg2fastq, frg2ta, gap-links, gc-content-plot, gccontent, gene_asm, generateCorrectionLayouts, genome-complexity, genome-complexity-fast, getFRCvalues, getN50, getlengths, gnuplot_qt, goBambus2, grow-readbank, gst-completion-helper, gst-plugin-scanner, gst-ptp-helper, hash-overlap, insert-sizes, iterate, kmer-count, kmer-cov, kmer-cov-plot, kmers, ktrimfrg, library-histogram, list-linked-contigs, listGCContent, listReadPlacedStatus, listSingletonMates, listSurrogates, listcontigreads, load-overlaps, loadCorrectedReads, loadErates, loadFeatures, loadTrimmedReads, make-consensus, make-consensus_poly, merge-contigs, message-count, message-extract, message-validate, mhapConvert, minimus, minimus2, minimus2-blat, missing-reads, mmapConvert, normalizeScaffold, nucmer2ovl, nucmerAnnotate, olapsFromContig, ovStoreBucketizer, ovStoreBuild, ovStoreConfig, ovStoreDump, ovStoreIndexer, ovStoreSorter, ovStoreStats, overlap-align, overlapConvert, overlapImport, overlapInCore, overlapInCorePartition, overlapPair, ovl-degr-dist, ovl2OVL, pacbio_post_process, parsecasm, partitionBank, phd2afg, postCAqc, preTA, preassembleFrgs, prefixEditDistance-matchLimitGenerate, printScaff, pullTArchive, pyrosim, qmer-filter, read-cov-plot, readConsensus, readinfo2cam, rearrangeSeqs, recallConsensus, renameReads, rerunMultiTest, resetFragLibrary, revFasta, revScaffold, runAmos, runMultiTest, runTA, runTest, running-cmp, samPileupConsensus, samtoafg, scaff2fasta, scaffoldRange2Ungapped, select-reads, sequence, show-ma-asm, shuffleBank, sidebyside, sim-cover-depth, sim-cover2, sim-shotgun, simple-overlap, simpleContigLoader, simplifyLibraries, singles, sort2, splitHaplotype, splitReads, sqStoreCreate, sqStoreCreatePartition, sqStoreDumpFASTQ, sqStoreDumpMetaData, stats, summarizeMultiTest, suspiciousfeat2region, ta2ace, tab2ovls, tagsum-reduce, tandemCollapse, tarchive2amos, tarchive2ca, tgStoreCompress, tgStoreCoverageStat, tgStoreDump, tgStoreFilter, tgStoreLoad, tgTigDisplay, tigger, tiling2cam, toAmos, toAmos_new, toArachne, trace_comment, trace_comments, trace_convert, trace_scf_dump, trace_seq, translate-fasta, trimByOvl, trimReads, trimends, trimfrg, untangle, updateBankPositions, updateClrRanges, updateDeltaClr, updateLibSizes, utgcns, vecfix, verify-layout, wtdbgConvert, meryl, fastaq, gnuplot, giffilter, gifsponge, spades-bwa, spades-core, spades-corrector-core, spades-gbuilder, spades-gmapper |
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GITHUB
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quay.io/biocontainers/circle-map-cpp |
singularity registry hpc automated addition for circle-map-cpp |
circle_map++, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap, groupBy, intersectBed, linksBed, mapBed, maskFastaFromBed, mergeBed, multiBamCov |
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GITHUB
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quay.io/biocontainers/circle-map |
shpc-registry automated BioContainers addition for circle-map |
Circle-Map, numba, pycc, tqdm, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv |
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GITHUB
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quay.io/biocontainers/circminer |
shpc-registry automated BioContainers addition for circminer |
circminer, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
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GITHUB
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quay.io/biocontainers/circos-tools |
shpc-registry automated BioContainers addition for circos-tools |
binlinks, bundlelinks, calcdatarange, clustal2link, colorinterpolate, convertlinks, filterlinks, make-conf, make-table, orderchr, parse-category, parse-table, randomdata, randomlinks, resample, config_data, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml, basemlg, chi2, codeml, evolver |
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GITHUB
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quay.io/biocontainers/circos |
shpc-registry automated BioContainers addition for circos |
|
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GITHUB
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quay.io/biocontainers/circrna_finder |
singularity registry hpc automated addition for circrna_finder |
filterCirc.awk, filterSpliceSiteCircles.pl, nrForwardSplicedReads.pl, postProcessStarAlignment.pl, runStar.pl, starCirclesToBed.pl, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd, df, dir, dircolors, dirname, du, echo, env |
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GITHUB
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quay.io/biocontainers/circtools |
singularity registry hpc automated addition for circtools |
DCC, FUCHS, circtools, circtools_circtest_wrapper.R, circtools_detect_write_skip_tracks.pl, circtools_enrich_visualization.R, circtools_exon_wrapper.R, circtools_generate_flanking_introns.py, circtools_generate_intron_gtf.sh, circtools_merge_enrich_results.sh, circtools_primex_formatter.R, circtools_primex_wrapper.R, circtools_quickcheck_wrapper.R, circtools_reconstruct_visualization.R, circtools_sirna_formatter.R, create_igv_script.py, create_igv_script_from_gene_names.py, create_igv_script_from_position_list.py, detect_new_exons_from_fuchs_data.py, get_introns_from_ensembl.pl, guided_denovo_circle_structure_parallel, htseq-count-barcodes, make_coverage_picture.R, summarized_coverage_profiles.R, htseq-count, htseq-qa, fonttools, pyftmerge, pyftsubset, ttx, brotli, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap |
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GITHUB
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quay.io/biocontainers/circularmapper |
shpc-registry automated BioContainers addition for circularmapper |
circulargenerator, realignsamfile, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/circulocov |
singularity registry hpc automated addition for circulocov |
circulocov, sdust, k8, paftools.js, minimap2, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/ciri-full |
singularity registry hpc automated addition for ciri-full |
CIRI, CIRI-AS, CIRI-AS.pl, CIRI-full, CIRI-full.jar, CIRI.pl, jwebserver, jpackage, qualfa2fq.pl, xa2multi.pl, bwa, cups-config, ippeveprinter, ipptool, hb-info, jfr, tjbench, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java, javac, javadoc, javap |
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GITHUB
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quay.io/biocontainers/ciriquant |
singularity registry hpc automated addition for ciriquant |
CIRI_DE, CIRI_DE_replicate, CIRIquant, compare_HLA.py, compare_HLA_Omixon.py, extract_Omixon_HLA.py, extract_exons.py, extract_splice_sites.py, hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, hisatgenotype.py, hisatgenotype_HLA_genotyping_PGs.py, hisatgenotype_build_genome.py, hisatgenotype_convert_codis.py, hisatgenotype_extract_codis_data.py, hisatgenotype_extract_cyp_data.py, hisatgenotype_extract_reads.py, hisatgenotype_extract_vars.py, hisatgenotype_hla_cyp.py, hisatgenotype_locus.py, hisatgenotype_locus_samples.py, prepDE.py, prep_CIRIquant, run_extract_CP.sh, run_extract_ILMN.sh, run_genotype_build.sh, run_hisat2_build.sh, run_type_CP.sh, stringtie, qualfa2fq.pl, xa2multi.pl, bwa, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl |
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GITHUB
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quay.io/biocontainers/cirtap |
shpc-registry automated BioContainers addition for cirtap |
cirtap, ete3, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util |
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GITHUB
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quay.io/biocontainers/ciso8601 |
shpc-registry automated BioContainers addition for ciso8601 |
2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5, wish8.5 |
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GITHUB
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quay.io/biocontainers/cistrome-ceas |
shpc-registry automated BioContainers addition for cistrome-ceas |
ChIPAssoc, build_genomeBG, ceas, ceasBW, gca, sitepro, siteproBW, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
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GITHUB
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quay.io/biocontainers/cistrome_beta |
shpc-registry automated BioContainers addition for cistrome_beta |
BETA, misp, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/cite-seq-count |
shpc-registry automated BioContainers addition for cite-seq-count |
CITE-seq-Count, umi_tools, get_objgraph, undill, xkbcli, py.test, pytest, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil |
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GITHUB
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quay.io/biocontainers/cityhash |
shpc-registry automated BioContainers addition for cityhash |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
|
quay.io/biocontainers/civicpy |
singularity registry hpc automated addition for civicpy |
civicpy, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/cladebreaker |
singularity registry hpc automated addition for cladebreaker |
check_samplesheet.py, cladebreaker, list_fixer.py, nextflow, nextflow.bak, conda-env, cph, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd, df, dir, dircolors, dirname, du |
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GITHUB
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quay.io/biocontainers/cladeomatic |
singularity registry hpc automated addition for cladeomatic |
cladeomatic, corepack, gpustat, npx, py-spy, ray, virtualenv, node, npm, snp-sites, mpg123, mpg123-id3dump, mpg123-strip, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, libgcrypt-config, mpicalc, yat2m, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, attr, balsam, getfattr, lprodump |
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GITHUB
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quay.io/biocontainers/clair |
shpc-registry automated BioContainers addition for clair |
|
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GITHUB
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quay.io/biocontainers/clair3-illumina |
singularity registry hpc automated addition for clair3-illumina |
clair3.py, pypy, pypy3, pypy3.6, run_clair3.sh, whatshap, gdbm_dump, gdbm_load, gdbmtool, estimator_ckpt_converter, google-oauthlib-tool, igzip, tf_upgrade_v2, pbunzip2, pbzcat, pbzip2, tflite_convert, saved_model_cli, toco, toco_from_protos, pt2to3, ptdump, ptrepack, pttree, tensorboard, pigz, unpigz, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh |
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GITHUB
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quay.io/biocontainers/clair3-trio |
singularity registry hpc automated addition for clair3-trio |
clair3.py, pypy, pypy3, pypy3.6, run_clair3_trio.sh, whatshap, gdbm_dump, gdbm_load, gdbmtool, estimator_ckpt_converter, google-oauthlib-tool, igzip, tf_upgrade_v2, pbunzip2, pbzcat, pbzip2, tflite_convert, saved_model_cli, toco, toco_from_protos, vcf_sample_filter.py, pt2to3, ptdump, ptrepack, pttree, tensorboard, vcf_filter.py, vcf_melt, pigz, unpigz, env_parallel |
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GITHUB
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quay.io/biocontainers/clair3 |
shpc-registry automated BioContainers addition for clair3 |
clair3.py, pypy, pypy3, pypy3.6, run_clair3.sh, whatshap, gdbm_dump, gdbm_load, gdbmtool, estimator_ckpt_converter, google-oauthlib-tool, igzip, tf_upgrade_v2, pbunzip2, pbzcat, pbzip2 |
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GITHUB
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quay.io/biocontainers/clairvoyante |
shpc-registry automated BioContainers addition for clairvoyante |
clairvoyante.py, pypy, virtualenv-pypy, freeze_graph, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, markdown_py, protoc, f2py2, f2py2.7 |
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GITHUB
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quay.io/biocontainers/clame |
shpc-registry automated BioContainers addition for clame |
binning, clame, genFm9, mapping |
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GITHUB
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quay.io/biocontainers/clan |
shpc-registry automated BioContainers addition for clan |
clan_annotate, clan_index, clan_output, clan_search |
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GITHUB
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quay.io/biocontainers/clark |
shpc-registry automated BioContainers addition for clark |
CLARK, CLARK-S, CLARK-l, converter, dscriptMaker, exeSeq, extractSeqs, getAbundance, getAccssnTaxID, getConfidenceDensity, getGammaDensity, getTargetSpecificKmersStat, getTargetsDef, getfilesToTaxNodes, makeSummaryTables, tar |
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GITHUB
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quay.io/biocontainers/classpro |
singularity registry hpc automated addition for classpro |
ClassGS, ClassPro, class2acc, class2cns, prof2class |
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GITHUB
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quay.io/biocontainers/clearcnv |
shpc-registry automated BioContainers addition for clearcnv |
clearCNV, dash-generate-components, renderer, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical, bam2bed_sge, bam2bed_sge-float128 |
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GITHUB
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quay.io/biocontainers/clearcut |
shpc-registry automated BioContainers addition for clearcut |
clearcut |
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GITHUB
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quay.io/biocontainers/clermontyping |
singularity registry hpc automated addition for clermontyping |
clermonTyping.sh, numpy-config, pandoc-lua, pandoc-server, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, seedtop, test_pcre, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, run_with_lock, pandoc, blast_formatter, blastdb_aliastool, blastdbcheck, blastdbcmd, blastn |
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GITHUB
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quay.io/biocontainers/clever-toolkit |
shpc-registry automated BioContainers addition for clever-toolkit |
add-score-tags-to-bam, bam-to-alignment-priors, bam2fastq, clever, clever-core, ctk-version, evaluate-sv-predictions, extract-bad-reads, filter-bam, filter-variations, genotyper, insert-length-histogram, laser, laser-core, laser-recalibrate, mateclever, mateclever-compute-rois, merge-putative-variations, merge-to-vcf, multiline-to-xa, plot-insert-size-distribution, postprocess-predictions, precompute-distributions, read-group-stats, remove-redundant-variations, split-priors-by-chromosome, split-reads, vcf-to-deletionlist, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, qhelpconverter, guess-ploidy.py |
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GITHUB
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quay.io/biocontainers/clinker-py |
shpc-registry automated BioContainers addition for clinker-py |
clinker, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, faidx, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10 |
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GITHUB
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quay.io/biocontainers/clinker |
shpc-registry automated BioContainers addition for clinker |
|
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GITHUB
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quay.io/biocontainers/clinod |
shpc-registry automated BioContainers addition for clinod |
analyze, batchman, bison, clinod, convert2snns, feedback-gennet, ff_bignet, flex, flex++, isnns, linknets, m4, mkhead, mkout, mkpat, netlearn, netperf, pat_sel, pat_sel_simple, snns, snns2c, snnsbat, td_bignet, xgui, yacc, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/clinvar-this |
singularity registry hpc automated addition for clinvar-this |
clinvar-this, tabulate, jsonschema, normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/clinvar-tsv |
shpc-registry automated BioContainers addition for clinvar-tsv |
clinvar_tsv, plac_runner.py, yte, docutils, pulptest, cbc, clp, snakemake, snakemake-bash-completion, tabulate, jupyter-trust |
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GITHUB
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quay.io/biocontainers/clipandmerge |
shpc-registry automated BioContainers addition for clipandmerge |
ClipAndMerge, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/clipcontext |
shpc-registry automated BioContainers addition for clipcontext |
clipcontext, twoBitToFa, twoBitInfo, markdown_py, my_print_defaults, mysql_config, perror, shiftBed, annotateBed, bamToBed, bamToFastq |
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GITHUB
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quay.io/biocontainers/clipkit |
shpc-registry automated BioContainers addition for clipkit |
clipkit, tqdm, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/clippy |
shpc-registry automated BioContainers addition for clippy |
clippy, dash-generate-components, renderer, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, flask, pybabel, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py |
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GITHUB
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quay.io/biocontainers/cliquesnv |
shpc-registry automated BioContainers addition for cliquesnv |
cliquesnv, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, 2to3-3.10 |
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GITHUB
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quay.io/biocontainers/cloci |
singularity registry hpc automated addition for cloci |
acc2fa, acc2gbk, acc2gff, acc2locus, add2gff, annotationStats, assemblyStats, bioreform, bsmp2info, cloci, cloci2enrich, cloci2stats, coords2fa, crap, db2files, db2hgs, db2microsyntree, db2search, extract_mtdb, fa2clus, fa2hmmer2fa, fa2mass, fa2tree, fna2faa, fsa2xml, gbf2info, gff2seq, gff2svg, gtk-builder-tool, gtk-encode-symbolic-svg, gtk-launch, gtk-query-immodules-3.0, gtk-query-settings, hg2hg_net, hlg2biofile, hlg2hlg_net, jgiDwnld, just-top-hits, manage_mtdb, mtdb, ncbiAcc2fa, ncbiDwnld, ome2name, predb2mtdb, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, s2subs, systematic-mutations, update_mtdb, wayland-scanner, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, iqtree2, aria2c, gawk-5.3.0, gawkbug, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank |
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GITHUB
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quay.io/biocontainers/clonalframeml |
shpc-registry automated BioContainers addition for clonalframeml |
ClonalFrameML |
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GITHUB
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quay.io/biocontainers/cloudspades |
singularity registry hpc automated addition for cloudspades |
idle3.13, pydoc3.13, python3.13, python3.13-config, coronaspades.py, metaplasmidspades.py, metaviralspades.py, rnaviralspades.py, spades-convert-bin-to-fasta, spades-gsimplifier, spades-kmer-estimating, spades-read-filter, spades-bwa, spades-core, spades-corrector-core, spades-gbuilder, spades-gmapper, spades-hammer, spades-ionhammer, spades-kmercount, metaspades.py, plasmidspades.py, rnaspades.py, spades.py, spades_init.py |
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GITHUB
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quay.io/biocontainers/clove |
shpc-registry automated BioContainers addition for clove |
clove, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/clsify |
shpc-registry automated BioContainers addition for clsify |
abi-dump.2.10.0, align-info.2.10.0, alignmentSieve, bam-load.2.10.0, bamCompare, bamCoverage, bamPEFragmentSize, bigWigToBedGraph, bigwigCompare, bioawk, bioconvert, bioconvert_init, bioconvert_sniffer, bioconvert_stats, cache-mgr.2.10.0, cg-load.2.10.0, clsify, computeGCBias, computeMatrix, computeMatrixOperations, correctGCBias, dash-generate-components, deeptools, dsrc, estimateReadFiltering, estimateScaleFactor, fasterq-dump-orig.2.10.0, fasterq-dump.2.10.0, fastq-dump-orig.2.10.0, fastq-dump.2.10.0, go, gofmt, illumina-dump.2.10.0, kar.2.10.0, kdbmeta.2.10.0, kget.2.10.0, latf-load.2.10.0, ldc-build-runtime, ldc-profdata, ldc-prune-cache, ldc2, ldmd2, mawk, multiBamSummary, multiBigwigSummary, plink, plotCorrelation, plotCoverage, plotEnrichment, plotFingerprint, plotHeatmap, plotPCA, plotProfile, prefetch-orig.2.10.0, prefetch.2.10.0, rcexplain.2.10.0, renderer, sam-dump-orig.2.10.0, sam-dump.2.10.0, sff-dump.2.10.0, squizz, sra-pileup-orig.2.10.0, sra-pileup.2.10.0, sra-sort.2.10.0, sra-stat.2.10.0, srapath-orig.2.10.0, srapath.2.10.0, sratools.2.10.0, test-sra.2.10.0, vdb-config.2.10.0, vdb-copy.2.10.0, vdb-decrypt.2.10.0, vdb-dump.2.10.0, vdb-encrypt.2.10.0, vdb-lock.2.10.0, vdb-passwd.2.10.0, vdb-unlock.2.10.0, vdb-validate.2.10.0, wiggletools, easydev_buildPackage, ibrowse, multigit, sambamba, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128 |
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GITHUB
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quay.io/biocontainers/clust |
shpc-registry automated BioContainers addition for clust |
clust, conv-template, from-template, qhelpconverter, pylupdate5, pyrcc5, pyuic5, sip, qdoc, gst-device-monitor-1.0, gst-discoverer-1.0 |
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GITHUB
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quay.io/biocontainers/clustalo |
shpc-registry automated BioContainers addition for clustalo |
clustalo |
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GITHUB
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quay.io/biocontainers/clustalw |
shpc-registry automated BioContainers addition for clustalw |
clustalw, clustalw2 |
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GITHUB
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quay.io/biocontainers/cluster-picker |
shpc-registry automated BioContainers addition for cluster-picker |
cluster-picker, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/cluster_vcf_records |
shpc-registry automated BioContainers addition for cluster_vcf_records |
vt, tabix++, bc, dc, fastaq, abba-baba, bFst, bed2region, bgziptabix, dumpContigsFromHeader |
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GITHUB
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quay.io/biocontainers/clusterfunk |
singularity registry hpc automated addition for clusterfunk |
clusterfunk, dendropy-format, sumlabels.py, sumtrees.py, chardetect, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/clustergrammer |
shpc-registry automated BioContainers addition for clustergrammer |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/clusterone |
shpc-registry automated BioContainers addition for clusterone |
clusterone, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/clusterpicker |
shpc-registry automated BioContainers addition for clusterpicker |
ClusterPicker, cluster-picker, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/clusty |
singularity registry hpc automated addition for clusty |
clusty |
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GITHUB
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quay.io/biocontainers/cmaple |
singularity registry hpc automated addition for cmaple |
cmaple, cmaple-aa |
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GITHUB
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quay.io/biocontainers/cmappy |
shpc-registry automated BioContainers addition for cmappy |
concat, gct2gctx, gctx2gct, subset, f2py3.6, normalizer, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
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quay.io/biocontainers/cmash |
shpc-registry automated BioContainers addition for cmash |
MakeDNADatabase.py, MakeNodeGraph.py, MakeStreamingDNADatabase.py, MakeStreamingPrefilter.py, QueryDNADatabase.py, StreamingQueryDNADatabase.py, StreamingQueryDNADatabase_queue.py, abundance-dist-single.py, abundance-dist.py, annotate-partitions.py, count-median.py, do-partition.py, extract-long-sequences.py, extract-paired-reads.py, extract-partitions.py, fastq-to-fasta.py, filter-abund-single.py, filter-abund.py, filter-stoptags.py, find-knots.py, interleave-reads.py, load-graph.py, load-into-counting.py, make-initial-stoptags.py, merge-partitions.py, normalize-by-median.py, partition-graph.py, readstats.py, sample-reads-randomly.py, split-paired-reads.py, trim-low-abund.py, unique-kmers.py, screed, f2py3.8, opj_compress, opj_decompress, opj_dump, h5clear, h5format_convert, h5watch, h5fc, gif2h5 |
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GITHUB
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quay.io/biocontainers/cmat |
singularity registry hpc automated addition for cmat |
VERSION, cmat, coveralls, jwebserver, nextflow.bak, nextflow, coverage, pcre2posix_test, basenc, b2sum, ls, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd, df |
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GITHUB
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quay.io/biocontainers/cmfinder |
shpc-registry automated BioContainers addition for cmfinder |
COPYRIGHT, RNAPhylo, ScoreMotif.pl, Stockholm.pm, _cmfinder.pl, align, canda, candf, cands, cmfinder, cmfinder.pl, cmfinder04, cmfinder04.pl, comb_motif.pl, compare_motif.pl, count_seq, diff_motif, fasta2col, filter.pl, findphyl, hmmpair, io.pl, merge_motif.pl, mltree, perl5.22.2, rank_cmfinder.pl, rm_dup.pl, select_cmfinder.pl, sreformat, summarize, summary_rank.pl, test_pcre, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, clustalw, c2ph, pstruct, seedtop, cluster |
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GITHUB
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quay.io/biocontainers/cmip |
shpc-registry automated BioContainers addition for cmip |
avgEpsGrid, canal, cmip, getPatch, grd2cube, surfnet2binaryGrid, titration, watden |
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GITHUB
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quay.io/biocontainers/cmph |
shpc-registry automated BioContainers addition for cmph |
cmph |
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GITHUB
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quay.io/biocontainers/cmsearch_tblout_deoverlap |
singularity registry hpc automated addition for cmsearch_tblout_deoverlap |
cmsearch-deoverlap.pl |
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GITHUB
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quay.io/biocontainers/cmseq |
shpc-registry automated BioContainers addition for cmseq |
breadth_depth.py, consensus.py, consensus_aDNA.py, poly.py, polymut.py, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
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GITHUB
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quay.io/biocontainers/cmsip |
shpc-registry automated BioContainers addition for cmsip |
LiBis, bamsort.sh, bbf, bseqc2, bseqc2mbiasplot.R, bsmap, cmsip, fetchChromSizes, mcall, mcomp, moabs, numCI, pefilter, preprocess_novoalign.sh, redepth.pl, routines.pm, template_for_cfg, template_for_qsub, trim_galore, cutadapt, fastqc, gawk-5.1.0, awk, gawk, pigz, unpigz, my_print_defaults, mysql_config, perror |
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GITHUB
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quay.io/biocontainers/cmv |
shpc-registry automated BioContainers addition for cmv |
CMCV, CMCWStoCMCV, CMCtoHMMC, CMV, CMVJson, HMMCV, HMMCtoCMC, HMMV |
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GITHUB
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quay.io/biocontainers/cnasim |
singularity registry hpc automated addition for cnasim |
cnasim, demes, dwgsim, dwgsim_eval, msp, mspms, tskit, annot-tsv, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, jsonschema, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl |
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GITHUB
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quay.io/biocontainers/cnmf |
singularity registry hpc automated addition for cnmf |
cnmf, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, h5tools_test_utils, scanpy, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, h5delete, numba |
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GITHUB
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quay.io/biocontainers/cnv-phenopacket |
singularity registry hpc automated addition for cnv-phenopacket |
cnv-phenopacket, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, jsonschema |
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GITHUB
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quay.io/biocontainers/cnv-vcf2json |
singularity registry hpc automated addition for cnv-vcf2json |
cnv-vcf2json, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, jsonschema |
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GITHUB
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quay.io/biocontainers/cnv_facets |
shpc-registry automated BioContainers addition for cnv_facets |
cnv_facets.R, snp-pileup, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, wget, ace2sam, blast2sam.pl |
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GITHUB
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quay.io/biocontainers/cnvetti |
shpc-registry automated BioContainers addition for cnvetti |
cnvetti |
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GITHUB
|
quay.io/biocontainers/cnvkit |
shpc-registry automated BioContainers addition for cnvkit |
cnv_annotate.py, cnv_expression_correlate.py, cnv_updater.py, cnv_ztest.py, cnvkit.py, guess_baits.py, reference2targets.py, skg_convert.py, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, faidx, 2to3-3.5, idle3.5, pydoc3.5, python3.5 |
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GITHUB
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quay.io/biocontainers/cnvnator |
shpc-registry automated BioContainers addition for cnvnator |
afterimage-config, afterimage-libs, cconfig, cmsd, cnvnator, cnvnator2VCF.pl, davix-cp, davix-get, davix-http, davix-ls, davix-mkdir, davix-mv, davix-put, davix-rm, davix-tester, davix-unit-tests, frm_admin, frm_purged, frm_xfragent, frm_xfrd, genreflex, glewinfo, hadd, hist2workspace, mpxstats, plotbaf.py, plotcircular.py, plotrdbaf.py, prepareHistFactory, proofserv, proofserv.exe, pythia8-config, rmkdepend, root, root-config, root.exe, rootbrowse, rootcint, rootcling, rootcp, rootdrawtree, rooteventselector, rootls, rootmkdir, rootmv, rootn.exe, rootnb.exe, rootprint, rootrm, roots, roots.exe, rootslimtree, scitokens-create, scitokens-list-access, scitokens-test, scitokens-test-access, scitokens-verify, setxrd.csh, setxrd.sh, soapcpp2, thisroot.csh, thisroot.fish, thisroot.sh, visualinfo, wait41, wsdl2h, xpdtest, xrdacctest, xrdadler32, xrdcopy, xrdcp, xrdcrc32c, xrdfs, xrdgsiproxy, xrdgsitest, xrdmapc, xrdpfc_print, xrdpinls, xrdpwdadmin, xrdsssadmin, xrootd, xrootd-config, xxh128sum, xxh32sum, xxh64sum, xxhsum, fitscopy, fpack, funpack, imcopy, smem, cxpm |
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GITHUB
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quay.io/biocontainers/cnvpytor |
shpc-registry automated BioContainers addition for cnvpytor |
cnvpytor, vba_extract.py, mirror_server, mirror_server_stop, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, img2webp |
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GITHUB
|
quay.io/biocontainers/coast |
shpc-registry automated BioContainers addition for coast |
coast, bokeh, tabulate, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns |
|
GITHUB
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quay.io/biocontainers/coatran |
shpc-registry automated BioContainers addition for coatran |
coatran_constant, coatran_expgrowth, coatran_inftime, coatran_transtree |
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GITHUB
|
quay.io/biocontainers/cobra-meta |
singularity registry hpc automated addition for cobra-meta |
cobra-meta, blastn_vdb, tblastn_vdb, uuid, uuid-config, test_pcre, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl, sort-table |
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GITHUB
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quay.io/biocontainers/cobra |
shpc-registry automated BioContainers addition for cobra |
glpsol, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, xslt-config |
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GITHUB
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quay.io/biocontainers/cobs |
shpc-registry automated BioContainers addition for cobs |
cobs, xxhsum |
|
GITHUB
|
quay.io/biocontainers/coconet-binning |
shpc-registry automated BioContainers addition for coconet-binning |
coconet, pybind11-config, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, igraph, doesitcache, iptest3, iptest, ipython3, ipython, cygdb |
|
GITHUB
|
quay.io/biocontainers/cocoscore |
shpc-registry automated BioContainers addition for cocoscore |
fasttext, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier |
|
GITHUB
|
quay.io/biocontainers/codan |
shpc-registry automated BioContainers addition for codan |
codan.py, fasta_to_tops, predict, tops-viterbi_decoding, bp_pairwise_kaks.pl, bp_search2BSML.pl, CA.pm, cacert.pem, index-themes, bp_aacomp.pl, bp_biofetch_genbank_proxy.pl, bp_bioflat_index.pl, bp_biogetseq.pl, bp_blast2tree.pl |
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GITHUB
|
quay.io/biocontainers/codingorf |
shpc-registry automated BioContainers addition for codingorf |
codingorf, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/codingquarry |
shpc-registry automated BioContainers addition for codingquarry |
CodingQuarry, CufflinksGTF_to_CodingQuarryGFF3.py, run_CQ-PM_mine.sh, run_CQ-PM_stranded.sh, run_CQ-PM_unstranded.sh, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/codoff |
singularity registry hpc automated addition for codoff |
codoff, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/codonw |
shpc-registry automated BioContainers addition for codonw |
aau, base3s, bases, cbi, codonw, cu, cutab, cutot, dinuc, enc, fop, gc3s, raau, reader, rscu, tidy, transl, cai, gc |
|
GITHUB
|
quay.io/biocontainers/cofold |
shpc-registry automated BioContainers addition for cofold |
CoFold, RNAcofold, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex, RNAsnoop, Kinfold, RNALfold, RNAaliduplex, RNAalifold |
|
GITHUB
|
quay.io/biocontainers/cogclassifier |
singularity registry hpc automated addition for cogclassifier |
COGclassifier, plot_cog_classifier_barchart, plot_cog_classifier_piechart, jsonschema, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/cogent |
shpc-registry automated BioContainers addition for cogent |
mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, mpifort, mpic++, mpicc |
|
GITHUB
|
quay.io/biocontainers/cogent3 |
singularity registry hpc automated addition for cogent3 |
numba, pycc, tqdm, chardetect, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/cogtriangles |
singularity registry hpc automated addition for cogtriangles |
COGcognitor, COGlse, COGmakehash, COGreadblast, COGtriangles |
|
GITHUB
|
quay.io/biocontainers/coidb |
singularity registry hpc automated addition for coidb |
cluster_bold.py, coidb, f2py3.11, format_sintax.py, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, stone, seqkit, plac_runner.py, yte, funzip, unzipsfx, zipgrep, zipinfo, docutils, vsearch, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, unzip, cmark, pulptest |
|
GITHUB
|
quay.io/biocontainers/coils |
shpc-registry automated BioContainers addition for coils |
coils-svr.pl, coils-wrap.pl, ncoils |
|
GITHUB
|
quay.io/biocontainers/coinfinder |
shpc-registry automated BioContainers addition for coinfinder |
coinfinder, ffmpeg, ffprobe, h264dec, h264enc, lame, vpxdec, vpxenc, x264, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv, psktool |
|
GITHUB
|
quay.io/biocontainers/cojac |
shpc-registry automated BioContainers addition for cojac |
cooc-colourmut, cooc-curate, cooc-mutbamscan, cooc-pubmut, cooc-tabmut, phe2cojac, normalizer, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/colabfold |
singularity registry hpc automated addition for colabfold |
a3m_database_extract, a3m_database_filter, a3m_database_reduce, a3m_extract, a3m_reduce, colabfold_batch, colabfold_search, colabfold_split_msas, cstranslate, ffindex_apply, ffindex_build, ffindex_from_fasta, ffindex_from_fasta_with_split, ffindex_get, ffindex_modify, ffindex_order, ffindex_reduce, ffindex_unpack, flatc, gawk-5.2.2, gawkbug, hhalign, hhalign_omp, hhblits, hhblits_ca3m, hhblits_omp, hhconsensus, hhfilter, hhmake, hhsearch, hhsearch_omp, jlpm, jsonpointer, jupyter-events, jupyter-lab, jupyter-labextension, jupyter-labhub, jupyter-server, kalign, pdbfixer, pyjson5, qtpy, wsdump, jupyter-console, jupyter-qtconsole, aria2c, h5fuse.sh, jupyter-execute, jupyter-dejavu, send2trash, import_pb_to_tensorboard, mmseqs, jupyter-notebook, jupyter-nbconvert, pybabel, estimator_ckpt_converter, h5delete, jupyter-kernel, jupyter-kernelspec, jupyter-run, google-oauthlib-tool, tf_upgrade_v2, curve_keygen, tflite_convert, saved_model_cli, toco, toco_from_protos, awk |
|
GITHUB
|
quay.io/biocontainers/collect-columns |
shpc-registry automated BioContainers addition for collect-columns |
collect-columns, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, faidx, 2to3-3.8, idle3.8, pydoc3.8, python3.8 |
|
GITHUB
|
quay.io/biocontainers/collect_mgf |
shpc-registry automated BioContainers addition for collect_mgf |
collect_mgf |
|
GITHUB
|
quay.io/biocontainers/collectl |
shpc-registry automated BioContainers addition for collectl |
collectl, colmux, perl5.22.0, c2ph, pstruct, podselect |
|
GITHUB
|
quay.io/biocontainers/colombo |
shpc-registry automated BioContainers addition for colombo |
Colombo, SigiCRF, SigiHMM, mSigiHMM, jaotc, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs, pack200, rmic |
|
GITHUB
|
quay.io/biocontainers/colorbrewer |
shpc-registry automated BioContainers addition for colorbrewer |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/colord |
shpc-registry automated BioContainers addition for colord |
colord |
|
GITHUB
|
quay.io/biocontainers/colorid_bv |
singularity registry hpc automated addition for colorid_bv |
colorid_bv |
|
GITHUB
|
quay.io/biocontainers/colormap |
shpc-registry automated BioContainers addition for colormap |
easydev_buildPackage, ibrowse, multigit, browse, easy_install-3.6, qhelpconverter, pylupdate5, pyrcc5, pyuic5, sip |
|
GITHUB
|
quay.io/biocontainers/combined-pvalues |
shpc-registry automated BioContainers addition for combined-pvalues |
comb-p, toolshed, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/comebin |
singularity registry hpc automated addition for comebin |
run_comebin.sh, checkm, FragGeneScan, hmmc2, hmmerfm-exactmatch, run_FragGeneScan.pl, rppr, guppy, pplacer, torchrun, ninja, igraph, scanpy, convert-caffe2-to-onnx, convert-onnx-to-caffe2, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch |
|
GITHUB
|
quay.io/biocontainers/commec |
singularity registry hpc automated addition for commec |
commec, bsmp2info, fsa2xml, gbf2info, just-top-hits, systematic-mutations, taxonkit, xmlget, xmltext, aaindexextract, abiview, acdgalaxy, acdlog, acdpretty, acdtable, acdtrace, acdvalid, aligncopy, aligncopypair, antigenic, assemblyget, backtranambig, backtranseq, banana, biosed, btwisted |
|
GITHUB
|
quay.io/biocontainers/commet |
shpc-registry automated BioContainers addition for commet |
Commet.py, bvop, compare_reads, dendro.R, extract_reads, filter_reads, heatmap.r, index_and_search, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/compalignp |
shpc-registry automated BioContainers addition for compalignp |
afetch, alistat, compalign, compalignp, compstruct, revcomp, seqsplit, seqstat, sfetch, shuffle, sindex, sreformat, translate, weight |
|
GITHUB
|
quay.io/biocontainers/comparative-annotation-toolkit |
shpc-registry automated BioContainers addition for comparative-annotation-toolkit |
SplicedAlignment.pm, _toil_mesos_executor, _toil_worker, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, autoRun.pathInfo, axtChain, bam2wig, bamToPsl, bamtools-2.4.1, bedSort, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, cegma2gff.pl, chainMergeSort, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, clusterGenes, createAugustusJoblist.pl, cwltest, cwltoil, del_from_prfl.pl, espoca, evalCGP.pl, eval_dualdecomp.pl, exonerate2hints.pl, exoniphyDb2hints.pl, extractTranscriptEnds.pl, filter-ppx.pl, filterGenes.pl, filterGenesIn_mRNAname.pl, filterGenesIn_mRNAname.pl.patch, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, galaxy-tool-test, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, genePredToBed, genePredToFakePsl, genePredToGtf, getAnnoFasta.pl, getSeq, gff2gbSmallDNA.pl, gff2ps_mycustom, gff3ToGenePred, gffGetmRNA.pl, gp2othergp.pl, gtf2gff.pl, gtf2gff.pl.origexit, gtfToGenePred, hal2maf_split.pl, helpMod.pm, intron2exex.pl, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, load2sqlitedb, lp_solve, luigi, luigi-deps, luigi-deps-tree, luigi-grep, luigid, maf2conswig.pl, makeMatchLists.pl, makeUtrTrainingSet.pl, maskNregions.pl, mock-cwl-runner, moveParameters.pl, msa2prfl.pl, mulled-build, mulled-build-channel, mulled-build-files, mulled-build-tool, mulled-search, new_species.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, peptides2alternatives.pl, peptides2hints.pl, phastconsDB2hints.pl, polyA2hints.pl, prints2prfl.pl, pslCDnaFilter, pslCheck, pslMap, pslMap.pl, pslMapPostChain, pslPosTarget, pslRecalcMatch, pslToBigPsl, pyfasta, randomSplit.pl, ratewig.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, samMap.pl, scipiogff2gff.pl, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, splitMfasta.pl, split_wiggle.pl, summarizeACGTcontent.pl, toil, toil-cwl-runner, toil-wdl-runner, transMap2hints.pl, transMapPslToGenePred, uniquePeptides.pl, utrgff2gbrowse.pl, webserver-results.body, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, wsdump.py, yaml2gff.1.4.pl, augustus, bam2hints, cwltool, etraining, fastBlockSearch, filterBam, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign |
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GITHUB
|
quay.io/biocontainers/compare-reads |
shpc-registry automated BioContainers addition for compare-reads |
guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, python2-config, python2.7-config, python2 |
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GITHUB
|
quay.io/biocontainers/comparem |
shpc-registry automated BioContainers addition for comparem |
comparem, diamond, prodigal, futurize, pasteurize, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/comparem2 |
singularity registry hpc automated addition for comparem2 |
archspec, asscom2, bsdunzip, comparem2, distro, jsondiff, jsonpatch, numpy-config, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex, rst2xml, jsonpointer, mamba-package, conda2solv, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, conda-env, cph, bsdcat, bsdcpio, bsdtar, yte, plac_runner.py, docutils, pulptest, cbc, clp, snakemake-bash-completion, humanfriendly, snakemake, tabulate, jupyter-trust |
|
GITHUB
|
quay.io/biocontainers/compleasm |
singularity registry hpc automated addition for compleasm |
compleasm, hb-info, jwebserver, miniprot, run-sepp.sh, run_sepp.py, run_upp.py, seppJsonMerger.jar, split_sequences.py, hmmc2, hmmerfm-exactmatch, guppy, pplacer, dendropy-format, tjbench, sumlabels.py, sumtrees.py, jpackage, cups-config, ippeveprinter, ipptool, alimask, hmmconvert, hmmemit, hmmfetch, hmmlogo, hmmpgmd, hmmpress, hmmscan, hmmsearch, hmmsim, hmmstat, jackhmmer, makehmmerdb |
|
GITHUB
|
quay.io/biocontainers/comut |
shpc-registry automated BioContainers addition for comut |
f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc |
|
GITHUB
|
quay.io/biocontainers/concoct |
shpc-registry automated BioContainers addition for concoct |
concoct, concoct_coverage_table.py, concoct_refine, cut_up_fasta.py, extract_fasta_bins.py, merge_cutup_clustering.py, nosetests-3.9, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info |
|
GITHUB
|
quay.io/biocontainers/concoord |
singularity registry hpc automated addition for concoord |
dist, dist.exe, disco |
|
GITHUB
|
quay.io/biocontainers/condiga |
singularity registry hpc automated addition for condiga |
condiga, taxonkit, vba_extract.py, convert, f2py3.11, sdust, k8, paftools.js, minimap2, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tqdm, python3.1 |
|
GITHUB
|
quay.io/biocontainers/conduit-assembler |
shpc-registry automated BioContainers addition for conduit-assembler |
conduit, conduitUtils, perl5.32.0, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s |
|
GITHUB
|
quay.io/biocontainers/confindr |
shpc-registry automated BioContainers addition for confindr |
confindr, confindr.py, confindr_create_db, confindr_database_setup, kma, kma_index, kma_shm, kma_update, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, sketchblacklist2.sh, splitribo.sh, addssu.sh |
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GITHUB
|
quay.io/biocontainers/conifer |
singularity registry hpc automated addition for conifer |
conifer, is_a_parent_of_b, show_ancestors, taxid_name |
|
GITHUB
|
quay.io/biocontainers/conipher |
singularity registry hpc automated addition for conipher |
git2, hb-info, f2py3.11, tjbench, glpsol, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, pandoc, python3.1 |
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GITHUB
|
quay.io/biocontainers/connectome-workbench |
shpc-registry automated BioContainers addition for connectome-workbench |
|
|
GITHUB
|
quay.io/biocontainers/connor |
shpc-registry automated BioContainers addition for connor |
connor, cygdb, cython, cythonize, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl |
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GITHUB
|
quay.io/biocontainers/consan |
shpc-registry automated BioContainers addition for consan |
bstats, comppair, conus_compare, conus_train, pModel, scompare, sfold, strain_ml |
|
GITHUB
|
quay.io/biocontainers/consel |
shpc-registry automated BioContainers addition for consel |
catass, catci, catmt, catpv, catrep, consel, makerep, makermt, randrep, seqmt, treeass |
|
GITHUB
|
quay.io/biocontainers/consensify |
singularity registry hpc automated addition for consensify |
consensify_c |
|
GITHUB
|
quay.io/biocontainers/consensusfixer |
shpc-registry automated BioContainers addition for consensusfixer |
ConsensusFixer, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/consent |
shpc-registry automated BioContainers addition for consent |
CONSENT-correct, CONSENT-correction, CONSENT-explode, CONSENT-merge, CONSENT-polish, CONSENT-polishing, CONSENT-reformatPAF, sdust, paftools.js, minimap2, k8 |
|
GITHUB
|
quay.io/biocontainers/consplice |
singularity registry hpc automated addition for consplice |
consplice, gsort, cyvcf2, gff2gff.py, coloredlogs, humanfriendly, tabulate, natsort, faidx, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, f2py3.8, htsfile, bgzip, tabix, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/constava |
singularity registry hpc automated addition for constava |
constava, gsd, mrcfile-header, mrcfile-validate, nc3tonc4, nc4tonc3, ncinfo, h5tools_test_utils, h5fuse.sh, h5delete, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff, hdp |
|
GITHUB
|
quay.io/biocontainers/constax |
shpc-registry automated BioContainers addition for constax |
AbundanceStats, AlignmentTools, Clustering, FrameBot, KmerFilter, ProbeMatch, ReadSeq, SeqFilters, SequenceMatch, classifier, constax, constax_no_inputs.sh, hmmgs, vsearch, CA.pm, cacert.pem, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras, pm-collect |
|
GITHUB
|
quay.io/biocontainers/constellations |
shpc-registry automated BioContainers addition for constellations |
constellations, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/contammix |
shpc-registry automated BioContainers addition for contammix |
contammix, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa |
|
GITHUB
|
quay.io/biocontainers/contatester |
singularity registry hpc automated addition for contatester |
calculAllelicBalance.sh, checkContaminant.sh, contaReport.R, contatester, depth_estim_from_vcf.sh, recupConta.sh, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun, shmemcc, shmemfort, shmemrun, flask, gff2gff.py, aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info, opal_wrapper, orte-clean, orte-info, orte-server |
|
GITHUB
|
quay.io/biocontainers/conterminator |
shpc-registry automated BioContainers addition for conterminator |
conterminator, gawk-5.1.0, awk, gawk |
|
GITHUB
|
quay.io/biocontainers/contignet |
singularity registry hpc automated addition for contignet |
ContigNet, mpg123, mpg123-id3dump, mpg123-strip, orc-bugreport, orcc, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, libgcrypt-config, mpicalc, yat2m, torchrun, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, attr, balsam, getfattr, jackd |
|
GITHUB
|
quay.io/biocontainers/contigtax |
shpc-registry automated BioContainers addition for contigtax |
contigtax, evaluate_contigtax.py, ete3, compile-et.pl, prerr.properties, diamond, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config |
|
GITHUB
|
quay.io/biocontainers/contrafold |
shpc-registry automated BioContainers addition for contrafold |
contrafold, score_prediction, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/control-freec |
shpc-registry automated BioContainers addition for control-freec |
_makeGraph_Chromosome.R, assess_significance.R, freec, freec2bed.pl, freec2circos.pl, get_fasta_lengths.pl, makeGraph.R, makeGraph.R~, makeGraph_Chromosome.R, vcf2snpFreec.pl, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa |
|
GITHUB
|
quay.io/biocontainers/conus |
shpc-registry automated BioContainers addition for conus |
ambtest, conus_compare, conus_fold, conus_train, findopt, pocheck, reorder, scheck, stk2ct, weedamb |
|
GITHUB
|
quay.io/biocontainers/convert_zero_one_based |
shpc-registry automated BioContainers addition for convert_zero_one_based |
convert_zero_one_based, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/coolbox |
shpc-registry automated BioContainers addition for coolbox |
coolbox, jupyter-console, jupyter-qtconsole, jupyter-server, voila, wsdump.py, cooler, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix |
|
GITHUB
|
quay.io/biocontainers/cooler |
shpc-registry automated BioContainers addition for cooler |
cooler, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix, pairs_merger |
|
GITHUB
|
quay.io/biocontainers/coolpuppy |
singularity registry hpc automated addition for coolpuppy |
aomdec, aomenc, coolpup.py, cooltools, dask, dav1d, dividepups.py, m2r2, plotpup.py, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, aec, cooler, imageio_download_bin, imageio_remove_bin, skivi, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix, pairs_merger |
|
GITHUB
|
quay.io/biocontainers/cooltools |
shpc-registry automated BioContainers addition for cooltools |
cooltools, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng |
|
GITHUB
|
quay.io/biocontainers/copernicusmarine |
singularity registry hpc automated addition for copernicusmarine |
cachier, copernicusmarine, h5fuse, nc3tonc4, nc4tonc3, ncinfo, pysemver, watchmedo, dask, zipcmp, zipmerge, ziptool, jp.py, h5delete, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff, hdp |
|
GITHUB
|
quay.io/biocontainers/coprarna |
shpc-registry automated BioContainers addition for coprarna |
CopraRNA2.pl, IntaRNA, IntaRNA_1ui.pl, IntaRNA_up_1ui.pl, RNAmultifold, _fclique, _fconsense, _fcontml, _fcontrast, _fdiscboot, _fdnacomp, _fdnadist, _fdnainvar, _fdnaml, _fdnamlk, _fdnamove, _fdnapars, _fdnapenny, _fdollop, _fdolmove, _fdolpenny, _fdrawgram, _fdrawtree, _ffactor, _ffitch, _ffreqboot, _fgendist, _fkitsch, _fmix, _fmove, _fneighbor, _fpars, _fpenny, _fproml, _fpromlk, _fprotdist, _fprotpars, _frestboot, _frestdist, _frestml, _fretree, _fseqboot, _fseqbootall, _ftreedist, _ftreedistpair, addtit.pl, blast2homfile.pl, bp_einfo, bp_genbank_ref_extractor, cmpr.pl, convgraph.pl, domclust, fasta2genefile.pl, fclique, fconsense, fcontml, fcontrast, fdiscboot, fdnacomp, fdnadist, fdnainvar, fdnaml, fdnamlk, fdnamove, fdnapars, fdnapenny, fdollop, fdolmove, fdolpenny, fdrawgram, fdrawtree, ffactor, ffitch, ffreqboot, fgendist, fkitsch, fmix, fmove, fneighbor, fpars, fpenny, fproml, fpromlk, fprotdist, fprotpars, frestboot, frestdist, frestml, fretree, fseqboot, fseqbootall, ftreedist, ftreedistpair, phantomjs, clustalo, _bdftogd, _gd2copypal, _gd2togif, _gd2topng, _gdcmpgif, _gdparttopng, _gdtopng, _giftogd2, _pngtogd |
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GITHUB
|
quay.io/biocontainers/coptr |
singularity registry hpc automated addition for coptr |
coptr, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fonttools, pyftmerge, pyftsubset, ttx |
|
GITHUB
|
quay.io/biocontainers/coral |
shpc-registry automated BioContainers addition for coral |
coral, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/core-snp-filter |
singularity registry hpc automated addition for core-snp-filter |
coresnpfilter, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/corekaburra |
singularity registry hpc automated addition for corekaburra |
Corekaburra, gffutils-cli, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, activate-global-python-argcomplete, fonttools, pyftmerge, pyftsubset, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc |
|
GITHUB
|
quay.io/biocontainers/coreutils |
shpc-registry automated BioContainers addition for coreutils |
basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
|
GITHUB
|
quay.io/biocontainers/corgi |
singularity registry hpc automated addition for corgi |
alembic, celery, configure_accelerate, cookiecutter, corgi, corgi-train, databricks, dbfs, gunicorn, mlflow, optuna, pathy, pyaml, pybtex, pybtex-convert, pybtex-format, shortuuid, slugify, spacy, sqlformat, termgraph, torchapp, torchapp-imageclassifier, wandb, wb, weasel, wsdump, httpx, pbr, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, isympy, torchrun, elasticurl, elasticurl_cpp, elastipubsub, plasma-store-server, plasma_store, mako-render, csv-import, markdown-it, orc-memory, orc-scan, timezone-dump, convert-caffe2-to-onnx, convert-onnx-to-caffe2, orc-contents, orc-metadata, orc-statistics, sha256_profile, h5delete, gflags_completions.sh |
|
GITHUB
|
quay.io/biocontainers/corneto |
singularity registry hpc automated addition for corneto |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/correlationplus |
shpc-registry automated BioContainers addition for correlationplus |
correlationplus, evol, gsd, nc3tonc4, nc4tonc3, ncinfo, prody, numba, pycc, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy |
|
GITHUB
|
quay.io/biocontainers/corset |
shpc-registry automated BioContainers addition for corset |
corset, corset_fasta_ID_changer |
|
GITHUB
|
quay.io/biocontainers/corsid |
shpc-registry automated BioContainers addition for corsid |
corsid, corsid_a, xgboost, tqdm, chardetect, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/cortex_con |
shpc-registry automated BioContainers addition for cortex_con |
cortex_con_31 |
|
GITHUB
|
quay.io/biocontainers/cortexpy |
shpc-registry automated BioContainers addition for cortexpy |
cortexpy, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/cosg |
singularity registry hpc automated addition for cosg |
h5tools_test_utils, h5fuse.sh, scanpy, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, h5delete, numba, natsort, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tqdm |
|
GITHUB
|
quay.io/biocontainers/cosi2 |
shpc-registry automated BioContainers addition for cosi2 |
coalescent, get_recomap, recomap_hapmap2, recosimulate, sample_stats_extra, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/cosigt |
singularity registry hpc automated addition for cosigt |
cosigt |
|
GITHUB
|
quay.io/biocontainers/cospar |
singularity registry hpc automated addition for cospar |
bioservices, gseapy, h5fuse.sh, browse, mpg123, mpg123-id3dump, mpg123-strip, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, libgcrypt-config, mpicalc, yat2m, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, attr, balsam, getfattr, lprodump, lrelease-pro, lupdate-pro |
|
GITHUB
|
quay.io/biocontainers/count_constant_sites |
shpc-registry automated BioContainers addition for count_constant_sites |
count_constant_sites |
|
GITHUB
|
quay.io/biocontainers/counterr |
shpc-registry automated BioContainers addition for counterr |
counterr, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, jpgicc |
|
GITHUB
|
quay.io/biocontainers/cov-lineages |
shpc-registry automated BioContainers addition for cov-lineages |
lineages, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/coverageanomalyscanner |
singularity registry hpc automated addition for coverageanomalyscanner |
cas |
|
GITHUB
|
quay.io/biocontainers/coverm |
shpc-registry automated BioContainers addition for coverm |
coverm, dashing, remove_minimap2_duplicated_headers, starcode, fastANI, sdust, paftools.js, minimap2, k8, qualfa2fq.pl, xa2multi.pl, bwa, fasta-sanitize.pl, plot-ampliconstats |
|
GITHUB
|
quay.io/biocontainers/covid-spike-classification |
shpc-registry automated BioContainers addition for covid-spike-classification |
covid-spike-classification, tracy, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, fasta-sanitize.pl |
|
GITHUB
|
quay.io/biocontainers/covsonar |
singularity registry hpc automated addition for covsonar |
mpire-dashboard, sonar, xmlget, xmltext, aaindexextract, abiview, acdc, acdgalaxy, acdlog, acdpretty, acdtable, acdtrace, acdvalid, aligncopy, aligncopypair, antigenic, assemblyget, backtranambig, backtranseq, banana, biosed, btwisted, cachedas, cachedbfetch, cacheebeyesearch, cacheensembl, chaos |
|
GITHUB
|
quay.io/biocontainers/covtobed |
shpc-registry automated BioContainers addition for covtobed |
covtobed, bamtools |
|
GITHUB
|
quay.io/biocontainers/cpat |
shpc-registry automated BioContainers addition for cpat |
cpat.py, make_hexamer_tab.py, make_logitModel.py, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
|
GITHUB
|
quay.io/biocontainers/cpc2 |
singularity registry hpc automated addition for cpc2 |
CPC2.py, compress.py, seqio.py, svm-predict, svm-scale, svm-train, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/cpgeneprofiler |
shpc-registry automated BioContainers addition for cpgeneprofiler |
pdfsig, pdfattach, pdfdetach, pdffonts, pdfimages, pdfinfo, pdfseparate, pdftocairo, pdftohtml, pdftoppm |
|
GITHUB
|
quay.io/biocontainers/cpinsim |
shpc-registry automated BioContainers addition for cpinsim |
cpinsim, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/cpstools |
singularity registry hpc automated addition for cpstools |
cpstools, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/cpt_gffparser |
shpc-registry automated BioContainers addition for cpt_gffparser |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/cptac |
shpc-registry automated BioContainers addition for cptac |
runxlrd.py, flask, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/crabs |
singularity registry hpc automated addition for crabs |
crabs, cutadapt, vsearch, igzip, muscle, pbunzip2, pbzcat, pbzip2, pigz, unpigz, f2py3.6, idn2, tqdm, wget, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, opj_compress, opj_decompress, opj_dump, jpgicc |
|
GITHUB
|
quay.io/biocontainers/crabz |
singularity registry hpc automated addition for crabz |
crabz |
|
GITHUB
|
quay.io/biocontainers/cramino |
singularity registry hpc automated addition for cramino |
cramino |
|
GITHUB
|
quay.io/biocontainers/cramtools |
shpc-registry automated BioContainers addition for cramtools |
cramtools, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/craq |
singularity registry hpc automated addition for craq |
craq, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, sdust, k8, paftools.js, minimap2, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/crass |
shpc-registry automated BioContainers addition for crass |
crass, crass-assembler, crisprtools, CreateDOMDocument, DOMCount, DOMPrint, EnumVal, MemParse, PParse, PSVIWriter, Redirect, SAX2Count, SAX2Print |
|
GITHUB
|
quay.io/biocontainers/crb-blast |
shpc-registry automated BioContainers addition for crb-blast |
bioruby, br_biofetch.rb, br_bioflat.rb, br_biogetseq.rb, br_pmfetch.rb, bundle, bundler, crb-blast, gdbm_dump, gdbm_load, gdbmtool, build.sh, common.go, rchive.go, setup-deps.log, setup.sh, xtract.go, erb |
|
GITHUB
|
quay.io/biocontainers/crimson |
shpc-registry automated BioContainers addition for crimson |
crimson, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/crispector |
shpc-registry automated BioContainers addition for crispector |
crispector, fastp, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7 |
|
GITHUB
|
quay.io/biocontainers/crispector2 |
singularity registry hpc automated addition for crispector2 |
crispector, fastp, igzip, f2py3.7, tqdm, fonttools, pyftmerge, pyftsubset, ttx, brotli, 2to3-3.7, idle3.7, pydoc3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, python3.7, opj_compress, opj_decompress, opj_dump, pyvenv, jpgicc, linkicc, psicc, tificc |
|
GITHUB
|
quay.io/biocontainers/crisper_recognition_tool |
shpc-registry automated BioContainers addition for crisper_recognition_tool |
crt, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/crisprbact |
shpc-registry automated BioContainers addition for crisprbact |
crisprbact, keyring, pkginfo, poetry, doesitcache, jsonschema, dbus-cleanup-sockets, dbus-daemon, dbus-launch, dbus-monitor, dbus-run-session, dbus-send, dbus-test-tool, dbus-update-activation-environment |
|
GITHUB
|
quay.io/biocontainers/crispresso |
shpc-registry automated BioContainers addition for crispresso |
|
|
GITHUB
|
quay.io/biocontainers/crispresso2 |
shpc-registry automated BioContainers addition for crispresso2 |
CRISPResso, CRISPRessoAggregate, CRISPRessoBatch, CRISPRessoCompare, CRISPRessoPooled, CRISPRessoPooledWGSCompare, CRISPRessoWGS, flash, trimmomatic, cups-config, ippeveprinter, ipptool, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l |
|
GITHUB
|
quay.io/biocontainers/crispritz |
shpc-registry automated BioContainers addition for crispritz |
crispritz.py, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical, bam2bed_sge, bam2bed_sge-float128 |
|
GITHUB
|
quay.io/biocontainers/crisprlungo |
singularity registry hpc automated addition for crisprlungo |
CRISPResso, CRISPRessoAggregate, CRISPRessoBatch, CRISPRessoCompare, CRISPRessoPooled, CRISPRessoPooledWGSCompare, CRISPRessoWGS, CRISPRlungo, CRISPRlungoBatch, CRISPRlungoCompare, c-index-test, cas-offinder, ccmake, clang, clang++, clang-8, clang-check, clang-cl, clang-cpp, clang-extdef-mapping, clang-format, clang-import-test, clang-offload-bundler, clang-refactor, clang-rename, cmake, cpack, ctest, diagtool, ed2k-link, edonr256-hash, edonr512-hash, git-clang-format, gost12-256-hash, gost12-512-hash, has160-hash, hmaptool, magnet-link, poclcc, rhash, scan-build, scan-view, sfv-hash, tiger-hash, tth-hash, whirlpool-hash, flash, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, tjbench, cutadapt, trimmomatic, igzip, pbunzip2, pbzcat, pbzip2, jpackage, pigz, unpigz |
|
GITHUB
|
quay.io/biocontainers/crisprme |
shpc-registry automated BioContainers addition for crisprme |
crispritz.py, crisprme.py, dash-generate-components, gunicorn, renderer, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical, bam2bed_sge, bam2bed_sge-float128 |
|
GITHUB
|
quay.io/biocontainers/crnsimulator |
shpc-registry automated BioContainers addition for crnsimulator |
crnsimulator, isympy, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc |
|
GITHUB
|
quay.io/biocontainers/crocodeel |
singularity registry hpc automated addition for crocodeel |
crocodeel, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tqdm, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/cromshell |
shpc-registry automated BioContainers addition for cromshell |
cromshell, jq, onig-config, womtool, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/cromwell-tools |
shpc-registry automated BioContainers addition for cromwell-tools |
cromwell-tools, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, chardetect, 2to3-3.8, idle3.8, pydoc3.8 |
|
GITHUB
|
quay.io/biocontainers/cromwell |
shpc-registry automated BioContainers addition for cromwell |
|
|
GITHUB
|
quay.io/biocontainers/croo |
shpc-registry automated BioContainers addition for croo |
autouri, aws, aws.cmd, aws_bash_completer, aws_completer, aws_zsh_completer.sh, caper, create_instance.sh, croo, miniwdl, pygtail, pyhocon, run_mysql_server_docker.sh, run_mysql_server_singularity.sh, wsdump.py, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, coloredlogs, humanfriendly, xkbcli, jp.py, py.test, pytest |
|
GITHUB
|
quay.io/biocontainers/crossmap |
shpc-registry automated BioContainers addition for crossmap |
CrossMap.py, wigToBigWig, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py |
|
GITHUB
|
quay.io/biocontainers/crumble |
shpc-registry automated BioContainers addition for crumble |
crumble, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/crussmap |
singularity registry hpc automated addition for crussmap |
crussmap |
|
GITHUB
|
quay.io/biocontainers/crux-toolkit |
shpc-registry automated BioContainers addition for crux-toolkit |
crux |
|
GITHUB
|
quay.io/biocontainers/cryfa |
shpc-registry automated BioContainers addition for cryfa |
cryfa, keygen |
|
GITHUB
|
quay.io/biocontainers/cryptkeeper |
singularity registry hpc automated addition for cryptkeeper |
cryptkeeper, ostir, promoter-calculator, rhotermpredict, RNAmultifold, numpy-config, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex, RNAsnoop, RNAfold, Kinfold, RNALfold, RNAaliduplex, RNAalifold, RNAcofold, RNAdistance, RNAduplex |
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GITHUB
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quay.io/biocontainers/crypto_typer |
shpc-registry automated BioContainers addition for crypto_typer |
crypto_typer, blast_report, blastdb_convert, blastdb_path, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2 |
|
GITHUB
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quay.io/biocontainers/cryptogenotyper |
shpc-registry automated BioContainers addition for cryptogenotyper |
cryptogenotyper, clustalw, CA.pm, cacert.pem, clustalw2, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras |
|
GITHUB
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quay.io/biocontainers/csb |
shpc-registry automated BioContainers addition for csb |
csb-bfit, csb-bfite, csb-buildhmm, csb-csfrag, csb-embd, csb-hhfrag, csb-hhsearch, csb-precision, csb-promix, csb-test, qhelpconverter, pylupdate5, pyrcc5, pyuic5, sip, qdoc, gst-device-monitor-1.0, gst-discoverer-1.0, gst-play-1.0, fixqt4headers.pl |
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GITHUB
|
quay.io/biocontainers/csblast |
shpc-registry automated BioContainers addition for csblast |
csblast, csbuild |
|
GITHUB
|
quay.io/biocontainers/cstag-cli |
singularity registry hpc automated addition for cstag-cli |
cstag, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/cstag |
singularity registry hpc automated addition for cstag |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/csvtk |
shpc-registry automated BioContainers addition for csvtk |
csvtk |
|
GITHUB
|
quay.io/biocontainers/ctat-lncrna |
shpc-registry automated BioContainers addition for ctat-lncrna |
alignTranscripts1.0, lastz, lastz_D, license.txt, liftOver, lncrna, makeWebsite, slncky, slncky.v1.0, my_print_defaults, mysql_config, perror, conda_build.sh, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv |
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GITHUB
|
quay.io/biocontainers/ctat-metagenomics |
shpc-registry automated BioContainers addition for ctat-metagenomics |
centrifuge, centrifuge-BuildSharedSequence.pl, centrifuge-RemoveEmptySequence.pl, centrifuge-RemoveN.pl, centrifuge-build, centrifuge-build-bin, centrifuge-class, centrifuge-compress.pl, centrifuge-download, centrifuge-inspect, centrifuge-inspect-bin, centrifuge-kreport, centrifuge-sort-nt.pl, centrifuge_evaluate.py, centrifuge_simulate_reads.py, metagenomics, tar, CA.pm, cacert.pem, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras, pm-collect |
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GITHUB
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quay.io/biocontainers/ctat-mutations |
shpc-registry automated BioContainers addition for ctat-mutations |
ctat_mutations, gatk, STAR, STARlong, picard, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii |
|
GITHUB
|
quay.io/biocontainers/cthreepo |
shpc-registry automated BioContainers addition for cthreepo |
cthreepo, chardetect, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/ctseq |
shpc-registry automated BioContainers addition for ctseq |
Bismark_alignment_modes.pdf, NOMe_filtering, _config.yml, bam2nuc, bismark, bismark2bedGraph, bismark2report, bismark2summary, bismark_genome_preparation, bismark_methylation_extractor, compare_HLA.py, compare_HLA.py.bak, compare_HLA_Omixon.py, compare_HLA_Omixon.py.bak, copy_bismark_files_for_release.pl, coverage2cytosine, ctseq, deduplicate_bismark, extract_Omixon_HLA.py, extract_Omixon_HLA.py.bak, extract_exons.py, extract_splice_sites.py, filter_non_conversion, hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, hisatgenotype.py, hisatgenotype_HLA_genotyping_PGs.py, hisatgenotype_HLA_genotyping_PGs.py.bak, hisatgenotype_build_genome.py, hisatgenotype_convert_codis.py, hisatgenotype_convert_codis.py.bak, hisatgenotype_extract_codis_data.py, hisatgenotype_extract_codis_data.py.bak, hisatgenotype_extract_cyp_data.py, hisatgenotype_extract_cyp_data.py.bak, hisatgenotype_extract_reads.py, hisatgenotype_extract_vars.py, hisatgenotype_hla_cyp.py, hisatgenotype_locus.py, hisatgenotype_locus_samples.py, hisatgenotype_locus_samples.py.bak, license.txt, methylation_consistency, run_extract_CP.sh, run_extract_ILMN.sh, run_genotype_build.sh, run_hisat2_build.sh, run_type_CP.sh, test_data.fastq, umi_tools, metadata_conda_debug.yaml, cutadapt, pigz, unpigz, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s |
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GITHUB
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quay.io/biocontainers/ctxcore |
singularity registry hpc automated addition for ctxcore |
protoc-25.3.0, numpy-config, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, gflags_completions.sh, numba, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin |
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GITHUB
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quay.io/biocontainers/cufflinks |
shpc-registry automated BioContainers addition for cufflinks |
cuffcompare, cuffdiff, cufflinks, cuffmerge, cuffnorm, cuffquant, gffread, gtf_to_sam, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/curare |
singularity registry hpc automated addition for curare |
bsdcat, bsdcpio, bsdtar, conda2solv, curare, curare_wizard, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, stone, conda-env, cph, pulptest, cbc, clp, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, snakemake, snakemake-bash-completion |
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GITHUB
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quay.io/biocontainers/cured |
singularity registry hpc automated addition for cured |
Bifrost, CURED_FindREs.py, CURED_Main.py, dataformat, datasets, mlst, mlst-ST_mini_genomes, mlst-consistency_checker, mlst-download_pub_mlst, mlst-make_blast_db, mlst-show_seqs, unitig-caller, TMalign, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gawk-5.3.0, gbf2fsa, gbf2ref, gm2ranges, gm2segs |
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GITHUB
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quay.io/biocontainers/curesim |
shpc-registry automated BioContainers addition for curesim |
curesim, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
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GITHUB
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quay.io/biocontainers/curl |
shpc-registry automated BioContainers addition for curl |
curl, curl-config |
|
GITHUB
|
quay.io/biocontainers/curlywhirly |
shpc-registry automated BioContainers addition for curlywhirly |
curlywhirly, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
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GITHUB
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quay.io/biocontainers/curves |
shpc-registry automated BioContainers addition for curves |
AddToBox, Canal, Canion, CartHess2FC.py, ChBox, Cur+, FEW.pl, IPMach.py, MCPB.py, MMPBSA.py, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, bondtype, bondtype.orig, car_to_files.py, ceinutil.py, cestats, charmmlipid2amber.py, cpeinutil.py, cphstats, cpinutil.py, cpptraj, draw_membrane2, elsize, espgen, espgen.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gwh, hcp_getpdb, makeANG_RST, makeDIST_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, pbsa, pdb4amber, prepgen, process_mdout.perl, process_minout.perl, pymdpbsa, pytleap, reduce, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, sqm, sviol, sviol2, teLeap, tleap, ucpp, xaLeap, xleap, xparmed, cygdb, cython, cythonize, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
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GITHUB
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quay.io/biocontainers/customtkinter |
singularity registry hpc automated addition for customtkinter |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, python3.1 |
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GITHUB
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quay.io/biocontainers/cutadapt |
shpc-registry automated BioContainers addition for cutadapt |
cutadapt, pigz, unpigz, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7 |
|
GITHUB
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quay.io/biocontainers/cutesv |
shpc-registry automated BioContainers addition for cutesv |
cuteSV, vcf_sample_filter.py, vcf_filter.py, vcf_melt, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/cutqc |
shpc-registry automated BioContainers addition for cutqc |
cutqc, fastqc_report.Rmd, fastqc_single_report.Rmd, cutadapt, fastqc, igzip, pbunzip2, pbzcat, pbzip2, gawk-5.1.0, awk, gawk, pigz |
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GITHUB
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quay.io/biocontainers/cuttlefish |
shpc-registry automated BioContainers addition for cuttlefish |
cuttlefish |
|
GITHUB
|
quay.io/biocontainers/cvbio |
shpc-registry automated BioContainers addition for cvbio |
cvbio, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
|
quay.io/biocontainers/cvlr |
singularity registry hpc automated addition for cvlr |
cvlr-cluster, cvlr-meth-of-bam, cvlr-stats.py, cvlrcommon.py, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, htsfile, bgzip, tabix, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
|
quay.io/biocontainers/cwl2wdl |
shpc-registry automated BioContainers addition for cwl2wdl |
cwl2wdl, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/cwltest |
shpc-registry automated BioContainers addition for cwltest |
black, blackd, cwltest, mock-cwl-runner, schema-salad-doc, schema-salad-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, doesitcache, normalizer, 2to3-3.10 |
|
GITHUB
|
quay.io/biocontainers/cwltool |
shpc-registry automated BioContainers addition for cwltool |
cwltest, cwltool, avro, schema-salad-doc, schema-salad-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, doesitcache, futurize |
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GITHUB
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quay.io/biocontainers/cycle_finder |
singularity registry hpc automated addition for cycle_finder |
blastn_vdb, cycle_finder, tblastn_vdb, gunzip, gzexe, gzip, trf4.10.0-rc.2.linux64.exe, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zmore, znew, trf, uuid, uuid-config, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454 |
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GITHUB
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quay.io/biocontainers/cyntenator |
shpc-registry automated BioContainers addition for cyntenator |
cyntenator |
|
GITHUB
|
quay.io/biocontainers/cyordereddict |
shpc-registry automated BioContainers addition for cyordereddict |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
|
quay.io/biocontainers/cyrcular |
singularity registry hpc automated addition for cyrcular |
cyrcular |
|
GITHUB
|
quay.io/biocontainers/cytocad |
shpc-registry automated BioContainers addition for cytocad |
cytocad, rfmix2tagore.py, tagore, f2py3.6, rsvg-convert, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, fasta-sanitize.pl, shiftBed, plot-ampliconstats, annotateBed |
|
GITHUB
|
quay.io/biocontainers/cytoscape |
shpc-registry automated BioContainers addition for cytoscape |
Cytoscape, cytoscape.sh, gen_vmoptions.sh, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell |
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GITHUB
|
quay.io/biocontainers/cytosnake |
singularity registry hpc automated addition for cytosnake |
cytosnake, eido, jsondiff, jsonpatch, jsonpointer, protoc-23.4.0, mamba-package, conda2solv, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, markdown-it, bsdcat, bsdcpio, bsdtar, conda-env, cph, stone, yte, plac_runner.py, docutils, pulptest, cbc, clp, humanfriendly, snakemake, snakemake-bash-completion, jp.py |
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GITHUB
|
quay.io/biocontainers/cytotrace2-python |
singularity registry hpc automated addition for cytotrace2-python |
cytotrace2, torch_shm_manager, pandoc-lua, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, protoc-25.3.0, numpy-config, torchrun, isympy, h5tools_test_utils, pandoc-server, scanpy, convert-caffe2-to-onnx, convert-onnx-to-caffe2, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology |
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GITHUB
|
quay.io/biocontainers/cyushuffle |
shpc-registry automated BioContainers addition for cyushuffle |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/cyvcf |
shpc-registry automated BioContainers addition for cyvcf |
|
|
GITHUB
|
quay.io/biocontainers/cyvcf2 |
shpc-registry automated BioContainers addition for cyvcf2 |
cyvcf2, coloredlogs, humanfriendly, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
|
GITHUB
|
quay.io/biocontainers/czlab_perl_lib |
singularity registry hpc automated addition for czlab_perl_lib |
bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc, bp_genbank2gff3, bp_index, bp_local_taxonomydb_query, bp_make_mrna_protein, bp_mask_by_search, bp_mrtrans, bp_mutate, bp_nexus2nh, bp_nrdb, bp_oligo_count, bp_process_gadfly, bp_process_sgd, bp_revtrans-motif, bp_search2alnblocks, bp_search2gff |
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GITHUB
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quay.io/biocontainers/d4binding |
singularity registry hpc automated addition for d4binding |
starcode |
|
GITHUB
|
quay.io/biocontainers/d4tools |
singularity registry hpc automated addition for d4tools |
d4tools, starcode |
|
GITHUB
|
quay.io/biocontainers/dadaist2-full |
shpc-registry automated BioContainers addition for dadaist2-full |
D2-AbundancesPhyloseq.R, D2-AlphaDivPhyloseq.R, D2-BetaDivPhyloseq.R, D2-FilterPhyloseq.R, D2-checkLibrary.R, D2-checkPhyloseq.R, D2-dada-SE.R, D2-dada-taxonomy.R, D2-dada.R, D2-decipher.R, D2-importPhyloseq.R, D2-updateMetadataPhyloseq.R, dadaist2, dadaist2-addTaxToFasta, dadaist2-alpha, dadaist2-assigntax, dadaist2-crosstalk, dadaist2-dada2fasta, dadaist2-exporter, dadaist2-getdb, dadaist2-importq2, dadaist2-mergeseqs, dadaist2-metadata, dadaist2-mqc-report, dadaist2-normalize, dadaist2-phyloseqCheck, dadaist2-phyloseqMake, dadaist2-taxonomy-binning, dadaist2-taxplot, dadaist2-transposetaxa.py, fqc, fqlen.pl, fu-16Sregion, fu-cov, fu-homocomp, fu-index, fu-multirelabel, fu-nanotags, fu-orf, fu-primers, fu-shred, fu-sw, fu-tabcheck, fu-virfilter, installPackages.R, itsxpress, qax, rhea-alpha.R, rhea-binning.R, rhea-normalize.R, seqfu, clustalo, kmutate.sh, multiqc, runhmm.sh, zip, fastp, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh |
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GITHUB
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quay.io/biocontainers/dadaist2 |
shpc-registry automated BioContainers addition for dadaist2 |
|
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GITHUB
|
quay.io/biocontainers/dadi |
shpc-registry automated BioContainers addition for dadi |
compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, qwebengine_convert_dict |
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GITHUB
|
quay.io/biocontainers/daisysuite |
shpc-registry automated BioContainers addition for daisysuite |
DaisySuite, DaisySuite_example, DaisySuite_setup, DaisySuite_stats, DaisySuite_template, add-score-tags-to-bam, bam-to-alignment-priors, bam2fastq, clever, clever-core, ctk-version, evaluate-sv-predictions, extract-bad-reads, filter-bam, filter-variations, genotyper, gustaf, gustaf_mate_joining, insert-length-histogram, laser, laser-core, laser-recalibrate, mason_frag_sequencing, mason_genome, mason_materializer, mason_methylation, mason_simulator, mason_splicing, mason_variator, mateclever, mateclever-compute-rois, merge-to-vcf, merge-variation-lists, multiline-to-xa, plot-insert-size-distribution, postprocess-predictions, precompute-distributions, read-group-stats, remove-redundant-variations, sak, split-priors-by-chromosome, split-reads, stellar, vcf-to-deletionlist, yara_indexer, yara_mapper, stone, snakemake, snakemake-bash-completion, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config |
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GITHUB
|
quay.io/biocontainers/dajin2 |
singularity registry hpc automated addition for dajin2 |
DAJIN2, kaleido, mathjax-path, waitress-serve, minimap2.py, flask, certutil, nspr-config, nss-config, pk12util, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/daligner |
shpc-registry automated BioContainers addition for daligner |
HPC.daligner, LAcat, LAcheck, LAdump, LAindex, LAmerge, LAshow, LAsort, LAsplit, daligner |
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GITHUB
|
quay.io/biocontainers/damageprofiler |
shpc-registry automated BioContainers addition for damageprofiler |
damageprofiler, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/damasker |
shpc-registry automated BioContainers addition for damasker |
HPC.REPmask, HPC.TANmask, REPmask, TANmask, datander |
|
GITHUB
|
quay.io/biocontainers/damidseq_pipeline |
shpc-registry automated BioContainers addition for damidseq_pipeline |
damidseq_pipeline, gatc.track.maker.pl, gff2tdf.pl, igvtools, varfilter.py, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, jaotc |
|
GITHUB
|
quay.io/biocontainers/dammet |
shpc-registry automated BioContainers addition for dammet |
DamMet, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/dammit |
shpc-registry automated BioContainers addition for dammit |
SplicedAlignment.pm, TransDecoder.LongOrfs, TransDecoder.Predict, aa2nonred.pl, abundance-dist-single.py, abundance-dist.py, annotate-partitions.py, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, autoRun.pathInfo, bam2wig, bamToWig.py, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, cdna_alignment_orf_to_genome_orf.pl, cegma2gff.pl, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, compare_masking.pl, compileSpliceCands, computeFlankingRegion.pl, compute_base_probs.pl, count-median.py, createAugustusJoblist.pl, dammit, del_from_prfl.pl, do-partition.py, doit, espoca, evalCGP.pl, eval_dualdecomp.pl, eval_multi_gtf.pl, exclude_similar_proteins.pl, exonerate2hints.pl, exoniphyDb2hints.pl, extract-long-sequences.py, extract-paired-reads.py, extract-partitions.py, extractTranscriptEnds.pl, fasta_prot_checker.pl, fastq-interleave, fastq-to-fasta.py, ffindex_resume.pl, filter-abund-single.py, filter-abund.py, filter-ppx.pl, filter-stoptags.py, filterGenes.pl, filterGenesIn.pl, filterGenesIn_mRNAname.pl, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, find-knots.py, findGffNamesInFasta.pl, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, gene_list_to_gff.pl, generate_plot, generate_plot.py, getAnnoFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, getSeq, get_FL_accs.pl, get_longest_ORF_per_transcript.pl, get_top_longest_fasta_entries.pl, gff2gbSmallDNA.pl, gff2ps_mycustom, gff3_file_to_bed.pl, gff3_file_to_proteins.pl, gff3_gene_to_gtf_format.pl, gffGetmRNA.pl, gp2othergp.pl, gtf2aa.pl, gtf2gff.pl, gtf_genome_to_cdna_fasta.pl, gtf_to_alignment_gff3.pl, gtf_to_bed.pl, gth2gtf.pl, hal2maf_split.pl, helpMod.pm, interleave-reads.py, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, last-dotplot, last-map-probs, last-merge-batches, last-pair-probs, last-postmask, last-split, last-split8, last-train, lastal, lastal8, lastdb, lastdb8, load-graph.py, load-into-counting.py, load2sqlitedb, lp_solve, maf-convert, maf-cut, maf-join, maf-sort, maf-swap, maf2conswig.pl, make-initial-stoptags.py, makeMatchLists.pl, makeUtrTrainingSet.pl, maskNregions.pl, merge-partitions.py, merge_masking.pl, moveParameters.pl, msa2prfl.pl, new_species.pl, normalize-by-median.py, nr_ORFs_gff3.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parallel-fasta, parallel-fastq, parseSim4Output.pl, partition-graph.py, partition_gtf2gb.pl, pasapolyA2hints.pl, peptides2alternatives.pl, peptides2hints.pl, pfam_runner.pl, phastconsDB2hints.pl, polyA2hints.pl, prints2prfl.pl, pslMap.pl, randomSplit.pl, ratewig.pl, readstats.py, refine_gff3_group_iso_strip_utrs.pl, refine_hexamer_scores.pl, remove_eclipsed_ORFs.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, run_BUSCO.py, run_busco, samMap.pl, sample-reads-randomly.py, scipiogff2gff.pl, score_CDS_likelihood_all_6_frames.pl, select_best_ORFs_per_transcript.pl, seq_n_baseprobs_to_loglikelihood_vals.pl, setStopCodonFreqs.pl, shmlast, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, split-paired-reads.py, splitMfasta.pl, split_wiggle.pl, start_codon_refinement.pl, summarizeACGTcontent.pl, train_start_PWM.pl, transMap2hints.pl, trim-low-abund.py, unique-kmers.py, uniquePeptides.pl, uri_unescape.pl, utrgff2gbrowse.pl, utrrnaseq, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, yaml2gff.1.4.pl, augustus, bam2hints, etraining, fastBlockSearch, filterBam, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign, build.sh |
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GITHUB
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quay.io/biocontainers/danpos |
shpc-registry automated BioContainers addition for danpos |
danpos.py, functions.py, lib.py, reads.py, summits.py, wig.py, wigs.py, wiq.py, f2py2, f2py2.7, bcftools, vcfutils.pl, python2-config, python2.7-config, python2, python2.7, idle, python-config |
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GITHUB
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quay.io/biocontainers/dapcy |
singularity registry hpc automated addition for dapcy |
qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, protoc-25.3.0, dask, cyvcf2, annot-tsv, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, dask-scheduler, dask-ssh, dask-worker, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, bokeh |
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GITHUB
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quay.io/biocontainers/dart |
shpc-registry automated BioContainers addition for dart |
bwt_index, dart |
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GITHUB
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quay.io/biocontainers/das_tool |
shpc-registry automated BioContainers addition for das_tool |
Contigs2Bin_to_Fasta.sh, DAS_Tool, Fasta_to_Contig2Bin.sh, pullseq, seqdiff, erb, gem, irb, rake, rdoc, ri, ruby, funzip, unzipsfx, zipgrep |
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GITHUB
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quay.io/biocontainers/dascrubber |
shpc-registry automated BioContainers addition for dascrubber |
DASedit, DASmap, DASpatch, DASqv, DASrealign, DAStrim, REPqv, REPtrim |
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GITHUB
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quay.io/biocontainers/dashing |
shpc-registry automated BioContainers addition for dashing |
dashing |
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GITHUB
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quay.io/biocontainers/dastk |
singularity registry hpc automated addition for dastk |
barcode_plot, differential_md_score, ma_plot, process_atac, tf_intersect, tf_result_explanations, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap, groupBy |
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GITHUB
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quay.io/biocontainers/data_hacks |
shpc-registry automated BioContainers addition for data_hacks |
bar_chart.py, histogram.py, ninety_five_percent.py, run_for.py, sample.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/datafunk |
shpc-registry automated BioContainers addition for datafunk |
cchardetect, datafunk, datapackage, jsonpointer, tableschema, tabulator, unidecode, runxlrd.py, jp.py, jsonschema, f2py3.8, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8 |
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GITHUB
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quay.io/biocontainers/datamash |
shpc-registry automated BioContainers addition for datamash |
datamash |
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GITHUB
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quay.io/biocontainers/datavzrd |
singularity registry hpc automated addition for datavzrd |
datavzrd |
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GITHUB
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quay.io/biocontainers/datma |
shpc-registry automated BioContainers addition for datma |
assembly_annotation_tool.py, assembly_annotation_tool_seq.py, binning, binning_tool.py, checkm, clame, datma.py, datma_seq.py, exportTools.sh, filterQuality.py, finalReport.py, finalReport2.py, flash2, genFm9, general.py, icarus.py, kaiju, kaiju-addTaxonNames, kaiju-convertMAR.py, kaiju-convertNR, kaiju-excluded-accessions.txt, kaiju-gbk2faa.pl, kaiju-makedb, kaiju-mergeOutputs, kaiju-mkbwt, kaiju-mkfmi, kaiju-multi, kaiju-taxonlistEuk.tsv, kaiju2krona, kaiju2table, kaijup, kaijux, ktClassifyHits, ktImportHits, map_genFm9.py, mapping, mergeNotCombined, merge_tool.py, metaquast, metaquast.py, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, rapifilt, rdp_classifier, removal_tool.py, runDATMA.sh, selectFasta, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, circos, circos.exe, compile.bat, compile.make, gddiag, glimmerhmm, glimmhmm.pl |
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GITHUB
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quay.io/biocontainers/dawg |
shpc-registry automated BioContainers addition for dawg |
dawg, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/dazz_db |
shpc-registry automated BioContainers addition for dazz_db |
Catrack, DAM2fasta, DB2arrow, DB2fasta, DB2quiva, DBdump, DBdust, DBrm, DBshow, DBsplit, DBstats, DBtrim, DBwipe, arrow2DB, fasta2DAM, fasta2DB, quiva2DB, rangen, simulator |
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GITHUB
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quay.io/biocontainers/dbcan |
singularity registry hpc automated addition for dbcan |
hmmscan_parser.py, run_dbcan, diamond, natsort, prodigal, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn, esl-seqrange, esl-seqstat, esl-sfetch, esl-shuffle, esl-ssdraw, esl-translate |
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GITHUB
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quay.io/biocontainers/dbcanlight |
singularity registry hpc automated addition for dbcanlight |
dbcanLight, dbcanLight-hmmparser, dbcanLight-subparser, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/dbghaplo |
singularity registry hpc automated addition for dbghaplo |
dbghaplo, haplotag_bam, lofreq, lofreq2_call_pparallel.py, lofreq2_indel_ovlp.py, lofreq2_somatic.py, lofreq2_vcfplot.py, run_dbghaplo_pipeline, write_contig_headers_vcf.py, annot-tsv, minimap2, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl |
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GITHUB
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quay.io/biocontainers/dbgraph |
shpc-registry automated BioContainers addition for dbgraph |
DBGraph2Pro, DBGraphPep2Pro |
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GITHUB
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quay.io/biocontainers/dca |
shpc-registry automated BioContainers addition for dca |
dca, dunamai, hyperopt-mongo-worker, zstdcat, scanpy, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, pt2to3, ptdump, ptrepack, pttree |
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GITHUB
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quay.io/biocontainers/dcc |
singularity registry hpc automated addition for dcc |
DCC, htseq-count-barcodes, htseq-count, htseq-qa, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/dcmtk |
shpc-registry automated BioContainers addition for dcmtk |
cda2dcm, dcm2json, dcm2pdf, dcm2pnm, dcm2xml, dcmcjpeg, dcmcjpls, dcmconv, dcmcrle, dcmdata_tests, dcmdjpeg, dcmdjpls, dcmdrle, dcmdspfn, dcmdump, dcmect_tests, dcmfg_tests, dcmftest, dcmgpdir, dcmicmp, dcmiod_tests, dcmj2pnm, dcml2pnm, dcmmkcrv, dcmmkdir, dcmmklut, dcmnet_tests, dcmodify, dcmp2pgm, dcmprscp, dcmprscu, dcmpschk, dcmpsmk, dcmpsprt, dcmpsrcv, dcmpssnd, dcmqridx, dcmqrscp, dcmqrti, dcmquant, dcmrecv, dcmrt_tests, dcmscale, dcmseg_tests, dcmsend, dcmsign, dcmsr_tests, dcmtls_tests, dcod2lum, dconvlum, drtdump, drttest, dsr2html, dsr2xml, dsrdump, dump2dcm, echoscu, findscu, getscu, img2dcm, mkreport, movescu, msgserv, ofstd_tests, pdf2dcm, stl2dcm, storescp, storescu, termscu, wlmscpfs, wltest, xml2dcm, xml2dsr, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set |
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GITHUB
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quay.io/biocontainers/dcplib |
shpc-registry automated BioContainers addition for dcplib |
jp.py, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py |
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GITHUB
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quay.io/biocontainers/ddipy |
shpc-registry automated BioContainers addition for ddipy |
omicsdi, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/ddocent |
shpc-registry automated BioContainers addition for ddocent |
ErrorCount.sh, RefMapOpt.sh, ReferenceOpt.sh, Rename_SequenceFiles.sh, dDocent, dDocent_filters, filter_hwe_by_pop.pl, filter_missing_ind.sh, mawk, pear, pearRM, pop_missing_filter.sh, rainbow, remake_reference.sh, remove.bad.hap.loci.sh, sam_add_rg.pl, select_all_rbcontig.pl, select_all_rbcontig.pl.bak, select_best_rbcontig.pl, select_best_rbcontig.pl.bak, select_best_rbcontig_plus_read1.pl, select_best_rbcontig_plus_read1.pl.bak, select_sec_rbcontig.pl, select_sec_rbcontig.pl.bak, split_ref_by_bai_datasize.py, update_version.sh, vcftools, fill-aa, fill-an-ac, fill-fs, fill-ref-md5, vcf-annotate, vcf-compare, vcf-concat, vcf-consensus, vcf-contrast, vcf-convert |
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GITHUB
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quay.io/biocontainers/ddrage |
shpc-registry automated BioContainers addition for ddrage |
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GITHUB
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quay.io/biocontainers/deap |
shpc-registry automated BioContainers addition for deap |
curve_keygen, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc |
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GITHUB
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quay.io/biocontainers/debarcer |
shpc-registry automated BioContainers addition for debarcer |
debarcer, pygal_gen.py, f2py3.7, img2webp, cwebp, dwebp, gif2webp, opj_compress, opj_decompress, opj_dump, 2to3-3.7, idle3.7 |
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GITHUB
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quay.io/biocontainers/deblur |
shpc-registry automated BioContainers addition for deblur |
deblur, indexdb_rna, sortmerna, biom, vsearch, doesitcache, ipython3, ipython, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi |
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GITHUB
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quay.io/biocontainers/debreak |
singularity registry hpc automated addition for debreak |
bsalign, complexsv.py, debreak, debreak_allpoa.py, debreak_detect.py, debreak_genotype.py, debreak_merge.py, debreak_merge_cluster.py, debreak_merge_contig.py, debreak_rescuedupfromins.py, debreak_rescuelargeins.py, debreak_resdup_selfalignment.py, debreak_writevcf.py, genefusion.py, wtdbg-cns, wtdbg2, wtpoa-cns, paftools.js, minimap2, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim, wgsim_eval.pl, samtools, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/debwt |
shpc-registry automated BioContainers addition for debwt |
deBWT |
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GITHUB
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quay.io/biocontainers/dechat |
singularity registry hpc automated addition for dechat |
dechat, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp, h5perf_serial, h5redeploy, h5repack, h5repart, h5stat, h5unjam, h5dump, h5cc |
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GITHUB
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quay.io/biocontainers/decifer |
shpc-registry automated BioContainers addition for decifer |
decifer, dimacs-solver, dimacs-to-lgf, fitbeta, generatestatetrees, lemon-0.x-to-1.x.sh, lgf-gen, mergestatetrees, cbc, clp, glpsol, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress |
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GITHUB
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quay.io/biocontainers/decom |
singularity registry hpc automated addition for decom |
cmtime, decOM, decOM-CV, decOM-LOO, decOM-MST, decOM-aOralOut, decOM-format, elastipubsub5, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, io_demo, kaleido, mathjax-path, mckey, mqtt5_app, mqtt5_canary, mqtt5canary, opj_decompress, protoc-23.4.0, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, scalar, ucmatose, ucx_info, ucx_perftest, ucx_read_profile, udaddy, udpong, dask, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, elasticurl, elasticurl_cpp, elastipubsub, csv-import, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, dask-scheduler, dask-ssh, dask-worker |
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GITHUB
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quay.io/biocontainers/decoupler |
singularity registry hpc automated addition for decoupler |
h5delete, aec, f2py3.11, numba, natsort, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tqdm, brotli, normalizer, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam |
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GITHUB
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quay.io/biocontainers/decoypyrat |
shpc-registry automated BioContainers addition for decoypyrat |
decoypyrat, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/dedup |
shpc-registry automated BioContainers addition for dedup |
dedup, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/deepac |
shpc-registry automated BioContainers addition for deepac |
deepac, theano-cache, theano-nose, freeze_graph, mako-render, tf_upgrade_v2, compile-et.pl, prerr.properties, tflite_convert, saved_model_cli, toco |
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GITHUB
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quay.io/biocontainers/deepaccess |
shpc-registry automated BioContainers addition for deepaccess |
deepaccess, import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2 |
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GITHUB
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quay.io/biocontainers/deepaclive |
shpc-registry automated BioContainers addition for deepaclive |
deepac, deepac-live, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng |
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GITHUB
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quay.io/biocontainers/deepacstrain |
shpc-registry automated BioContainers addition for deepacstrain |
deepac, deepac-strain, pyjwt, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng |
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GITHUB
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quay.io/biocontainers/deepacvir |
shpc-registry automated BioContainers addition for deepacvir |
deepac, deepac-vir, pyjwt, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng |
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GITHUB
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quay.io/biocontainers/deeparg |
shpc-registry automated BioContainers addition for deeparg |
deeparg, theano-test, theano-cache, theano-nose, ete3, diamond, tabulate, qhelpconverter, f2py2, f2py2.7, idn2, qwebengine_convert_dict |
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GITHUB
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quay.io/biocontainers/deepbgc |
shpc-registry automated BioContainers addition for deepbgc |
deepbgc, g-ir-doc-tool, theano-cache, theano-nose, freeze_graph, mako-render, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner |
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GITHUB
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quay.io/biocontainers/deepbinner |
shpc-registry automated BioContainers addition for deepbinner |
deepbinner, g-ir-doc-tool, theano-cache, theano-nose, freeze_graph, mako-render, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner |
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GITHUB
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quay.io/biocontainers/deepchopper-cli |
singularity registry hpc automated addition for deepchopper-cli |
deepchopper-chop, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/deepdirect |
singularity registry hpc automated addition for deepdirect |
deepdirect, flatc, h5fuse.sh, import_pb_to_tensorboard, h5delete, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, markdown_py, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, tjbench |
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GITHUB
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quay.io/biocontainers/deepfplearn |
singularity registry hpc automated addition for deepfplearn |
dfpl, shortuuid, wandb, wb, h5delete, import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, aec, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, markdown_py, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify |
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GITHUB
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quay.io/biocontainers/deeplc |
shpc-registry automated BioContainers addition for deeplc |
deeplc, deeplc-gui, import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2 |
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GITHUB
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quay.io/biocontainers/deeplcretrainer |
singularity registry hpc automated addition for deeplcretrainer |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
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quay.io/biocontainers/deeplift |
shpc-registry automated BioContainers addition for deeplift |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/deepmased |
shpc-registry automated BioContainers addition for deepmased |
DeepMAsED, theano-cache, theano-nose, estimator_ckpt_converter, mako-render, tf_upgrade_v2, iptest3, tflite_convert, saved_model_cli, toco, toco_from_protos |
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GITHUB
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quay.io/biocontainers/deepmedic |
shpc-registry automated BioContainers addition for deepmedic |
deepMedicRun, nib-dicomfs, nib-diff, nib-ls, nib-nifti-dx, nib-tck2trk, nib-trk2tck, parrec2nii, ppserver.py, unit2, theano-cache, theano-nose, mako-render, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7 |
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GITHUB
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quay.io/biocontainers/deepmei |
singularity registry hpc automated addition for deepmei |
bigRmskAlignBed.as, bigRmskBed.as, combineRMFiles.pl, deepmeiv1, makeclusterdb, maskFile.pl, renumberRMFiles.pl, rmToTrackHub.pl, RM2Bed.py, buildRMLibFromEMBL.pl, buildSummary.pl, wublastToCrossmatch.pl, DupMasker, ProcessRepeats, RepeatMasker, RepeatProteinMask, calcDivergenceFromAlign.pl, createRepeatLandscape.pl, dupliconToSVG.pl, getRepeatMaskerBatch.pl, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, trfMask, rmblastn, trf4.10.0-rc.2.linux64.exe, blast_report, blastdb_convert, blastdb_path, trf, metadata_conda_debug.yaml, import_pb_to_tensorboard, estimator_ckpt_converter |
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GITHUB
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quay.io/biocontainers/deepmicro |
singularity registry hpc automated addition for deepmicro |
DM.py, DNN_models.py, exception_handle.py, flatc, h5delete, import_pb_to_tensorboard, aec, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tensorboard, markdown_py, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, protoc |
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GITHUB
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quay.io/biocontainers/deepmod |
shpc-registry automated BioContainers addition for deepmod |
DeepMod.py, cal_EcoliDetPerf.py, generate_motif_pos.py, hm_cluster_predict.py, sum_chr_mod.py, freeze_graph, saved_model_cli, toco, toco_from_protos, tensorboard, markdown_py, sdust, paftools.js, minimap2, k8 |
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GITHUB
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quay.io/biocontainers/deepnog |
shpc-registry automated BioContainers addition for deepnog |
deepnog, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, tensorboard, markdown_py, protoc, tqdm, f2py3.7, 2to3-3.7, idle3.7 |
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GITHUB
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quay.io/biocontainers/deepsig |
shpc-registry automated BioContainers addition for deepsig |
deepsig, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, pyrsa-decrypt, pyrsa-encrypt |
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GITHUB
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quay.io/biocontainers/deepsignal-plant |
shpc-registry automated BioContainers addition for deepsignal-plant |
deepsignal_plant, torchrun, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, futurize, pasteurize, f2py3.9, h5clear, h5format_convert, h5watch, h5fc |
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GITHUB
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quay.io/biocontainers/deepstats |
shpc-registry automated BioContainers addition for deepstats |
dsCompareCurves, dsComputeBEDDensity, dsComputeGCCoverage, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run, iptest3, curve_keygen |
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GITHUB
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quay.io/biocontainers/deepsvr |
shpc-registry automated BioContainers addition for deepsvr |
bam-readcount, convert_zero_one_based, deepsvr, pbr, theano-cache, theano-nose, mako-render, perl5.22.0, tensorboard, c2ph, pstruct, qhelpconverter, protoc |
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GITHUB
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quay.io/biocontainers/deeptools |
shpc-registry automated BioContainers addition for deeptools |
alignmentSieve, bamCompare, bamCoverage, bamPEFragmentSize, bigwigCompare, computeGCBias, computeMatrix, computeMatrixOperations, correctGCBias, deeptools, estimateReadFiltering, estimateScaleFactor, multiBamSummary, multiBigwigSummary, plotCorrelation, plotCoverage, plotEnrichment, plotFingerprint, plotHeatmap, plotPCA, plotProfile, g-ir-doc-tool, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, jupyter-trust, jupyter, jupyter-migrate, jupyter-troubleshoot |
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GITHUB
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quay.io/biocontainers/deeptoolsintervals |
shpc-registry automated BioContainers addition for deeptoolsintervals |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
|
quay.io/biocontainers/deepvariant |
shpc-registry automated BioContainers addition for deepvariant |
bq, docker-credential-gcloud, dv_call_variants.py, dv_make_examples.py, dv_postprocess_variants.py, gcloud, gsutil, funzip, unzipsfx, zipgrep, zipinfo, freeze_graph, google-oauthlib-tool, unzip, clhsdb, hsdb |
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GITHUB
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quay.io/biocontainers/defense-finder |
singularity registry hpc automated addition for defense-finder |
defense-finder, macsyconfig, macsydata, macsyfinder, macsymerge, macsyprofile, macsysplit, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn, esl-seqrange, esl-seqstat, esl-sfetch, esl-shuffle, esl-ssdraw, esl-translate, esl-weight, esl-afetch, esl-reformat |
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GITHUB
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quay.io/biocontainers/defiant |
shpc-registry automated BioContainers addition for defiant |
defiant, roi |
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GITHUB
|
quay.io/biocontainers/degenotate |
singularity registry hpc automated addition for degenotate |
degenotate.py, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/dehomopolymerate |
shpc-registry automated BioContainers addition for dehomopolymerate |
dehomopolymerate |
|
GITHUB
|
quay.io/biocontainers/delegation |
shpc-registry automated BioContainers addition for delegation |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/delly |
shpc-registry automated BioContainers addition for delly |
delly, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/deltabs |
shpc-registry automated BioContainers addition for deltabs |
buildCustomModels.pl, deltaBS.pl, giffilter, gifsponge, gifecho, gifinto, gdlib-config, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml |
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GITHUB
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quay.io/biocontainers/deltamsi |
singularity registry hpc automated addition for deltamsi |
DeltaMSI, tqdm, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/deltapd |
shpc-registry automated BioContainers addition for deltapd |
attr, balsam, deltapd, esdcompat, getfattr, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, lprodump, lrelease-pro, lupdate-pro, meshdebug, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set |
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GITHUB
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quay.io/biocontainers/demultiplexer |
singularity registry hpc automated addition for demultiplexer |
demultiplexer, psghelp, psgissue, psgmain, psgsettings, psgupgrade, psgver, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/demuxem |
shpc-registry automated BioContainers addition for demuxem |
demuxEM, pegasusio, natsort, mirror_server, mirror_server_stop, fonttools, pyftmerge, pyftsubset, ttx, brotli, img2webp, cwebp |
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GITHUB
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quay.io/biocontainers/demuxlet |
shpc-registry automated BioContainers addition for demuxlet |
demuxlet, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats |
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GITHUB
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quay.io/biocontainers/dendropy |
shpc-registry automated BioContainers addition for dendropy |
dendropy-format, sumlabels.py, sumtrees.py, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/denovogear |
shpc-registry automated BioContainers addition for denovogear |
dng, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/deploid |
shpc-registry automated BioContainers addition for deploid |
dEploid, dEploid_dbg |
|
GITHUB
|
quay.io/biocontainers/derna |
singularity registry hpc automated addition for derna |
derna |
|
GITHUB
|
quay.io/biocontainers/desalt |
shpc-registry automated BioContainers addition for desalt |
Annotation_Load.py, deBGA, deSALT |
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GITHUB
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quay.io/biocontainers/desman |
shpc-registry automated BioContainers addition for desman |
AddLengths.pl, CalcDelta.py, CalcGeneCov.py, ClassifyContigNR.py, ClusterMeanCov.py, Collate.pl, CombineTau.pl, CompAssign.py, ExtractCogs.py, ExtractCountFreqGenes.py, ExtractCountFreqP.pl, ExtractGenes.py, Filter.pl, GeneAssign.py, GetVariants.py, GetVariantsCore.py, GetVariantsEta.py, LabelSMap.pl, LengthFilter.py, Lengths.py, MapCogBack.pl, MapGHeader.pl, NormGeneCounts.py, PlotDev.R, PlotLL.R, ReverseStrand.pl, Select.sh, SelectClusterCogs.pl, SelectContigsPos.pl, SelectGene.py, SplitClusters.pl, TauFasta.pl, Variant_Filter.py, contig_read_count_per_genome.py, desman, desmanflow.nf, extract_species_contigs.py, gene_read_count_per_genome.py, get_elite_range.py, pileups_to_freq_table.py, resolvenhap.py, runDesman.sh, taucomp.py, validateSNP.py, validateSNP2.py, validateSNP3.py, write_strain_fasta.py, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
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GITHUB
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quay.io/biocontainers/detonate |
shpc-registry automated BioContainers addition for detonate |
ref-eval, ref-eval-estimate-true-assembly, rsem-build-read-index, rsem-eval-calculate-score, rsem-eval-estimate-transcript-length-distribution, rsem-eval-run-em, rsem-extract-reference-transcripts, rsem-parse-alignments, rsem-plot-model, rsem-preref, rsem-sam-validator, rsem-scan-for-paired-end-reads, rsem-simulate-reads, rsem-synthesis-reference-transcripts, rsem_perl_utils.pm, varfilter.py, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, perl5.26.2, ace2sam |
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GITHUB
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quay.io/biocontainers/devider |
singularity registry hpc automated addition for devider |
devider, haplotag_bam, lofreq, lofreq2_call_pparallel.py, lofreq2_indel_ovlp.py, lofreq2_somatic.py, lofreq2_vcfplot.py, run_devider_pipeline, write_contig_headers_vcf.py, annot-tsv, sdust, paftools.js, k8, minimap2, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl |
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GITHUB
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quay.io/biocontainers/dextractor |
shpc-registry automated BioContainers addition for dextractor |
dex2DB, dexar, dexqv, dexta, dextract, undexar, undexqv, undexta, mirror_server, mirror_server_stop, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy |
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GITHUB
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quay.io/biocontainers/dfam |
shpc-registry automated BioContainers addition for dfam |
DateRepeats, DupMasker, ProcessRepeats, RM2Bed.py, RepeatMasker, RepeatProteinMask, buildRMLibFromEMBL.pl, buildSummary.pl, calcDivergenceFromAlign.pl, createRepeatLandscape.pl, dfamscan.pl, download-dfam.py, dupliconToSVG.pl, getRepeatMaskerBatch.pl, queryRepeatDatabase.pl, queryTaxonomyDatabase.pl, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, trfMask, wublastToCrossmatch.pl, rmblastn, trf4.10.0-rc.2.linux64.exe, trf, blast_report, blastdb_convert, blastdb_path, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv |
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GITHUB
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quay.io/biocontainers/dfast |
shpc-registry automated BioContainers addition for dfast |
dfast, dfast_file_downloader.py, file_downloader.py, ghostx, mga, blast_report, blastdb_convert, blastdb_path, aragorn, barrnap, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash |
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GITHUB
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quay.io/biocontainers/dfast_qc |
shpc-registry automated BioContainers addition for dfast_qc |
attr, balsam, checkm, dfast_qc, dqc_admin_tools.py, dqc_initial_setup.sh, esdcompat, getfattr, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, lprodump, lrelease-pro, lupdate-pro, meshdebug, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, pulseaudio, pwiz.py, qmlformat, qmltime, qmltyperegistrar, qpaeq, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set |
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GITHUB
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quay.io/biocontainers/dgenies |
shpc-registry automated BioContainers addition for dgenies |
dgenies, pbr, flask, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, markdown_py, fonttools |
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GITHUB
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quay.io/biocontainers/dia_umpire |
shpc-registry automated BioContainers addition for dia_umpire |
dia_umpire_quant, dia_umpire_se, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/dialign-tx |
shpc-registry automated BioContainers addition for dialign-tx |
dialign-tx |
|
GITHUB
|
quay.io/biocontainers/dialign2 |
shpc-registry automated BioContainers addition for dialign2 |
dialign2-2 |
|
GITHUB
|
quay.io/biocontainers/diamond |
shpc-registry automated BioContainers addition for diamond |
diamond |
|
GITHUB
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quay.io/biocontainers/diamond_add_taxonomy |
shpc-registry automated BioContainers addition for diamond_add_taxonomy |
|
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GITHUB
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quay.io/biocontainers/diapysef |
shpc-registry automated BioContainers addition for diapysef |
annotate_mq_ionmobility.py, convertTDFtoMzML.py, create_library.py, get_dia_windows.py, high_precision_irt.py, plot_dia_windows.py, svm-predict, svm-scale, svm-train, CreateDOMDocument, DOMCount, DOMPrint, EnumVal, MemParse, PParse, PSVIWriter |
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GITHUB
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quay.io/biocontainers/dicey |
shpc-registry automated BioContainers addition for dicey |
dicey, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/diego |
shpc-registry automated BioContainers addition for diego |
HTseq2DIEGO.pl, diego.py, gfftoDIEGObed.pl, pre_STAR.py, pre_segemehl.pl, pre_std.py, pre_tophat.pl, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed |
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GITHUB
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quay.io/biocontainers/difcover |
singularity registry hpc automated addition for difcover |
convert_exp_to_dec_in_unionbed.sh, from_DNAcopyout_to_p_fragments.sh, from_bams_to_unionbed.sh, from_ratio_per_window__to__DNAcopy_output.sh, from_unionbed_to_ratio_per_window_CC0, generate_DNAcopyout_len_histogram.sh, generate_DNAcopyout_len_vs_scores_histogram_bin0.5.sh, get_DNAcopyout_with_length_of_intervals.sh, run_DNAcopy_from_bash.R, run_difcover.sh, annot-tsv, shiftBed, hb-info, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap, groupBy, intersectBed, linksBed, mapBed, maskFastaFromBed |
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GITHUB
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quay.io/biocontainers/diffacto |
shpc-registry automated BioContainers addition for diffacto |
diffacto, xslt-config, xsltproc, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9 |
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GITHUB
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quay.io/biocontainers/dig2 |
shpc-registry automated BioContainers addition for dig2 |
dig2 |
|
GITHUB
|
quay.io/biocontainers/digestiflow-cli |
shpc-registry automated BioContainers addition for digestiflow-cli |
digestiflow-cli |
|
GITHUB
|
quay.io/biocontainers/digestiflow-demux |
shpc-registry automated BioContainers addition for digestiflow-demux |
digestiflow-demux, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, coloredlogs, humanfriendly, snakemake |
|
GITHUB
|
quay.io/biocontainers/dimet |
singularity registry hpc automated addition for dimet |
dotenv, pygrun, coverage, f2py3.11, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc, python3.1 |
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GITHUB
|
quay.io/biocontainers/dimspy |
shpc-registry automated BioContainers addition for dimspy |
csc, csc-dim, csi, dimspy, illinkanalyzer, monograph, nunit-console, nunit-console2, nunit-console4, vbc, mono-package-runtime, sgen-grep-binprot, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr |
|
GITHUB
|
quay.io/biocontainers/dinamo |
shpc-registry automated BioContainers addition for dinamo |
dinamo |
|
GITHUB
|
quay.io/biocontainers/dinf |
singularity registry hpc automated addition for dinf |
demes, demesdraw, dinf, dinf-plot, msp, mspms, tskit, cyvcf2, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, cmark, get_objgraph, undill, coloredlogs, humanfriendly, jsonschema, protoc, pygmentize, fonttools, pyftmerge, pyftsubset, ttx, brotli, futurize, pasteurize, f2py3.10, img2webp |
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GITHUB
|
quay.io/biocontainers/dingii |
singularity registry hpc automated addition for dingii |
dingII, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
|
quay.io/biocontainers/dinopy |
shpc-registry automated BioContainers addition for dinopy |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/dinosaur |
shpc-registry automated BioContainers addition for dinosaur |
dinosaur, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/dipcall |
shpc-registry automated BioContainers addition for dipcall |
bedtk, dipcall-aux.js, htsbox, meryl-analyze, meryl-check, meryl-import, meryl-lookup, meryl-simple, run-dipcall, unimap, winnowmap, meryl, perl5.32.0, sdust, paftools.js, minimap2, k8, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl |
|
GITHUB
|
quay.io/biocontainers/diphase |
singularity registry hpc automated addition for diphase |
eval.py, phasing, pipeline.py, plot.py, preprocessing.py, tools.py, util.py, qualfa2fq.pl, xa2multi.pl, bwa, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim, wgsim_eval.pl, samtools |
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GITHUB
|
quay.io/biocontainers/dirseq |
singularity registry hpc automated addition for dirseq |
bioruby, br_biofetch.rb, br_bioflat.rb, br_biogetseq.rb, br_pmfetch.rb, dirseq, varfilter.py, erb, gem, irb, rake, rdoc, ri, ruby, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap |
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GITHUB
|
quay.io/biocontainers/discasm |
shpc-registry automated BioContainers addition for discasm |
DISCASM, PtR, Trinity, TrinityStats.pl, Trinity_gene_splice_modeler.py, abundance_estimates_to_matrix.pl, align_and_estimate_abundance.pl, analyze_blastPlus_topHit_coverage.pl, analyze_diff_expr.pl, contig_ExN50_statistic.pl, define_clusters_by_cutting_tree.pl, extract_supertranscript_from_reference.py, filter_low_expr_transcripts.pl, get_Trinity_gene_to_trans_map.pl, insilico_read_normalization.pl, oases, oases_pipeline.py, retrieve_sequences_from_fasta.pl, run_DE_analysis.pl, run_DE_analysis_from_samples_file.pl, seqtk-trinity, sift_bam_max_cov.pl, salmon, STAR, STARlong, velvetg, velveth, giffilter, gifsponge, bowtie-align-l, bowtie-align-s, bowtie-build-l |
|
GITHUB
|
quay.io/biocontainers/disco |
shpc-registry automated BioContainers addition for disco |
buildG, buildG-MPI, buildG-MPIRMA, disco.cfg, disco_2.cfg, disco_3.cfg, fido2-assert, fido2-cred, fido2-token, fullsimplify, parsimplify, runAssembly-MPI.sh, runAssembly.sh, runDisco-MPI-ALPS.sh, runDisco-MPI-AllineaMAP.sh, runDisco-MPI-SLURM.sh, runDisco-MPI.sh, runDisco.sh, runECC.sh, scp, sftp, ssh, ssh-add, ssh-agent, ssh-keygen, ssh-keyscan, sshd, kmutate.sh, runhmm.sh, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, sketchblacklist2.sh |
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GITHUB
|
quay.io/biocontainers/discosnp |
shpc-registry automated BioContainers addition for discosnp |
SRC_counter, SRC_linker_ram, dbgh5, dsk, dsk2ascii, extract_reads_from_bv, generate_bv, kissnp2, kissreads2, quick_hierarchical_clustering, read_file_names, run_discoSnp++.sh, run_discoSnp++_ML.sh, run_discoSnpRad.sh, short_read_connector.sh, qualfa2fq.pl, xa2multi.pl, bwa, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config, h5cc |
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GITHUB
|
quay.io/biocontainers/dist_est |
singularity registry hpc automated addition for dist_est |
dist_est |
|
GITHUB
|
quay.io/biocontainers/distle |
singularity registry hpc automated addition for distle |
distle |
|
GITHUB
|
quay.io/biocontainers/disty |
shpc-registry automated BioContainers addition for disty |
disty |
|
GITHUB
|
quay.io/biocontainers/ditasic |
shpc-registry automated BioContainers addition for ditasic |
ditasic, ditasic_mapping.py, ditasic_matrix.py, kallisto, mason_frag_sequencing, mason_genome, mason_materializer, mason_methylation, mason_simulator, mason_splicing, mason_variator, f2py3.9, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug |
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GITHUB
|
quay.io/biocontainers/divvier |
shpc-registry automated BioContainers addition for divvier |
divvier |
|
GITHUB
|
quay.io/biocontainers/dkfz-bias-filter |
shpc-registry automated BioContainers addition for dkfz-bias-filter |
dkfzbiasfilter.py, dkfzbiasfilter_summarize.py, qhelpconverter, f2py2, f2py2.7, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner, repc |
|
GITHUB
|
quay.io/biocontainers/dlcpar |
shpc-registry automated BioContainers addition for dlcpar |
dlcoal_to_dlcpar, dlcpar, dlcpar_search, dlcpar_to_dlcoal, tree-events-dlc, tree-events-dlcpar, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/dligand2 |
shpc-registry automated BioContainers addition for dligand2 |
dligand2 |
|
GITHUB
|
quay.io/biocontainers/dmbiolib |
singularity registry hpc automated addition for dmbiolib |
f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/dms |
shpc-registry automated BioContainers addition for dms |
MS-comp-taxa, MS-comp-taxa-dynamic, MS-make-ref, MS-single-to-table, MS-table-to-single |
|
GITHUB
|
quay.io/biocontainers/dmtools |
singularity registry hpc automated addition for dmtools |
bam2dm, dmDMR, dmalign, dmtools, genome2cg, genomebinLen, annot-tsv, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/dna-nn |
singularity registry hpc automated addition for dna-nn |
dna-brnn, dna-cnn, gen-fq, parse-rm.js, k8 |
|
GITHUB
|
quay.io/biocontainers/dna_features_viewer |
shpc-registry automated BioContainers addition for dna_features_viewer |
fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp |
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GITHUB
|
quay.io/biocontainers/dnaapler |
singularity registry hpc automated addition for dnaapler |
dnaapler, pyrodigal, test_pcre, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl, sort-table, spdi2tbl, split-at-intron, tbl2xml, transmute.Linux |
|
GITHUB
|
quay.io/biocontainers/dnabot |
shpc-registry automated BioContainers addition for dnabot |
miniterm.py, jsonschema, f2py3.8, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/dnacauldron |
singularity registry hpc automated addition for dnacauldron |
dnacauldron, html2text, runxlrd.py, fonttools, pyftmerge, pyftsubset, ttx, tqdm, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, gif2rgb, gifbuild, gifclrmp, giffix |
|
GITHUB
|
quay.io/biocontainers/dnachisel |
shpc-registry automated BioContainers addition for dnachisel |
dnachisel, tqdm, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/dnaio |
shpc-registry automated BioContainers addition for dnaio |
igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, 2to3-3.9, idle3.9, pydoc3.9, python3.9 |
|
GITHUB
|
quay.io/biocontainers/dnamarkmaker |
singularity registry hpc automated addition for dnamarkmaker |
DNAMarkMaker, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim |
|
GITHUB
|
quay.io/biocontainers/dnapi |
shpc-registry automated BioContainers addition for dnapi |
dnapi.py, qual_offset.py, qual_trim.py, to_fasta.py, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/dnarrange |
shpc-registry automated BioContainers addition for dnarrange |
dnarrange, dnarrange-genes, dnarrange-link, dnarrange-merge, fasta-nr, fastq-interleave, lamassemble, last-dotplot, last-map-probs, last-merge-batches, last-multiplot, last-pair-probs, last-postmask, last-split, last-split5, last-train, lastal, lastal5, lastdb, lastdb5, maf-convert, maf-cut, maf-join, maf-sort, maf-swap, parallel-fasta, parallel-fastq, parsort, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns |
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GITHUB
|
quay.io/biocontainers/dnaweaver |
shpc-registry automated BioContainers addition for dnaweaver |
dnachisel, weasyprint, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides |
|
GITHUB
|
quay.io/biocontainers/dnaweaver_synbiocad |
shpc-registry automated BioContainers addition for dnaweaver_synbiocad |
dnachisel, weasyprint, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod |
|
GITHUB
|
quay.io/biocontainers/dnmtools |
singularity registry hpc automated addition for dnmtools |
dnmtools, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/dnoise |
singularity registry hpc automated addition for dnoise |
dnoise, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tqdm, python3.1 |
|
GITHUB
|
quay.io/biocontainers/dnp-binstrings |
shpc-registry automated BioContainers addition for dnp-binstrings |
dnp-binstrings |
|
GITHUB
|
quay.io/biocontainers/dnp-corrprofile |
shpc-registry automated BioContainers addition for dnp-corrprofile |
dnp-corrprofile |
|
GITHUB
|
quay.io/biocontainers/dnp-diprofile |
shpc-registry automated BioContainers addition for dnp-diprofile |
dnp-diprofile |
|
GITHUB
|
quay.io/biocontainers/dnp-fourier |
shpc-registry automated BioContainers addition for dnp-fourier |
dnp-fourier |
|
GITHUB
|
quay.io/biocontainers/dnp-mapping |
shpc-registry automated BioContainers addition for dnp-mapping |
dnp-mapping |
|
GITHUB
|
quay.io/biocontainers/docking_py |
shpc-registry automated BioContainers addition for docking_py |
adt, archosv, cadd, docking_py, mglenv.csh, mglenv.sh, pdb2pqr_cli, pmv, prepare_ligand4.py, prepare_receptor4.py, python2.5, python2.5-config, pythonsh, qvina2, qvina2_split, qvinaw, qvinaw_split, smina, tester, vina, vina_split, vision, pilconvert.py, pildriver.py, pilfile.py, pilfont.py, pilprint.py, f2py3.8, idle, python-config, smtpd.py, 2to3-3.8 |
|
GITHUB
|
quay.io/biocontainers/dockq |
singularity registry hpc automated addition for dockq |
DockQ, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tqdm |
|
GITHUB
|
quay.io/biocontainers/dodge |
singularity registry hpc automated addition for dodge |
dodge, dodgedists, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/doebase |
shpc-registry automated BioContainers addition for doebase |
|
|
GITHUB
|
quay.io/biocontainers/doit |
shpc-registry automated BioContainers addition for doit |
doit, smtpd.pyc, easy_install-2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5 |
|
GITHUB
|
quay.io/biocontainers/domclust |
shpc-registry automated BioContainers addition for domclust |
addtit.pl, blast2homfile.pl, cmpr.pl, convgraph.pl, domclust, fasta2genefile.pl, perl5.22.2, c2ph, pstruct, podselect |
|
GITHUB
|
quay.io/biocontainers/dominate |
shpc-registry automated BioContainers addition for dominate |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/domino |
shpc-registry automated BioContainers addition for domino |
community, domino, pybind11-config, slicer, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/dosage_score |
singularity registry hpc automated addition for dosage_score |
dosage_score, dosage_score_plot, annot-tsv, fasta-sanitize.pl, plot-ampliconstats, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl |
|
GITHUB
|
quay.io/biocontainers/doubletd |
shpc-registry automated BioContainers addition for doubletd |
doubletd, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/doubletdetection |
singularity registry hpc automated addition for doubletdetection |
qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, igraph, h5tools_test_utils, scanpy, numpy-config, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics |
|
GITHUB
|
quay.io/biocontainers/downpore |
shpc-registry automated BioContainers addition for downpore |
downpore |
|
GITHUB
|
quay.io/biocontainers/dr-disco |
shpc-registry automated BioContainers addition for dr-disco |
chimerascan-exclude-transcriptome-events, chimerascan-relative-bedpe-to-CG, defuse-clusters-to-CG, dr-disco, fuma, fuma-gencode-gtf-to-bed, fuma-list-to-boolean-list, fusioncatcher-to-CG, htseq-count, htseq-qa, easy_install-2.7, qhelpconverter, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools |
|
GITHUB
|
quay.io/biocontainers/dragmap |
shpc-registry automated BioContainers addition for dragmap |
dragen-os, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/dragonflye |
shpc-registry automated BioContainers addition for dragonflye |
assembly-scan, check_compression, compress_fast5, demux_fast5, dragonflye, fast5_subset, flye, flye-minimap2, flye-modules, flye-samtools, hdf2tf.py, medaka, medaka_consensus, medaka_counts, medaka_data_path, medaka_haploid_variant, medaka_version_report, mini_align, miniasm, minidot, multi_to_single_fast5, nanoq, porechop, rasusa, raven, single_to_multi_fast5, whatshap, fastp, pilon, minimap2.py, samclip, any2fasta, kmc, kmc_dump, kmc_tools, racon, rampler |
|
GITHUB
|
quay.io/biocontainers/dram |
shpc-registry automated BioContainers addition for dram |
DRAM-setup.py, DRAM-v.py, DRAM.py, EukHighConfidenceFilter, covels-SE, coves-SE, eufindtRNA, fasta2gsi, sstofa, tRNAscan-SE, tRNAscan-SE.conf, trnascan-1.4, jemalloc-config, jeprof, jemalloc.sh, erb, gem, irb, rake, rdoc, ri, ruby |
|
GITHUB
|
quay.io/biocontainers/drax |
shpc-registry automated BioContainers addition for drax |
addTaxonNames, bbmergegapped.sh, bbqc.sh, convertNR, convert_mar_to_kaiju.py, drax, gbk2faa.pl, groot, kaiju, kaiju2krona, kaijuReport, kaijup, kaijux, makeDB.sh, mergeOutputs, metacherchant.sh, mkbwt, mkfmi, nextflow, normandcorrectwrapper.sh, taxonlist.tsv, multiqc, fastp, ktClassifyBLAST, ktGetContigMagnitudes, ktGetLCA, ktGetLibPath, ktGetTaxIDFromAcc, ktGetTaxInfo, ktImportBLAST, ktImportDiskUsage |
|
GITHUB
|
quay.io/biocontainers/dreamtools |
shpc-registry automated BioContainers addition for dreamtools |
dreamtools, dreamtools-layout, dreamtools-scoring, synapse, easydev_buildPackage, ibrowse, multigit, browse, runxlrd.py, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel |
|
GITHUB
|
quay.io/biocontainers/drep |
shpc-registry automated BioContainers addition for drep |
ScaffoldLevel_dRep.py, dRep, delta2vcf, parse_stb.py, fastANI, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, combineMUMs, delta-filter, dnadiff, exact-tandems |
|
GITHUB
|
quay.io/biocontainers/drive |
shpc-registry automated BioContainers addition for drive |
drive |
|
GITHUB
|
quay.io/biocontainers/drop |
shpc-registry automated BioContainers addition for drop |
drop, git2_cli, wbuild, gatk, STAR, STARlong, plac_runner.py, yte, bc, dc, docutils, pulptest, gff2gff.py |
|
GITHUB
|
quay.io/biocontainers/dropbox |
shpc-registry automated BioContainers addition for dropbox |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/dropest |
shpc-registry automated BioContainers addition for dropest |
dropReport.Rsc, dropest, droptag, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/dropkick |
singularity registry hpc automated addition for dropkick |
SvtAv1DecApp, SvtAv1EncApp, dav1d, dropkick, h5tools_test_utils, rav1e, tiff2fsspec, aomdec, aomenc, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, imageio_download_bin, imageio_remove_bin, skivi, h5fuse.sh, scanpy, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff |
|
GITHUB
|
quay.io/biocontainers/dropletutils-scripts |
shpc-registry automated BioContainers addition for dropletutils-scripts |
dropletutils-barcoderanks.R, dropletutils-downsample-matrix.R, dropletutils-empty-drops.R, dropletutils-make-test-sdrf.R, dropletutils-read-10x-counts.R, dropletutils-scripts-post-install-tests.bats, dropletutils-scripts-post-install-tests.sh, build_env_setup.sh, conda_build.sh, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/dropseq_tools |
shpc-registry automated BioContainers addition for dropseq_tools |
BamTagHistogram, BamTagOfTagCounts, BaseDistributionAtReadPosition, CensusSeq, CollapseBarcodesInPlace, CollapseTagWithContext, CompareDropSeqAlignments, ConvertToRefFlat, CountUnmatchedSampleIndices, CreateIntervalsFiles, CsiAnalysis, DetectBeadSubstitutionErrors, DetectBeadSynthesisErrors, DigitalExpression, FilterBam, FilterBamByTag, FilterGtf, GatherGeneGCLength, GatherMolecularBarcodeDistributionByGene, GatherReadQualityMetrics, MaskReferenceSequence, MergeDgeSparse, PolyATrimmer, ReduceGtf, RollCall, SelectCellsByNumTranscripts, SingleCellRnaSeqMetricsCollector, SplitBamByCell, TagBamWithReadSequenceExtended, TagReadWithGeneExonFunction, TagReadWithGeneFunction, TagReadWithInterval, TrimStartingSequence, ValidateReference, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
|
quay.io/biocontainers/drprg |
singularity registry hpc automated addition for drprg |
drprg, make_prg, pandora, gff2gff.py, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns, mafft-fftnsi, mafft-ginsi, mafft-homologs.rb, mafft-linsi, mafft-nwns, mafft-nwnsi, mafft-profile, mafft-qinsi, mafft-xinsi, nwns, nwnsi, mafft, guess-ploidy.py, plot-roh.py, run-roh.pl |
|
GITHUB
|
quay.io/biocontainers/drtransformer |
singularity registry hpc automated addition for drtransformer |
DrPlotter, DrTransformer, RNAmultifold, flit, RNAdos, docutils, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex, RNAsnoop, RNAfold, Kinfold, RNALfold, RNAaliduplex, RNAalifold, RNAcofold, RNAdistance, RNAduplex, RNAeval |
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GITHUB
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quay.io/biocontainers/dscr |
shpc-registry automated BioContainers addition for dscr |
dsrc, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/dsh-bio |
shpc-registry automated BioContainers addition for dsh-bio |
dsh-bio, dsh-compress-bed, dsh-compress-fasta, dsh-compress-fastq, dsh-compress-gaf, dsh-compress-gfa1, dsh-compress-gfa2, dsh-compress-gff3, dsh-compress-paf, dsh-compress-rgfa, dsh-compress-sam, dsh-compress-vcf, dsh-create-sequence-dictionary, dsh-disinterleave-fastq, dsh-downsample-fastq, dsh-downsample-interleaved-fastq, dsh-export-segments, dsh-extract-fastq, dsh-extract-fastq-by-length, dsh-fasta-to-fastq, dsh-fastq-description, dsh-fastq-sequence-length, dsh-fastq-to-bam, dsh-fastq-to-fasta, dsh-fastq-to-text, dsh-filter-bed, dsh-filter-fasta, dsh-filter-fastq, dsh-filter-gaf, dsh-filter-gfa1, dsh-filter-gfa2, dsh-filter-gff3, dsh-filter-paf, dsh-filter-rgfa, dsh-filter-sam, dsh-filter-vcf, dsh-gfa1-to-gfa2, dsh-identify-gfa1, dsh-interleave-fastq, dsh-interleaved-fastq-to-bam, dsh-links-to-cytoscape-edges, dsh-links-to-property-graph, dsh-list-filesystems, dsh-reassemble-paths, dsh-remap-dbsnp, dsh-remap-phase-set, dsh-rename-bed-references, dsh-rename-gff3-references, dsh-rename-vcf-references, dsh-segments-to-cytoscape-nodes, dsh-segments-to-property-graph, dsh-split-bed, dsh-split-fasta, dsh-split-fastq, dsh-split-gaf, dsh-split-gff3, dsh-split-interleaved-fastq, dsh-split-paf, dsh-split-sam, dsh-split-vcf, dsh-text-to-fastq, dsh-traversals-to-cytoscape-edges, dsh-traversals-to-property-graph, dsh-traverse-paths, dsh-truncate-fasta, dsh-truncate-paths, dsh-variant-table-to-vcf, dsh-vcf-header, dsh-vcf-pedigree, dsh-vcf-samples, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink |
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GITHUB
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quay.io/biocontainers/dsk |
shpc-registry automated BioContainers addition for dsk |
dsk, dsk2ascii, h5cc |
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GITHUB
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quay.io/biocontainers/dsrc |
shpc-registry automated BioContainers addition for dsrc |
dsrc |
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GITHUB
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quay.io/biocontainers/dudes |
shpc-registry automated BioContainers addition for dudes |
DUDes.py, DUDesDB.py, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/duet |
shpc-registry automated BioContainers addition for duet |
clair3.py, cuteSV, duet, libclair3.c, libclair3.o, longphase, ngmlr, pypy, pypy3, pypy3.6, run_clair3.sh, svim, whatshap, gdbm_dump, gdbm_load, gdbmtool, estimator_ckpt_converter, google-oauthlib-tool, igzip, tf_upgrade_v2, pbunzip2, pbzcat, pbzip2 |
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GITHUB
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quay.io/biocontainers/dunovo |
shpc-registry automated BioContainers addition for dunovo |
align-families.py, baralign.sh, bash, bashbug, consensus.py, correct.py, dunovo.py, dunovo_parsers.py, file, gunzip, gzexe, gzip, loeb-2.0.sh, make-barcodes.awk, make-consensi.py, make-families.sh, parallel_tools.py, precheck.py, safety-not-guaranteed.py, seqtools.py, shims.py, trimmer.py, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zless, zmore, znew, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect, gawk-5.1.0 |
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GITHUB
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quay.io/biocontainers/duphold |
shpc-registry automated BioContainers addition for duphold |
duphold, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/duplex-tools |
singularity registry hpc automated addition for duplex-tools |
duplex_tools, pyfastx, natsort, tqdm, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/duplomap |
shpc-registry automated BioContainers addition for duplomap |
duplomap, duplomap-prepare, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa |
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GITHUB
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quay.io/biocontainers/dupre |
shpc-registry automated BioContainers addition for dupre |
bam2occupancy, dupre, pulpdoctest, pulptest, f2py3.6, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, 2to3-3.6 |
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GITHUB
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quay.io/biocontainers/dupsifter |
singularity registry hpc automated addition for dupsifter |
dupsifter |
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GITHUB
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quay.io/biocontainers/dvorfs |
shpc-registry automated BioContainers addition for dvorfs |
dba, dnal, dvorfs, estwise, estwisedb, genewise, genewisedb, hmmalign2, hmmbuild2, hmmcalibrate2, hmmconvert2, hmmemit2, hmmfetch2, hmmindex2, hmmpfam2, hmmsearch2, process-genewise, promoterwise, psw, pswdb, scanwise, scanwise_server, _bdftogd, _gd2copypal, _gd2togif, _gd2topng, _gdcmpgif, _gdparttopng, _gdtopng, _giftogd2, _pngtogd, _pngtogd2 |
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GITHUB
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quay.io/biocontainers/dwgsim |
shpc-registry automated BioContainers addition for dwgsim |
dwgsim, dwgsim_eval |
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GITHUB
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quay.io/biocontainers/dx-cwl |
shpc-registry automated BioContainers addition for dx-cwl |
bagit.py, dx, dx-app-wizard, dx-build-app, dx-build-applet, dx-clone-asset, dx-cwl, dx-docker, dx-download-all-inputs, dx-fetch-bundled-depends, dx-generate-dxapp, dx-jobutil-add-output, dx-jobutil-dxlink, dx-jobutil-new-job, dx-jobutil-parse-link, dx-jobutil-report-error, dx-log-stream, dx-mount-all-inputs, dx-notebook-reconnect, dx-print-bash-vars, dx-upload-all-outputs, prov-compare, prov-convert, wsdump.py, xattr, cwltool, schema-salad-doc, schema-salad-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, doesitcache, activate-global-python-argcomplete |
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GITHUB
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quay.io/biocontainers/dxpy |
shpc-registry automated BioContainers addition for dxpy |
dx, dx-app-wizard, dx-build-app, dx-build-applet, dx-clone-asset, dx-docker, dx-download-all-inputs, dx-fetch-bundled-depends, dx-generate-dxapp, dx-jobutil-add-output, dx-jobutil-dxlink, dx-jobutil-new-job, dx-jobutil-parse-link, dx-jobutil-report-error, dx-log-stream, dx-mount-all-inputs, dx-notebook-reconnect, dx-print-bash-vars, dx-upload-all-outputs, wsdump, xattr, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/dxua |
shpc-registry automated BioContainers addition for dxua |
dxua |
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GITHUB
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quay.io/biocontainers/dysgu |
singularity registry hpc automated addition for dysgu |
dysgu, cygdb, cython, cythonize, normalizer, f2py3.10, htsfile, bgzip, tabix, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/e-pcr |
shpc-registry automated BioContainers addition for e-pcr |
e-PCR, fahash, famap, re-PCR |
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GITHUB
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quay.io/biocontainers/ea-utils |
shpc-registry automated BioContainers addition for ea-utils |
alc, determine-phred, fastq-clipper, fastq-join, fastq-mcf, fastq-multx, fastq-stats, fastx-graph, randomFQ, sam-stats, varcall |
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GITHUB
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quay.io/biocontainers/eagle |
shpc-registry automated BioContainers addition for eagle |
eagle, sqt, cyvcf2, cutadapt, flask, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py |
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GITHUB
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quay.io/biocontainers/eagle2 |
singularity registry hpc automated addition for eagle2 |
eagle, annot-tsv, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/earlgrey |
singularity registry hpc automated addition for earlgrey |
BuildDatabase, LAI, LTRPipeline, LTR_retriever, LTR_retriever.py, Linup, Ninja, RM2Bed.py, Refiner, RepeatClassifier, RepeatMasker.py, RepeatModeler, RepeatScout, TEsorter, TEsorter-test, alignAndCallConsensus.pl, bigRmskAlignBed.as, bigRmskBed.as, buildRMLibFromEMBL.pl, buildSummary.pl, build_lmer_table, combineRMFiles.pl, compare-out-to-gff.prl, concatenate_domains.py, convert_MGEScan3.0.pl, convert_ltr_struc.pl, convert_ltrdetector.pl, earlGrey, edgeredef, eledef, eleredef, famdef, filter-stage-1.prl, filter-stage-2.prl, generateSeedAlignments.pl, genometools-config, get_record.py, gt, imagespread, makeclusterdb, maskFile.pl, merge-lmer-tables.prl, mreps, nmerge, nseg, ppserver.py, renumberRMFiles.pl, rmToTrackHub.pl, sa-ssr, viewMSA.pl, wublastToCrossmatch.pl, DupMasker, ProcessRepeats, RepeatMasker, RepeatProteinMask, calcDivergenceFromAlign.pl, createRepeatLandscape.pl, dupliconToSVG.pl, getRepeatMaskerBatch.pl, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, trfMask, rmblastn, blastn_vdb, tblastn_vdb, blast_report, blastdb_convert, blastdb_path, trf4.10.0-rc.2.linux64.exe, trf, twoBitToFa, twoBitInfo, faToTwoBit, FET.pl, cd-hit-clstr_2_blm8.pl |
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GITHUB
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quay.io/biocontainers/easel |
shpc-registry automated BioContainers addition for easel |
easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct |
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GITHUB
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quay.io/biocontainers/easydev |
shpc-registry automated BioContainers addition for easydev |
easydev_buildPackage, ibrowse, multigit, browse, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m |
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GITHUB
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quay.io/biocontainers/easypqp |
shpc-registry automated BioContainers addition for easypqp |
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GITHUB
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quay.io/biocontainers/ebcsgen |
shpc-registry automated BioContainers addition for ebcsgen |
isympy, x86_64-conda_cos7-linux-gnu-ld, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/ebfilter |
shpc-registry automated BioContainers addition for ebfilter |
EBFilter, vcf_sample_filter.py, vcf_filter.py, vcf_melt, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
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GITHUB
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quay.io/biocontainers/ebi-eva-common-pyutils |
singularity registry hpc automated addition for ebi-eva-common-pyutils |
archive_directory.py, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, xslt-config, xsltproc, normalizer |
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GITHUB
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quay.io/biocontainers/ebisearch |
shpc-registry automated BioContainers addition for ebisearch |
ebi_metagenomics, ebisearch, flake8, pycodestyle, pyflakes, chardetect, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/ecmwfapi |
shpc-registry automated BioContainers addition for ecmwfapi |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/ecopcr |
shpc-registry automated BioContainers addition for ecopcr |
ecoPCR, ecoPCRFilter.py, ecoPCRFormat.py, ecoSort.py, ecofind, ecogrep, createfontdatachunk.py, enhancer.py, explode.py, gifmaker.py, painter.py, player.py, thresholder.py, viewer.py, pilconvert.py, pildriver.py |
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GITHUB
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quay.io/biocontainers/ecoprimers |
shpc-registry automated BioContainers addition for ecoprimers |
ecoPrimers |
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GITHUB
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quay.io/biocontainers/ecopy |
shpc-registry automated BioContainers addition for ecopy |
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GITHUB
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quay.io/biocontainers/ectyper |
shpc-registry automated BioContainers addition for ectyper |
ectyper, capnp, capnpc, capnpc-c++, capnpc-capnp, gff2gff.py, mash, seqtk, CA.pm, cacert.pem, index-themes |
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GITHUB
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quay.io/biocontainers/edd |
shpc-registry automated BioContainers addition for edd |
edd, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, gff2gff.py, guess-ploidy.py |
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GITHUB
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quay.io/biocontainers/eden |
shpc-registry automated BioContainers addition for eden |
RNAshapes, dsdp5, location_predictor, model, motif, motif_display.py, obfitall, obmm, transformseq, weblogo, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize |
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GITHUB
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quay.io/biocontainers/edena |
shpc-registry automated BioContainers addition for edena |
edena |
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GITHUB
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quay.io/biocontainers/editdistance |
shpc-registry automated BioContainers addition for editdistance |
2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5, wish8.5 |
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GITHUB
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quay.io/biocontainers/edittag |
shpc-registry automated BioContainers addition for edittag |
add_tags_to_adapters.py, add_tags_to_primers.py, design_edit_metric_tags.py, estimate_sequencing_error_effects.py, get_tag_flows_for_454.py, validate_edit_metric_tags.py, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/edlib |
shpc-registry automated BioContainers addition for edlib |
edlib-aligner |
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GITHUB
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quay.io/biocontainers/edta |
shpc-registry automated BioContainers addition for edta |
BuildDatabase, DateRepeats, DupMasker, EDTA.pl, EDTA_processI.pl, EDTA_raw.pl, LAI, LTRPipeline, LTR_retriever, LTR_retriever.py, Linup, Ninja, ProcessRepeats, RM2Bed.py, Refiner, RepeatClassifier, RepeatMasker, RepeatMasker.py, RepeatModeler, RepeatProteinMask, RepeatScout, TEsorter, TEsorter-test, alignAndCallConsensus.pl, buildRMLibFromEMBL.pl, buildSummary.pl, build_lmer_table, calcDivergenceFromAlign.pl, check_result.pl, compare-out-to-gff.prl, concatenate_domains.py, convert_MGEScan3.0.pl, convert_ltr_struc.pl, convert_ltrdetector.pl, createRepeatLandscape.pl, down_tRNA.pl, dupliconToSVG.pl, edgeredef, eledef, eleredef, famdef, filter-stage-1.prl, filter-stage-2.prl, filter_rt.pl, generateSeedAlignments.pl, genome_plot.pl, genome_plot2.pl, genome_plot_svg.pl, genometools-config, getRepeatMaskerBatch.pl, get_record.py, grf-alignment, grf-alignment2, grf-dbn, grf-filter, grf-intersperse, grf-main, grf-mite-cluster, grf-nest, gt, imagespread, lib-test.pl, ltr_finder, maskFile.pl, mdust, merge-lmer-tables.prl, nmerge, nseg, ppserver.py, psearch, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, trfMask, viewMSA.pl, wublastToCrossmatch.pl, rmblastn, trf4.10.0-rc.2.linux64.exe, trf, twoBitToFa, blast_report, blastdb_convert, blastdb_path, twoBitInfo, faToTwoBit, theano-cache |
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GITHUB
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quay.io/biocontainers/effectivet3 |
shpc-registry automated BioContainers addition for effectivet3 |
effectivet3, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, extcheck |
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GITHUB
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quay.io/biocontainers/efishent |
singularity registry hpc automated addition for efishent |
AccessFold, AllSub, CircleCompare, CycleFold, DuplexFold, DuplexFold-smp, DynalignDotPlot, EDcalculator, EDcalculator-smp, ETEcalculator, ETEcalculator-smp, EnergyPlot, EnsembleEnergy, Fold, Fold-smp, MaxExpect, MaxExpect-smp, NAPSS, OligoWalk, PARTS, ProbKnot, ProbKnot-smp, ProbScan, ProbabilityPlot, ProbablePair, ProbablePair-smp, RemovePseudoknots, RemovePseudoknots-smp, Rsample, Rsample-smp, ShapeKnots, ShapeKnots-smp, StructureProb, StructureProb-smp, SymmetryTester, TurboFold, TurboFold-smp, TurboHomology, bifold, bifold-smp, bipartition, bipartition-smp, csv-import, ct2dot, design, dot2ct, draw, dynalign, dynalign-smp, dynalign_ii, dynalign_ii-smp, eFISHent, efishent, efn2, efn2-smp, luigi, luigi-deps, luigi-deps-tree, luigi-grep, luigid, multilign, multilign-smp, oligoscreen, oligoscreen-smp, orc-memory, orc-scan, orega, orega-smp, partition, partition-smp, phmm, pyomo, refold, scorer, stochastic, stochastic-smp, timezone-dump, validate, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, docutils, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect, edirect.py |
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GITHUB
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quay.io/biocontainers/ega-cryptor |
singularity registry hpc automated addition for ega-cryptor |
ega-cryptor, idle3.13, pydoc3.13, python3.13, python3.13-config, cups-config, ippeveprinter, ipptool, jaotc, hb-info, jfr, jjs, pack200, rmic, rmid, unpack200, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, tjbench, jdeps, jar |
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GITHUB
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quay.io/biocontainers/ega2 |
shpc-registry automated BioContainers addition for ega2 |
ega2, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/egglib |
shpc-registry automated BioContainers addition for egglib |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/eggnog-mapper |
shpc-registry automated BioContainers addition for eggnog-mapper |
create_dbs.py, download_eggnog_data.py, emapper.py, hmm_mapper.py, hmm_server.py, hmm_worker.py, mmseqs, vba_extract.py, gawk-5.1.0, awk, gawk, diamond, prodigal, hmmpgmd_shard, easel, esl-mixdchlet |
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GITHUB
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quay.io/biocontainers/eigensoft |
shpc-registry automated BioContainers addition for eigensoft |
baseprog, convertf, eigenstrat, eigenstratQTL, mergeit, pca, pcatoy, smarteigenstrat, smartpca, smartrel, smshrink, twstats, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/eigenstratdatabasetools |
shpc-registry automated BioContainers addition for eigenstratdatabasetools |
eigenstrat_database_tools, eigenstrat_rename_snps, eigenstrat_snp_coverage, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/eklipse |
singularity registry hpc automated addition for eklipse |
J01415.2.gb, NC_005089.1.gb, NC_012920.1.gb, eKLIPse.py, eKLIPse_circos.py, eKLIPse_fct.py, eKLIPse_fig2.png, eKLIPse_init.py, eKLIPse_sc.py, eKLIPse_threading.py, eKLIPse_userGuide.pdf, eklipseHeader.png, eklipse_home.png, eklipse_results.png, eklipse_select.png, eklipse_waiting.png, pl2bat.pl, pybam.py, spinner.py, tabulate.py, test_illumina.bam, test_illumina.bam.bai, test_proton.bam, test_proton.bam.bai, circos, circos.exe, compile.bat, compile.make, gddiag, list.modules, test.modules, test_pcre, config_data, tjbench, bdf2gdfont.pl, f2py2, f2py2.7, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh |
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GITHUB
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quay.io/biocontainers/el_gato |
singularity registry hpc automated addition for el_gato |
el_gato.py, elgato_report.py, gfPcr, isPcr, run_el_gato.nf, jwebserver, gfServer, nextflow.bak, nextflow, blastn_vdb, tblastn_vdb, test_pcre, basenc, b2sum, ls, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date |
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GITHUB
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quay.io/biocontainers/elastic-blast |
shpc-registry automated BioContainers addition for elastic-blast |
aws, aws-create-elastic-blast-janitor-role.sh, aws-delete-elastic-blast-janitor-role.sh, aws-describe-elastic-blast-janitor-role.sh, aws-get-auto-scaling-events.sh, aws-show-my-undeleted-searches.sh, aws.cmd, aws_bash_completer, aws_completer, aws_zsh_completer.sh, awslimitchecker, blast-tuner.py, bq, cleanup-stale-gcp-resources.py, create-blastdb-metadata.py, docker-credential-gcloud, elastic-blast, elb-cost.py, fasta_split.py, gcloud, gcp-setup-elastic-blast-janitor.sh, gcp-show-my-undeleted-searches.sh, gcp_ram_size.py, kubectl, publish.py, results2clustername.sh, gsutil, jp.py, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, rst2html4.py, rst2html5.py |
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GITHUB
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quay.io/biocontainers/elasticluster |
shpc-registry automated BioContainers addition for elasticluster |
ansible, ansible-doc, ansible-galaxy, ansible-playbook, ansible-pull, ansible-vault, elasticluster, gflags2man.py, pyrsa-decrypt-bigfile, pyrsa-encrypt-bigfile, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin |
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GITHUB
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quay.io/biocontainers/elector |
shpc-registry automated BioContainers addition for elector |
Donatello, elector, fq2fa, masterSplitter, poa, simulator, sdust, paftools.js, minimap2, k8, f2py3.6, fasta-sanitize.pl, plot-ampliconstats, 2to3-3.6, idle3.6, pydoc3.6 |
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GITHUB
|
quay.io/biocontainers/elprep |
shpc-registry automated BioContainers addition for elprep |
elprep |
|
GITHUB
|
quay.io/biocontainers/ema |
shpc-registry automated BioContainers addition for ema |
ema |
|
GITHUB
|
quay.io/biocontainers/embassy-phylip |
shpc-registry automated BioContainers addition for embassy-phylip |
_fclique, _fconsense, _fcontml, _fcontrast, _fdiscboot, _fdnacomp, _fdnadist, _fdnainvar, _fdnaml, _fdnamlk, _fdnamove, _fdnapars, _fdnapenny, _fdollop, _fdolmove, _fdolpenny, _fdrawgram, _fdrawtree, _ffactor, _ffitch, _ffreqboot, _fgendist, _fkitsch, _fmix, _fmove, _fneighbor, _fpars, _fpenny, _fproml, _fpromlk, _fprotdist, _fprotpars, _frestboot, _frestdist, _frestml, _fretree, _fseqboot, _fseqbootall, _ftreedist, _ftreedistpair, fclique, fconsense, fcontml, fcontrast, fdiscboot, fdnacomp, fdnadist, fdnainvar, fdnaml, fdnamlk, fdnamove, fdnapars, fdnapenny, fdollop, fdolmove, fdolpenny, fdrawgram, fdrawtree, ffactor, ffitch, ffreqboot, fgendist, fkitsch, fmix, fmove, fneighbor, fpars, fpenny, fproml, fpromlk, fprotdist, fprotpars, frestboot, frestdist, frestml, fretree, fseqboot, fseqbootall, ftreedist, ftreedistpair, _aaindexextract, _abiview, _acdc, _acdpretty, _acdtable, _acdtrace, _acdvalid, _antigenic, _backtranambig, _backtranseq |
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GITHUB
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quay.io/biocontainers/embl-api-validator |
shpc-registry automated BioContainers addition for embl-api-validator |
embl-api-validator, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/emblmygff3 |
shpc-registry automated BioContainers addition for emblmygff3 |
EMBLmyGFF3, EMBLmyGFF3-augustus-example, EMBLmyGFF3-maker-example, EMBLmyGFF3-prokka-example, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
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GITHUB
|
quay.io/biocontainers/emboss |
shpc-registry automated BioContainers addition for emboss |
embossdata, embossupdate, embossversion, jembossctl, runJemboss.sh, xmlget, xmltext, aaindexextract, abiview, acdc, acdgalaxy, acdlog, acdpretty, acdtable, acdtrace, acdvalid, aligncopy, aligncopypair, antigenic, assemblyget, backtranambig, backtranseq, banana, biosed, btwisted, cachedas, cachedbfetch, cacheebeyesearch, cacheensembl, chaos, charge, checktrans, cirdna, codcmp, codcopy, coderet, compseq, cons, consambig, cpgplot, cpgreport, cusp, cutgextract, cutseq, dan, dbiblast, dbifasta, dbiflat, dbigcg, dbtell, dbxcompress, dbxedam, dbxfasta, dbxflat, dbxgcg, dbxobo, dbxreport, dbxresource, dbxstat, dbxtax, dbxuncompress, degapseq, density, descseq, diffseq, distmat, dotmatcher, dotpath, dottup, dreg, drfinddata, drfindformat, drfindid, drfindresource, drget, drtext, edamdef, edamhasinput, edamhasoutput, edamisformat, edamisid, edamname, edialign, einverted, emma, emowse, entret, epestfind, eprimer3, eprimer32, equicktandem, est2genome, etandem, extractalign, extractfeat, featcopy, featmerge, featreport, feattext, findkm, freak, fuzznuc, fuzzpro, fuzztran, garnier |
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GITHUB
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quay.io/biocontainers/emeraldbgc |
shpc-registry automated BioContainers addition for emeraldbgc |
emerald_build_gb, emeraldbgc, import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2 |
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GITHUB
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quay.io/biocontainers/emirge |
shpc-registry automated BioContainers addition for emirge |
emirge.py, emirge_amplicon.py, emirge_makedb.py, emirge_rename_fasta.py, vsearch, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect |
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GITHUB
|
quay.io/biocontainers/emmix |
shpc-registry automated BioContainers addition for emmix |
EMMIX |
|
GITHUB
|
quay.io/biocontainers/emmtyper |
shpc-registry automated BioContainers addition for emmtyper |
|
|
GITHUB
|
quay.io/biocontainers/emperor |
shpc-registry automated BioContainers addition for emperor |
make_emperor.py, qcli_make_rst, qcli_make_script, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
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GITHUB
|
quay.io/biocontainers/emptydrops |
shpc-registry automated BioContainers addition for emptydrops |
f2py3.9, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug |
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GITHUB
|
quay.io/biocontainers/emu-pca |
singularity registry hpc automated addition for emu-pca |
emu, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/emu |
shpc-registry automated BioContainers addition for emu |
bioawk, emu, sdust, paftools.js, minimap2, k8, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10 |
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GITHUB
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quay.io/biocontainers/emvc-2 |
singularity registry hpc automated addition for emvc-2 |
candidate_variants_finder, emvc-2, f2py3.8, tqdm, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim, wgsim_eval.pl, samtools, 2to3-3.8, idle3.8, pydoc3.8 |
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GITHUB
|
quay.io/biocontainers/ena-dl |
shpc-registry automated BioContainers addition for ena-dl |
ena-dl, chardetect, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
|
quay.io/biocontainers/ena-upload-cli |
shpc-registry automated BioContainers addition for ena-upload-cli |
ena-upload-cli, xml2-config.bak, normalizer, xslt-config, xsltproc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10 |
|
GITHUB
|
quay.io/biocontainers/ena-webin-cli |
shpc-registry automated BioContainers addition for ena-webin-cli |
ena-webin-cli, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/enabrowsertools |
shpc-registry automated BioContainers addition for enabrowsertools |
assemblyGet.py, enaDataGet, enaDataGet.py, enaGroupGet, enaGroupGet.py, readGet.py, sequenceGet.py, utils.py, utils_py2.py, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/enano |
shpc-registry automated BioContainers addition for enano |
enano |
|
GITHUB
|
quay.io/biocontainers/enasearch |
shpc-registry automated BioContainers addition for enasearch |
enasearch, flake8, pycodestyle, pyflakes, f2py2, f2py2.7, chardetect, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/encode-blacklist |
shpc-registry automated BioContainers addition for encode-blacklist |
Blacklist, bamtools |
|
GITHUB
|
quay.io/biocontainers/encyclopedia |
shpc-registry automated BioContainers addition for encyclopedia |
EncyclopeDIA, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
|
quay.io/biocontainers/endorspy |
shpc-registry automated BioContainers addition for endorspy |
endorspy, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/enrichm |
shpc-registry automated BioContainers addition for enrichm |
chronic, combine, enrichm, errno, ifdata, ifne, isutf8, lckdo, mispipe, pee, seqmagick, sponge, ts, vidir, vipe, zrun, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray, mcxassemble |
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GITHUB
|
quay.io/biocontainers/ensembl-utils |
singularity registry hpc automated addition for ensembl-utils |
dotenv, extract_file, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, normalizer |
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GITHUB
|
quay.io/biocontainers/ensembl-vep |
shpc-registry automated BioContainers addition for ensembl-vep |
filter_vep, haplo, variant_recoder, vep, vep_convert_cache, vep_install, giffilter, gifsponge, unzip, gifecho, gifinto, gdlib-config, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee |
|
GITHUB
|
quay.io/biocontainers/entrez-direct |
shpc-registry automated BioContainers addition for entrez-direct |
asp-ls.bak, edirect.pl.bak, edirutil.bak, erase-pubmed, ftp-cp.bak, ftp-ls.bak, gbf2xml.bak, get-stash-uids, invert-pubmed, log-pubmed, master-pubmed, merge-pubmed, nquire.bak, prepare-stash, promote-pubmed, refresh-versioned, repack-pubmed, run-ncbi-converter.bak, setup-deps.pl.bak, setup.sh.orig, stash-pubmed, common.go, rchive.go, setup-deps.log, setup.sh, xtract.go, asp-cp, asp-ls, has-asp, index-pubmed, eaddress |
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GITHUB
|
quay.io/biocontainers/entrezpy |
shpc-registry automated BioContainers addition for entrezpy |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/eoulsan |
shpc-registry automated BioContainers addition for eoulsan |
eoulsan.sh, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
|
quay.io/biocontainers/epa-ng |
shpc-registry automated BioContainers addition for epa-ng |
epa-ng |
|
GITHUB
|
quay.io/biocontainers/ephemeris |
shpc-registry automated BioContainers addition for ephemeris |
bioblend-galaxy-tests, galaxy-tool-test, galaxy-wait, get-tool-list, mulled-build, mulled-build-channel, mulled-build-files, mulled-build-tool, mulled-search, run-data-managers, setup-data-libraries, shed-tools, workflow-install, workflow-to-tools, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier |
|
GITHUB
|
quay.io/biocontainers/epic |
shpc-registry automated BioContainers addition for epic |
|
|
GITHUB
|
quay.io/biocontainers/epic2 |
shpc-registry automated BioContainers addition for epic2 |
epic2, epic2-bw, epic2-df, natsort, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
|
GITHUB
|
quay.io/biocontainers/epicseg |
shpc-registry automated BioContainers addition for epicseg |
|
|
GITHUB
|
quay.io/biocontainers/epik |
singularity registry hpc automated addition for epik |
epik-aa, epik-dna, epik.py, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
|
quay.io/biocontainers/epimuller |
shpc-registry automated BioContainers addition for epimuller |
cairosvg, epimuller, epimuller-define, epimuller-draw, epimuller-parse, ete3, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util |
|
GITHUB
|
quay.io/biocontainers/episcanpy |
singularity registry hpc automated addition for episcanpy |
dunamai, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, scanpy, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, pt2to3, ptdump, ptrepack, pttree, numba, pycc, natsort, mirror_server, mirror_server_stop, rst2html4.py, rst2html5.py, rst2html.py |
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GITHUB
|
quay.io/biocontainers/epiweeks |
shpc-registry automated BioContainers addition for epiweeks |
2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/epydoc |
shpc-registry automated BioContainers addition for epydoc |
apirst2html.py, epydoc, epydocgui, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/epytope |
shpc-registry automated BioContainers addition for epytope |
_mhcflurry-cluster-worker-entry-point, mhcflurry-calibrate-percentile-ranks, mhcflurry-class1-select-allele-specific-models, mhcflurry-class1-select-pan-allele-models, mhcflurry-class1-train-allele-specific-models, mhcflurry-class1-train-pan-allele-models, mhcflurry-downloads, mhcflurry-predict, pyomo, theano-cache, theano-nose, freeze_graph, mako-render, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin |
|
GITHUB
|
quay.io/biocontainers/eqtlbma |
shpc-registry automated BioContainers addition for eqtlbma |
eqtlbma_avg_bfs, eqtlbma_bf, eqtlbma_bf_parallel.bash, eqtlbma_hm, tutorial_eqtlbma.R, x86_64-conda-linux-gnu-gfortran.bin, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/erds |
shpc-registry automated BioContainers addition for erds |
erds_pipeline, perl5.22.0, c2ph, pstruct, bcftools, vcfutils.pl, samtools, podselect |
|
GITHUB
|
quay.io/biocontainers/ericscript |
shpc-registry automated BioContainers addition for ericscript |
ericscript.pl, blat, seqtk, perl5.32.0, qualfa2fq.pl, xa2multi.pl, bwa, bcftools, vcfutils.pl, shiftBed, annotateBed |
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GITHUB
|
quay.io/biocontainers/erne |
shpc-registry automated BioContainers addition for erne |
erne-bs5, erne-create, erne-filter, erne-map, erne-meth, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/ervdetective |
singularity registry hpc automated addition for ervdetective |
ervdetective, genometools-config, gt, just-first-key, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gbf2fsa, gbf2ref, gm2ranges |
|
GITHUB
|
quay.io/biocontainers/escher |
shpc-registry automated BioContainers addition for escher |
ccache-swig, isympy, pipdeptree, swig, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run, iptest3, curve_keygen |
|
GITHUB
|
quay.io/biocontainers/esimsa |
shpc-registry automated BioContainers addition for esimsa |
esimsa |
|
GITHUB
|
quay.io/biocontainers/eskrim |
singularity registry hpc automated addition for eskrim |
eskrim, jellyfish, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/esmre |
shpc-registry automated BioContainers addition for esmre |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/espresso |
singularity registry hpc automated addition for espresso |
ESPRESSO_C.pl, ESPRESSO_Q.pl, ESPRESSO_Q_Thread.pm, ESPRESSO_S.pl, ESPRESSO_Version.pm, test_pcre, hmmpgmd_shard, easel, esl-mixdchlet, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn, esl-seqrange, esl-seqstat |
|
GITHUB
|
quay.io/biocontainers/est-sfs |
singularity registry hpc automated addition for est-sfs |
est-sfs |
|
GITHUB
|
quay.io/biocontainers/estscan |
shpc-registry automated BioContainers addition for estscan |
estscan |
|
GITHUB
|
quay.io/biocontainers/esviritu |
singularity registry hpc automated addition for esviritu |
EsViritu, bioawk, bwa-mem2, bwa-mem2.avx, bwa-mem2.avx2, bwa-mem2.avx512bw, bwa-mem2.sse41, bwa-mem2.sse42, coverm, dadaist2-mergeseqs, dashing, fu-16Sregion, fu-cov, fu-homocomp, fu-index, fu-msa, fu-multirelabel, fu-nanotags, fu-orf, fu-primers, fu-shred, fu-split, fu-sw, fu-tabcheck, fu-virfilter, hb-info, remove_minimap2_duplicated_headers, seqfu, starcode, fastANI, seqkit, fastp, test_pcre, tjbench, igzip, f2py3.11, sdust, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, k8, paftools.js, minimap2, qualfa2fq.pl, xa2multi.pl, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table |
|
GITHUB
|
quay.io/biocontainers/eta |
shpc-registry automated BioContainers addition for eta |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/ete2 |
shpc-registry automated BioContainers addition for ete2 |
ete, pylupdate4, pyrcc4, pyuic4, qdoc3, qmlviewer, qt3to4, qtconfig, qttracereplay, my_print_defaults, mysql_config, perror, qhelpconverter, f2py2, f2py2.7, sip, xslt-config, xsltproc, assistant |
|
GITHUB
|
quay.io/biocontainers/ete3 |
shpc-registry automated BioContainers addition for ete3 |
ete3, qhelpconverter, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner, repc, pylupdate5, pyrcc5 |
|
GITHUB
|
quay.io/biocontainers/eternafold |
singularity registry hpc automated addition for eternafold |
eternafold |
|
GITHUB
|
quay.io/biocontainers/etoki |
singularity registry hpc automated addition for etoki |
EToKi.py, GenomeAnalysisTK, SimBac, Xcalcmem.sh, attr, balsam, coronaspades.py, esdcompat, fasta-nr, fastq-interleave, flye, flye-minimap2, flye-modules, flye-samtools, gatk-register, getfattr, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, kraken2, kraken2-build, kraken2-inspect, last-dotplot, last-map-probs, last-merge-batches, last-pair-probs, last-postmask, last-split, last-split5, last-train, lastal, lastal5, lastdb, lastdb5, lprodump, lrelease-pro, lupdate-pro, maf-convert, maf-cut, maf-join, maf-sort, maf-swap, meshdebug, metaplasmidspades.py, metaviralspades.py, nextPolish, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parallel-fasta, parallel-fastq, paralleltask, parec, parecord, pasuspender, pilercr, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, rapidnj, raxml-ng, raxml-ng-mpi, rnaviralspades.py, seq_count, seq_split, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, flac, gatk, kmutate.sh, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, metaflac, rsync-ssl, runhmm.sh, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, megahit, megahit_toolkit, pilon, trf4.10.0-rc.2.linux64.exe, kmerposition.sh, reformatpb.sh |
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GITHUB
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quay.io/biocontainers/eukcc |
shpc-registry automated BioContainers addition for eukcc |
binlinks.py, epa-ng, eukcc, filter_euk_bins.py, metaeuk, shared_markers, rppr, guppy, pplacer, ete3, gawk-5.1.0, xkbcli, awk, gawk, pg_config, qdistancefieldgenerator |
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GITHUB
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quay.io/biocontainers/eukfinder |
singularity registry hpc automated addition for eukfinder |
Eukfinder.py, acc2tax, centrifuge, centrifuge-BuildSharedSequence.pl, centrifuge-RemoveEmptySequence.pl, centrifuge-RemoveN.pl, centrifuge-build, centrifuge-build-bin, centrifuge-class, centrifuge-compress.pl, centrifuge-download, centrifuge-inspect, centrifuge-inspect-bin, centrifuge-kreport, centrifuge-sort-nt.pl, centrifuge_evaluate.py, centrifuge_simulate_reads.py, eukfinder, plast, coronaspades.py, metaplasmidspades.py, metaviralspades.py, rnaviralspades.py, seqkit, cds-mapping-stats, cds-subgraphs, mag-improve, spades-convert-bin-to-fasta, spades-gsimplifier, spades-kmer-estimating, spades-read-filter, spaligner, spades-bwa, spades-core, spades-corrector-core, spades-gbuilder, spades-gmapper, spades-hammer, spades-ionhammer, spades-kmercount, spades-truseq-scfcorrection, trimmomatic, metaspades.py, plasmidspades.py |
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GITHUB
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quay.io/biocontainers/eukrep |
shpc-registry automated BioContainers addition for eukrep |
EukRep, kpal, futurize, pasteurize, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config |
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GITHUB
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quay.io/biocontainers/eukulele |
shpc-registry automated BioContainers addition for eukulele |
EUKulele, after_job.sh, concatenate_busco.sh, configure_busco.sh, coordinate_batch.sh, create_protein_table.py, download_database.sh, install_dependencies.sh, run_busco.sh, test_pcre, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, diamond, seedtop, idn2, blast_formatter, blastdb_aliastool |
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GITHUB
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quay.io/biocontainers/eva-sub-cli |
singularity registry hpc automated addition for eva-sub-cli |
archive_directory.py, biovalidator, check_fasta_insdc.py, eva-sub-cli.py, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, samples_checker.py, vcf_assembly_checker, vcf_validator, xlsx2json.py, corepack, nextflow.bak, npx, nextflow, node, npm, jwebserver, basenc, b2sum, ls, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date |
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GITHUB
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quay.io/biocontainers/eval |
shpc-registry automated BioContainers addition for eval |
RangeFinder.py, combine_eval_reports.pl, eval.pl, evaluate_gtf.pl, filter_badlist.pl, filter_gtfs.pl, get_distribution.pl, get_general_stats.pl, get_overlap_stats.pl, gff3_to_gtf.pl, graph_gtfs.pl, make_intron_lenght_vs_performance_graph.pl, merge_gtf_transcripts.py, validate_gtf.pl, validate_splice_sites.pl, bp_pairwise_kaks.pl, bp_search2BSML.pl, bp_aacomp.pl, bp_biofetch_genbank_proxy.pl, bp_bioflat_index.pl, bp_biogetseq.pl, bp_blast2tree.pl, bp_bulk_load_gff.pl, bp_chaos_plot.pl, bp_classify_hits_kingdom.pl |
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GITHUB
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quay.io/biocontainers/evidencemodeler |
shpc-registry automated BioContainers addition for evidencemodeler |
evidence_modeler.pl, perl5.26.2, podselect |
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GITHUB
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quay.io/biocontainers/evigene |
singularity registry hpc automated addition for evigene |
esd2esi, exonerate, exonerate-server, fasta2esd, fastaannotatecdna, fastachecksum, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasubseq, fastatranslate, fastavalidcds, ipcress, fastaclean, fastasplit, blastn_vdb, tblastn_vdb, uuid, uuid-config, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div, cd-hit-div.pl, cd-hit-est-2d, cd-hit-para.pl, clstr2tree.pl, clstr2txt.pl, clstr2xml.pl, clstr_cut.pl, clstr_merge.pl, clstr_merge_noorder.pl, clstr_quality_eval.pl |
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GITHUB
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quay.io/biocontainers/evofold2 |
shpc-registry automated BioContainers addition for evofold2 |
EvoFoldV2, EvoFoldV2.sh, dfgEval, dfgTrain, grammarTrain, multinomial |
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GITHUB
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quay.io/biocontainers/evofr |
singularity registry hpc automated addition for evofr |
f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, protoc, normalizer, tqdm, python3.1 |
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GITHUB
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quay.io/biocontainers/examine |
shpc-registry automated BioContainers addition for examine |
examine, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/exomiser-rest-prioritiser |
shpc-registry automated BioContainers addition for exomiser-rest-prioritiser |
exomiser-rest-prioritiser, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/exonerate |
shpc-registry automated BioContainers addition for exonerate |
esd2esi, exonerate, exonerate-server, fasta2esd, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds, ipcress, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/expam |
singularity registry hpc automated addition for expam |
expam, expam_limit, pt2to3, ptdump, ptrepack, pttree, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, f2py3.9, opj_compress, opj_decompress, opj_dump, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import |
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GITHUB
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quay.io/biocontainers/expansionhunter |
shpc-registry automated BioContainers addition for expansionhunter |
ExpansionHunter, f2py3.8, htsfile, bgzip, tabix, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/expansionhunterdenovo |
shpc-registry automated BioContainers addition for expansionhunterdenovo |
ExpansionHunterDenovo, ccmake, cmake, cpack, ctest, ed2k-link, edonr256-hash, edonr512-hash, gost12-256-hash, gost12-512-hash, has160-hash, magnet-link, rhash, sfv-hash, tiger-hash, tth-hash, whirlpool-hash, htsfile, bgzip, tabix, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/exparna |
shpc-registry automated BioContainers addition for exparna |
ExpaRNA, RNAmultifold, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold |
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GITHUB
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quay.io/biocontainers/expat |
shpc-registry automated BioContainers addition for expat |
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GITHUB
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quay.io/biocontainers/export2graphlan |
shpc-registry automated BioContainers addition for export2graphlan |
export2graphlan.py, hclust2.py, compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, f2py2 |
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GITHUB
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quay.io/biocontainers/express |
shpc-registry automated BioContainers addition for express |
express |
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GITHUB
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quay.io/biocontainers/expressbetadiversity |
shpc-registry automated BioContainers addition for expressbetadiversity |
AbstractPlot.py, ExpressBetaDiversity, convertToEBD.py, convertToFullMatrix.py, pcoaPlot.py, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp |
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GITHUB
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quay.io/biocontainers/extern |
shpc-registry automated BioContainers addition for extern |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/extract-codon-alignment |
shpc-registry automated BioContainers addition for extract-codon-alignment |
extract_codon_alignment, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/extract-sv-reads |
shpc-registry automated BioContainers addition for extract-sv-reads |
extract-sv-reads, htsfile, bgzip, tabix, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/extract_fasta_seq |
shpc-registry automated BioContainers addition for extract_fasta_seq |
extract_fasta_seq, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/extract_fullseq |
shpc-registry automated BioContainers addition for extract_fullseq |
extract_fullseq |
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GITHUB
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quay.io/biocontainers/extract_genome_region |
shpc-registry automated BioContainers addition for extract_genome_region |
extract_genome_region, faidx, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/extract_vcf |
singularity registry hpc automated addition for extract_vcf |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/extracthifi |
shpc-registry automated BioContainers addition for extracthifi |
extracthifi |
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GITHUB
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quay.io/biocontainers/extractpirs |
shpc-registry automated BioContainers addition for extractpirs |
extractPIRs |
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GITHUB
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quay.io/biocontainers/ezaai |
singularity registry hpc automated addition for ezaai |
EzAAI, mmseqs, clhsdb, hsdb, gawk-5.1.0, awk, gawk, diamond, prodigal, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns |
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GITHUB
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quay.io/biocontainers/ezcharts |
singularity registry hpc automated addition for ezcharts |
ezcharts, pymsaviz, pysassc, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, bokeh, py.test, pytest, natsort, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fonttools, pyftmerge, pyftsubset, ttx, tjbench, brotli, opj_compress, opj_decompress, opj_dump |
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GITHUB
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quay.io/biocontainers/ezclermont |
shpc-registry automated BioContainers addition for ezclermont |
ezclermont, coverage, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/ezomero |
singularity registry hpc automated addition for ezomero |
omero, slice2py, futurize, pasteurize, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/f5c |
shpc-registry automated BioContainers addition for f5c |
f5c, mirror_server, mirror_server_stop, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy |
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GITHUB
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quay.io/biocontainers/fadapa |
shpc-registry automated BioContainers addition for fadapa |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/fade |
shpc-registry automated BioContainers addition for fade |
fade |
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GITHUB
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quay.io/biocontainers/fairease-source |
singularity registry hpc automated addition for fairease-source |
create_probes_earth_map.py, csv2kml, data_information_calc.py, depth_aggregator.py, depth_calc.py, duplicated_records_remover.py, find_variable_name.py, insitu_evaluation.py, insitu_tac_platforms_finder.py, insitu_tac_pre_processing.py, insitu_tac_timeseries_extractor.py, kml2pykml, mean_variance_nc_variable.py, metadata_merger.py, model_datasets_concatenator.py, model_postpro.py, nc3tonc4, nc4tonc3, ncinfo, obs_postpro.py, pointwise_datasets_concatenator.py, ptmp_to_temp.py, quality_check_applier.py, real_time_concatenator.py, records_monotonicity_fixer.py, rejection_statistics.py, time_averager.py, time_calc.py, time_check.py, time_from_index.py, time_series_post_processing.py, unique_values_nc_variable.py, validate_kml, vertical_interpolation.py, h5delete, unidecode, tjbench, aec, f2py3.11, zipcmp, zipmerge, ziptool, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport |
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GITHUB
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quay.io/biocontainers/fairy |
singularity registry hpc automated addition for fairy |
fairy |
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GITHUB
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quay.io/biocontainers/falco |
shpc-registry automated BioContainers addition for falco |
falco, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/famsa |
shpc-registry automated BioContainers addition for famsa |
famsa |
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GITHUB
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quay.io/biocontainers/famseq |
shpc-registry automated BioContainers addition for famseq |
FamSeq |
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GITHUB
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quay.io/biocontainers/fanc |
shpc-registry automated BioContainers addition for fanc |
calc-prorate, cheroot, cherryd, convert-regions, fanc, fancplot, gridmap_web, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng |
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GITHUB
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quay.io/biocontainers/fann |
shpc-registry automated BioContainers addition for fann |
|
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GITHUB
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quay.io/biocontainers/faqcs |
shpc-registry automated BioContainers addition for faqcs |
FaQCs |
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GITHUB
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quay.io/biocontainers/fargene |
shpc-registry automated BioContainers addition for fargene |
ORFfinder, fargene, fargene_model_creation, pick_long_reads, trim_galore, clustalo, _aaindexextract, _abiview, _acdc, _acdpretty, _acdtable, _acdtrace, _acdvalid, _antigenic, _backtranambig |
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GITHUB
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quay.io/biocontainers/fast-edit-distance |
singularity registry hpc automated addition for fast-edit-distance |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/fast5-research |
shpc-registry automated BioContainers addition for fast5-research |
extract_reads, conv-template, from-template, py.test, pytest, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m |
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GITHUB
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quay.io/biocontainers/fast5 |
shpc-registry automated BioContainers addition for fast5 |
|
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GITHUB
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quay.io/biocontainers/fast5seek |
shpc-registry automated BioContainers addition for fast5seek |
fast5_subset, fast5seek, multi_to_single_fast5, single_to_multi_fast5, f2py3.6, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, 2to3-3.6, idle3.6 |
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GITHUB
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quay.io/biocontainers/fasta-splitter |
shpc-registry automated BioContainers addition for fasta-splitter |
fasta-splitter, perl5.26.2, podselect |
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GITHUB
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quay.io/biocontainers/fasta3 |
shpc-registry automated BioContainers addition for fasta3 |
ann_exons_all.pl, ann_exons_ens.pl, ann_exons_ncbi.pl, ann_exons_up_sql.pl, ann_exons_up_sql_www.pl, ann_exons_up_www.pl, ann_feats2ipr.pl, ann_feats2ipr_e.pl, ann_feats_up_sql.pl, ann_feats_up_www2.pl, ann_ipr_www.pl, ann_pdb_cath.pl, ann_pdb_vast.pl, ann_pfam30_tmptbl.pl, ann_pfam_sql.pl, ann_pfam_www.pl, ann_upfeats_pfam_www_e.pl, annot_blast_btop2.pl, color_defs.pl, exp_up_ensg.pl, expand_links.pl, expand_refseq_isoforms.pl, expand_uniref50.pl, expand_up_isoforms.pl, fasta36, fastf36, fastm36, fasts36, fastx36, fasty36, ggsearch36, glsearch36, lalign36, lav2plt.pl, lavplt_ps.pl, lavplt_svg.pl, links2sql.pl, m8_btop_msa.pl, m9B_btop_msa.pl, map_db, merge_blast_btab.pl, merge_fasta_btab.pl, parse_m9.pl, res2R.pl, shuffle_embed.pl, ssearch36, summ_domain_ident.pl, tfastf36, tfastm36, tfasts36, tfastx36, tfasty36 |
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GITHUB
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quay.io/biocontainers/fasta_ushuffle |
shpc-registry automated BioContainers addition for fasta_ushuffle |
fasta_ushuffle, ushuffle |
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GITHUB
|
quay.io/biocontainers/fasta_windows |
shpc-registry automated BioContainers addition for fasta_windows |
fasta_windows |
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GITHUB
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quay.io/biocontainers/fastafunk |
shpc-registry automated BioContainers addition for fastafunk |
fastafunk, dendropy-format, sumlabels.py, sumtrees.py, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/fastagap |
singularity registry hpc automated addition for fastagap |
fastagap |
|
GITHUB
|
quay.io/biocontainers/fastahack |
shpc-registry automated BioContainers addition for fastahack |
fastahack |
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GITHUB
|
quay.io/biocontainers/fastaindex |
shpc-registry automated BioContainers addition for fastaindex |
FastaIndex, fasta_stats, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
|
quay.io/biocontainers/fastalite |
shpc-registry automated BioContainers addition for fastalite |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/fastani |
shpc-registry automated BioContainers addition for fastani |
fastANI |
|
GITHUB
|
quay.io/biocontainers/fastaptamer |
shpc-registry automated BioContainers addition for fastaptamer |
fastaptamer_cluster, fastaptamer_cluster_xs, fastaptamer_compare, fastaptamer_count, fastaptamer_enrich, fastaptamer_search, perl5.32.0, streamzip |
|
GITHUB
|
quay.io/biocontainers/fastdtw |
shpc-registry automated BioContainers addition for fastdtw |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
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GITHUB
|
quay.io/biocontainers/fasten |
shpc-registry automated BioContainers addition for fasten |
fasten_clean, fasten_combine, fasten_convert, fasten_kmer, fasten_metrics, fasten_mutate, fasten_pe, fasten_progress, fasten_quality_filter, fasten_randomize, fasten_regex, fasten_replace, fasten_sample, fasten_shuffle, fasten_sort, fasten_straighten, fasten_trim, fasten_validate |
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GITHUB
|
quay.io/biocontainers/fastg2protlib |
shpc-registry automated BioContainers addition for fastg2protlib |
xslt-config, xsltproc, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc |
|
GITHUB
|
quay.io/biocontainers/fastindep |
shpc-registry automated BioContainers addition for fastindep |
fastindep, fastindep-symmetry |
|
GITHUB
|
quay.io/biocontainers/fastk |
singularity registry hpc automated addition for fastk |
FastK, Fastcp, Fastmerge, Fastmv, Fastrm, Haplex, Histex, Homex, Logex, Profex, Symmex, Tabex, Vennex |
|
GITHUB
|
quay.io/biocontainers/fastkit |
singularity registry hpc automated addition for fastkit |
fastkit, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/fastlin |
singularity registry hpc automated addition for fastlin |
fastlin |
|
GITHUB
|
quay.io/biocontainers/fastlmm |
shpc-registry automated BioContainers addition for fastlmm |
get_objgraph, undill, qhelpconverter, f2py2, f2py2.7, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc |
|
GITHUB
|
quay.io/biocontainers/fastme |
shpc-registry automated BioContainers addition for fastme |
fastme |
|
GITHUB
|
quay.io/biocontainers/fastml |
shpc-registry automated BioContainers addition for fastml |
FastML_Wrapper.pl, fastml, bp_pairwise_kaks.pl, bp_search2BSML.pl, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, bp_aacomp.pl, bp_biofetch_genbank_proxy.pl |
|
GITHUB
|
quay.io/biocontainers/fastmlst |
shpc-registry automated BioContainers addition for fastmlst |
fastmlst, test_pcre, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, seedtop, tqdm, run_with_lock, f2py3.8, blast_formatter |
|
GITHUB
|
quay.io/biocontainers/fastobo |
shpc-registry automated BioContainers addition for fastobo |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/fastool |
shpc-registry automated BioContainers addition for fastool |
fastool |
|
GITHUB
|
quay.io/biocontainers/fastools |
singularity registry hpc automated addition for fastools |
fastools, split_fasta, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/fastp |
shpc-registry automated BioContainers addition for fastp |
fastp |
|
GITHUB
|
quay.io/biocontainers/fastpca |
shpc-registry automated BioContainers addition for fastpca |
fastpca |
|
GITHUB
|
quay.io/biocontainers/fastphylo |
shpc-registry automated BioContainers addition for fastphylo |
fastdist, fastprot, fastprot_mpi, fnj, aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info, opal_wrapper, orte-clean, orte-info, orte-server |
|
GITHUB
|
quay.io/biocontainers/fastplong |
singularity registry hpc automated addition for fastplong |
fastplong, igzip |
|
GITHUB
|
quay.io/biocontainers/fastq-and-furious |
shpc-registry automated BioContainers addition for fastq-and-furious |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/fastq-anonymous |
shpc-registry automated BioContainers addition for fastq-anonymous |
fastq-anonymous, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/fastq-count |
shpc-registry automated BioContainers addition for fastq-count |
fastq-count |
|
GITHUB
|
quay.io/biocontainers/fastq-dl |
shpc-registry automated BioContainers addition for fastq-dl |
abi-dump.2.11.0, abi-load, abi-load.2, abi-load.2.11.0, align-cache.2.11.0, align-info.2.11.0, bam-load.2.11.0, cache-mgr.2.11.0, ccextract, ccextract.2, ccextract.2.11.0, cg-load.2.11.0, executor, fasterq-dump-orig.2.11.0, fasterq-dump.2.11.0, fastq-dl, fastq-dump-orig.2.11.0, fastq-dump.2.11.0, fastq-load, fastq-load.2, fastq-load.2.11.0, helicos-load, helicos-load.2, helicos-load.2.11.0, illumina-dump.2.11.0, illumina-load, illumina-load.2, illumina-load.2.11.0, kar.2.11.0, kdbmeta.2.11.0, kget.2.11.0, latf-load.2.11.0, md5cp.2.11.0, pacbio-load, pacbio-load.2, pacbio-load.2.11.0, pacbio-loadxml, pacbio-loadxml.2, pacbio-loadxml.2.11.0, prefetch-orig.2.11.0, prefetch.2.11.0, rcexplain.2.11.0, read-filter-redact.2.11.0, sam-dump-orig.2.11.0, sam-dump.2.11.0, sff-dump.2.11.0, sff-load, sff-load.2, sff-load.2.11.0, sra-pileup-orig.2.11.0, sra-pileup.2.11.0, sra-sort-cg.2.11.0, sra-sort.2.11.0, sra-stat.2.11.0, srapath-orig.2.11.0, srapath.2.11.0, sratools.2.11.0, srf-load, srf-load.2, srf-load.2.11.0, test-sra.2.11.0, vdb-config.2.11.0, vdb-copy.2.11.0, vdb-decrypt.2.11.0, vdb-diff.2.11.0, vdb-dump-orig.2.11.0, vdb-dump.2.11.0, vdb-encrypt.2.11.0, vdb-lock.2.11.0, vdb-passwd.2.11.0, vdb-unlock.2.11.0, vdb-validate.2.11.0, align-cache.2, md5cp.2, read-filter-redact.2, sra-sort-cg.2, vdb-diff.2, align-cache, fasterq-dump-orig, fastq-dump-orig, md5cp, prefetch-orig |
|
GITHUB
|
quay.io/biocontainers/fastq-filter |
singularity registry hpc automated addition for fastq-filter |
fastq-filter, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/fastq-join |
shpc-registry automated BioContainers addition for fastq-join |
fastq-join |
|
GITHUB
|
quay.io/biocontainers/fastq-multx |
shpc-registry automated BioContainers addition for fastq-multx |
fastq-multx |
|
GITHUB
|
quay.io/biocontainers/fastq-pair |
shpc-registry automated BioContainers addition for fastq-pair |
fastq_pair |
|
GITHUB
|
quay.io/biocontainers/fastq-scan |
shpc-registry automated BioContainers addition for fastq-scan |
fastq-scan, jq, onig-config |
|
GITHUB
|
quay.io/biocontainers/fastq-screen |
shpc-registry automated BioContainers addition for fastq-screen |
bdf2gdfont.PLS, cvtbdf.pl, fastq_screen, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect, gdlib-config |
|
GITHUB
|
quay.io/biocontainers/fastq-tools |
shpc-registry automated BioContainers addition for fastq-tools |
fastq-grep, fastq-kmers, fastq-match, fastq-qscale, fastq-qual, fastq-qualadj, fastq-sample, fastq-sort, fastq-uniq |
|
GITHUB
|
quay.io/biocontainers/fastq_utils |
shpc-registry automated BioContainers addition for fastq_utils |
bam2fastq, bam_add_tags, bam_annotate.sh, bam_umi_count, fastq2bam, fastq_filter_n, fastq_filterpair, fastq_info, fastq_not_empty, fastq_num_reads, fastq_pre_barcodes, fastq_split_interleaved, fastq_tests, fastq_trim_poly_at, fastq_truncate, fastq_validator.sh, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa |
|
GITHUB
|
quay.io/biocontainers/fastqc-rs |
shpc-registry automated BioContainers addition for fastqc-rs |
fqc |
|
GITHUB
|
quay.io/biocontainers/fastqc |
shpc-registry automated BioContainers addition for fastqc |
fastqc |
|
GITHUB
|
quay.io/biocontainers/fastqe |
shpc-registry automated BioContainers addition for fastqe |
fastqe, pyemojify, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/fastqmetrics |
shpc-registry automated BioContainers addition for fastqmetrics |
fastqmetrics, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/fastqpuri |
shpc-registry automated BioContainers addition for fastqpuri |
Qreport, Sreport, makeBloom, makeTree, trimFilter, trimFilterPE, pandoc |
|
GITHUB
|
quay.io/biocontainers/fastqsplitter |
shpc-registry automated BioContainers addition for fastqsplitter |
fastqsplitter, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, 2to3-3.8, idle3.8, pydoc3.8, python3.8 |
|
GITHUB
|
quay.io/biocontainers/fastqtk |
singularity registry hpc automated addition for fastqtk |
fastqtk |
|
GITHUB
|
quay.io/biocontainers/fastremap-bio |
singularity registry hpc automated addition for fastremap-bio |
FastRemap |
|
GITHUB
|
quay.io/biocontainers/fastsimbac |
shpc-registry automated BioContainers addition for fastsimbac |
fastSimBac, msformatter, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/fastspar |
shpc-registry automated BioContainers addition for fastspar |
fastspar, fastspar_bootstrap, fastspar_pvalues, fastspar_reduce |
|
GITHUB
|
quay.io/biocontainers/faststructure |
shpc-registry automated BioContainers addition for faststructure |
chooseK.py, distruct.py, structure.py, qhelpconverter, f2py2, f2py2.7, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner, repc |
|
GITHUB
|
quay.io/biocontainers/fasttree |
shpc-registry automated BioContainers addition for fasttree |
FastTree, FastTree.c, FastTreeMP, fasttree |
|
GITHUB
|
quay.io/biocontainers/fastuniq |
shpc-registry automated BioContainers addition for fastuniq |
fastuniq |
|
GITHUB
|
quay.io/biocontainers/fastutils |
shpc-registry automated BioContainers addition for fastutils |
fastutils |
|
GITHUB
|
quay.io/biocontainers/fastv |
shpc-registry automated BioContainers addition for fastv |
fastv |
|
GITHUB
|
quay.io/biocontainers/fastx_toolkit |
shpc-registry automated BioContainers addition for fastx_toolkit |
|
|
GITHUB
|
quay.io/biocontainers/fates-emerald |
shpc-registry automated BioContainers addition for fates-emerald |
|
|
GITHUB
|
quay.io/biocontainers/favites_lite |
singularity registry hpc automated addition for favites_lite |
GEMF, GEMF_FAVITES.py, coatran_constant, coatran_expgrowth, coatran_inftime, coatran_transtree, favites_lite.py, ngg_barabasi_albert, ngg_barbell, ngg_complete, ngg_cycle, ngg_empty, ngg_erdos_renyi, ngg_newman_watts_strogatz, ngg_path, ngg_ring_lattice, seq-gen, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/fba |
shpc-registry automated BioContainers addition for fba |
fba, umi_tools, igzip, pbunzip2, pbzcat, pbzip2, numba, pycc, pigz, unpigz, fonttools, pyftmerge |
|
GITHUB
|
quay.io/biocontainers/fcp |
shpc-registry automated BioContainers addition for fcp |
AddModel.py, BLASTN.py, BuildBlastDB.py, Epsilon-NB.py, FCP_install.py, LCA+Epsilon-NB.py, LCA.py, NB-BL.py, TaxonomicSummary.py, aalookup_unit_test, aascan_unit_test, align_format_unit_test, bdbloader_unit_test, bl2seq_unit_test, blast_format_unit_test, blast_services_unit_test, blast_unit_test, blastdb_format_unit_test, blastdiag_unit_test, blastengine_unit_test, blastextend_unit_test, blastfilter_unit_test, blasthits_unit_test, blastinput_unit_test, blastoptions_unit_test, blastsetup_unit_test, delta_unit_test, gapinfo_unit_test, gencode_singleton_unit_test, gene_info_unit_test, hspfilter_besthit_unit_test, hspfilter_culling_unit_test, hspstream_unit_test, linkhsp_unit_test, magicblast_unit_test, msa2pssm_unit_test, nb-classify, nb-train, ntlookup_unit_test, ntscan_unit_test, optionshandle_unit_test, phiblast_unit_test, prelimsearch_unit_test, psibl2seq_unit_test, psiblast_iteration_unit_test, psiblast_unit_test, pssmcreate_unit_test, pssmenginefreqratios_unit_test, querydata_unit_test, queryinfo_unit_test, redoalignment_unit_test, remote_blast_unit_test, rps_unit_test, scoreblk_unit_test, search_strategy_unit_test, seqdb_unit_test, seqinfosrc_unit_test, seqsrc_unit_test, setupfactory_unit_test, split_query_unit_test, stat_unit_test, subj_ranges_unit_test, traceback_unit_test, tracebacksearch_unit_test, uniform_search_unit_test, version_reference_unit_test, writedb_unit_test, test_pcre, easy_install-2.7, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, seedtop, uconv, run_with_lock, blast_formatter |
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GITHUB
|
quay.io/biocontainers/fcsparser |
shpc-registry automated BioContainers addition for fcsparser |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/feature_merge |
shpc-registry automated BioContainers addition for feature_merge |
feature_merge, pbr, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, faidx, 2to3-3.9, idle3.9, pydoc3.9 |
|
GITHUB
|
quay.io/biocontainers/fec |
singularity registry hpc automated addition for fec |
Fec, parse_sam.py, sdust, paftools.js, minimap2, k8, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/feelnc |
shpc-registry automated BioContainers addition for feelnc |
FEELnc_classifier.pl, FEELnc_classifier.pl.bak, FEELnc_codpot.pl, FEELnc_codpot.pl.bak, FEELnc_filter.pl, FEELnc_filter.pl.bak, FEELnc_pipeline.sh, FEELnc_tpLevel2gnLevelClassification.R, FEELnc_tpLevel2gnLevelClassification.R.bak, KmerInShort, fasta_ushuffle, ushuffle, gdlib-config, bam2bedgraph, bp_find-blast-matches.pl, ace.pl, ccconfig, SOAPsh.pl, map, mirrorMappings, mkCSGB2312, mkmapfile |
|
GITHUB
|
quay.io/biocontainers/feems |
singularity registry hpc automated addition for feems |
demes, epsg_tr.py, esri2wkt.py, fio, gcps2vec.py, gcps2wld.py, gdal2tiles.py, gdal2xyz.py, gdal_auth.py, gdal_calc.py, gdal_edit.py, gdal_fillnodata.py, gdal_merge.py, gdal_pansharpen.py, gdal_polygonize.py, gdal_proximity.py, gdal_retile.py, gdal_sieve.py, gdalchksum.py, gdalcompare.py, gdalident.py, gdalimport.py, gdalmove.py, mkgraticule.py, msp, mspms, ogrmerge.py, pct2rgb.py, pyproj, rgb2pct.py, tskit, testepsg, pg_standby, gdal_create, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, dap-config, dap-config-pkgconfig, gdal-config, gdal_contour, gdal_grid, gdal_rasterize, gdal_translate, gdaladdo |
|
GITHUB
|
quay.io/biocontainers/fegenie |
shpc-registry automated BioContainers addition for fegenie |
FeGenie.py, aggregateBinDepths.pl, aggregateContigOverlapsByBin.pl, contigOverlaps, jgi_summarize_bam_contig_depths, merge_depths.pl, metabat, metabat1, metabat2, runMetaBat.sh, pandoc-server, diamond, prodigal, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns |
|
GITHUB
|
quay.io/biocontainers/feht |
shpc-registry automated BioContainers addition for feht |
feht |
|
GITHUB
|
quay.io/biocontainers/fermi-lite |
shpc-registry automated BioContainers addition for fermi-lite |
fml-asm |
|
GITHUB
|
quay.io/biocontainers/fermi |
shpc-registry automated BioContainers addition for fermi |
|
|
GITHUB
|
quay.io/biocontainers/ffgc |
singularity registry hpc automated addition for ffgc |
ffgc_create_project.py, markdown-it, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray, mcxassemble, mcxdeblast, mcxdump, mcxi, mcxload, mcxmap, mcxrand, mcxsubs, stone, yte, plac_runner.py, docutils, f2py3.11, pulptest, grpc_cpp_plugin |
|
GITHUB
|
quay.io/biocontainers/ffindex-dbkit |
shpc-registry automated BioContainers addition for ffindex-dbkit |
dbkit_create.py, dbkit_extract.py, dbkit_merge.py, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/ffindex |
shpc-registry automated BioContainers addition for ffindex |
|
|
GITHUB
|
quay.io/biocontainers/ffq |
shpc-registry automated BioContainers addition for ffq |
ffq, xml2-config.bak, normalizer, xslt-config, xsltproc, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/fftw |
shpc-registry automated BioContainers addition for fftw |
fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
|
GITHUB
|
quay.io/biocontainers/fgap |
shpc-registry automated BioContainers addition for fgap |
FGAP, fgap.m, mkoctfile, mkoctfile-4.2.1, octave, octave-4.2.1, octave-cli, octave-cli-4.2.1, octave-config, octave-config-4.2.1, sndfile-regtest, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set |
|
GITHUB
|
quay.io/biocontainers/fgbio-minimal |
singularity registry hpc automated addition for fgbio-minimal |
fgbio, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd |
|
GITHUB
|
quay.io/biocontainers/fgbio |
shpc-registry automated BioContainers addition for fgbio |
fgbio, cups-config, ippeveprinter, ipptool, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/fgmp |
shpc-registry automated BioContainers addition for fgmp |
PF00225_full.blocks.txt, PF00225_seed.blocks.txt, SplicedAlignment.pm, aa2nonred.pl, add_name_to_gff3.pl, aln2wig, augustify.py, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, bam2wig, bamToWig.py, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, cdbfasta, cdbyank, cegma2gff.pl, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, compare_masking.pl, compileSpliceCands, computeFlankingRegion.pl, createAugustusJoblist.pl, del_from_prfl.pl, esd2esi, evalCGP.pl, eval_dualdecomp.pl, eval_multi_gtf.pl, executeTestCGP.py, exonerate, exonerate-server, exonerate2hints.pl, exoniphyDb2hints.pl, extractAnno.py, extractTranscriptEnds.pl, fasta2esd, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds, fgmp, filter-ppx.pl, filterGenes.pl, filterGenesIn.pl, filterGenesIn_mRNAname.pl, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, findGffNamesInFasta.pl, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, getAnnoFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, getSeq, get_loci_from_gb.pl, gff2gbSmallDNA.pl, gff2ps_mycustom, gffGetmRNA.pl, gp2othergp.pl, gtf2aa.pl, gtf2gff.pl, gth2gtf.pl, hal2maf_split.pl, helpMod.pm, ipcress, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, load2sqlitedb, lp_solve, maf2conswig.pl, makeMatchLists.pl, makeUtrTrainingSet.pl, maskNregions.pl, merge_masking.pl, moveParameters.pl, msa2prfl.pl, new_species.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, peptides2alternatives.pl, peptides2hints.pl, phastconsDB2hints.pl, polyA2hints.pl, pp_simScore, prints2prfl.pl, pslMap.pl, randomSplit.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, samMap.pl, scipiogff2gff.pl, setStopCodonFreqs.pl, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, splitMfasta.pl, split_wiggle.pl, summarizeACGTcontent.pl, transMap2hints.pl, uniquePeptides.pl, utrgff2gbrowse.pl, utrrnaseq, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, yaml2gff.1.4.pl, augustus, bam2hints, etraining, fastBlockSearch, filterBam, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign, _aaindexextract |
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GITHUB
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quay.io/biocontainers/fgpyo |
singularity registry hpc automated addition for fgpyo |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/fgsv |
singularity registry hpc automated addition for fgsv |
fgsv, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap, jps |
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GITHUB
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quay.io/biocontainers/fgwas |
shpc-registry automated BioContainers addition for fgwas |
fgwas, test |
|
GITHUB
|
quay.io/biocontainers/fibertools-rs |
singularity registry hpc automated addition for fibertools-rs |
ft |
|
GITHUB
|
quay.io/biocontainers/ficus |
shpc-registry automated BioContainers addition for ficus |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc, tificc |
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GITHUB
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quay.io/biocontainers/fido |
shpc-registry automated BioContainers addition for fido |
Fido, FidoChooseParameters |
|
GITHUB
|
quay.io/biocontainers/figaro |
shpc-registry automated BioContainers addition for figaro |
figaro.py, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc |
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GITHUB
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quay.io/biocontainers/figtree |
shpc-registry automated BioContainers addition for figtree |
figtree, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
|
quay.io/biocontainers/fiji-max_inscribed_circles |
singularity registry hpc automated addition for fiji-max_inscribed_circles |
ImageJ, ImageJ_bin, bunwarpj, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap, jps |
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GITHUB
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quay.io/biocontainers/fiji-morpholibj |
singularity registry hpc automated addition for fiji-morpholibj |
ImageJ, bunwarpj, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs, pack200, rmic, rmid, unpack200, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo |
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GITHUB
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quay.io/biocontainers/fiji-omero_ij |
singularity registry hpc automated addition for fiji-omero_ij |
ImageJ, ImageJ_bin, bunwarpj, tjbench, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap |
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GITHUB
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quay.io/biocontainers/fiji-simple_omero_client |
singularity registry hpc automated addition for fiji-simple_omero_client |
ImageJ, ImageJ_bin, bunwarpj, tjbench, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap |
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GITHUB
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quay.io/biocontainers/filechunkio |
shpc-registry automated BioContainers addition for filechunkio |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/filesendercli |
singularity registry hpc automated addition for filesendercli |
filesender, idle3.13, pydoc3.13, python3.13, python3.13-config, normalizer |
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GITHUB
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quay.io/biocontainers/filtlong |
shpc-registry automated BioContainers addition for filtlong |
filtlong |
|
GITHUB
|
quay.io/biocontainers/find_circ |
singularity registry hpc automated addition for find_circ |
cmp_bed.py, find_circ.py, maxlength.py, merge_bed.py, unmapped2anchors.py, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
|
quay.io/biocontainers/find_differential_primers |
shpc-registry automated BioContainers addition for find_differential_primers |
_gdlib-config, find_differential_primers.py, long_seq_tm_test, ntdpal, oligotm, perl5.30.3, primer3_core, _bdftogd, _gd2copypal, _gd2togif, _gd2topng, _gdcmpgif, _gdparttopng, _gdtopng, _giftogd2, _pngtogd, _pngtogd2 |
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GITHUB
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quay.io/biocontainers/finemap |
singularity registry hpc automated addition for finemap |
finemap |
|
GITHUB
|
quay.io/biocontainers/fineradstructure |
shpc-registry automated BioContainers addition for fineradstructure |
RADpainter, finestructure |
|
GITHUB
|
quay.io/biocontainers/finestructure |
shpc-registry automated BioContainers addition for finestructure |
beagle2chromopainter.pl, chromopainter2chromopainterv2.pl, convertrecfile.pl, fs, impute2chromopainter.pl, makeuniformrecfile.pl, msms2cp.pl, phasescreen.pl, phasesubsample.pl, plink2chromopainter.pl, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/fingerprintscan |
shpc-registry automated BioContainers addition for fingerprintscan |
fingerPRINTScan |
|
GITHUB
|
quay.io/biocontainers/fings |
shpc-registry automated BioContainers addition for fings |
fings, vcf_sample_filter.py, vcf_filter.py, vcf_melt, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9 |
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GITHUB
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quay.io/biocontainers/fiona |
shpc-registry automated BioContainers addition for fiona |
epsg_tr.py, esri2wkt.py, fio, gcps2vec.py, gcps2wld.py, gdal2tiles.py, gdal2xyz.py, gdal_auth.py, gdal_calc.py, gdal_edit.py, gdal_fillnodata.py, gdal_merge.py, gdal_pansharpen.py, gdal_polygonize.py, gdal_proximity.py, gdal_retile.py, gdal_sieve.py, gdalchksum.py, gdalcompare.py, gdalident.py, gdalimport.py, gdalmove.py, gdalserver, mkgraticule.py, ogrmerge.py, pct2rgb.py, rgb2pct.py, testepsg, pg_standby, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums |
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GITHUB
|
quay.io/biocontainers/firecloud |
shpc-registry automated BioContainers addition for firecloud |
bq, docker-credential-gcloud, fissfc, gcloud, gsutil, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, chardetect, 2to3-3.9, idle3.9 |
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GITHUB
|
quay.io/biocontainers/fisher |
shpc-registry automated BioContainers addition for fisher |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/fishtaco |
shpc-registry automated BioContainers addition for fishtaco |
run_fishtaco.py, run_musicc.py, test_fishtaco.py, test_musicc.py, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5, wish8.5 |
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GITHUB
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quay.io/biocontainers/fit_nbinom |
shpc-registry automated BioContainers addition for fit_nbinom |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/fithic |
shpc-registry automated BioContainers addition for fithic |
fithic, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, opj_compress |
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GITHUB
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quay.io/biocontainers/fitter |
shpc-registry automated BioContainers addition for fitter |
fitter, browse, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp |
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GITHUB
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quay.io/biocontainers/flaimapper |
shpc-registry automated BioContainers addition for flaimapper |
flaimapper, sslm2sam, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/flair |
shpc-registry automated BioContainers addition for flair |
bam2Bed12, bed_to_psl, deFLAIR, diff_iso_usage, diffsplice_fishers_exact, flair, junctions_from_sam, mark_intron_retention, mark_productivity, normalize_counts_matrix, plot_isoform_usage, predictProductivity, psl_to_bed, psl_to_sequence, sam_to_map, minimap2.py, sdust, paftools.js, minimap2, k8, fonttools, pyftmerge, pyftsubset, ttx, tqdm |
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GITHUB
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quay.io/biocontainers/flams |
singularity registry hpc automated addition for flams |
FLAMS, test_pcre, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs |
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GITHUB
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quay.io/biocontainers/flanker |
shpc-registry automated BioContainers addition for flanker |
abricate, abricate-get_db, flanker, any2fasta, funzip, unzipsfx, zipgrep, zipinfo, unzip, capnp, capnpc, capnpc-c++, capnpc-capnp |
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GITHUB
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quay.io/biocontainers/flapjack |
shpc-registry automated BioContainers addition for flapjack |
flapjack, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/flash |
shpc-registry automated BioContainers addition for flash |
|
|
GITHUB
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quay.io/biocontainers/flash2 |
shpc-registry automated BioContainers addition for flash2 |
flash2 |
|
GITHUB
|
quay.io/biocontainers/flashlfq |
shpc-registry automated BioContainers addition for flashlfq |
FlashLFQ, lttng-gen-tp |
|
GITHUB
|
quay.io/biocontainers/flask-admin |
shpc-registry automated BioContainers addition for flask-admin |
flask, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
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quay.io/biocontainers/flask-basicauth |
shpc-registry automated BioContainers addition for flask-basicauth |
flask, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
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quay.io/biocontainers/flask-bootstrap |
shpc-registry automated BioContainers addition for flask-bootstrap |
flask, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
|
quay.io/biocontainers/flask-bower |
shpc-registry automated BioContainers addition for flask-bower |
flask, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/flask-markdown |
shpc-registry automated BioContainers addition for flask-markdown |
flask, easy_install-3.5, markdown_py, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config |
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GITHUB
|
quay.io/biocontainers/flask-nav |
shpc-registry automated BioContainers addition for flask-nav |
flask, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
|
quay.io/biocontainers/flask-potion |
shpc-registry automated BioContainers addition for flask-potion |
flask, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5 |
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GITHUB
|
quay.io/biocontainers/flask-script |
shpc-registry automated BioContainers addition for flask-script |
flask, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5 |
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GITHUB
|
quay.io/biocontainers/flask-sqlalchemy |
shpc-registry automated BioContainers addition for flask-sqlalchemy |
flask, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5 |
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GITHUB
|
quay.io/biocontainers/flexbar |
shpc-registry automated BioContainers addition for flexbar |
flexbar |
|
GITHUB
|
quay.io/biocontainers/flexi-formatter |
singularity registry hpc automated addition for flexi-formatter |
flexi_formatter, pileup.py, typer, annot-tsv, markdown-it, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, pygmentize, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl |
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GITHUB
|
quay.io/biocontainers/flexiformatter |
singularity registry hpc automated addition for flexiformatter |
flexiformatter, idle3.13, pileup.py, pydoc3.13, python3.13, python3.13-config, typer, annot-tsv, markdown-it, pygmentize, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim, wgsim_eval.pl, samtools |
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GITHUB
|
quay.io/biocontainers/flexiplex |
singularity registry hpc automated addition for flexiplex |
flexiplex, flexiplex-filter, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/flexserv |
singularity registry hpc automated addition for flexserv |
bd, diaghess, dmdgoopt, lorellnma, mc-eigen-mdweb.pl, mc-eigen.pl, nmanu.pl, pca_anim_mc.pl |
|
GITHUB
|
quay.io/biocontainers/flextaxd |
shpc-registry automated BioContainers addition for flextaxd |
flextaxd, flextaxd-create, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/flexynesis |
singularity registry hpc automated addition for flexynesis |
ase, ase-build, ase-db, ase-gui, ase-info, ase-run, community, debugpy, fabric, flexynesis, flexynesis-cli, lightning, papermill, pyaml, rav1e, torch_shm_manager, SvtAv1EncApp, dav1d, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, tiff2fsspec, aomdec, aomenc, protoc-25.3.0, tiffcomment, jupyter-execute, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, imageio_download_bin |
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GITHUB
|
quay.io/biocontainers/flight-genome |
shpc-registry automated BioContainers addition for flight-genome |
flight, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/flippyr |
shpc-registry automated BioContainers addition for flippyr |
flippyr, faidx, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/flock |
shpc-registry automated BioContainers addition for flock |
cent_adjust, flock1, flock2 |
|
GITHUB
|
quay.io/biocontainers/floria |
singularity registry hpc automated addition for floria |
floria, vartig-dump |
|
GITHUB
|
quay.io/biocontainers/flowcraft |
shpc-registry automated BioContainers addition for flowcraft |
flowcraft, nextflow, nextflow.bak, giffilter, gifsponge, gifecho, gifinto, basenc, b2sum, base32, base64, basename, cat |
|
GITHUB
|
quay.io/biocontainers/flumut |
singularity registry hpc automated addition for flumut |
flumut, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/flumutdb |
singularity registry hpc automated addition for flumutdb |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/flux-simulator |
shpc-registry automated BioContainers addition for flux-simulator |
flux-simulator, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/flye |
shpc-registry automated BioContainers addition for flye |
flye, flye-minimap2, flye-modules, flye-samtools, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/fmlrc |
shpc-registry automated BioContainers addition for fmlrc |
|
|
GITHUB
|
quay.io/biocontainers/fmlrc2 |
shpc-registry automated BioContainers addition for fmlrc2 |
fmlrc2, fmlrc2-convert, starcode |
|
GITHUB
|
quay.io/biocontainers/fmsi |
singularity registry hpc automated addition for fmsi |
fmsi |
|
GITHUB
|
quay.io/biocontainers/focus |
shpc-registry automated BioContainers addition for focus |
focus, focus_database_utils, funzip, unzipsfx, zipgrep, zipinfo, unzip, jellyfish, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10 |
|
GITHUB
|
quay.io/biocontainers/foldcomp |
singularity registry hpc automated addition for foldcomp |
foldcomp |
|
GITHUB
|
quay.io/biocontainers/foldmason |
singularity registry hpc automated addition for foldmason |
foldmason, aria2c, gawk-5.3.0, gawkbug, awk, gawk, idn2, wget |
|
GITHUB
|
quay.io/biocontainers/foldseek |
shpc-registry automated BioContainers addition for foldseek |
aria2c, foldseek, gawk-5.1.0, awk, gawk, idn2, wget, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/footprint |
shpc-registry automated BioContainers addition for footprint |
find_footprints.sh, gawk-5.1.0, awk, gawk, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam |
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GITHUB
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quay.io/biocontainers/forceatlas2-python |
shpc-registry automated BioContainers addition for forceatlas2-python |
appletviewer, idlj, orbd, schemagen, servertool, tnameserv, wsgen, wsimport, xjc, jaotc |
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GITHUB
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quay.io/biocontainers/forgi |
shpc-registry automated BioContainers addition for forgi |
compare_RNA.py, describe_cg.py, forgi_config.py, pseudoknot_analyzer.py, rnaConvert.py, visualize_rna.py, f2py3.6, futurize, pasteurize, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config |
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GITHUB
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quay.io/biocontainers/forked-path |
shpc-registry automated BioContainers addition for forked-path |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/forwardgenomics |
singularity registry hpc automated addition for forwardgenomics |
all_dists, base_evolve, chooseLines, clean_genes, consEntropy, convert_coords, display_rate_matrix, dless, dlessP, draw_tree, eval_predictions, exoniphy, f2py3.11, forwardGenomics.R, forwardGenomics_fullAnalysis.R, forwardGenomics_globalAnalysis.R, forwardGenomics_initialization.R, forwardGenomics_localAnalysis.R, hmm_train, hmm_tweak, hmm_view, indelFit, indelHistory, maf_parse, makeHKY, modFreqs, msa_diff, msa_split, msa_view, pbsDecode, pbsEncode, pbsScoreMatrix, pbsTrain, phast, phastBias, phastCons, phastMotif, phastOdds, phyloBoot, phyloFit, phyloP, prequel, refeature, stringiphy, treeGen, tree_doctor, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, glpsol, python3.1, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/fpa |
shpc-registry automated BioContainers addition for fpa |
fpa |
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GITHUB
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quay.io/biocontainers/fpocket |
shpc-registry automated BioContainers addition for fpocket |
dpocket, fpocket, mdpocket, tpocket, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
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GITHUB
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quay.io/biocontainers/fq |
shpc-registry automated BioContainers addition for fq |
fq |
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GITHUB
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quay.io/biocontainers/fqgrep |
singularity registry hpc automated addition for fqgrep |
fqgrep |
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GITHUB
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quay.io/biocontainers/fqtk |
singularity registry hpc automated addition for fqtk |
fqtk |
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GITHUB
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quay.io/biocontainers/fqtools |
shpc-registry automated BioContainers addition for fqtools |
fqtools, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/fqtrim |
shpc-registry automated BioContainers addition for fqtrim |
fqtrim, gtest, threads |
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GITHUB
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quay.io/biocontainers/fqzcomp |
shpc-registry automated BioContainers addition for fqzcomp |
fqz_comp |
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GITHUB
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quay.io/biocontainers/fragbuilder |
shpc-registry automated BioContainers addition for fragbuilder |
babel, obchiral, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop |
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GITHUB
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quay.io/biocontainers/fraggenescan |
shpc-registry automated BioContainers addition for fraggenescan |
FragGeneScan, run_FragGeneScan.pl, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/fragpipe |
singularity registry hpc automated addition for fragpipe |
csc-dim, fragpipe, ionquant, monograph, msfragger, nunit-console, nunit-console2, nunit-console4, philosopher, csc, csi, illinkanalyzer, vbc, mono-package-runtime, sgen-grep-binprot, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr, chktrust, crlupdate, csharp, dmcs, dtd2rng, dtd2xsd, gacutil, gacutil2, genxs, httpcfg, ikdasm |
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GITHUB
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quay.io/biocontainers/fraposa-pgsc |
singularity registry hpc automated addition for fraposa-pgsc |
fraposa, fraposa_plot, fraposa_pred, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/frc |
shpc-registry automated BioContainers addition for frc |
FRC, bamtools-2.4.0, bamtools, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
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quay.io/biocontainers/fred2 |
shpc-registry automated BioContainers addition for fred2 |
|
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GITHUB
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quay.io/biocontainers/freddie |
singularity registry hpc automated addition for freddie |
Annotation_Load.py, deBGA, deSALT, freddie_cluster.py, freddie_isoforms.py, freddie_segment.py, freddie_split.py, sdust, paftools.js, minimap2, k8, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/freebayes |
shpc-registry automated BioContainers addition for freebayes |
freebayes, freebayes-parallel, generate_freebayes_region_scripts.sh, bamleftalign, coverage_to_regions.py, fasta_generate_regions.py, vcffirstheader, vcfstreamsort, vcfuniq, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh |
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GITHUB
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quay.io/biocontainers/freyja |
shpc-registry automated BioContainers addition for freyja |
faToVcf, fido2-assert, fido2-cred, fido2-token, freyja, ivar, matOptimize, matUtils, ripples, scp, sftp, ssh, ssh-add, ssh-agent, ssh-keygen, ssh-keyscan, sshd, usher, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun |
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GITHUB
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quay.io/biocontainers/frogs |
shpc-registry automated BioContainers addition for frogs |
AbundanceStats, AlignmentTools, Clustering, FrameBot, KmerFilter, ProbeMatch, ReadSeq, SeqFilters, SequenceMatch, affiliation_OTU.py, affiliation_OTU_tpl.html, affiliation_filters.py, affiliation_filters_tpl.html, affiliation_postprocess.py, affiliations_stat.py, affiliations_stat_tpl.html, biom_to_stdBiom.py, biom_to_tsv.py, classifier, classifier.jar, clustering.py, clusters_stat.py, clusters_stat_tpl.html, demultiplex.py, deseq2_preprocess.py, deseq2_visualisation.Rmd, deseq2_visualisation.py, frogsfunc_copynumbers.py, frogsfunc_copynumbers_tpl.html, frogsfunc_functions.py, frogsfunc_functions_tpl.html, frogsfunc_pathways.py, frogsfunc_pathways_tpl.html, frogsfunc_placeseqs.py, frogsfunc_placeseqs_tpl.html, hmmgs, itsx.py, itsx_tpl.html, normalisation.py, normalisation_tpl.html, otu_filters.py, otu_filters_tpl.html, phyloseq_alpha_diversity.Rmd, phyloseq_alpha_diversity.py, phyloseq_beta_diversity.Rmd, phyloseq_beta_diversity.py, phyloseq_clustering.Rmd, phyloseq_clustering.py, phyloseq_composition.Rmd, phyloseq_composition.py, phyloseq_import_data.Rmd, phyloseq_import_data.py, phyloseq_manova.Rmd, phyloseq_manova.py, phyloseq_structure.Rmd, phyloseq_structure.py, preprocess.py, preprocess_tpl.html, remove_chimera.py, remove_chimera_tpl.html, tree.py, tree_tpl.html, tsv_to_biom.py, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
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GITHUB
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quay.io/biocontainers/fsa |
shpc-registry automated BioContainers addition for fsa |
fsa, gapcleaner, isect_mercator_alignment_gff, map_coords, map_gff_coords, percentid, prot2codon, slice_fasta, slice_fasta_gff, slice_mercator_alignment, translate |
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GITHUB
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quay.io/biocontainers/fseq |
shpc-registry automated BioContainers addition for fseq |
fseq, mapviewToBed.pl, perl5.22.0, c2ph, pstruct, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool |
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GITHUB
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quay.io/biocontainers/fsm-lite |
shpc-registry automated BioContainers addition for fsm-lite |
fsm-lite |
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GITHUB
|
quay.io/biocontainers/fsnviz |
shpc-registry automated BioContainers addition for fsnviz |
crimson, fsnviz, circos, circos.exe, compile.bat, compile.make, gddiag, list.modules, test.modules, bdf2gdfont.pl, bdftogd, gd2copypal |
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GITHUB
|
quay.io/biocontainers/ftputil |
shpc-registry automated BioContainers addition for ftputil |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/fuc |
shpc-registry automated BioContainers addition for fuc |
fuc, tabulate, natsort, xslt-config, xsltproc, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9 |
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GITHUB
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quay.io/biocontainers/fuma |
shpc-registry automated BioContainers addition for fuma |
chimerascan-exclude-transcriptome-events, chimerascan-relative-bedpe-to-CG, defuse-clusters-to-CG, fuma, fuma-gencode-gtf-to-bed, fuma-list-to-boolean-list, fusioncatcher-to-CG, htseq-count-barcodes, htseq-count, htseq-qa, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9 |
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GITHUB
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quay.io/biocontainers/funannotate |
shpc-registry automated BioContainers addition for funannotate |
CodingQuarry, CufflinksGTF_to_CodingQuarryGFF3.py, EukHighConfidenceFilter, PtR, SplicedAlignment.pm, TransDecoder.LongOrfs, TransDecoder.Predict, Trinity, TrinityStats.pl, Trinity_gene_splice_modeler.py, aa2nonred.pl, abundance_estimates_to_matrix.pl, align_and_estimate_abundance.pl, analyze_blastPlus_topHit_coverage.pl, analyze_diff_expr.pl, ann_exons_ens.pl, ann_exons_ncbi.pl, ann_exons_up_sql.pl, ann_exons_up_www.pl, ann_feats2ipr.pl, ann_feats2ipr_e.pl, ann_feats_up_sql.pl, ann_feats_up_www2.pl, ann_ipr_www.pl, ann_pdb_cath.pl, ann_pdb_vast.pl, ann_pfam27.pl, ann_pfam28.pl, ann_pfam30.pl, ann_pfam30_tmptbl.pl, ann_pfam_www.pl, ann_upfeats_pfam_www_e.pl, annot_blast_btop2.pl, atoiindex, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, autoRun.pathInfo, bam2wig, bamToWig.py, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, cdbfasta, cdbyank, cdna_alignment_orf_to_genome_orf.pl, cds-trainer.pl, cegma2gff.pl, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, cmetindex, color_defs.pl, compare_gos.py, compare_masking.pl, compileSpliceCands, computeFlankingRegion.pl, compute_base_probs.pl, contig_ExN50_statistic.pl, covels-SE, coves-SE, cpuid, createAugustusJoblist.pl, dbsnp_iit, define_clusters_by_cutting_tree.pl, del_from_prfl.pl, distro, ensembl_genes, esd2esi, espoca, eufindtRNA, evalCGP.pl, eval_dualdecomp.pl, eval_multi_gtf.pl, evidence_modeler.pl, exclude_similar_proteins.pl, exonerate, exonerate-server, exonerate2hints.pl, exoniphyDb2hints.pl, exonpairs, exp_up_ensg.pl, expand_links.pl, expand_uniref50.pl, extractTranscriptEnds.pl, extract_exons.py, extract_splice_sites.py, extract_supertranscript_from_reference.py, fa_coords, fasta, fasta2esd, fasta2gsi, fasta36, fasta_prot_checker.pl, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds, fastf36, fastm36, fasts36, fastx36, fasty36, fathom, fetch_associations.py, ffindex_resume.pl, filter-ppx.pl, filterGenes.pl, filterGenesIn.pl, filterGenesIn_mRNAname.pl, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, filter_low_expr_transcripts.pl, findGffNamesInFasta.pl, find_enrichment.py, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, forge, funannotate, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, gene_list_to_gff.pl, get-genome, getAnnoFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, getSeq, get_FL_accs.pl, get_Trinity_gene_to_trans_map.pl, get_longest_ORF_per_transcript.pl, get_top_longest_fasta_entries.pl, gff2gbSmallDNA.pl, gff2ps_mycustom, gff3_file_to_bed.pl, gff3_file_to_proteins.pl, gff3_gene_to_gtf_format.pl, gff3_genes, gff3_introns, gff3_splicesites, gffGetmRNA.pl, ggsearch36, glsearch36, gmap.nosimd, gmap.sse42, gmap_build, gmap_compress, gmap_process, gmap_reassemble, gmap_uncompress, gmapindex, gmapl, gmapl.nosimd, gmapl.sse42, go_plot.py, gp2othergp.pl, gsnap, gsnap.nosimd, gsnap.sse42, gsnapl, gsnapl.nosimd, gsnapl.sse42, gss-server, gtf2aa.pl, gtf2gff.pl, gtf_genes, gtf_genome_to_cdna_fasta.pl, gtf_introns, gtf_splicesites, gtf_to_alignment_gff3.pl, gtf_to_bed.pl, gtf_transcript_splicesites, gth2gtf.pl, gvf_iit, hal2maf_split.pl, helpMod.pm, hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, hmm-assembler.pl, hmm-info, iit_dump, iit_get, iit_store, insilico_read_normalization.pl, ipcress, iqtree2, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, kadmin.local, kadmind, kallisto, kdb5_util, kprop, kpropd, kproplog, krb5-send-pr, krb5kdc, lalign36, lav2plt.pl, lavplt_ps.pl, lavplt_svg.pl, lighttpd, lighttpd-angel, links2sql.pl, load2sqlitedb, lp_solve, m8_btop_msa.pl, m9B_btop_msa.pl, maf2conswig.pl, makeMatchLists.pl, makeUtrTrainingSet.pl, map_db, map_to_slim.py, maskNregions.pl, md_coords, merge_blast_btab.pl, merge_masking.pl, moveParameters.pl, msa2prfl.pl, ncbi_gene_results_to_python.py, new_species.pl, noncoding-trainer.pl, nr_ORFs_gff3.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, parse_m9.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, patch-hmm.pl, peptides2alternatives.pl, peptides2hints.pl, pfam_runner.pl, phastconsDB2hints.pl, phyml, phyml-mpi, phyrex, phytime, plot_go_term.py, pluginviewer, polyA2hints.pl, prepDE.py, prints2prfl.pl, proteinortho, proteinortho2html.pl, proteinortho2tree.pl, proteinortho2xml.pl, proteinortho6.pl, proteinortho_cleanupblastgraph, proteinortho_clustering, proteinortho_compareProteinorthoGraphs.pl, proteinortho_do_mcl.pl, proteinortho_extract_from_graph.pl, proteinortho_ffadj_mcs.py, proteinortho_formatUsearch.pl, proteinortho_grab_proteins.pl, proteinortho_graphMinusRemovegraph, proteinortho_history.pl, proteinortho_singletons.pl, proteinortho_summary.pl, proteinortho_treeBuilderCore, prt_terms.py, pslCDnaFilter, pslMap.pl, psl_genes, psl_introns, psl_splicesites, randomSplit.pl, ratewig.pl, refine_gff3_group_iso_strip_utrs.pl, refine_hexamer_scores.pl, remove_eclipsed_ORFs.pl, res2R.pl, retrieve_sequences_from_fasta.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, run_CQ-PM_mine.sh, run_CQ-PM_stranded.sh, run_CQ-PM_unstranded.sh, run_DE_analysis.pl, run_DE_analysis_from_samples_file.pl, samMap.pl, sam_sort, saslauthd, scipiogff2gff.pl, score_CDS_likelihood_all_6_frames.pl, select_best_ORFs_per_transcript.pl, seq_n_baseprobs_to_loglikelihood_vals.pl, seqtk-trinity, setStopCodonFreqs.pl, shuffle_embed.pl, sift_bam_max_cov.pl, sim_server, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, slclust, snap, snpindex, splitMfasta.pl, split_wiggle.pl, ssearch36, sserver, sstofa, start_codon_refinement.pl, stringtie, summ_domain_ident.pl, summarizeACGTcontent.pl, tRNAscan-SE, tRNAscan-SE.conf, tantan, testsaslauthd, tfastf36, tfastm36, tfasts36, tfastx36, tfasty36, train_start_PWM.pl, transMap2hints.pl, trnascan-1.4, uniqscan, uniqscanl, uniquePeptides.pl, uri_unescape.pl, utrgff2gbrowse.pl, utrrnaseq, uuserver, vcf_iit, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, wr_hier.py, wr_sections.py, writeResultsPage.pl, yaml2gff.1.4.pl, zff2gff3.pl, augustus, bam2hints, etraining, fastBlockSearch, filterBam, gmap, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign |
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GITHUB
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quay.io/biocontainers/funcannot |
shpc-registry automated BioContainers addition for funcannot |
funcannot, qdoc3, qmlviewer, qt3to4, qtconfig, qttracereplay, qhelpconverter, qdbus, qdbuscpp2xml, qdbusviewer, qdbusxml2cpp, xmlpatterns, xmlpatternsvalidator, assistant, designer, lconvert |
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GITHUB
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quay.io/biocontainers/functools32 |
shpc-registry automated BioContainers addition for functools32 |
smtpd.pyc, easy_install-2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5 |
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GITHUB
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quay.io/biocontainers/funnel |
shpc-registry automated BioContainers addition for funnel |
funnel |
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GITHUB
|
quay.io/biocontainers/fununifrac |
singularity registry hpc automated addition for fununifrac |
compute_edges.py, compute_fununifrac.py, create_edge_matrix.py, tjbench, numba, pycc, py.test, pytest, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
|
quay.io/biocontainers/fusepy |
shpc-registry automated BioContainers addition for fusepy |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/fusion-filter |
shpc-registry automated BioContainers addition for fusion-filter |
atoiindex, blast_and_promiscuity_filter.pl, blast_check_pair.pl, blast_filter.pl, blast_outfmt6_replace_trans_id_w_gene_symbol.pl, build_chr_gene_alignment_index.pl, build_fusion_annot_db_index.pl, build_prot_info_db.pl, cmetindex, cpuid, dbsnp_iit, ensembl_genes, fa_coords, gencode_extract_relevant_gtf_exons.pl, get-genome, gff3_genes, gff3_introns, gff3_splicesites, gmap.nosimd, gmap.sse42, gmap_build, gmap_cat, gmap_process, gmapindex, gmapl, gmapl.nosimd, gmapl.sse42, gsnap, gsnap.nosimd, gsnap.sse42, gsnapl, gsnapl.nosimd, gsnapl.sse42, gtf_file_to_feature_seqs.pl, gtf_genes, gtf_introns, gtf_splicesites, gtf_to_exon_gene_records.pl, gtf_to_gene_spans.pl, gtf_transcript_splicesites, gvf_iit, iit_dump, iit_get, iit_store, index_blast_pairs.pl, index_blast_pairs.remove_gene_pair.pl, index_blast_pairs.remove_overlapping_genes.pl, index_cdna_seqs.pl, index_pfam_domain_info.pl, indexdb_cat, isoform_blast_gene_chr_conversion.pl, isoform_blast_mapping_indexer.pl, just_blast_test.pl, make_super_locus.pl, md_coords, prep_genome_lib.pl, promiscuity_filter.pl, psl_genes, psl_introns, psl_splicesites, remove_long_intron_readthru_transcripts.pl, sam_sort, snpindex, trindex, vcf_iit, gmap, STAR, STARlong, blast_report, blastdb_convert, blastdb_path, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv |
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GITHUB
|
quay.io/biocontainers/fusion-inspector |
shpc-registry automated BioContainers addition for fusion-inspector |
FusionInspector, PtR, Trinity, TrinityStats.pl, Trinity_gene_splice_modeler.py, abundance_estimates_to_matrix.pl, align_and_estimate_abundance.pl, analyze_blastPlus_topHit_coverage.pl, analyze_diff_expr.pl, atoiindex, cmetindex, contig_ExN50_statistic.pl, cpuid, dbsnp_iit, define_clusters_by_cutting_tree.pl, ensembl_genes, extract_supertranscript_from_reference.py, fa_coords, filter_low_expr_transcripts.pl, get-genome, get_Trinity_gene_to_trans_map.pl, gff3_genes, gff3_introns, gff3_splicesites, gmap.sse42, gmap_build, gmap_compress, gmap_process, gmap_reassemble, gmap_uncompress, gmapindex, gmapl, gmapl.sse42, gsnap, gsnap.sse42, gsnapl, gsnapl.sse42, gtf_genes, gtf_introns, gtf_splicesites, gtf_transcript_splicesites, gvf_iit, iit_dump, iit_get, iit_store, insilico_read_normalization.pl, md_coords, psl_genes, psl_introns, psl_splicesites, retrieve_sequences_from_fasta.pl, run_DE_analysis.pl, run_DE_analysis_from_samples_file.pl, sam_sort, seqtk-trinity, sift_bam_max_cov.pl, snpindex, trindex, vcf_iit, gmap, salmon, STAR, STARlong, giffilter, gifsponge, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s |
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GITHUB
|
quay.io/biocontainers/fusion-report |
shpc-registry automated BioContainers addition for fusion-report |
fusion_report, tqdm, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/fusioncatcher-seqtk |
shpc-registry automated BioContainers addition for fusioncatcher-seqtk |
seqtk |
|
GITHUB
|
quay.io/biocontainers/fusioncatcher |
shpc-registry automated BioContainers addition for fusioncatcher |
|
|
GITHUB
|
quay.io/biocontainers/fwdpp |
shpc-registry automated BioContainers addition for fwdpp |
fwdppConfig |
|
GITHUB
|
quay.io/biocontainers/fwdpy |
shpc-registry automated BioContainers addition for fwdpy |
|
|
GITHUB
|
quay.io/biocontainers/fwdpy11 |
shpc-registry automated BioContainers addition for fwdpy11 |
tskit, numba, pycc, f2py3.6, jsonschema, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m |
|
GITHUB
|
quay.io/biocontainers/fxtract |
singularity registry hpc automated addition for fxtract |
fxtract |
|
GITHUB
|
quay.io/biocontainers/ga4ghmongo |
shpc-registry automated BioContainers addition for ga4ghmongo |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/gaas |
shpc-registry automated BioContainers addition for gaas |
bp_einfo, bp_genbank_ref_extractor, gaas_AGP2chromosome.pl, gaas_add_track.rb, gaas_apollo_track_helper.rb, gaas_augustus2grid.pl, gaas_augustus_create_hints.rb, gaas_bam2bigwig.sh, gaas_bam_to_wiggle.py, gaas_bed2wiggle.rb, gaas_bed_create_random_feature.pl, gaas_blastp2grid.pl, gaas_blat2grid.pl, gaas_build_template_WA_1_0_X.rb, gaas_cp_all_links.sh, gaas_create_annotation_project.pl, gaas_create_annotation_project.rb, gaas_create_delivery_dir.sh, gaas_create_preautomated_report.pl, gaas_cufflinks2hints.rb, gaas_embl2gb.pl, gaas_eugene2maker.rb, gaas_exonerate2grid.pl, gaas_fasta_bionano_filter_not_scaffolded_part.pl, gaas_fasta_checkProteins.pl, gaas_fasta_cleaner.pl, gaas_fasta_domain_extractor.pl, gaas_fasta_extractFaFromMultiFa.sh, gaas_fasta_extract_sequence_from_OG.pl, gaas_fasta_extract_sequence_from_id.pl, gaas_fasta_filter_by_size.pl, gaas_fasta_get_longestORF.pl, gaas_fasta_purify.pl, gaas_fasta_removeFromFasta1_intersection_withFasta2ID.pl, gaas_fasta_removeSeqFromIDlist.pl, gaas_fasta_splitMultFastaFile.sh, gaas_fasta_splitter.pl, gaas_fasta_statistics.pl, gaas_fastq_check_sync_pair1_pair2.pl, gaas_fastq_deinterleave_bash.pl, gaas_fastq_guessMyFormat.pl, gaas_fastq_interleave.py, gaas_fastq_pairfq_lite.pl, gaas_gb2embl.pl, gaas_info_BioPerlVersion.sh, gaas_info_find_perl_module.sh, gaas_install_WA_2_0_X.rb, gaas_interpro2grid.pl, gaas_junctions2hints.pl, gaas_lastz2grid.pl, gaas_maker_AEDmeanInGffFile.sh, gaas_maker_AEDplot.pl, gaas_maker_check_progress.sh, gaas_maker_check_progress_deeply.sh, gaas_maker_get_rid_of_contig.pl, gaas_maker_get_rm_genome.pl, gaas_maker_merge_outputs_from_datastore.pl, gaas_maker_merge_outputs_from_index.pl, gaas_maker_moveResultsSafely.sh, gaas_manage_backup.sh, gaas_manage_species.rb, gaas_multiplotAll.R, gaas_ncbi_get_genome_tree.pl, gaas_ncbi_get_reference_data.pl, gaas_ncbi_get_sequence_from_list.pl, gaas_new_species_WA_1_0_X.rb, gaas_orthomcl_analyzeOG.pl, gaas_pasa_create_chunks.rb, gaas_pasa_find_duplicates.rb, gaas_pfam2grid.pl, gaas_prep-contigs.sh, gaas_prepare_matrice_by_window.pl, gaas_protein2hints.rb, gaas_removeIsoforms.sh, gaas_reveal_hidden_characters.pl, gaas_rfam2apollo.rb, gaas_rfam2grid.pl, gaas_rs_PlotDensityAEDFromMakerAnnotationFiles.R, gaas_rs_PlotDensityOneRowPerFile.R, gaas_scaffold2AGP.pl, gaas_scipio2grid.pl, gaas_screen_mito_tblastn.pl, gaas_setup_rakefile.rb, gaas_snap_train.sh, gaas_sr_AllResu_AllIntervalPlotMean.R, gaas_sr_MadeGraphAndRegByInterval.R, gaas_sr_Mean2col_AllIntervalPlotMean.R, gaas_sr_Mean2col_PlotPoints.R, gaas_sr_Mean2col_PlotPointsAndRegs.R, gaas_sync_dat_and_embl.pl, gaas_sync_user_db.rb, gaas_synplot.R, gaas_synplot.pl, gaas_tblastn2grid.pl, gaas_transplant.rb, gaas_transposonPSI2grid.pl, gaas_trnascan2grid.pl, gaas_unlink_all.sh, gdlib-config, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml, basemlg, chi2, codeml, evolver |
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GITHUB
|
quay.io/biocontainers/gadem |
shpc-registry automated BioContainers addition for gadem |
gadem |
|
GITHUB
|
quay.io/biocontainers/gadma |
shpc-registry automated BioContainers addition for gadma |
demes, gadma, gadma-get_confidence_intervals, gadma-get_confidence_intervals_for_ld, gadma-precompute_ld_data, gadma-run_ls_on_boot_data, dask-scheduler, dask-ssh, dask-worker, bokeh, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.8 |
|
GITHUB
|
quay.io/biocontainers/gafpack |
singularity registry hpc automated addition for gafpack |
gafpack |
|
GITHUB
|
quay.io/biocontainers/gait-gm |
shpc-registry automated BioContainers addition for gait-gm |
add_group_rank.py, add_kegg_anno_info.py, add_kegg_pathway_info.py, add_pval_flags.py, all_by_all_correlation.py, anova_fixed.py, bland_altman_plot.py, blank_feature_filtering_flags.py, coefficient_variation_flags.py, compare_flags.py, compound_identification.py, data_normalization_and_rescaling.py, distribution_features.py, distribution_samples.py, ensembl2symbol.py, hierarchical_clustering_heatmap.py, imputation.py, kruskal_wallis.py, lasso_enet_var_select.py, linear_discriminant_analysis.py, log_and_glog_transformation.py, magnitude_difference_flags.py, mahalanobis_distance.py, merge_flags.py, modify_design_file.py, modulated_modularity_clustering.py, multiple_testing_adjustment.py, mzrt_match.py, partial_least_squares.py, principal_component_analysis.py, random_forest.py, remove_selected_features_samples.py, remove_user_specified_row_col.py, retention_time_flags.py, run_order_regression.py, sPLS.py, scatter_plot_2D.py, scatter_plot_3D.py, split_wide_dataset.py, standardized_euclidean_distance.py, subset_data.py, summarize_flags.py, svm_classifier.py, tab-to-vcf, threshold_based_flags.py, ttest.py, ttest_perm.py, ttest_single_group.py, vcf-haplotypes, fill-aa, fill-an-ac, fill-fs, fill-ref-md5, vcf-annotate, vcf-compare, vcf-concat, vcf-consensus, vcf-contrast, vcf-convert |
|
GITHUB
|
quay.io/biocontainers/galah |
shpc-registry automated BioContainers addition for galah |
dashing, galah, fastANI, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/galaxy-containers |
shpc-registry automated BioContainers addition for galaxy-containers |
cheetah, cheetah-analyze, cheetah-compile, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py, rst2xetex.py |
|
GITHUB
|
quay.io/biocontainers/galaxy-data |
shpc-registry automated BioContainers addition for galaxy-data |
bagit.py, bagit_profile.py, bdbag, bdbag-utils, cheetah, cheetah-analyze, cheetah-compile, galaxy-build-objects, galaxy-manage-db, gx-fastq-combiner, gx-fastq-filter, gx-fastq-groomer, gx-fastq-manipulation, gx-fastq-masker-by-quality, gx-fastq-paired-end-deinterlacer, gx-fastq-paired-end-interlacer, gx-fastq-paired-end-joiner, gx-fastq-paired-end-splitter, gx-fastq-stats, gx-fastq-to-fasta, gx-fastq-to-tabular, gx-fastq-trimmer, gx-fastq-trimmer-by-quality, migrate, migrate-repository, sqlformat, pbr, docutils, pybabel, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py |
|
GITHUB
|
quay.io/biocontainers/galaxy-files |
singularity registry hpc automated addition for galaxy-files |
cheetah, cheetah-analyze, cheetah-compile, docutils, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py, rst2xetex.py, rst2xml.py, rstpep2html.py, futurize, pasteurize, normalizer, python3.1 |
|
GITHUB
|
quay.io/biocontainers/galaxy-ie-helpers |
shpc-registry automated BioContainers addition for galaxy-ie-helpers |
get, get_user_history, put, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier |
|
GITHUB
|
quay.io/biocontainers/galaxy-ml |
shpc-registry automated BioContainers addition for galaxy-ml |
flatc, import_pb_to_tensorboard, xgboost, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, pyrsa-decrypt |
|
GITHUB
|
quay.io/biocontainers/galaxy-objectstore |
shpc-registry automated BioContainers addition for galaxy-objectstore |
cheetah, cheetah-analyze, cheetah-compile, docutils, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py |
|
GITHUB
|
quay.io/biocontainers/galaxy-ops |
shpc-registry automated BioContainers addition for galaxy-ops |
aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
|
GITHUB
|
quay.io/biocontainers/galaxy-parsec |
shpc-registry automated BioContainers addition for galaxy-parsec |
bioblend-galaxy-tests, parsec, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier |
|
GITHUB
|
quay.io/biocontainers/galaxy-schema |
singularity registry hpc automated addition for galaxy-schema |
cheetah, cheetah-analyze, cheetah-compile, email_validator, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex, rst2xml, docutils, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, futurize, pasteurize, normalizer |
|
GITHUB
|
quay.io/biocontainers/galaxy-tool-util |
shpc-registry automated BioContainers addition for galaxy-tool-util |
cheetah, cheetah-analyze, cheetah-compile, galaxy-tool-test, mulled-build, mulled-build-channel, mulled-build-files, mulled-build-tool, mulled-list, mulled-search, mulled-update-singularity-containers, conda-env, cph, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py |
|
GITHUB
|
quay.io/biocontainers/galaxy-upload |
shpc-registry automated BioContainers addition for galaxy-upload |
bioblend-galaxy-tests, galaxy-history-search, galaxy-upload, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier |
|
GITHUB
|
quay.io/biocontainers/galaxy-util |
shpc-registry automated BioContainers addition for galaxy-util |
cheetah, cheetah-analyze, cheetah-compile, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py, rst2xetex.py |
|
GITHUB
|
quay.io/biocontainers/galaxy-workflow-executor |
shpc-registry automated BioContainers addition for galaxy-workflow-executor |
bioblend-galaxy-tests, generate_params_from_workflow.py, run_galaxy_workflow.py, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier |
|
GITHUB
|
quay.io/biocontainers/galaxy_sequence_utils |
shpc-registry automated BioContainers addition for galaxy_sequence_utils |
gx-fastq-combiner, gx-fastq-filter, gx-fastq-groomer, gx-fastq-manipulation, gx-fastq-masker-by-quality, gx-fastq-paired-end-deinterlacer, gx-fastq-paired-end-interlacer, gx-fastq-paired-end-joiner, gx-fastq-paired-end-splitter, gx-fastq-stats, gx-fastq-to-fasta, gx-fastq-to-tabular, gx-fastq-trimmer, gx-fastq-trimmer-by-quality, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/galaxyxml |
shpc-registry automated BioContainers addition for galaxyxml |
futurize, pasteurize, xslt-config, xsltproc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/galitime |
singularity registry hpc automated addition for galitime |
galitime, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/galru |
shpc-registry automated BioContainers addition for galru |
galru, galru_create_database, galru_create_species, galru_shrink_database, mlst, ncbi-genome-download, ngd, any2fasta, fastaq, minced, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl |
|
GITHUB
|
quay.io/biocontainers/gambit |
singularity registry hpc automated addition for gambit |
alembic, gambit, mako-render, f2py3.9, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp, h5perf_serial, h5redeploy, h5repack, h5repart, h5stat, h5unjam, h5dump, h5cc, 2to3-3.9 |
|
GITHUB
|
quay.io/biocontainers/gametes |
singularity registry hpc automated addition for gametes |
gametes, jwebserver, pcre2posix_test, jpackage, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, cups-config, ippeveprinter, ipptool, hb-info, tjbench, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java |
|
GITHUB
|
quay.io/biocontainers/gamma |
shpc-registry automated BioContainers addition for gamma |
GAMMA-S.py, GAMMA.py, faToNib, gfClient, gfServer, nibFrag, pslPretty, pslReps, pslSort, twoBitToFa, blat, unidecode, twoBitInfo, faToTwoBit, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1 |
|
GITHUB
|
quay.io/biocontainers/gangstr |
shpc-registry automated BioContainers addition for gangstr |
GangSTR, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/ganon |
shpc-registry automated BioContainers addition for ganon |
binpacking, ganon, ganon-build, ganon-classify, ganon-get-seq-info.sh, taxsbp, egrep, fgrep, grep, tar, gawk-5.1.0, basenc, b2sum, awk, base32, base64 |
|
GITHUB
|
quay.io/biocontainers/gap |
shpc-registry automated BioContainers addition for gap |
|
|
GITHUB
|
quay.io/biocontainers/gap2seq |
shpc-registry automated BioContainers addition for gap2seq |
Gap2Seq, Gap2Seq-core, GapCutter, GapMerger, ReadFilter, htsfile, bgzip, tabix, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/gapfiller |
shpc-registry automated BioContainers addition for gapfiller |
GapFiller |
|
GITHUB
|
quay.io/biocontainers/gapless |
singularity registry hpc automated addition for gapless |
f2py3.11, gapless.py, gapless.sh, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/gapmm2 |
singularity registry hpc automated addition for gapmm2 |
gapmm2, minimap2.py, natsort, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/gappa |
shpc-registry automated BioContainers addition for gappa |
gappa |
|
GITHUB
|
quay.io/biocontainers/gapseq |
singularity registry hpc automated addition for gapseq |
gapseq, install_archived_sybilSBML.sh, update_sequences.sh, esd2esi, exonerate, exonerate-server, fasta2esd, fastaannotatecdna, fastachecksum, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasubseq, fastatranslate, fastavalidcds, ipcress |
|
GITHUB
|
quay.io/biocontainers/gargammel-slim |
shpc-registry automated BioContainers addition for gargammel-slim |
adptSim, deamSim, fragSim |
|
GITHUB
|
quay.io/biocontainers/gargammel |
shpc-registry automated BioContainers addition for gargammel |
|
|
GITHUB
|
quay.io/biocontainers/garnet |
shpc-registry automated BioContainers addition for garnet |
easy_install-3.6, qhelpconverter, pylupdate5, pyrcc5, pyuic5, sip, qdoc, gst-device-monitor-1.0, gst-discoverer-1.0, gst-play-1.0 |
|
GITHUB
|
quay.io/biocontainers/garnett-cli |
shpc-registry automated BioContainers addition for garnett-cli |
garnett_check_markers.R, garnett_classify_cells.R, garnett_cli_post_install_tests.bats, garnett_cli_post_install_tests.sh, garnett_get_feature_genes.R, garnett_train_classifier.R, make_test_data.R, parse_expr_data.R, build_env_setup.sh, conda_build.sh, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/gassst |
singularity registry hpc automated addition for gassst |
Gassst |
|
GITHUB
|
quay.io/biocontainers/gat |
shpc-registry automated BioContainers addition for gat |
gat-compare.py, gat-great.py, gat-plot.py, gat-run.py, msgattrib, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, qwebengine_convert_dict |
|
GITHUB
|
quay.io/biocontainers/gatb |
shpc-registry automated BioContainers addition for gatb |
dbgh5, dbginfo, leon, mirror_server, mirror_server_stop, f2py3.10, h5clear, h5format_convert, h5watch, h5fc, 2to3-3.10, idle3.10, pydoc3.10 |
|
GITHUB
|
quay.io/biocontainers/gatk-framework |
shpc-registry automated BioContainers addition for gatk-framework |
gatk-framework, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/gatk |
shpc-registry automated BioContainers addition for gatk |
|
|
GITHUB
|
quay.io/biocontainers/gatk4-spark |
shpc-registry automated BioContainers addition for gatk4-spark |
gatk, x86_64-conda_cos7-linux-gnu-ld, cups-config, ippeveprinter, ipptool, jfr, jaotc, aserver, jdeprscan, jhsdb |
|
GITHUB
|
quay.io/biocontainers/gatk4 |
shpc-registry automated BioContainers addition for gatk4 |
gatk |
|
GITHUB
|
quay.io/biocontainers/gatktool |
shpc-registry automated BioContainers addition for gatktool |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/gawk |
shpc-registry automated BioContainers addition for gawk |
gawk, gawk-5.1.0, awk |
|
GITHUB
|
quay.io/biocontainers/gb-io |
singularity registry hpc automated addition for gb-io |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/gb_taxonomy_tools |
shpc-registry automated BioContainers addition for gb_taxonomy_tools |
gid-taxid, taxonomy-reader, taxonomy2tree, tree2ps |
|
GITHUB
|
quay.io/biocontainers/gbintk |
singularity registry hpc automated addition for gbintk |
combine_cov, gbintk, graphbin, graphbin2, metacoag, prepResult, FragGeneScan, run_FragGeneScan.pl, pbr, igraph, numpy-config, x86_64-conda-linux-gnu-pkg-config, pkg-config, pkg-config.bin, tabulate, numba, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask |
|
GITHUB
|
quay.io/biocontainers/gbkviz |
singularity registry hpc automated addition for gbkviz |
base58, csv-import, delta2vcf, elasticurl, elasticurl_cpp, elastipubsub, gbkviz_webapp, orc-memory, orc-scan, pysemver, streamlit, streamlit.cmd, timezone-dump, watchmedo, jupyter-execute, jupyter-dejavu, send2trash, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run |
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GITHUB
|
quay.io/biocontainers/gblocks |
shpc-registry automated BioContainers addition for gblocks |
Gblocks |
|
GITHUB
|
quay.io/biocontainers/gbmunge |
shpc-registry automated BioContainers addition for gbmunge |
gbmunge |
|
GITHUB
|
quay.io/biocontainers/gbsx |
shpc-registry automated BioContainers addition for gbsx |
gbsx, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/gc-meox-tms |
singularity registry hpc automated addition for gc-meox-tms |
fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/gcen |
shpc-registry automated BioContainers addition for gcen |
calculate_accuracy, csv_to_tsv, data_filter, data_norm, data_stat, enrich, generate_expr_matrix_from_rsem, generate_expr_matrix_from_stringtie, module_identify, network_build, network_extract, network_merge, network_shuffle, network_stat, rwr, tsv_to_csv, annotate |
|
GITHUB
|
quay.io/biocontainers/gclib |
shpc-registry automated BioContainers addition for gclib |
gtest, threads |
|
GITHUB
|
quay.io/biocontainers/gcluster |
shpc-registry automated BioContainers addition for gcluster |
Gcluster.pl, interested_gene_generation.pl, test.pl, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray, mcxassemble |
|
GITHUB
|
quay.io/biocontainers/gcnvkernel |
shpc-registry automated BioContainers addition for gcnvkernel |
theano-cache, theano-nose, mako-render, compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, f2py3.6, certutil |
|
GITHUB
|
quay.io/biocontainers/gcs-oauth2-boto-plugin |
shpc-registry automated BioContainers addition for gcs-oauth2-boto-plugin |
pyrsa-decrypt-bigfile, pyrsa-encrypt-bigfile, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin |
|
GITHUB
|
quay.io/biocontainers/gcta |
shpc-registry automated BioContainers addition for gcta |
gcta64 |
|
GITHUB
|
quay.io/biocontainers/gctb |
singularity registry hpc automated addition for gctb |
gctb |
|
GITHUB
|
quay.io/biocontainers/gdal |
shpc-registry automated BioContainers addition for gdal |
epsg_tr.py, esri2wkt.py, gcps2vec.py, gcps2wld.py, gdal-config, gdal2tiles.py, gdal2xyz.py, gdal_auth.py, gdal_calc.py, gdal_contour, gdal_edit.py, gdal_fillnodata.py, gdal_grid, gdal_merge.py, gdal_pansharpen.py, gdal_polygonize.py, gdal_proximity.py, gdal_rasterize, gdal_retile.py, gdal_sieve.py, gdal_translate, gdaladdo, gdalbuildvrt, gdalchksum.py, gdalcompare.py, gdaldem, gdalenhance, gdalident.py, gdalimport.py, gdalinfo, gdallocationinfo, gdalmanage, gdalmove.py, gdalserver, gdalsrsinfo, gdaltindex, gdaltransform, gdalwarp, mkgraticule.py, nad2bin, ogrmerge.py, pct2rgb.py, rgb2pct.py, testepsg, pg_standby, conv-template, from-template, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo |
|
GITHUB
|
quay.io/biocontainers/gdc-client |
shpc-registry automated BioContainers addition for gdc-client |
gdc-client, ndg_httpclient, jsonschema, xslt-config, xsltproc, chardetect, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
|
GITHUB
|
quay.io/biocontainers/gdc |
shpc-registry automated BioContainers addition for gdc |
|
|
GITHUB
|
quay.io/biocontainers/gdk-pixbuf |
shpc-registry automated BioContainers addition for gdk-pixbuf |
gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner |
|
GITHUB
|
quay.io/biocontainers/gdmicro |
singularity registry hpc automated addition for gdmicro |
gdmicro, matplotlib, torchrun, ninja, convert-caffe2-to-onnx, convert-onnx-to-caffe2, iptest3, iptest, ipython3, ipython, protoc, pygmentize, f2py3.7, pandoc, fonttools, pyftmerge, pyftsubset, ttx, brotli, 2to3-3.7, idle3.7, pydoc3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, python3.7 |
|
GITHUB
|
quay.io/biocontainers/gdsctools |
shpc-registry automated BioContainers addition for gdsctools |
gdsctools_anova, gdsctools_regression, easydev_buildPackage, ibrowse, multigit, browse, runxlrd.py, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel |
|
GITHUB
|
quay.io/biocontainers/gecco |
shpc-registry automated BioContainers addition for gecco |
gecco, pyrodigal, cmark, tabulate, pygmentize, tqdm, futurize, pasteurize, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10 |
|
GITHUB
|
quay.io/biocontainers/gecko |
shpc-registry automated BioContainers addition for gecko |
FragHits, allVsAll.sh, combineFrags, comparison.sh, csvExtractBorders, csvFrags2text, dictionary.sh, filterFrags, filterHits, fragStat, frags2align.sh, frags2borders.sh, frags2text, getInfo, hdStat, hits, hitsStat, indexmaker, matrix.mat, reverseComplement, sortHits, sortWords, w2hd, words, wordsStat, workflow.sh |
|
GITHUB
|
quay.io/biocontainers/geco2 |
shpc-registry automated BioContainers addition for geco2 |
GeCo2, GeDe2 |
|
GITHUB
|
quay.io/biocontainers/geco3 |
shpc-registry automated BioContainers addition for geco3 |
GeCo3, GeDe3 |
|
GITHUB
|
quay.io/biocontainers/gecode |
shpc-registry automated BioContainers addition for gecode |
all-interval, alpha, bacp, bibd, bin-packing, black-hole, car-sequencing, cartesian-heart, colored-matrix, crew, crossword, crowded-chess, descartes-folium, dominating-queens, domino, donald, efpa, eq20, fzn-gecode, golf, golomb-ruler, graph-color, grocery, hamming, ind-set, job-shop, kakuro, knights, langford-number, magic-sequence, magic-square, minesweeper, money, multi-bin-packing, mzn-gecode, nonogram, open-shop, ortho-latin, partition, pentominoes, perfect-square, photo, qcp, queen-armies, queens, radiotherapy, sat, schurs-lemma, sports-league, steel-mill, steiner, sudoku, sudoku-advanced, tsp, warehouses, word-square |
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GITHUB
|
quay.io/biocontainers/gefast |
shpc-registry automated BioContainers addition for gefast |
GeFaST |
|
GITHUB
|
quay.io/biocontainers/gem3-mapper |
shpc-registry automated BioContainers addition for gem3-mapper |
gem-indexer, gem-mapper, gem-retriever |
|
GITHUB
|
quay.io/biocontainers/gembs |
shpc-registry automated BioContainers addition for gembs |
bs_call, dbSNP_idx, gem-indexer, gem-mapper, gem-retriever, gemBS, wigToBigWig, bedToBigBed, get_objgraph, gff2gff.py, undill, pigz, unpigz, my_print_defaults, mysql_config, perror |
|
GITHUB
|
quay.io/biocontainers/gemf_favites |
singularity registry hpc automated addition for gemf_favites |
GEMF, GEMF_FAVITES.py, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/gemini |
shpc-registry automated BioContainers addition for gemini |
bottle.py, dask-mpi, dask-remote, dask-submit, gemini, grabix, ipcluster, ipcontroller, ipengine, iptest2, ipython2, unidecode, cyvcf2, dask-scheduler, dask-ssh, dask-worker, jupyter-kernel, jupyter-kernelspec, jupyter-run, aggregate_scores_in_intervals.py, align_print_template.py |
|
GITHUB
|
quay.io/biocontainers/gemma |
shpc-registry automated BioContainers addition for gemma |
gemma |
|
GITHUB
|
quay.io/biocontainers/gemoma |
shpc-registry automated BioContainers addition for gemoma |
GeMoMa, mmseqs, gawk-5.1.0, CA.pm, awk, cacert.pem, gawk, index-themes, fetch-extras, go.mod, go.sum |
|
GITHUB
|
quay.io/biocontainers/gempipe |
singularity registry hpc automated addition for gempipe |
PF00225_full.blocks.txt, PF00225_seed.blocks.txt, add_name_to_gff3.pl, aln2wig, augustify.py, bloomfilterparser.sh, bsmp2info, busco, create_dbs.py, depinfo, download_eggnog_data.py, emapper.py, executeTestCGP.py, extractAnno.py, findRepetitiveProtSeqs.py, fsa2xml, gbf2info, gempipe, generate_plot.py, get_loci_from_gb.pl, gimme_taxa.py, hmm_mapper.py, hmm_server.py, hmm_worker.py, just-top-hits, metaeuk, miniprot, ncbi-genome-download, ngd, pp_simScore, rename_species.pl, run-sepp.sh, run_abundance.py, run_sepp.py, run_tipp.py, run_tipp_tool.py, run_upp.py, seppJsonMerger.jar, split_sequences.py, stringtie2fa.py, systematic-mutations, bamToWig.py, compare_masking.pl, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, merge_masking.pl, Xcalcmem.sh, aa2nonred.pl, cdbfasta, cdbyank, compileSpliceCands, computeFlankingRegion.pl, eval_multi_gtf.pl, filterGenesIn.pl, findGffNamesInFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, gtf2aa.pl, gth2gtf.pl, setStopCodonFreqs.pl, tbl2asn-test, utrrnaseq, hmmc2, hmmerfm-exactmatch, SplicedAlignment.pm, augustus2browser.pl |
|
GITHUB
|
quay.io/biocontainers/genbank_to |
singularity registry hpc automated addition for genbank_to |
genbank_to, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py, bed_count_overlapping.py, bed_coverage.py, bed_coverage_by_interval.py, bed_diff_basewise_summary.py, bed_extend_to.py, bed_intersect.py, bed_intersect_basewise.py, bed_merge_overlapping.py, bed_rand_intersect.py, bed_subtract_basewise.py, bnMapper.py, div_snp_table_chr.py, find_in_sorted_file.py, gene_fourfold_sites.py, get_scores_in_intervals.py |
|
GITHUB
|
quay.io/biocontainers/genblastg |
shpc-registry automated BioContainers addition for genblastg |
genblastG, test_pcre, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, seedtop, blast_formatter, blastdb_aliastool, blastdbcheck, blastdbcmd |
|
GITHUB
|
quay.io/biocontainers/genclust |
shpc-registry automated BioContainers addition for genclust |
genclust |
|
GITHUB
|
quay.io/biocontainers/gencore |
shpc-registry automated BioContainers addition for gencore |
gencore, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/gencove |
singularity registry hpc automated addition for gencove |
gencove, jp.py, py.test, pytest, normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/gene-trajectory-python |
singularity registry hpc automated addition for gene-trajectory-python |
qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, igraph, h5tools_test_utils, scanpy, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, h5delete |
|
GITHUB
|
quay.io/biocontainers/genefuse |
shpc-registry automated BioContainers addition for genefuse |
genefuse |
|
GITHUB
|
quay.io/biocontainers/geneimpacts |
shpc-registry automated BioContainers addition for geneimpacts |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/genenotebook |
shpc-registry automated BioContainers addition for genenotebook |
genenotebook, install_compass, mongo, mongod, mongos, node, npm, npx, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides |
|
GITHUB
|
quay.io/biocontainers/genepender |
shpc-registry automated BioContainers addition for genepender |
genepender, qdoc3, qmlviewer, qt3to4, qtconfig, qttracereplay, qhelpconverter, qdbus, qdbuscpp2xml, qdbusviewer, qdbusxml2cpp, xmlpatterns, xmlpatternsvalidator, assistant, designer, lconvert |
|
GITHUB
|
quay.io/biocontainers/genepop |
shpc-registry automated BioContainers addition for genepop |
Genepop |
|
GITHUB
|
quay.io/biocontainers/generax |
shpc-registry automated BioContainers addition for generax |
generax, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun |
|
GITHUB
|
quay.io/biocontainers/genericrepeatfinder |
shpc-registry automated BioContainers addition for genericrepeatfinder |
grf-alignment, grf-alignment2, grf-dbn, grf-filter, grf-intersperse, grf-main, grf-mite-cluster, grf-nest, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div, cd-hit-div.pl |
|
GITHUB
|
quay.io/biocontainers/genesplicer |
shpc-registry automated BioContainers addition for genesplicer |
genesplicer |
|
GITHUB
|
quay.io/biocontainers/genewalk |
shpc-registry automated BioContainers addition for genewalk |
compare_gos.py, fetch_associations.py, find_enrichment.py, genewalk, go_plot.py, map_to_slim.py, ncbi_gene_results_to_python.py, plot_go_term.py, prt_terms.py, wr_hier.py, wr_sections.py, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier |
|
GITHUB
|
quay.io/biocontainers/genie |
shpc-registry automated BioContainers addition for genie |
bolt, genie |
|
GITHUB
|
quay.io/biocontainers/genion |
singularity registry hpc automated addition for genion |
genion |
|
GITHUB
|
quay.io/biocontainers/genmap |
shpc-registry automated BioContainers addition for genmap |
genmap |
|
GITHUB
|
quay.io/biocontainers/genmod |
shpc-registry automated BioContainers addition for genmod |
genmod, ped_parser, py.test, pytest, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/geno2phenotb |
singularity registry hpc automated addition for geno2phenotb |
GenomeAnalysisTK, MTBseq, gatk3, geno2phenotb, picard, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd, schemagen, servertool, tnameserv, wsgen, wsimport, xjc, qualfa2fq.pl, xa2multi.pl, bwa, f2py3.7, jfr, 2to3-3.7 |
|
GITHUB
|
quay.io/biocontainers/genoboo |
singularity registry hpc automated addition for genoboo |
genoboo, meteor, mongo, mongod, mongos, node, npm, npx, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl, sort-table, spdi2tbl, split-at-intron, tbl2xml, transmute.Linux, xml2fsa |
|
GITHUB
|
quay.io/biocontainers/genodsp |
singularity registry hpc automated addition for genodsp |
genodsp |
|
GITHUB
|
quay.io/biocontainers/genoflu |
singularity registry hpc automated addition for genoflu |
genoflu.py, test_pcre, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs |
|
GITHUB
|
quay.io/biocontainers/genologics |
shpc-registry automated BioContainers addition for genologics |
chardetect, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/genomad |
singularity registry hpc automated addition for genomad |
aria2c, flatc, genomad, h5delete, import_pb_to_tensorboard, markdown-it, prodigal-gv, rich-click, aec, mmseqs, xgboost, estimator_ckpt_converter, aragorn, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2, gawk-5.1.0, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, awk, gawk, numba, pycc, pyrsa-decrypt |
|
GITHUB
|
quay.io/biocontainers/genome_updater |
shpc-registry automated BioContainers addition for genome_updater |
genome_updater.sh, bc, dc, tar, gawk-5.1.0, basenc, b2sum, awk, base32, base64, basename |
|
GITHUB
|
quay.io/biocontainers/genomebaser |
shpc-registry automated BioContainers addition for genomebaser |
GenomeBaser, sample, easy_install-2.7, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5 |
|
GITHUB
|
quay.io/biocontainers/genomeconstellation |
shpc-registry automated BioContainers addition for genomeconstellation |
jgi_gc |
|
GITHUB
|
quay.io/biocontainers/genomedata |
shpc-registry automated BioContainers addition for genomedata |
bigWigToBedGraph, filter, genomedata-close-data, genomedata-erase-data, genomedata-hardmask, genomedata-histogram, genomedata-info, genomedata-load, genomedata-load-assembly, genomedata-load-data, genomedata-load-seq, genomedata-open-data, genomedata-query, genomedata-report, hidehead, innerjoin, intersect, mean, nohead, run_genomedata_tests.py, test_genomedata.py, pt2to3, ptdump, ptrepack, pttree, my_print_defaults, mysql_config, perror, mirror_server, mirror_server_stop, shiftBed |
|
GITHUB
|
quay.io/biocontainers/genomelake |
shpc-registry automated BioContainers addition for genomelake |
dask-remote, dask-submit, dask-scheduler, dask-ssh, dask-worker, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py |
|
GITHUB
|
quay.io/biocontainers/genomepy |
shpc-registry automated BioContainers addition for genomepy |
|
|
GITHUB
|
quay.io/biocontainers/genomescope2 |
shpc-registry automated BioContainers addition for genomescope2 |
genomescope2, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/genomestrip |
shpc-registry automated BioContainers addition for genomestrip |
genomestrip, fasta-sanitize.pl, plot-ampliconstats, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod |
|
GITHUB
|
quay.io/biocontainers/genometester4 |
shpc-registry automated BioContainers addition for genometester4 |
glistcompare, glistmaker, glistquery, gmer_caller, gmer_counter |
|
GITHUB
|
quay.io/biocontainers/genomethreader |
shpc-registry automated BioContainers addition for genomethreader |
gth, gthclean.sh, gthcleanrec.sh, gthconsensus, gthfilestat, gthgetseq, gthsplit, gthsplit2dim.sh |
|
GITHUB
|
quay.io/biocontainers/genometools-genometools |
shpc-registry automated BioContainers addition for genometools-genometools |
genometools-config, gt, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/genometools |
shpc-registry automated BioContainers addition for genometools |
|
|
GITHUB
|
quay.io/biocontainers/genometreetk |
shpc-registry automated BioContainers addition for genometreetk |
_ssu-align, _ssu-build, _ssu-draw, _ssu-mask, _ssu-merge, _ssu-prep, abi-dump.2.10.8, align-cache.2.10.8, align-info.2.10.8, bam-load.2.10.8, cache-mgr.2.10.8, cg-load.2.10.8, fasterq-dump-orig.2.10.8, fasterq-dump.2.10.8, fastq-dump-orig.2.10.8, fastq-dump.2.10.8, genometreetk, illumina-dump.2.10.8, kar.2.10.8, kdbmeta.2.10.8, kget.2.10.8, latf-load.2.10.8, md5cp.2.10.8, mothur, prefetch-orig.2.10.8, prefetch.2.10.8, rcexplain.2.10.8, read-filter-redact.2.10.8, sam-dump-orig.2.10.8, sam-dump.2.10.8, sff-dump.2.10.8, sra-pileup-orig.2.10.8, sra-pileup.2.10.8, sra-sort-cg.2.10.8, sra-sort.2.10.8, sra-stat.2.10.8, srapath-orig.2.10.8, srapath.2.10.8, sratools.2.10.8, ssu-align, ssu-build, ssu-cmalign, ssu-cmbuild, ssu-cmcalibrate, ssu-cmemit, ssu-cmfetch, ssu-cmscore, ssu-cmsearch, ssu-cmstat, ssu-draw, ssu-esl-afetch, ssu-esl-alimanip, ssu-esl-alimap, ssu-esl-alimask, ssu-esl-alimerge, ssu-esl-alistat, ssu-esl-cluster, ssu-esl-compalign, ssu-esl-compstruct, ssu-esl-histplot, ssu-esl-mask, ssu-esl-reformat, ssu-esl-selectn, ssu-esl-seqrange, ssu-esl-seqstat, ssu-esl-sfetch, ssu-esl-shuffle, ssu-esl-ssdraw, ssu-esl-weight, ssu-mask, ssu-merge, ssu-prep, test-sra.2.10.8, uchime, vdb-config.2.10.8, vdb-copy.2.10.8, vdb-decrypt.2.10.8, vdb-diff.2.10.8, vdb-dump-orig.2.10.8, vdb-dump.2.10.8, vdb-encrypt.2.10.8, vdb-lock.2.10.8, vdb-passwd.2.10.8, vdb-unlock.2.10.8, vdb-validate.2.10.8, align-cache.2, md5cp.2, read-filter-redact.2, sra-sort-cg.2, vdb-diff.2, align-cache, fasterq-dump-orig, fastq-dump-orig, md5cp, prefetch-orig |
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GITHUB
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quay.io/biocontainers/genomic_address_service |
singularity registry hpc automated addition for genomic_address_service |
cmtime, cpuinfo, gas, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, mckey, protoc-24.3.0, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, ucmatose, udaddy, udpong, h5fuse.sh, io_demo, ucx_info, ucx_perftest, ucx_read_profile, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, h5delete, gflags_completions.sh, pt2to3 |
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GITHUB
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quay.io/biocontainers/genomic_regions |
shpc-registry automated BioContainers addition for genomic_regions |
convert-regions, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, futurize, pasteurize |
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GITHUB
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quay.io/biocontainers/genomicassertions |
shpc-registry automated BioContainers addition for genomicassertions |
vcf_sample_filter.py, vcf_filter.py, vcf_melt, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config |
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GITHUB
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quay.io/biocontainers/genomicconsensus |
shpc-registry automated BioContainers addition for genomicconsensus |
ccache-swig, dataset.py, gffToBed, gffToVcf, pbservice, plurality, quiver, summarizeConsensus, swig, variantCaller, unit2, avro, cygdb, cython, cythonize, jsonschema, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl |
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GITHUB
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quay.io/biocontainers/genomics-data-index |
singularity registry hpc automated addition for genomics-data-index |
attr, balsam, dumpsexp, gdi, getfattr, gpg-error, gpg-error-config, gpgrt-config, hmac256, ipython3.9, iqtree2, jackd, lame, libgcrypt-config, lprodump, lrelease-pro, lupdate-pro, meshdebug, mpg123, mpg123-id3dump, mpg123-strip, mpicalc, orc-bugreport, orcc, out123, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, pulseaudio, pyppeteer-install, qmlformat, qmltime, qmltyperegistrar, qpaeq, seqrepo, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, sourmash, sqlformat, tracegen, yat2m, yoyo, yoyo-migrate, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, stone, plac_runner.py, screed, yte, iqtree, snpEff, docutils, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin |
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GITHUB
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quay.io/biocontainers/genonets |
shpc-registry automated BioContainers addition for genonets |
igraph, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis, ndmetis, glpsol, tqdm, f2py3.9 |
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GITHUB
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quay.io/biocontainers/genotyphi |
shpc-registry automated BioContainers addition for genotyphi |
genotyphi, genotyphi.py, parse_typhi_mykrobe.py, gff2gff.py, guess-ploidy.py, plot-roh.py, run-roh.pl, f2py2, f2py2.7, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl |
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GITHUB
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quay.io/biocontainers/genrich |
shpc-registry automated BioContainers addition for genrich |
Genrich |
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GITHUB
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quay.io/biocontainers/gentle |
singularity registry hpc automated addition for gentle |
GENtle, gtk-builder-tool, gtk-encode-symbolic-svg, gtk-launch, gtk-query-immodules-3.0, gtk-query-settings, ibd2sdi, innochecksum, myisam_ftdump, myisamchk, myisamlog, myisampack, mysql, mysql.server, mysql_config_editor, mysql_migrate_keyring, mysql_secure_installation, mysql_ssl_rsa_setup, mysql_tzinfo_to_sql, mysql_upgrade, mysqladmin, mysqlbinlog, mysqlcheck, mysqld, mysqld_multi, mysqld_safe, mysqldump, mysqldumpslow, mysqlimport, mysqlpump, mysqlshow, mysqlslap, protoc-23.4.0, wayland-scanner, wx-config, wxrc, wxrc-3.2, zlib_decompress, xkbcli, my_print_defaults, mysql_config, perror, hb-info, cups-config, ippeveprinter, ipptool, rsvg-convert, tjbench, gtk-update-icon-cache, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, protoc, gst-device-monitor-1.0, gst-discoverer-1.0, gst-play-1.0, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, gst-inspect-1.0 |
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GITHUB
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quay.io/biocontainers/genview |
singularity registry hpc automated addition for genview |
genview-makedb, genview-visualize, time, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div, cd-hit-div.pl, cd-hit-est-2d, cd-hit-para.pl, clstr2tree.pl, clstr2txt.pl, clstr2xml.pl, clstr_cut.pl, clstr_merge.pl, clstr_merge_noorder.pl, clstr_quality_eval.pl, clstr_quality_eval_by_link.pl, clstr_reduce.pl, clstr_renumber.pl, clstr_rep.pl, clstr_reps_faa_rev.pl, clstr_rev.pl |
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GITHUB
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quay.io/biocontainers/geodl |
shpc-registry automated BioContainers addition for geodl |
geoDL, xslt-config, xsltproc, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
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quay.io/biocontainers/geofetch |
singularity registry hpc automated addition for geofetch |
f2py3.11, geofetch, markdown-it, sraconvert, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, coloredlogs, humanfriendly, py.test, pytest, jsonschema, pygmentize, normalizer, python3.1 |
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GITHUB
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quay.io/biocontainers/geosketch |
shpc-registry automated BioContainers addition for geosketch |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/gepard |
shpc-registry automated BioContainers addition for gepard |
gepard, gepardcmd, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/gerp |
shpc-registry automated BioContainers addition for gerp |
gerpcol, gerpelem |
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GITHUB
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quay.io/biocontainers/get_fasta_info |
singularity registry hpc automated addition for get_fasta_info |
get_fasta_info, get_fastq_info |
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GITHUB
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quay.io/biocontainers/get_homologues |
singularity registry hpc automated addition for get_homologues |
CHANGES.txt, COGcognitor, COGlse, COGmakehash, COGreadblast, COGtriangles, DrawGram.jar, DrawTree.jar, LICENSE.txt, add_pancore_matrices.pl, add_pangenome_matrices.pl, annotate_cluster.pl, check_BDBHs.pl, clique, compare_clusters.pl, consense, contml, contrast, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, dollop, dolmove, dolpenny, download_genomes_ncbi.pl, drawgram, drawgram_gui, drawtree, drawtree_gui, fitch, gendist, get_homologues-est.pl, get_homologues.pl, hcluster_pangenome_matrix.sh, install.pl, kitsch, make_nr_pangenome_matrix.pl, mix, move, neighbor, pars, parse_pangenome_matrix.pl, penny, pfam_enrich.pl, phylip, plot_matrix_heatmap.sh, plot_pancore_matrix.pl, proml, promlk, protdist, protpars, restdist, restml, retree, seqboot, transcripts2cds.pl, transcripts2cdsCPP.pl, treedist, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray, mcxassemble, mcxdeblast, mcxdump, mcxi, mcxload, mcxmap, mcxrand, mcxsubs, jpackage, diamond, factor, cups-config, ippeveprinter, ipptool, bdf2gdfont.pl, edirect.py |
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GITHUB
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quay.io/biocontainers/get_mnv |
singularity registry hpc automated addition for get_mnv |
get_mnv, annot-tsv, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/get_orfs |
singularity registry hpc automated addition for get_orfs |
get_orfs |
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GITHUB
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quay.io/biocontainers/getorganelle |
shpc-registry automated BioContainers addition for getorganelle |
check_annotations.py, cook_coding_for_blast.py, disentangle_organelle_assembly.py, evaluate_assembly_using_mapping.py, fastg_to_gfa.py, get_organelle_config.py, get_organelle_from_assembly.py, get_organelle_from_reads.py, get_pair_reads.py, gfa_to_fasta.py, gfa_to_fastg.py, isympy, join_spades_fastg_by_blast.py, make_batch_for_get_organelle.py, make_batch_for_iteratively_mapping_assembling.py, plastome_arch_info.py, reconstruct_graph_from_fasta.py, rm_low_coverage_duplicated_contigs.py, round_statistics.py, slim_graph.py, summary_get_organelle_output.py, cds-mapping-stats, cds-subgraphs, mag-improve, spades-convert-bin-to-fasta, spades-gsimplifier, spades-kmer-estimating, spades-read-filter, spaligner, spades-bwa, spades-core |
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GITHUB
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quay.io/biocontainers/gevent |
shpc-registry automated BioContainers addition for gevent |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/gfa1 |
singularity registry hpc automated addition for gfa1 |
falcon2gfa, fastg2gfa, gfaview, mag2gfa, supernova2gfa |
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GITHUB
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quay.io/biocontainers/gfaffix |
shpc-registry automated BioContainers addition for gfaffix |
gfaffix |
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GITHUB
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quay.io/biocontainers/gfainject |
singularity registry hpc automated addition for gfainject |
gfainject |
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GITHUB
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quay.io/biocontainers/gfapy |
shpc-registry automated BioContainers addition for gfapy |
gfapy-convert, gfapy-mergelinear, gfapy-renumber, gfapy-validate, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/gfastats |
shpc-registry automated BioContainers addition for gfastats |
gfastats |
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GITHUB
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quay.io/biocontainers/gfatools |
shpc-registry automated BioContainers addition for gfatools |
gfatools, paf2gfa |
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GITHUB
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quay.io/biocontainers/gff2bed |
singularity registry hpc automated addition for gff2bed |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
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quay.io/biocontainers/gff3sort |
shpc-registry automated BioContainers addition for gff3sort |
check-disorder.pl, gff3sort.pl, findrule, perl5.26.2, podselect |
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GITHUB
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quay.io/biocontainers/gff3toddbj |
shpc-registry automated BioContainers addition for gff3toddbj |
compare-ddbj, genbank-to-ddbj, gff3-to-ddbj, list-products, normalize-entry-names, split-fasta, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
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GITHUB
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quay.io/biocontainers/gff3toembl |
shpc-registry automated BioContainers addition for gff3toembl |
genometools-config, gff3_to_embl, gt, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/gffcompare |
shpc-registry automated BioContainers addition for gffcompare |
gffcompare, gtest, threads |
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GITHUB
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quay.io/biocontainers/gfflu |
singularity registry hpc automated addition for gfflu |
blastn_vdb, gfflu, miniprot, tblastn_vdb, markdown-it, uuid, uuid-config, test_pcre, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py, bed_count_overlapping.py, bed_coverage.py, bed_coverage_by_interval.py, bed_diff_basewise_summary.py, bed_extend_to.py, bed_intersect.py, bed_intersect_basewise.py, bed_merge_overlapping.py, bed_rand_intersect.py, bed_subtract_basewise.py, bnMapper.py |
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GITHUB
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quay.io/biocontainers/gffmunger |
shpc-registry automated BioContainers addition for gffmunger |
genometools-config, gffmunger, gt, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, faidx, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7 |
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GITHUB
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quay.io/biocontainers/gffpandas |
singularity registry hpc automated addition for gffpandas |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/gffread |
shpc-registry automated BioContainers addition for gffread |
gffread |
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GITHUB
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quay.io/biocontainers/gfftk |
singularity registry hpc automated addition for gfftk |
gfftk, table2asn, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, natsort |
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GITHUB
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quay.io/biocontainers/gffutils |
shpc-registry automated BioContainers addition for gffutils |
gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, faidx, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config |
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GITHUB
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quay.io/biocontainers/gfinisher |
shpc-registry automated BioContainers addition for gfinisher |
gfinisher, easy_install-2.7, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj |
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GITHUB
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quay.io/biocontainers/gfmix |
singularity registry hpc automated addition for gfmix |
alpha_est_mix_rt, gfmix, rert, treecns |
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GITHUB
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quay.io/biocontainers/gfold |
shpc-registry automated BioContainers addition for gfold |
gfold |
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GITHUB
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quay.io/biocontainers/ggcaller |
shpc-registry automated BioContainers addition for ggcaller |
Bifrost, ggcaller, rapidnj, torchrun, snp-sites, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, gffutils-cli, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit |
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GITHUB
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quay.io/biocontainers/ggcat |
singularity registry hpc automated addition for ggcat |
ggcat |
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GITHUB
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quay.io/biocontainers/ggd |
shpc-registry automated BioContainers addition for ggd |
bsdcat, bsdcpio, bsdtar, check-sort-order, conda-build, conda-convert, conda-debug, conda-develop, conda-index, conda-inspect, conda-metapackage, conda-render, conda-skeleton, ggd, gsort, patchelf, pkginfo, rg, conda-env, cph, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, cyvcf2 |
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GITHUB
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quay.io/biocontainers/gget |
singularity registry hpc automated addition for gget |
attr, balsam, esdcompat, getfattr, gget, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, jupyter-console, jupyter-qtconsole, lprodump, lrelease-pro, lupdate-pro, meshdebug, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, qtpy, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, jupyter-execute, flac, jupyter-dejavu, metaflac, send2trash, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, xml2-config.bak, pandoc-server, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run |
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GITHUB
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quay.io/biocontainers/ggplot |
shpc-registry automated BioContainers addition for ggplot |
easy_install-3.6, qhelpconverter, pylupdate5, pyrcc5, pyuic5, sip, qdoc, gst-device-monitor-1.0, gst-discoverer-1.0, gst-play-1.0 |
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GITHUB
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quay.io/biocontainers/ghm |
shpc-registry automated BioContainers addition for ghm |
ghm |
|
GITHUB
|
quay.io/biocontainers/ghmm |
shpc-registry automated BioContainers addition for ghmm |
ccache-swig, ghmm-config, probdist, scluster, smix_hmm, swig, cluster, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/ghost-tree |
shpc-registry automated BioContainers addition for ghost-tree |
|
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GITHUB
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quay.io/biocontainers/ghostscript |
shpc-registry automated BioContainers addition for ghostscript |
font2c, wftopfa, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500, gslj, gslp, gsnd, lprsetup.sh |
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GITHUB
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quay.io/biocontainers/ghostx |
shpc-registry automated BioContainers addition for ghostx |
ghostx |
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GITHUB
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quay.io/biocontainers/ghostz |
shpc-registry automated BioContainers addition for ghostz |
ghostz |
|
GITHUB
|
quay.io/biocontainers/giatools |
singularity registry hpc automated addition for giatools |
SvtAv1DecApp, SvtAv1EncApp, rav1e, dav1d, tiff2fsspec, aomdec, aomenc, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, imageio_download_bin, imageio_remove_bin, skivi, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tjbench, brotli |
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GITHUB
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quay.io/biocontainers/gifrop |
shpc-registry automated BioContainers addition for gifrop |
abricate, abricate-get_db, cluster_graphs.R, create_pan_genome, create_pan_genome_plots.R, extract_proteome_from_gff, gifrop, gifrop_R_reqs.R, gifrop_classify.R, gifrop_cluster.R, gifrop_id.R, gifrop_pannotate.R, gifrop_plots.R, iterative_cdhit, pan_genome_assembly_statistics, pan_genome_core_alignment, pan_genome_post_analysis, pan_genome_reorder_spreadsheet, pan_pipe, parallel_all_against_all_blastp, protein_alignment_from_nucleotides, query_pan_genome, roary, roary-create_pan_genome_plots.R, roary-pan_genome_reorder_spreadsheet, roary-query_pan_genome, roary-unique_genes_per_sample, submodule_test.R, tbl2asn-test, transfer_annotation_to_groups, yapp, fix-sqn-date, prank, faketime, real-tbl2asn, prokka-abricate_to_fasta_db, any2fasta, clm, clmformat, clxdo, mcl |
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GITHUB
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quay.io/biocontainers/gimbleprep |
singularity registry hpc automated addition for gimbleprep |
gimbleprep, mosdepth, tabix++, bc, dc, abba-baba, bFst, bed2region, bgziptabix, dumpContigsFromHeader, genotypeSummary, hapLrt, iHS, meltEHH, normalize-iHS, pFst, pVst, permuteGPAT++, permuteSmooth, plotHaps, popStats, segmentFst, segmentIhs, sequenceDiversity, smoother, vcf2bed.py, vcf2dag |
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GITHUB
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quay.io/biocontainers/gimmemotifs-minimal |
singularity registry hpc automated addition for gimmemotifs-minimal |
attr, balsam, bedToGenePred, combine_peaks, coverage_table, csv-import, dumpsexp, elasticurl, elasticurl_cpp, elastipubsub, fluff, genePredToBed, genePredToGtf, genomepy, getfattr, gff3ToGenePred, gimme, gpg-error, gpgrt-config, gtfToGenePred, hmac256, htseq-count-barcodes, jackd, lame, libgcrypt-config, lprodump, lrelease-pro, lupdate-pro, meshdebug, mpg123, mpg123-id3dump, mpg123-strip, mpicalc, orc-bugreport, orc-memory, orc-scan, orcc, out123, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, produce_x_platform_fuzz_corpus, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qnorm, qpaeq, run_x_platform_fuzz_corpus, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, timezone-dump, tracegen, yat2m, flac, metaflac, nosetests-3.9, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, xxh128sum, xxh32sum, xxh64sum, htseq-count, htseq-qa, xxhsum |
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GITHUB
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quay.io/biocontainers/gimmemotifs |
shpc-registry automated BioContainers addition for gimmemotifs |
GenomeOntology.pl, HomerConfig.pm, HomerSVGLogo.pm, ProSampler, SIMA.pl, Statistics.pm, XXmotif, addData.pl, addDataHeader.pl, addGeneAnnotation.pl, addInternalData.pl, addOligos.pl, adjustPeakFile.pl, adjustRedunGroupFile.pl, analyzeChIP-Seq.pl, analyzeHiC, analyzeRNA.pl, analyzeRepeats.pl, annotateInteractions.pl, annotatePeaks.pl, annotateRelativePosition.pl, annotateTranscripts.pl, assignGeneWeights.pl, assignGenomeAnnotation, assignTSStoGene.pl, batchAnnotatePeaksHistogram.pl, batchFindMotifs.pl, batchFindMotifsGenome.pl, batchMakeHiCMatrix.pl, batchMakeMultiWigHub.pl, batchMakeTagDirectory.pl, batchParallel.pl, bed2DtoUCSCbed.pl, bed2pos.pl, bed2tag.pl, bedToGenePred, bigBedToBed, blat2gtf.pl, bridgeResult2Cytoscape.pl, changeNewLine.pl, checkPeakFile.pl, checkTagBias.pl, chopUpBackground.pl, chopUpPeakFile.pl, chopify.pl, cleanUpPeakFile.pl, cleanUpSequences.pl, cluster2bed.pl, cluster2bedgraph.pl, combineGO.pl, combineHubs.pl, combine_peaks, compareMotifs.pl, condenseBedGraph.pl, cons2fasta.pl, conservationAverage.pl, conservationPerLocus.pl, convertCoordinates.pl, convertIDs.pl, convertOrganismID.pl, coverage_table, createIGVhtml.pl, dinamo, dtc, duplicateCol.pl, eland2tags.pl, enr, fasta-from-bed, fasta-re-match, fasta2tab.pl, fastq2fasta.pl, filterListBy.pl, filterTADsAndCPs.pl, filterTADsAndLoops.pl, filterTagDirectory.pl, findGO.pl, findGOtxt.pl, findHiCCompartments.pl, findHiCDomains.pl, findHiCInteractionsByChr.pl, findKnownMotifs.pl, findMotifs.pl, findMotifsGenome.pl, findPeaks, findRedundantBLAT.pl, findTADsAndLoops.pl, findTADsAndLoopsFromRelMatrix, findTopMotifs.pl, findcsRNATSS.pl, flipPC1toMatch.pl, fluff, freq2group.pl, gadem, genePredToBed, genePredToGtf, genericConvertIDs.pl, genomeOntology, genomepy, getChrLengths.pl, getConservedRegions.pl, getDiffExpression.pl, getDifferentialBedGraph.pl, getDifferentialPeaks, getDifferentialPeaksReplicates.pl, getDistalPeaks.pl, getFocalPeaks.pl, getGWASoverlap.pl, getGenesInCategory.pl, getGenomeTilingPeaks, getHiCcorrDiff.pl, getHomerQCstats.pl, getLikelyAdapters.pl, getMappableRegions, getMappingStats.pl, getPartOfPromoter.pl, getPeakTags, getPos.pl, getRandomReads.pl, getSiteConservation.pl, getTopPeaks.pl, gff2pos.pl, gff3ToGenePred, gimme, go2cytoscape.pl, groupSequences.pl, gtfToGenePred, homer, homer2, homerTools, htseq-count-barcodes, index-fasta-file, joinFiles.pl, loadGenome.pl, loadPromoters.pl, makeBigBedMotifTrack.pl, makeBigWig.pl, makeBinaryFile.pl, makeHiCWashUfile.pl, makeMetaGeneProfile.pl, makeMultiWigHub.pl, makeTagDirectory, makeUCSCfile, map-fastq.pl, meme-chip_html_to_tsv, merge2Dbed.pl, mergeData.pl, mergePeaks, momo, motif2Jaspar.pl, motif2Logo.pl, parseGTF.pl, pos2bed.pl, prepForR.pl, preparseGenome.pl, profile2seq.pl, qnorm, qseq2fastq.pl, randRemoveBackground.pl, randomizeGroupFile.pl, randomizeMotifs.pl, removeAccVersion.pl, removeBadSeq.pl, removeOutOfBoundsReads.pl, removePoorSeq.pl, removeRedundantPeaks.pl, renamePeaks.pl, resizePosFile.pl, revoppMotif.pl, rotateHiCmatrix.pl, runHiCpca.pl, sam2spliceJunc.pl, scanMotifGenomeWide.pl, scrambleFasta.pl, selectRepeatBg.pl, seq2profile.pl, streme, streme_xml_to_html, subtractBedGraphs.pl, subtractBedGraphsDirectory.pl, tab2fasta.pl, tag2bed.pl, tag2pos.pl, tagDir2HiCsummary.pl, tagDir2bed.pl, tagDir2hicFile.pl, tgene, trawler, weeder2, zipHomerResults.pl, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip |
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GITHUB
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quay.io/biocontainers/ginpipepy |
shpc-registry automated BioContainers addition for ginpipepy |
vcf_sample_filter.py, vcf_filter.py, vcf_melt, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/ginpiper |
shpc-registry automated BioContainers addition for ginpiper |
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GITHUB
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quay.io/biocontainers/git-lfs |
shpc-registry automated BioContainers addition for git-lfs |
git-lfs |
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GITHUB
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quay.io/biocontainers/glimmer |
shpc-registry automated BioContainers addition for glimmer |
anomaly, build-fixed, build-icm, entropy-profile, entropy-score, extract, g3-from-scratch.csh, g3-from-training.csh, g3-iterated.csh, get-motif-counts.awk, glim-diff.awk, glimmer3, long-orfs, match-list-col.awk, multi-extract, not-acgt.awk, score-fixed, start-codon-distrib, uncovered, upstream-coords.awk, window-acgt, test |
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GITHUB
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quay.io/biocontainers/glimmerhmm |
shpc-registry automated BioContainers addition for glimmerhmm |
glimmerhmm, trainGlimmerHMM, glimmhmm.pl, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/glimpse-bio |
shpc-registry automated BioContainers addition for glimpse-bio |
GLIMPSE_chunk, GLIMPSE_concordance, GLIMPSE_ligate, GLIMPSE_phase, GLIMPSE_sample, GLIMPSE_snparray, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/glnexus |
shpc-registry automated BioContainers addition for glnexus |
glnexus_cli, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/glob2 |
shpc-registry automated BioContainers addition for glob2 |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/gloome |
singularity registry hpc automated addition for gloome |
gainLoss |
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GITHUB
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quay.io/biocontainers/glpk |
shpc-registry automated BioContainers addition for glpk |
glpsol |
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GITHUB
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quay.io/biocontainers/gmap-fusion |
shpc-registry automated BioContainers addition for gmap-fusion |
GMAP-fusion, atoiindex, cmetindex, cpuid, dbsnp_iit, ensembl_genes, fa_coords, get-genome, gff3_genes, gff3_introns, gff3_splicesites, gmap.sse42, gmap_build, gmap_compress, gmap_process, gmap_reassemble, gmap_uncompress, gmapindex, gmapl, gmapl.sse42, gsnap, gsnap.sse42, gsnapl, gsnapl.sse42, gtf_genes, gtf_introns, gtf_splicesites, gtf_transcript_splicesites, gvf_iit, iit_dump, iit_get, iit_store, md_coords, psl_genes, psl_introns, psl_splicesites, sam_sort, snpindex, trindex, vcf_iit, gmap, db_archive, db_checkpoint, db_deadlock, db_dump, db_hotbackup, db_load, db_log_verify, db_printlog, db_recover |
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GITHUB
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quay.io/biocontainers/gmap |
shpc-registry automated BioContainers addition for gmap |
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GITHUB
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quay.io/biocontainers/gmcloser |
shpc-registry automated BioContainers addition for gmcloser |
Nucmer_contig_align.pl, Nucmer_contig_validate.pl, Nucmer_scaf_validate.pl, Nucmer_subcontig_validate.pl, connect_subcontigs_GMcloser2.pl, correct_contigs_coords.pl, correct_scafs_coords.pl, correct_subcontigs_coords.pl, coval-filter-short.pl, gmcloser, gmcloser-blast-LR-MT.pl, gmcloser-blast.pl, gmcloser-nucmer.pl, gmvalue, gmvalue.utl, split_scaffolds_to_subcontigs.pl, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot |
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GITHUB
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quay.io/biocontainers/gmgc-mapper |
shpc-registry automated BioContainers addition for gmgc-mapper |
gmgc-mapper, doesitcache, iptest3, iptest, ipython3, ipython, cygdb, cython, cythonize, py.test, pytest |
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GITHUB
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quay.io/biocontainers/gmm-demux |
singularity registry hpc automated addition for gmm-demux |
GMM-demux, tabulate, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/gmsc-mapper |
singularity registry hpc automated addition for gmsc-mapper |
archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, archspec, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gawk-5.3.0, gawkbug, gbf2fsa, gbf2ref, gm2ranges, gm2segs, gmsc-mapper, ini2xml, jsonl2xml, just-first-key, nhance.sh, pma2apa, pma2pme, pmc2bioc, pmc2info, quote-grouped-elements, ref2pmid, refseq-nm-cds, scn2xml, stream-local, test-pmc-index, toml2xml, yaml2xml, pyrodigal, aria2c, blastn_vdb, tblastn_vdb, uuid, uuid-config, mmseqs, test_pcre, awk, gawk, diamond, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi |
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GITHUB
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quay.io/biocontainers/gmtk |
shpc-registry automated BioContainers addition for gmtk |
discrete-mi, fixTri.sh, generate_random_graph.pl, gmtkDMLPtrain, gmtkDTindex, gmtkEMtrain, gmtkJT, gmtkKernel, gmtkMMItrain, gmtkModelInfo, gmtkNGramIndex, gmtkOnline, gmtkParmConvert, gmtkPrint, gmtkTFmerge, gmtkTie, gmtkTime, gmtkTriangulate, gmtkViterbi, obs-cat, obs-concat, obs-diff, obs-info, obs-print, obs-skmeans, obs-stats, obs-window, triangulateGA, triangulateParallel, triangulateTimings, mirror_server, mirror_server_stop, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy |
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GITHUB
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quay.io/biocontainers/gmwi2 |
singularity registry hpc automated addition for gmwi2 |
add_metadata_tree.py, blastn_vdb, breadth_depth.py, consensus.py, consensus_aDNA.py, extract_markers.py, gmwi2, merge_metaphlan_tables.py, metaphlan, phylophlan, phylophlan_draw_metagenomic, phylophlan_get_reference, phylophlan_metagenomic, phylophlan_setup_database, phylophlan_strain_finder, phylophlan_write_config_file, phylophlan_write_default_configs.sh, plot_tree_graphlan.py, poly.py, polymut.py, read_fastx.py, sample2markers.py, strain_transmission.py, strainphlan, tblastn_vdb, iqtree2, readal, statal, trimal, h5delete, iqtree, biom, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps |
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GITHUB
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quay.io/biocontainers/gnali |
shpc-registry automated BioContainers addition for gnali |
bigWigToWig.pl, filter_vep, gnali, gnali_get_data, haplo, ibd2sdi, index_bigwigset.pl, innochecksum, myisam_ftdump, myisamchk, myisamlog, myisampack, mysql, mysql.server, mysql_config_editor, mysql_migrate_keyring, mysql_secure_installation, mysql_ssl_rsa_setup, mysql_tzinfo_to_sql, mysql_upgrade, mysqladmin, mysqlbinlog, mysqlcheck, mysqld, mysqld_multi, mysqld_safe, mysqldump, mysqldumpslow, mysqlimport, mysqlpump, mysqlshow, mysqlslap, variant_recoder, vep, vep_convert_cache, vep_install, wigToBigWig.pl, zlib_decompress, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, funzip, unzipsfx, zipgrep |
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GITHUB
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quay.io/biocontainers/gndiff |
singularity registry hpc automated addition for gndiff |
gndiff |
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GITHUB
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quay.io/biocontainers/gneiss |
shpc-registry automated BioContainers addition for gneiss |
biom, doesitcache, nosetests, compile-et.pl, iptest3, prerr.properties, bokeh, iptest, ipython3, ipython |
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GITHUB
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quay.io/biocontainers/gnomic |
shpc-registry automated BioContainers addition for gnomic |
grako, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/gnparser |
singularity registry hpc automated addition for gnparser |
gnparser |
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GITHUB
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quay.io/biocontainers/gnu-wget |
shpc-registry automated BioContainers addition for gnu-wget |
idn2, wget |
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GITHUB
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quay.io/biocontainers/gnuplot-py |
shpc-registry automated BioContainers addition for gnuplot-py |
gnuplot, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/gnuplot |
shpc-registry automated BioContainers addition for gnuplot |
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GITHUB
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quay.io/biocontainers/gnuvid |
shpc-registry automated BioContainers addition for gnuvid |
Clonal_complex_assigner.py, Extract_US_genomes.py, Extract_fasta_sequence_blast_report.py, GNUVID.py, GNUVID_CCs_summary.py, GNUVID_FASTA_divider.py, GNUVID_Post_CC_processor.py, GNUVID_Post_Training.py, GNUVID_Predict.py, GNUVID_Subsample_STs.py, GNUVID_Training.py, GNUVID_database_customizer.py, GNUVID_preprocessor.py, GNUVID_update_db.py, Metadata_piechart.py, Temporal_plot_Introductions_Importations.py, gofasta, filter-table, spdi2prod, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi |
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GITHUB
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quay.io/biocontainers/go-figure |
singularity registry hpc automated addition for go-figure |
go.obo, gofigure.py, ic.tsv, relations_full.tsv, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc, python3.1 |
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GITHUB
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quay.io/biocontainers/go |
shpc-registry automated BioContainers addition for go |
go, gofmt |
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GITHUB
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quay.io/biocontainers/goalign |
shpc-registry automated BioContainers addition for goalign |
goalign, goalign_test.sh |
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GITHUB
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quay.io/biocontainers/goat |
shpc-registry automated BioContainers addition for goat |
goat-cli |
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GITHUB
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quay.io/biocontainers/goatools |
shpc-registry automated BioContainers addition for goatools |
compare_gos.py, fetch_associations.py, find_enrichment.py, go_plot.py, map_to_slim.py, ncbi_gene_results_to_python.py, plot_go_term.py, prt_terms.py, wr_hier.py, wr_sections.py, vba_extract.py, diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate |
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GITHUB
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quay.io/biocontainers/goblin |
singularity registry hpc automated addition for goblin |
executor, f2py3.11, gimme_taxa.py, goblin, ncbi-genome-download, ngd, rich-click, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div, cd-hit-div.pl, cd-hit-est-2d, cd-hit-para.pl, clstr2tree.pl, clstr2txt.pl, clstr2xml.pl, clstr_cut.pl, clstr_merge.pl, clstr_merge_noorder.pl, clstr_quality_eval.pl, clstr_quality_eval_by_link.pl |
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GITHUB
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quay.io/biocontainers/gocr |
shpc-registry automated BioContainers addition for gocr |
gocr, gocr.tcl |
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GITHUB
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quay.io/biocontainers/godmd |
shpc-registry automated BioContainers addition for godmd |
discrete, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/goenrichment |
shpc-registry automated BioContainers addition for goenrichment |
goenrichment, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/goetia |
shpc-registry automated BioContainers addition for goetia |
bam2fasta, c-index-test, clang, clang++, clang-5.0, clang-check, clang-cl, clang-cpp, clang-format, clang-import-test, clang-offload-bundler, clang-rename, cling-config, cppyy-generator, cpuinfo, draff, genreflex, git-clang-format, goetia, pathos_connect, portpicker, pox, ppserver, pyfiglet, rootcling, scan-build, scan-view, sourmash, screed, get_objgraph, undill, f2py3.6, jsonschema, tqdm, 2to3-3.6, idle3.6, pydoc3.6, python3.6 |
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GITHUB
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quay.io/biocontainers/gofasta |
shpc-registry automated BioContainers addition for gofasta |
gofasta |
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GITHUB
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quay.io/biocontainers/gogstools |
singularity registry hpc automated addition for gogstools |
gff2embl, gffread, ogs_check, ogs_merge, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical, bam2bed_sge, bam2bed_sge-float128, bam2bed_sge-megarow, bam2bed_sge-typical, bam2bed_slurm, bam2bed_slurm-float128, bam2bed_slurm-megarow, bam2bed_slurm-typical, bam2starch, bam2starch-float128, bam2starch-megarow, bam2starch-typical, bam2starch_gnuParallel, bam2starch_gnuParallel-float128, bam2starch_gnuParallel-megarow, bam2starch_gnuParallel-typical, bam2starch_sge |
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GITHUB
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quay.io/biocontainers/goldrush |
singularity registry hpc automated addition for goldrush |
abyss-rresolver-short, abyss-stack-size, goldrush, goldrush-edit, goldrush-edit-autoclean, goldrush-edit-hold, goldrush-edit-index, goldrush-edit-make, goldrush-edit-mask, goldrush-edit-ntedit, goldrush-edit-polish-batch, goldrush-edit-reaper, goldrush-edit-targeted-bfs, goldrush-edit-to-upper, goldrush-path, goldrush.make, goldrush_edit_utils.py, gunzip, gzexe, gzip, indexlr, irqtop, lrunzip, lrzcat, lrzip, lrztar, lrzuntar, lsirq, nsenter, ntLink, ntLink_rounds, ntedit-gr, pprof, pprof-symbolize, prlimit, scriptlive, sealer-gr, tigmint, tigmint-arcs-tsv, tigmint-cut, tigmint-make, tigmint_estimate_dist.py, tigmint_molecule.py, tigmint_molecule_paf.py, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zmore, znew, zsh, zsh-5.8, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject, fallocate, fincore, findmnt, getopt, hardlink, hexdump, i386, ionice, ipcmk, ipcrm, ipcs, isosize, last, lastb, linux32 |
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GITHUB
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quay.io/biocontainers/goleft |
shpc-registry automated BioContainers addition for goleft |
goleft, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa |
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GITHUB
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quay.io/biocontainers/google-api-python-client |
shpc-registry automated BioContainers addition for google-api-python-client |
smtpd.pyc, pyrsa-decrypt-bigfile, pyrsa-encrypt-bigfile, easy_install-2.7, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, python2-config |
|
GITHUB
|
quay.io/biocontainers/google-cloud-sdk |
shpc-registry automated BioContainers addition for google-cloud-sdk |
bq, gcloud, gsutil, easy_install-2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/google-sparsehash |
shpc-registry automated BioContainers addition for google-sparsehash |
sparsetable_unittest |
|
GITHUB
|
quay.io/biocontainers/gopeaks |
singularity registry hpc automated addition for gopeaks |
gopeaks |
|
GITHUB
|
quay.io/biocontainers/gor_pyspark |
singularity registry hpc automated addition for gor_pyspark |
beeline, beeline.cmd, csv-import, docker-image-tool.sh, f2py3.11, find-spark-home, find-spark-home.cmd, find_spark_home.py, load-spark-env.cmd, load-spark-env.sh, orc-memory, orc-scan, pyspark, pyspark.cmd, pyspark2.cmd, run-example, run-example.cmd, spark-class, spark-class.cmd, spark-class2.cmd, spark-shell, spark-shell.cmd, spark-shell2.cmd, spark-sql, spark-sql.cmd, spark-sql2.cmd, spark-submit, spark-submit.cmd, spark-submit2.cmd, sparkR, sparkR.cmd, sparkR2.cmd, timezone-dump, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, protoc, python3.1 |
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GITHUB
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quay.io/biocontainers/gorpipe |
singularity registry hpc automated addition for gorpipe |
gorpipe, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap, jps |
|
GITHUB
|
quay.io/biocontainers/goslimmer |
shpc-registry automated BioContainers addition for goslimmer |
goslimmer, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/gothresher |
singularity registry hpc automated addition for gothresher |
gothresher, gothresher_prep, vba_extract.py, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/gotohscan |
shpc-registry automated BioContainers addition for gotohscan |
GotohScan |
|
GITHUB
|
quay.io/biocontainers/gotree |
shpc-registry automated BioContainers addition for gotree |
gotree, gotree_test.sh |
|
GITHUB
|
quay.io/biocontainers/gottcha |
shpc-registry automated BioContainers addition for gottcha |
convert_abu2list.pl, filterGottcha.pl, gottcha.pl, gottcha_db.pl, makeVariantTaxLookups.pl, mkGottchaTaxTree.pl, mkGottchaXML.pl, profileGottcha.pl, splitrim, qualfa2fq.pl, xa2multi.pl, bwa, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/gottcha2 |
singularity registry hpc automated addition for gottcha2 |
cmd.py, gawk-5.3.0, gawkbug, gottcha2, gottcha2.py, pull_database.py, taxonomy.py, h5tools_test_utils, biom, h5fuse.sh, h5delete, awk, gawk, sdust, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, k8, paftools.js, minimap2, tqdm, normalizer, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy |
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GITHUB
|
quay.io/biocontainers/gplas |
shpc-registry automated BioContainers addition for gplas |
gplas.sh, stone, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file |
|
GITHUB
|
quay.io/biocontainers/gprofiler-official |
shpc-registry automated BioContainers addition for gprofiler-official |
chardetect, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/gqt |
shpc-registry automated BioContainers addition for gqt |
gqt, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/grabix |
shpc-registry automated BioContainers addition for grabix |
grabix |
|
GITHUB
|
quay.io/biocontainers/grafimo |
shpc-registry automated BioContainers addition for grafimo |
grafimo, vg, numba, pycc, diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare |
|
GITHUB
|
quay.io/biocontainers/graftm |
shpc-registry automated BioContainers addition for graftm |
graftM, ktClassifyHits, ktImportHits, mfqe, orfm, taxit, ktClassifyBLAST, ktGetContigMagnitudes, ktGetLCA, ktGetLibPath, ktGetTaxIDFromAcc, ktGetTaxInfo, ktImportBLAST, ktImportDiskUsage, ktImportEC, ktImportFCP |
|
GITHUB
|
quay.io/biocontainers/grampa |
shpc-registry automated BioContainers addition for grampa |
grampa.py, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/grapetree |
shpc-registry automated BioContainers addition for grapetree |
grapetree, unidecode, ete3, flask, numba, pycc, qhelpconverter, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen |
|
GITHUB
|
quay.io/biocontainers/graph-boink |
shpc-registry automated BioContainers addition for graph-boink |
boink, bugpoint, c-index-test, clang, clang++, clang-8, clang-check, clang-cl, clang-cpp, clang-extdef-mapping, clang-format, clang-import-test, clang-offload-bundler, clang-refactor, clang-rename, cling-config, cppyy-generator, cpuinfo, diagtool, draff, dsymutil, genreflex, git-clang-format, hmaptool, llc, lli, llvm-ar, llvm-as, llvm-bcanalyzer, llvm-c-test, llvm-cat, llvm-cfi-verify, llvm-config, llvm-cov, llvm-cvtres, llvm-cxxdump, llvm-cxxfilt, llvm-cxxmap, llvm-diff, llvm-dis, llvm-dlltool, llvm-dwarfdump, llvm-dwp, llvm-elfabi, llvm-exegesis, llvm-extract, llvm-jitlistener, llvm-lib, llvm-link, llvm-lto, llvm-lto2, llvm-mc, llvm-mca, llvm-modextract, llvm-mt, llvm-nm, llvm-objcopy, llvm-objdump, llvm-opt-report, llvm-pdbutil, llvm-profdata, llvm-ranlib, llvm-rc, llvm-readelf, llvm-readobj, llvm-rtdyld, llvm-size, llvm-split, llvm-stress, llvm-strings, llvm-strip, llvm-symbolizer, llvm-tblgen, llvm-undname, llvm-xray, obj2yaml, opt, pyfiglet, rootcling, sancov, sanstats, scan-build, scan-view, verify-uselistorder, yaml2obj, screed, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, c89, c99 |
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GITHUB
|
quay.io/biocontainers/graph2pro-var |
shpc-registry automated BioContainers addition for graph2pro-var |
DBGraph2Pro, DBGraphPep2Pro, FragGeneScan, combineFragandDBGraph_fastg.py, combineFragandDBGraph_fastg_old.py, combineSpec_files.py, combineThree_o.py, createFixedReverseKR.py, fastg2fasta.py, generate_var2pep_only.py, getProteinFasta.py, getUniquePeptides_files.py, getUniqueProtein_o.py, msgf_plus, parseFDR_o.py, parseFDR_o_peptide.py, parseMismatch.py, patchpos.py, prerapsearch, rapsearch, removeRC.py, replaceID.py, run_FragGeneScan.pl, step1output.py, tryptic.py, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div, cd-hit-div.pl |
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GITHUB
|
quay.io/biocontainers/graph_embed |
shpc-registry automated BioContainers addition for graph_embed |
graphembed, compile-et.pl, prerr.properties, cxpm, sxpm, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config |
|
GITHUB
|
quay.io/biocontainers/graphaligner |
shpc-registry automated BioContainers addition for graphaligner |
GraphAligner |
|
GITHUB
|
quay.io/biocontainers/graphanalyzer |
shpc-registry automated BioContainers addition for graphanalyzer |
colorcet, graphanalyzer.py, holoviews, panel, bokeh, markdown_py, diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare |
|
GITHUB
|
quay.io/biocontainers/graphbin |
shpc-registry automated BioContainers addition for graphbin |
graphbin, igraph, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis, ndmetis, glpsol, f2py3.9, 2to3-3.9 |
|
GITHUB
|
quay.io/biocontainers/graphbin2 |
singularity registry hpc automated addition for graphbin2 |
graphbin2, prepResult, pbr, numpy-config, igraph, numba, glpsol, chardetect, tqdm, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/graphclust-wrappers |
shpc-registry automated BioContainers addition for graphclust-wrappers |
NSPDK_candidateClusters.pl, NSPDK_sparseVect.pl, aggregate_align_metrics.py, alifold.pl, clustal_to_alma.py, extract_conservation_metrics.py, fasta2shrep_gspan.pl, foldFasta.pl, gc_align_clusters.pl, gc_res.pl, gc_res_noalign.pl, glob_res.pl, locARNAGraphClust.pl, mloc2stockholm.pl, newpreMlocarna.pl, preprocessing.pl, rnaclustScores2Dist.pl, scoreAln.pl, structure_2_gspan.pl, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, perl5.26.2 |
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GITHUB
|
quay.io/biocontainers/graphembed |
singularity registry hpc automated addition for graphembed |
graphembed |
|
GITHUB
|
quay.io/biocontainers/graphicsmagick |
shpc-registry automated BioContainers addition for graphicsmagick |
GraphicsMagick++-config, GraphicsMagick-config, GraphicsMagickWand-config, gm, chrpath, g-ir-doc-tool, gnuplot, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, compile-et.pl, gdlib-config |
|
GITHUB
|
quay.io/biocontainers/graphlan |
shpc-registry automated BioContainers addition for graphlan |
__init__.py, graphlan.py, graphlan_annotate.py, graphlan_lib.py, pyphlan.py, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/graphlite |
shpc-registry automated BioContainers addition for graphlite |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/graphmap |
shpc-registry automated BioContainers addition for graphmap |
graphmap2 |
|
GITHUB
|
quay.io/biocontainers/graphmb |
singularity registry hpc automated addition for graphmb |
alembic, databricks, dbfs, elastipubsub5, flatc, graphmb, gunicorn, h5delete, mlflow, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, sqlformat, wsdump, elasticurl, elasticurl_cpp, elastipubsub, torchrun, csv-import, hwloc-gather-cpuid, orc-memory, orc-scan, timezone-dump, import_pb_to_tensorboard, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, orc-contents, orc-metadata |
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GITHUB
|
quay.io/biocontainers/graphprot |
shpc-registry automated BioContainers addition for graphprot |
GraphProt.pl, RNAshapes, gawk-4.2.1, svm-predict, svm-scale, svm-train, transformseq, weblogo, conv-template, from-template, b2sum, awk, base32 |
|
GITHUB
|
quay.io/biocontainers/graphtyper |
shpc-registry automated BioContainers addition for graphtyper |
graphtyper |
|
GITHUB
|
quay.io/biocontainers/greenhill |
singularity registry hpc automated addition for greenhill |
greenhill, gunzip, gzexe, gzip, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zless, zmore, znew, sdust, paftools.js, minimap2, k8 |
|
GITHUB
|
quay.io/biocontainers/grenedalf |
singularity registry hpc automated addition for grenedalf |
grenedalf |
|
GITHUB
|
quay.io/biocontainers/grep |
shpc-registry automated BioContainers addition for grep |
egrep, fgrep, grep, pcregrep |
|
GITHUB
|
quay.io/biocontainers/grequests |
shpc-registry automated BioContainers addition for grequests |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/gretel |
shpc-registry automated BioContainers addition for gretel |
gretel, gretel-snpper, vcf_sample_filter.py, vcf_filter.py, vcf_melt, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
|
GITHUB
|
quay.io/biocontainers/gretl |
singularity registry hpc automated addition for gretl |
block.py, core.py, gretl, multi.auto.py, multi.correlate.py, multi.heatmap.py, multi.histogram.py, multi.scatter.py, nwindow.py, path.py, ps.py, saturation_plotter.py, stats_path.py, window.py, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, tjbench, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/grid |
shpc-registry automated BioContainers addition for grid |
grid, mosdepth, pathoscope, update_database, bamtools, seqtk, CA.pm, cacert.pem, index-themes, parsort, fetch-extras, go.mod, go.sum, hlp-xtract.txt |
|
GITHUB
|
quay.io/biocontainers/gridss |
shpc-registry automated BioContainers addition for gridss |
AllocateEvidence, AnnotateInexactHomology, AnnotateInexactHomologyBedpe, AnnotateReferenceCoverage, AnnotateUntemplatedSequence, AnnotateVariants, AssembleBreakends, CallVariants, CollectCigarMetrics, CollectFragmentGCMetrics, CollectGridssMetrics, CollectGridssMetricsAndExtractFullReads, CollectGridssMetricsAndExtractSVReads, CollectIdsvMetrics, CollectMapqMetrics, CollectStructuralVariantReadMetrics, CollectTagMetrics, ComputeSamTags, ExtractFullReads, ExtractSVReads, GeneratePonBedpe, IdentifyVariants, IndexedExtractFullReads, ReportThresholdCoverage, SoftClipsToSplitReads, gridss, gridss_annotate_insertions_repeatmaster, gridss_somatic_filter, pandoc-citeproc, qualfa2fq.pl, xa2multi.pl, bwa, pandoc, jaotc, aserver, jdeprscan, jhsdb, jimage |
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GITHUB
|
quay.io/biocontainers/grimer |
singularity registry hpc automated addition for grimer |
grimer, h5pcc, h5perf, h5pfc, perf, ph5diff, mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, biom, doesitcache, bokeh, ipython3, ipython, cygdb, cython, cythonize, mpifort, mpic++, mpicc, mpicxx, mpiexec, mpif77, mpif90, mpirun, py.test, pytest |
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GITHUB
|
quay.io/biocontainers/gromacs |
shpc-registry automated BioContainers addition for gromacs |
GMXRC, GMXRC.bash, GMXRC.csh, GMXRC.zsh, completion.bash, completion.csh, completion.zsh, demux.pl, do_dssp, editconf, eneconv, g_anadock, g_anaeig, g_analyze, g_angle, g_bar, g_bond, g_bundle, g_chi, g_cluster, g_clustsize, g_confrms, g_covar, g_current, g_density, g_densmap, g_densorder, g_dielectric, g_dipoles, g_disre, g_dist, g_dos, g_dyecoupl, g_dyndom, g_enemat, g_energy, g_filter, g_gyrate, g_h2order, g_hbond, g_helix, g_helixorient, g_hydorder, g_kinetics, g_lie, g_luck, g_mdmat, g_membed, g_mindist, g_morph, g_msd, g_nmeig, g_nmens, g_nmtraj, g_options, g_order, g_pme_error, g_polystat, g_potential, g_principal, g_protonate, g_rama, g_rdf, g_rms, g_rmsdist, g_rmsf, g_rotacf, g_rotmat, g_saltbr, g_sans, g_sas, g_select, g_sgangle, g_sham, g_sigeps, g_sorient, g_spatial, g_spol, g_tcaf, g_traj, g_tune_pme, g_vanhove, g_velacc, g_wham, g_wheel, g_x2top, genbox, genconf, genion, genrestr, gmxcheck, gmxdump, grompp, make_edi, make_ndx, mdrun, mk_angndx, pdb2gmx, tpbconv, trjcat, trjconv, trjorder, xplor2gmx.pl, xpm2ps |
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GITHUB
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quay.io/biocontainers/gromacs_mpi |
shpc-registry automated BioContainers addition for gromacs_mpi |
gmx_mpi, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info, opal_wrapper, orte-clean, orte-info, orte-server |
|
GITHUB
|
quay.io/biocontainers/gromacs_py |
shpc-registry automated BioContainers addition for gromacs_py |
AddToBox, CartHess2FC.py, ChBox, FEW.pl, GMXRC, GMXRC.bash, GMXRC.csh, GMXRC.zsh, IPMach.py, MCPB.py, MMPBSA.py, OptC4.py, PdbSearcher.py, ProScrs.py, PropPDB, UnitCell, XrayPrep, acpype, add_pdb, add_xray, addles, am1bcc, amb2chm_par.py, amb2chm_psf_crd.py, amb2gro_top_gro.py, ambmask, ambpdb, ante-MMPBSA.py, antechamber, atomtype, bondtype, bondtype.orig, car_to_files.py, ceinutil.py, cestats, charmmlipid2amber.py, cpeinutil.py, cphstats, cpinutil.py, cpptraj, create_peptide.py, create_top.py, demux.pl, draw_membrane2, elsize, equi_3_step.py, espgen, espgen.py, extend.py, ffgbsa, finddgref.py, fitpkaeo.py, fixremdcouts.py, gbnsr6, gem.pmemd, genremdinputs.py, gmx, gmx-completion-gmx.bash, gmx-completion.bash, gwh, hcp_getpdb, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, insert_mol_no_vmd.py, lstopo, lstopo-no-graphics, makeANG_RST, makeDIST_RST, make_crd_hg, mdgx, mdnab, mdout2pymbar.pl, mdout_analyzer.py, memembed, metalpdb2mol2.py, metatwist, minab, minimize_pdb.py, minimize_pdb_and_cyclic.py, mm_pbsa.pl, mm_pbsa_nabnmode, mm_pbsa_statistics.pl, mmpbsa_py_energy, mmpbsa_py_nabnmode, mol2rtf.py, molsurf, mpinab2c, nab, nab2c, nef_to_RST, nf-config, nfe-umbrella-slice, nmode, obfitall, obmm, packmol, packmol-memgen, paramfit, parmcal, parmchk2, parmed, pbsa, pdb2pqr_cli, pdb4amber, prepare_prot.py, prepare_prot_topo_edit.py, prepgen, process_mdout.perl, process_minout.perl, production.py, pymdpbsa, pytleap, reduce, residuegen, resp, respgen, rism1d, rism3d.orave, rism3d.snglpnt, rism3d.thermo, sander, sander.LES, saxs_md, saxs_rism, senergy, sgldinfo.sh, sgldwt.sh, simplepbsa, softcore_setup.py, solvate_ions.py, sqm, sviol, sviol2, teLeap, tleap, top_em_equi_3_step_prod.py, ucpp, xaLeap, xleap, xparmed, xplor2gmx.pl, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop |
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GITHUB
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quay.io/biocontainers/gromacswrapper |
shpc-registry automated BioContainers addition for gromacswrapper |
gw-forcefield.py, gw-join_parts.py, gw-merge_topologies.py, gw-partial_tempering.py, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc |
|
GITHUB
|
quay.io/biocontainers/groopm |
shpc-registry automated BioContainers addition for groopm |
bamFlags, bamm, groopm, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, pt2to3, ptdump, ptrepack, pttree, qualfa2fq.pl |
|
GITHUB
|
quay.io/biocontainers/groot |
shpc-registry automated BioContainers addition for groot |
groot |
|
GITHUB
|
quay.io/biocontainers/group_humann2_uniref_abundances_to_go |
shpc-registry automated BioContainers addition for group_humann2_uniref_abundances_to_go |
compare_gos.py, download_metaphlan2_db.py, fetch_associations.py, find_enrichment.py, go_plot.py, group_humann2_uniref_abundances_to_GO.sh, humann2, humann2_blastx_coverage, humann2_config, humann2_databases, humann2_humann1_kegg, humann2_join_tables, humann2_merge_abundance_tables, humann2_reduce_table, humann2_regroup_table, humann2_rename_table, humann2_renorm_table, humann2_rna_dna_norm, humann2_split_table, humann2_strain_profiler, humann2_test, map_to_slim.py, metaphlan2.py, metaphlan2krona.py, ncbi_gene_results_to_python.py, plot_go_term.py, prt_terms.py, pyqi, wr_hier.py, wr_sections.py, biom, vba_extract.py, diamond, cxpm, sxpm, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l |
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GITHUB
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quay.io/biocontainers/gs-tama |
shpc-registry automated BioContainers addition for gs-tama |
__init__.py, _config.yml, tama_bed_extract_cds.py, tama_cds_regions_bed_add.py, tama_collapse.py, tama_convert_bed_gtf_ensembl_no_cds.py, tama_convert_bed_gtf_ensembl_orf_nmd.py, tama_convert_nanopore_fastq_fasta.py, tama_degradation_signature.py, tama_fasta_splitter.py, tama_filter_primary_transcripts_orf.py, tama_find_model_changes.py, tama_flnc_polya_cleanup.py, tama_format_gff_to_bed12_cupcake.py, tama_format_gtf_to_bed12_ensembl.py, tama_format_gtf_to_bed12_ncbi.py, tama_format_gtf_to_bed12_stringtie.py, tama_format_id_filter.py, tama_mapped_sam_splitter.py, tama_merge.py, tama_orf_blastp_parser.py, tama_orf_seeker.py, tama_read_support_collapse_cluster.py, tama_read_support_levels.py, tama_read_support_merge_collapse.py, tama_remove_fragment_models.py, tama_remove_polya_models_levels.py, tama_remove_single_read_models_levels.py, tama_sampling_saturation_curve.py, tama_variant_caller.py, tmp.py, filter-table, spdi2prod, metadata_conda_debug.yaml, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene |
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GITHUB
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quay.io/biocontainers/gsalign |
shpc-registry automated BioContainers addition for gsalign |
GSAlign, bwt_index |
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GITHUB
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quay.io/biocontainers/gsea |
singularity registry hpc automated addition for gsea |
gsea, gsea-cli, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap, jps |
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GITHUB
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quay.io/biocontainers/gseapy |
shpc-registry automated BioContainers addition for gseapy |
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GITHUB
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quay.io/biocontainers/gsearch |
singularity registry hpc automated addition for gsearch |
request, tohnsw |
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GITHUB
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quay.io/biocontainers/gsmap |
singularity registry hpc automated addition for gsmap |
checksum-profile, elastishadow, gsmap, protoc-27.5.0, pyfiglet, kaleido, mathjax-path, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, elastipubsub5, h5tools_test_utils, mqtt5_app, mqtt5_canary, mqtt5canary, scanpy, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, h5fuse.sh, orc-contents, orc-metadata, orc-statistics |
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GITHUB
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quay.io/biocontainers/gsort |
shpc-registry automated BioContainers addition for gsort |
gsort |
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GITHUB
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quay.io/biocontainers/gtdb_to_taxdump |
singularity registry hpc automated addition for gtdb_to_taxdump |
acc2gtdb_tax.py, gtdb_to_diamond.py, gtdb_to_taxdump.py, lineage2taxid.py, ncbi-gtdb_map.py, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tqdm |
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GITHUB
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quay.io/biocontainers/gtdbtk |
shpc-registry automated BioContainers addition for gtdbtk |
download-db.sh, gtdbtk, hmmc2, hmmerfm-exactmatch, rppr, guppy, pplacer, fastANI, dendropy-format, capnp, capnpc, capnpc-c++, capnpc-capnp, mash |
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GITHUB
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quay.io/biocontainers/gtf_to_genes |
shpc-registry automated BioContainers addition for gtf_to_genes |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/gtfparse |
shpc-registry automated BioContainers addition for gtfparse |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/gtfsort |
singularity registry hpc automated addition for gtfsort |
gtfsort |
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GITHUB
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quay.io/biocontainers/gtftools |
singularity registry hpc automated addition for gtftools |
gtftools, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/gtotree |
singularity registry hpc automated addition for gtotree |
GToTree, bundle, bundler, dos2unix, exec_annotation, f2py3.11, file, gtt-align-and-trim-parallel.sh, gtt-amino-acid-parallel.sh, gtt-amino-acid-serial.sh, gtt-append-fasta-headers, gtt-cat-alignments, gtt-check-or-setup-GTDB-files, gtt-check-wanted-lineage-info, gtt-clean-after-test.sh, gtt-combine-kofamscan-results.sh, gtt-count-bases-per-seq, gtt-data-locations, gtt-fasta-parallel.sh, gtt-fasta-serial.sh, gtt-filter-parallel.sh, gtt-filter-seqs-by-length, gtt-gen-KO-iToL-files.sh, gtt-gen-SCG-HMMs, gtt-gen-itol-map, gtt-gen-pfam-iToL-files.sh, gtt-genbank-parallel.sh, gtt-genbank-serial.sh, gtt-genbank-to-AA-seqs, gtt-genbank-to-fasta, gtt-get-accessions-from-GTDB, gtt-get-additional-pfam-targets.sh, gtt-get-kofamscan-data, gtt-get-median.sh, gtt-get-ncbi-tax-data, gtt-hmms, gtt-ncbi-parallel.sh, gtt-ncbi-serial.sh, gtt-parse-assembly-summary-file, gtt-parse-fasta-by-headers, gtt-parse-gtdb-assembly-summary-file, gtt-parse-kofamscan-targets.sh, gtt-pfam-search, gtt-remove-all-gap-seqs-from-alignment, gtt-rename-fasta-headers, gtt-reorder-fasta, gtt-run-additional-pfam-search.sh, gtt-run-kofamscan.sh, gtt-store-SCG-HMMs, gtt-subset-GTDB-accessions, gtt-swap-ids, gtt-test.sh, gtt-update-ncbi-taxonomy, gunzip, gzexe, gzip, iqtree2, mac2unix, racc, rbs, rdbg, taxonkit, typeprof, uncompress, unix2dos, unix2mac, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zmore, znew, readal, statal, trimal, 2to3-3.11, gdbm_dump, gdbm_load, gdbmtool, idle3.11, pydoc3.11, python3.11, python3.11-config, erb, gem, iqtree, irb, rake, rdoc, ri, ruby, bc, dc, FastTreeMP, muscle, FastTree, fasttree |
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GITHUB
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quay.io/biocontainers/gubbins |
shpc-registry automated BioContainers addition for gubbins |
extract_gubbins_clade.py, generate_ska_alignment.py, gubbins, gubbins_alignment_checker.py, mask_gubbins_aln.py, rapidnj, raxml-ng, raxml-ng-mpi, run_gubbins.py, ska, iqtree, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, dendropy-format, get_objgraph, undill |
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GITHUB
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quay.io/biocontainers/guessmylt |
shpc-registry automated BioContainers addition for guessmylt |
GUESSmyLT, GUESSmyLT-example, PtR, SplicedAlignment.pm, Trinity, TrinityStats.pl, Trinity_gene_splice_modeler.py, abundance_estimates_to_matrix.pl, align_and_estimate_abundance.pl, analyze_blastPlus_topHit_coverage.pl, analyze_diff_expr.pl, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, autoRun.pathInfo, b2, bam2wig, bamtools-2.4.1, bedgraph2wig.pl, bjam, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, cegma2gff.pl, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, contig_ExN50_statistic.pl, createAugustusJoblist.pl, define_clusters_by_cutting_tree.pl, del_from_prfl.pl, espoca, evalCGP.pl, eval_dualdecomp.pl, exonerate2hints.pl, exoniphyDb2hints.pl, extractTranscriptEnds.pl, extract_supertranscript_from_reference.py, filter-ppx.pl, filterGenes.pl, filterGenesIn_mRNAname.pl, filterGenesIn_mRNAname.pl.patch, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, filter_low_expr_transcripts.pl, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, generate_plot, generate_plot.py, getAnnoFasta.pl, getSeq, get_Trinity_gene_to_trans_map.pl, gff2gbSmallDNA.pl, gff2ps_mycustom, gffGetmRNA.pl, gp2othergp.pl, gtf2gff.pl, gtf2gff.pl.origexit, hal2maf_split.pl, helpMod.pm, insilico_read_normalization.pl, intron2exex.pl, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, load2sqlitedb, lp_solve, maf2conswig.pl, makeMatchLists.pl, makeUtrTrainingSet.pl, maskNregions.pl, moveParameters.pl, msa2prfl.pl, new_species.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, peptides2alternatives.pl, peptides2hints.pl, phastconsDB2hints.pl, polyA2hints.pl, prints2prfl.pl, pslMap.pl, randomSplit.pl, ratewig.pl, retrieve_sequences_from_fasta.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, run_BUSCO.py, run_DE_analysis.pl, run_DE_analysis_from_samples_file.pl, run_Trinity_from_samples_file.pl, run_busco, run_expr_quantification_from_samples_file.pl, samMap.pl, scipiogff2gff.pl, seqtk-trinity, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, splitMfasta.pl, split_wiggle.pl, summarizeACGTcontent.pl, transMap2hints.pl, uniquePeptides.pl, utrgff2gbrowse.pl, webserver-results.body, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, yaml2gff.1.4.pl, augustus, bam2hints, etraining, fastBlockSearch, filterBam, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign, salmon |
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GITHUB
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quay.io/biocontainers/guide-counter |
singularity registry hpc automated addition for guide-counter |
guide-counter |
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GITHUB
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quay.io/biocontainers/guidemaker |
shpc-registry automated BioContainers addition for guidemaker |
base58, black, black-primer, blackd, csv-import, elasticurl, elasticurl_cpp, elastipubsub, guidemaker, jupyter-dejavu, jupyter-execute, onnxruntime_test, orc-memory, orc-scan, pdoc, pdoc3, pybind11-config, send2trash, streamlit, streamlit.cmd, timezone-dump, watchmedo, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, coverage, gflags_completions.sh, mako-render, grpc_cpp_plugin |
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GITHUB
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quay.io/biocontainers/guidescan |
shpc-registry automated BioContainers addition for guidescan |
guidescan_bamdata, guidescan_cutting_efficiency_processer, guidescan_cutting_specificity_processer, guidescan_guidequery, guidescan_processer, rename, enhancer.py, explode.py, gifmaker.py, painter.py, player.py, thresholder.py, viewer.py, pilconvert.py, pildriver.py |
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GITHUB
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quay.io/biocontainers/gum |
singularity registry hpc automated addition for gum |
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GITHUB
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quay.io/biocontainers/gunc |
shpc-registry automated BioContainers addition for gunc |
gunc, diamond, prodigal, chardetect, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/gustaf |
shpc-registry automated BioContainers addition for gustaf |
gustaf, gustaf_mate_joining |
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GITHUB
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quay.io/biocontainers/gvcf-regions |
shpc-registry automated BioContainers addition for gvcf-regions |
gvcf_regions.py, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/gvcf2bed |
shpc-registry automated BioContainers addition for gvcf2bed |
gvcf2bed, cyvcf2, coloredlogs, vcf_sample_filter.py, humanfriendly, vcf_filter.py, vcf_melt, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7 |
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GITHUB
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quay.io/biocontainers/gvcf2coverage |
shpc-registry automated BioContainers addition for gvcf2coverage |
gvcf2coverage, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/gvcfgenotyper |
shpc-registry automated BioContainers addition for gvcfgenotyper |
gvcfgenotyper |
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GITHUB
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quay.io/biocontainers/gvcftools |
shpc-registry automated BioContainers addition for gvcftools |
break_blocks, check_reference, extract_variants, gatk_to_gvcf, getBamAvgChromDepth.pl, get_called_regions, merge_variants, remove_region, set_haploid_region, trio, twins, perl5.26.2, podselect |
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GITHUB
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quay.io/biocontainers/gwama |
shpc-registry automated BioContainers addition for gwama |
GWAMA |
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GITHUB
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quay.io/biocontainers/gxf2bed |
singularity registry hpc automated addition for gxf2bed |
gxf2bed |
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GITHUB
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quay.io/biocontainers/gxformat2 |
shpc-registry automated BioContainers addition for gxformat2 |
bioblend-galaxy-tests, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier |
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GITHUB
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quay.io/biocontainers/gzrt |
singularity registry hpc automated addition for gzrt |
gzrecover |
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GITHUB
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quay.io/biocontainers/h5sparse |
singularity registry hpc automated addition for h5sparse |
f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp, h5perf_serial, h5redeploy, h5repack, h5repart, h5stat, h5unjam |
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GITHUB
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quay.io/biocontainers/hackgap |
singularity registry hpc automated addition for hackgap |
hackgap, numpy-config, pigz, unpigz, numba, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/haddock_biobb |
singularity registry hpc automated addition for haddock_biobb |
addr2line, ar, as, c++, c++filt, cc, cpp, dwp, elfedit, g++, gcc, gcc-ar, gcc-nm, gcc-ranlib, gcov, gcov-dump, gcov-tool, gold, gprof, haddock3, haddock3-analyse, haddock3-bm, haddock3-cfg, haddock3-clean, haddock3-copy, haddock3-dmn, haddock3-mpitask, haddock3-pp, haddock3-restraints, haddock3-score, haddock3-traceback, haddock3-unpack, kaleido, ld, ld.bfd, ld.gold, mathjax-path, nm, objcopy, objdump, pdb_b, pdb_chain, pdb_chainbows, pdb_chainxseg, pdb_chkensemble, pdb_delchain, pdb_delelem, pdb_delhetatm, pdb_delinsertion, pdb_delres, pdb_delresname, pdb_element, pdb_fetch, pdb_fixinsert, pdb_fromcif, pdb_gap, pdb_head, pdb_intersect, pdb_keepcoord, pdb_merge, pdb_mkensemble, pdb_occ, pdb_reatom, pdb_reres, pdb_rplchain, pdb_rplresname, pdb_seg, pdb_segxchain, pdb_selaltloc, pdb_selatom, pdb_selchain, pdb_selelem, pdb_selhetatm, pdb_selmodel, pdb_selres, pdb_selresname, pdb_selseg, pdb_shiftres, pdb_sort, pdb_splitchain, pdb_splitmodel, pdb_splitseg, pdb_tidy, pdb_tocif, pdb_tofasta, pdb_uniqname, pdb_validate, pdb_wc, ranlib, readelf, size, strings, strip, tox, virtualenv, scalar, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, certutil, nspr-config, nss-config, pk12util, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, chardetect |
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GITHUB
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quay.io/biocontainers/hafez |
shpc-registry automated BioContainers addition for hafez |
a3m_database_extract, a3m_database_filter, a3m_database_reduce, a3m_extract, a3m_reduce, cstranslate, ffindex_apply, ffindex_build, ffindex_from_fasta, ffindex_from_fasta_with_split, ffindex_get, ffindex_modify, ffindex_order, ffindex_reduce, ffindex_unpack, hafeZ.py, hhalign, hhalign_omp, hhblits, hhblits_ca3m, hhblits_omp, hhconsensus, hhfilter, hhmake, hhsearch, hhsearch_omp, ldc-build-runtime, ldc-profdata, ldc-prune-cache, ldc2, ldmd2, mosdepth, sambamba, filter-table, kmutate.sh, runhmm.sh, spdi2prod, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh |
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GITHUB
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quay.io/biocontainers/hail |
shpc-registry automated BioContainers addition for hail |
beeline, beeline.cmd, bq, docker-credential-gcloud, docker-image-tool.sh, find-spark-home, find-spark-home.cmd, find_spark_home.py, gcloud, hailctl, load-spark-env.cmd, load-spark-env.sh, pyspark, pyspark.cmd, pyspark2.cmd, run-example, run-example.cmd, spark-class, spark-class.cmd, spark-class2.cmd, spark-shell, spark-shell.cmd, spark-shell2.cmd, spark-sql, spark-sql.cmd, spark-sql2.cmd, spark-submit, spark-submit.cmd, spark-submit2.cmd, sparkR, sparkR.cmd, sparkR2.cmd, gsutil, google-oauthlib-tool, clhsdb, hsdb, get_objgraph, undill, bokeh, tabulate, pyrsa-decrypt, pyrsa-encrypt |
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GITHUB
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quay.io/biocontainers/hairsplitter |
singularity registry hpc automated addition for hairsplitter |
HS_GenomeTailor, HS_call_variants, HS_create_new_contigs, HS_fa2gfa, HS_gfa2fa, HS_separate_reads, cut_gfa.py, determine_multiplicity.py, finish_untangling.py, graphunzip.py, hairsplitter.py, input_output.py, minigraph, raven, repolish.py, segment.py, simple_unzip.py, transform_gfa.py, annot-tsv, rampler, racon, racon_wrapper, sdust, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, k8, paftools.js, minimap2, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats |
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GITHUB
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quay.io/biocontainers/halfdeep |
singularity registry hpc automated addition for halfdeep |
bam_depth.sh, gawk-5.3.1, genodsp, halfdeep.r, halfdeep.sh, scaffold_lengths.py, x86_64-conda-linux-gnu.cfg, bash, bashbug, idle3.13, pydoc3.13, python3.13, python3.13-config, gunzip, gzexe, gzip, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zmore, znew, egrep, fgrep, grep, gawkbug, annot-tsv, basenc |
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GITHUB
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quay.io/biocontainers/halla |
shpc-registry automated BioContainers addition for halla |
halla, halladata, hallagram, hallascatter, g-ir-doc-tool, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, f2py3.6, qhelpconverter, gtk-builder-convert, gtk-demo |
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GITHUB
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quay.io/biocontainers/hamip |
shpc-registry automated BioContainers addition for hamip |
HaMiP, LiBis, bamsort.sh, bbf, bseqc2, bseqc2mbiasplot.R, bsmap, fetchChromSizes, mcall, mcomp, moabs, numCI, pefilter, preprocess_novoalign.sh, redepth.pl, routines.pm, template_for_cfg, template_for_qsub, trim_galore, cutadapt, fastqc, gawk-5.1.0, awk, gawk, pigz, unpigz, my_print_defaults, mysql_config, perror |
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GITHUB
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quay.io/biocontainers/hamroaster |
shpc-registry automated BioContainers addition for hamroaster |
hAMRoaster, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/hamronization |
shpc-registry automated BioContainers addition for hamronization |
hamronize, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/handyreadgenotyper |
singularity registry hpc automated addition for handyreadgenotyper |
classifier_report.py, classify, classify.py, data_classes.py, genotyper_data_classes.py, input_processing.py, inputs_validation.py, map.py, model_manager.py, read_classifier.py, train, train.py, annot-tsv, sdust, k8, paftools.js, minimap2, f2py3.8, fasta-sanitize.pl, plot-ampliconstats, tqdm, normalizer, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl |
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GITHUB
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quay.io/biocontainers/hanselx |
shpc-registry automated BioContainers addition for hanselx |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/hap-ibd |
shpc-registry automated BioContainers addition for hap-ibd |
hap-ibd, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink |
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GITHUB
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quay.io/biocontainers/hap.py |
shpc-registry automated BioContainers addition for hap.py |
alleles, bamstats.py, blocksplit, cnx.py, dipenum, fastainfo, ftx.py, gvcf2bed, hap.py, hapcmp, hapenum, multimerge, ovc.py, pre.py, preprocess, qfy.py, quantify, roc, scmp, som.py, test_haplotypes, validatevcf, vcfhdr2json, xcmp, vcfcheck, intersection_matrix.py, intron_exon_reads.py, nosetests, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py |
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GITHUB
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quay.io/biocontainers/hapbin |
shpc-registry automated BioContainers addition for hapbin |
ehhbin, hapbinconv, xpehhbin |
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GITHUB
|
quay.io/biocontainers/hapcut2 |
shpc-registry automated BioContainers addition for hapcut2 |
HAPCUT2, LinkFragments.py, calculate_haplotype_statistics.py, extractHAIRS, hapcut2, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/hapflk |
shpc-registry automated BioContainers addition for hapflk |
hapflk, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/haphpipe |
shpc-registry automated BioContainers addition for haphpipe |
GenomeAnalysisTK, abi-dump.2.10.8, align-cache.2.10.8, align-info.2.10.8, bam-load.2.10.8, cache-mgr.2.10.8, cg-load.2.10.8, fasterq-dump-orig.2.10.8, fasterq-dump.2.10.8, fastq-dump-orig.2.10.8, fastq-dump.2.10.8, gatk3, gatk3-register, gen_client, haphpipe, haphpipe_assemble_01, haphpipe_assemble_02, haphpipe_demo, hp_align_reads, hp_assemble_amplicons, hp_assemble_denovo, hp_assemble_scaffold, hp_build_tree_NG, hp_call_variants, hp_cliquesnv, hp_demo, hp_ec_reads, hp_extract_pairwise, hp_finalize_assembly, hp_join_reads, hp_model_test, hp_multiple_align, hp_pairwise_align, hp_ph_parser, hp_predict_haplo, hp_refine_assembly, hp_sample_reads, hp_summary_stats, hp_trim_reads, hp_vcf_to_consensus, illumina-dump.2.10.8, kar.2.10.8, kdbmeta.2.10.8, kget.2.10.8, latf-load.2.10.8, md5cp.2.10.8, modeltest-ng, prefetch-orig.2.10.8, prefetch.2.10.8, raxml-ng, raxml-ng-mpi, rcexplain.2.10.8, read-filter-redact.2.10.8, sam-dump-orig.2.10.8, sam-dump.2.10.8, sff-dump.2.10.8, sierrapy, sra-pileup-orig.2.10.8, sra-pileup.2.10.8, sra-sort-cg.2.10.8, sra-sort.2.10.8, sra-stat.2.10.8, srapath-orig.2.10.8, srapath.2.10.8, sratools.2.10.8, test-sra.2.10.8, vdb-config.2.10.8, vdb-copy.2.10.8, vdb-decrypt.2.10.8, vdb-diff.2.10.8, vdb-dump-orig.2.10.8, vdb-dump.2.10.8, vdb-encrypt.2.10.8, vdb-lock.2.10.8, vdb-passwd.2.10.8, vdb-unlock.2.10.8, vdb-validate.2.10.8, gsutil, align-cache.2, md5cp.2, pbr, read-filter-redact.2, sra-sort-cg.2, vdb-diff.2, align-cache, fasterq-dump-orig, fastq-dump-orig |
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GITHUB
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quay.io/biocontainers/haplink |
singularity registry hpc automated addition for haplink |
7z, 7za, 7zr, git2, haplink, julia, mbedtls_aead_demo, mbedtls_benchmark, mbedtls_cert_app, mbedtls_cert_req, mbedtls_cert_write, mbedtls_cipher_aead_demo, mbedtls_crl_app, mbedtls_crypt_and_hash, mbedtls_crypto_examples, mbedtls_dh_client, mbedtls_dh_genprime, mbedtls_dh_server, mbedtls_dtls_client, mbedtls_dtls_server, mbedtls_ecdh_curve25519, mbedtls_ecdsa, mbedtls_gen_entropy, mbedtls_gen_key, mbedtls_gen_random_ctr_drbg, mbedtls_generic_sum, mbedtls_hello, mbedtls_hmac_demo, mbedtls_key_app, mbedtls_key_app_writer, mbedtls_key_ladder_demo, mbedtls_key_ladder_demo.sh, mbedtls_load_roots, mbedtls_md_hmac_demo, mbedtls_mini_client, mbedtls_mpi_demo, mbedtls_pem2der, mbedtls_pk_decrypt, mbedtls_pk_encrypt, mbedtls_pk_sign, mbedtls_pk_verify, mbedtls_psa_constant_names, mbedtls_query_compile_time_config, mbedtls_req_app, mbedtls_rsa_decrypt, mbedtls_rsa_encrypt, mbedtls_rsa_genkey, mbedtls_rsa_sign, mbedtls_rsa_sign_pss, mbedtls_rsa_verify, mbedtls_rsa_verify_pss, mbedtls_selftest, mbedtls_ssl_client1, mbedtls_ssl_client2, mbedtls_ssl_context_info, mbedtls_ssl_fork_server, mbedtls_ssl_mail_client, mbedtls_ssl_pthread_server, mbedtls_ssl_server, mbedtls_ssl_server2, mbedtls_strerror, mbedtls_udp_proxy, mbedtls_zeroize, scalar, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, cmpfillin, gpmetis, graphchk, m2gmetis |
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GITHUB
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quay.io/biocontainers/haplocheck |
shpc-registry automated BioContainers addition for haplocheck |
cloudgene.yaml, haplocheck, haplocheck.jar, mutserve.jar, rCRS.fasta, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/haploclique |
shpc-registry automated BioContainers addition for haploclique |
bamtools-2.4.1, haploclique, bamtools, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config |
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GITHUB
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quay.io/biocontainers/haploconduct |
shpc-registry automated BioContainers addition for haploconduct |
haploconduct, kallisto, rust-overlaps, qualfa2fq.pl, xa2multi.pl, bwa, f2py2, f2py2.7, fasta-sanitize.pl, plot-ampliconstats, python2-config, python2.7-config, python2 |
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GITHUB
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quay.io/biocontainers/haploflow |
shpc-registry automated BioContainers addition for haploflow |
haploflow |
|
GITHUB
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quay.io/biocontainers/haplogrep |
shpc-registry automated BioContainers addition for haplogrep |
haplogrep, haplogrep.jar, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/haplomap |
singularity registry hpc automated addition for haplomap |
haplomap |
|
GITHUB
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quay.io/biocontainers/haplotaglr |
singularity registry hpc automated addition for haplotaglr |
HaplotagLR, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/haplotype-lso |
shpc-registry automated BioContainers addition for haplotype-lso |
abi-dump.2.10.8, align-cache.2.10.8, align-info.2.10.8, alignmentSieve, bam-load.2.10.8, bamCompare, bamCoverage, bamPEFragmentSize, bigWigToBedGraph, bigwigCompare, bioawk, bioconvert, bioconvert_init, bioconvert_sniffer, bioconvert_stats, cache-mgr.2.10.8, cg-load.2.10.8, computeGCBias, computeMatrix, computeMatrixOperations, correctGCBias, dash-generate-components, deeptools, dsrc, estimateReadFiltering, estimateScaleFactor, fasterq-dump-orig.2.10.8, fasterq-dump.2.10.8, fastq-dump-orig.2.10.8, fastq-dump.2.10.8, go, gofmt, hlso, illumina-dump.2.10.8, kar.2.10.8, kdbmeta.2.10.8, kget.2.10.8, latf-load.2.10.8, ldc-build-runtime, ldc-profdata, ldc-prune-cache, ldc2, ldmd2, mawk, md5cp.2.10.8, multiBamSummary, multiBigwigSummary, plink, plotCorrelation, plotCoverage, plotEnrichment, plotFingerprint, plotHeatmap, plotPCA, plotProfile, prefetch-orig.2.10.8, prefetch.2.10.8, rcexplain.2.10.8, read-filter-redact.2.10.8, renderer, sam-dump-orig.2.10.8, sam-dump.2.10.8, sff-dump.2.10.8, squizz, sra-pileup-orig.2.10.8, sra-pileup.2.10.8, sra-sort-cg.2.10.8, sra-sort.2.10.8, sra-stat.2.10.8, srapath-orig.2.10.8, srapath.2.10.8, sratools.2.10.8, test-sra.2.10.8, vdb-config.2.10.8, vdb-copy.2.10.8, vdb-decrypt.2.10.8, vdb-diff.2.10.8, vdb-dump-orig.2.10.8, vdb-dump.2.10.8, vdb-encrypt.2.10.8, vdb-lock.2.10.8, vdb-passwd.2.10.8, vdb-unlock.2.10.8, vdb-validate.2.10.8, wiggletools, easydev_buildPackage, ibrowse, multigit, sambamba, align-cache.2, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel |
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GITHUB
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quay.io/biocontainers/haploview |
shpc-registry automated BioContainers addition for haploview |
haploview, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/hapog |
singularity registry hpc automated addition for hapog |
hapog, hapog_bin, sdust, paftools.js, minimap2, k8, qualfa2fq.pl, xa2multi.pl, bwa, fasta-sanitize.pl, plot-ampliconstats, f2py3.10, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl |
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GITHUB
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quay.io/biocontainers/happer |
shpc-registry automated BioContainers addition for happer |
happer, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/happy-python |
singularity registry hpc automated addition for happy-python |
happy, ldc-build-runtime, ldc-profdata, ldc-prune-cache, ldc2, ldmd2, sambamba, f2py3.11, sdust, k8, paftools.js, minimap2, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fasta-sanitize.pl, plot-ampliconstats, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer |
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GITHUB
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quay.io/biocontainers/haproh |
shpc-registry automated BioContainers addition for haproh |
hapConX, hapCon_ROH, cygdb, cython, cythonize, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, fonttools, pyftmerge, pyftsubset |
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GITHUB
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quay.io/biocontainers/hapsolo |
singularity registry hpc automated addition for hapsolo |
PF00225_full.blocks.txt, PF00225_seed.blocks.txt, SplicedAlignment.pm, aa2nonred.pl, add_name_to_gff3.pl, aln2wig, augustify.py, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, bam2wig, bamToWig.py, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, braker.pl, cdbfasta, cdbyank, cegma2gff.pl, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, compare_masking.pl, compileSpliceCands, computeFlankingRegion.pl, createAugustusJoblist.pl, del_from_prfl.pl, evalCGP.pl, eval_dualdecomp.pl, eval_multi_gtf.pl, executeTestCGP.py, exonerate2hints.pl, exoniphyDb2hints.pl, extractAnno.py, extractTranscriptEnds.pl, filter-ppx.pl, filterGenemark.pl, filterGenes.pl, filterGenesIn.pl, filterGenesIn_mRNAname.pl, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterIntronsFindStrand.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, findGffNamesInFasta.pl, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, generate_plot, generate_plot.py, getAnnoFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, getSeq, get_loci_from_gb.pl, gff2gbSmallDNA.pl, gff2ps_mycustom, gffGetmRNA.pl, gp2othergp.pl, gtf2aa.pl, gtf2gff.pl, gth2gtf.pl, hal2maf_split.pl, hapsolo.py, helpMod.pm, icarus.py, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, load2sqlitedb, lp_solve, maf2conswig.pl, makeMatchLists.pl, makeUtrTrainingSet.pl, maskNregions.pl, merge_masking.pl, metaquast, metaquast.py, moveParameters.pl, msa2prfl.pl, new_species.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, peptides2alternatives.pl, peptides2hints.pl, phastconsDB2hints.pl, polyA2hints.pl, pp_simScore, preprocessfasta.py, prints2prfl.pl, pslMap.pl, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, randomSplit.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, run_BUSCO.py, run_busco, samMap.pl, scipiogff2gff.pl, setStopCodonFreqs.pl, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, splitMfasta.pl, split_wiggle.pl, summarizeACGTcontent.pl, transMap2hints.pl, uniquePeptides.pl, utrgff2gbrowse.pl, utrrnaseq, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, yaml2gff.1.4.pl, augustus, bam2hints, etraining, fastBlockSearch, filterBam, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign, circos, circos.exe, compile.bat, compile.make, gddiag, glimmerhmm, glimmhmm.pl, list.modules, test.modules, trainGlimmerHMM, blat, twoBitInfo, faToTwoBit, config_data, bamtools, mapview |
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GITHUB
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quay.io/biocontainers/haptools |
singularity registry hpc automated addition for haptools |
haptools, cyvcf2, coloredlogs, humanfriendly, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, htsfile, bgzip, tabix, python3.1, jpgicc, linkicc, psicc, tificc |
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GITHUB
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quay.io/biocontainers/hardklor |
shpc-registry automated BioContainers addition for hardklor |
hardklor |
|
GITHUB
|
quay.io/biocontainers/harmony-pytorch |
shpc-registry automated BioContainers addition for harmony-pytorch |
convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/harmonypy |
shpc-registry automated BioContainers addition for harmonypy |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/harpy |
singularity registry hpc automated addition for harpy |
HAPCUT2, LEVIATHAN, LRez, LinkFragments.py, align-bwa.smk, align-ema.smk, bxStats.py, calculate_haplotype_statistics.py, dadaist2-mergeseqs, datamash, decorate, demultiplex.smk, demux.config.py, ema-h, extractHAIRS, filterBXBAM.py, fixBX.py, fu-16Sregion, fu-cov, fu-homocomp, fu-index, fu-msa, fu-multirelabel, fu-nanotags, fu-orf, fu-primers, fu-shred, fu-split, fu-sw, fu-tabcheck, fu-virfilter, hapcut2, harpy, hb-info, hpc_profile.py, impute.smk, jsondiff, jsonpatch, jsonpointer, makewindows.py, moleculeSize.py, paramspace.py, phase-simple.smk, phase.smk, protoc-23.1.0, reportBcftools.Rmd, reportBxStats.Rmd, reportEmaCount.Rmd, reportGencov.Rmd, reportHapCut2.Rmd, reportLeviathan.Rmd, reportLeviathanPop.Rmd, reportStitch.Rmd, secondary2split.py, seqfu, stitch_impute.R, trim.smk, variants-leviathan-pop.smk, variants-leviathan.smk, variants-mpileup.smk, writeBED.pl, rich-click, ldc-build-runtime, ldc-profdata, ldc-prune-cache, ldc2, ldmd2, mamba-package, markdown-it, multiqc, sambamba, conda2solv, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, bsdcat, bsdcpio, bsdtar, rsync-ssl, rsync, conda-env, cph, fastp |
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GITHUB
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quay.io/biocontainers/harvest-variants |
shpc-registry automated BioContainers addition for harvest-variants |
Phi, Profile, abi-dump.2.10.9, align-cache.2.10.9, align-info.2.10.9, bam-load.2.10.9, cache-mgr.2.10.9, cg-load.2.10.9, extend.py, fasterq-dump-orig.2.10.9, fasterq-dump.2.10.9, fastq-dump-orig.2.10.9, fastq-dump.2.10.9, harvesttools, hv-pipeline.py, illumina-dump.2.10.9, kar.2.10.9, kdbmeta.2.10.9, kget.2.10.9, latf-load.2.10.9, lofreq, lofreq2_call_pparallel.py, lofreq2_indel_ovlp.py, lofreq2_somatic.py, lofreq2_vcfplot.py, logger.py, md5cp.2.10.9, parsnp, prefetch-orig.2.10.9, prefetch.2.10.9, rcexplain.2.10.9, read-filter-redact.2.10.9, sam-dump-orig.2.10.9, sam-dump.2.10.9, sff-dump.2.10.9, sra-pileup-orig.2.10.9, sra-pileup.2.10.9, sra-sort-cg.2.10.9, sra-sort.2.10.9, sra-stat.2.10.9, sra2vcf.py, srapath-orig.2.10.9, srapath.2.10.9, sratools.2.10.9, template.ini, test-sra.2.10.9, vdb-config.2.10.9, vdb-copy.2.10.9, vdb-decrypt.2.10.9, vdb-diff.2.10.9, vdb-dump-orig.2.10.9, vdb-dump.2.10.9, vdb-encrypt.2.10.9, vdb-lock.2.10.9, vdb-passwd.2.10.9, vdb-unlock.2.10.9, vdb-validate.2.10.9, align-cache.2, md5cp.2, read-filter-redact.2, sra-sort-cg.2, vdb-diff.2, align-cache, fasterq-dump-orig, fastp, fastq-dump-orig, md5cp |
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GITHUB
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quay.io/biocontainers/harvesttools |
shpc-registry automated BioContainers addition for harvesttools |
harvesttools |
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GITHUB
|
quay.io/biocontainers/haslr |
shpc-registry automated BioContainers addition for haslr |
fastutils, gatb-h5dump, haslr.py, haslr_assemble, merci, minia, minia_nooverlap, sdust, paftools.js, minimap2, k8, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
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GITHUB
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quay.io/biocontainers/hat-phasing |
singularity registry hpc automated addition for hat-phasing |
HAT, fonttools, pyftmerge, pyftsubset, ttx, brotli, img2webp, cwebp, dwebp, gif2webp, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, gif2rgb, gifbuild, gifclrmp, giffix, giftext, giftool, jpgicc |
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GITHUB
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quay.io/biocontainers/hatchet |
shpc-registry automated BioContainers addition for hatchet |
hatchet, pyomo, gff2gff.py, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, fasta-sanitize.pl, plot-ampliconstats |
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GITHUB
|
quay.io/biocontainers/haystac |
shpc-registry automated BioContainers addition for haystac |
haystac, pulptest, cbc, clp, snakemake, snakemake-bash-completion, jupyter-trust, jupyter, jupyter-migrate, jupyter-troubleshoot, rst2html4.py |
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GITHUB
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quay.io/biocontainers/haystack_bio |
shpc-registry automated BioContainers addition for haystack_bio |
bigWigAverageOverBed, font2c, haystack_download_genome, haystack_hotspots, haystack_motifs, haystack_pipeline, haystack_run_test, haystack_tf_activity_plane, innochecksum, msql2mysql, myisam_ftdump, myisamchk, myisamlog, myisampack, mysql, mysql_client_test, mysql_convert_table_format, mysql_find_rows, mysql_fix_extensions, mysql_plugin, mysql_secure_installation, mysql_setpermission, mysql_tzinfo_to_sql, mysql_upgrade, mysql_waitpid, mysql_zap, mysqlaccess, mysqlaccess.conf, mysqladmin, mysqlbinlog, mysqlbug, mysqlcheck, mysqld, mysqld_multi, mysqld_safe, mysqldump, mysqldumpslow, mysqlhotcopy, mysqlimport, mysqlshow, mysqlslap, mysqltest, replace, resolve_stack_dump, resolveip, wftopfa, xsltproc_lite, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip |
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GITHUB
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quay.io/biocontainers/hca-matrix-downloader |
shpc-registry automated BioContainers addition for hca-matrix-downloader |
hca-matrix-downloader, hca-mtx-to-10x, chardetect, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/hca |
shpc-registry automated BioContainers addition for hca |
|
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GITHUB
|
quay.io/biocontainers/hclust2 |
shpc-registry automated BioContainers addition for hclust2 |
hclust2.py, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/hcluster_sg |
shpc-registry automated BioContainers addition for hcluster_sg |
hcluster_sg |
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GITHUB
|
quay.io/biocontainers/hdf5 |
shpc-registry automated BioContainers addition for hdf5 |
h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff |
|
GITHUB
|
quay.io/biocontainers/hecatomb |
shpc-registry automated BioContainers addition for hecatomb |
bsdcat, bsdcpio, bsdtar, conda2solv, dumpsolv, hecatomb, installcheck, mamba, mamba-package, mergesolv, repo2solv, testsolv, conda-env, cph, plac_runner.py, yte, docutils, pulptest, cbc, clp, snakemake, snakemake-bash-completion |
|
GITHUB
|
quay.io/biocontainers/heinz |
shpc-registry automated BioContainers addition for heinz |
dimacs-solver, dimacs-to-lgf, heinz, lemon-0.x-to-1.x.sh, lgf-gen, cbc, clp, glpsol |
|
GITHUB
|
quay.io/biocontainers/heliano |
singularity registry hpc automated addition for heliano |
dialign2-2, gawk-5.3.1, heliano, heliano_cons, rnabob, genometools-config, gt, bsmp2info, fsa2xml, gbf2info, just-top-hits, systematic-mutations, xmlget, xmltext, aaindexextract, abiview, acdgalaxy, acdlog, acdpretty, acdtable, acdtrace, acdvalid, aligncopy, aligncopypair, antigenic, assemblyget, backtranambig, backtranseq, banana, biosed |
|
GITHUB
|
quay.io/biocontainers/helitronscanner |
singularity registry hpc automated addition for helitronscanner |
HelitronScanner, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, jwebserver, jpackage, cups-config, ippeveprinter, ipptool, hb-info, tjbench, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb |
|
GITHUB
|
quay.io/biocontainers/helperlibs |
shpc-registry automated BioContainers addition for helperlibs |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/hera |
shpc-registry automated BioContainers addition for hera |
hera, hera_build, mirror_server, mirror_server_stop, h5clear, h5format_convert, h5watch, h5fc, 2to3-3.10, idle3.10, pydoc3.10, python3.1 |
|
GITHUB
|
quay.io/biocontainers/hesslab-gambit |
shpc-registry automated BioContainers addition for hesslab-gambit |
alembic, gambit, mako-render, f2py3.9, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy |
|
GITHUB
|
quay.io/biocontainers/hg-color |
shpc-registry automated BioContainers addition for hg-color |
HG-CoLoR, PgSAgen, PgSAtest, blasr, blasr-license, filterShortReads.py, formatLongReads.py, merge_mate_pairs, quorum, quorum_create_database, quorum_error_correct_reads, split.py, split_mate_pairs, trim.py, _aaindexextract, _abiview, _acdc, _acdpretty, _acdtable, _acdtrace, _acdvalid, _antigenic, _backtranambig, _backtranseq |
|
GITHUB
|
quay.io/biocontainers/hgtools |
shpc-registry automated BioContainers addition for hgtools |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/hgvs |
shpc-registry automated BioContainers addition for hgvs |
hgvs-shell, pyppeteer-install, seqrepo, sqlformat, yoyo, yoyo-migrate, iptest3, coloredlogs, iptest, humanfriendly, ipython3, tabulate, ipython, pg_config, pygmentize, normalizer |
|
GITHUB
|
quay.io/biocontainers/hhsuite |
shpc-registry automated BioContainers addition for hhsuite |
a3m_database_extract, a3m_database_filter, a3m_database_reduce, a3m_extract, a3m_reduce, cstranslate, ffindex_apply, ffindex_build, ffindex_from_fasta, ffindex_from_fasta_with_split, ffindex_get, ffindex_modify, ffindex_order, ffindex_reduce, ffindex_unpack, hhalign, hhalign_omp, hhblits, hhblits_ca3m, hhblits_omp, hhconsensus, hhfilter, hhmake, hhsearch, hhsearch_omp, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/hi-corrector |
singularity registry hpc automated addition for hi-corrector |
export_norm_data, ic, ic_mep, ic_mes, split_data, split_data_parallel, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun, shmemcc, shmemfort, shmemrun, aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info, opal_wrapper, orte-clean, orte-info, orte-server, ortecc, orted |
|
GITHUB
|
quay.io/biocontainers/hic-straw |
singularity registry hpc automated addition for hic-straw |
pybind11-config, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/hic2cool |
shpc-registry automated BioContainers addition for hic2cool |
hic2cool, cooler, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix |
|
GITHUB
|
quay.io/biocontainers/hicap |
shpc-registry automated BioContainers addition for hicap |
hicap, build.sh, common.go, rchive.go, setup-deps.log, setup.sh, xtract.go, prodigal, bt-context.txt, bt-link, bt-load |
|
GITHUB
|
quay.io/biocontainers/hicbrowser |
shpc-registry automated BioContainers addition for hicbrowser |
dask-mpi, dask-remote, dask-submit, findRestSite, hicAggregateContacts, hicBuildMatrix, hicCompareMatrices, hicCorrectMatrix, hicCorrelate, hicExport, hicFindEnrichedContacts, hicFindTADs, hicInfo, hicLog2Ratio, hicMergeMatrixBins, hicPCA, hicPlotDistVsCounts, hicPlotMatrix, hicPlotTADs, hicPlotViewpoint, hicQC, hicSumMatrices, hicTransform, hicexplorer, runBrowser, unit2, cooler, createfontdatachunk.py, unidecode, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh |
|
GITHUB
|
quay.io/biocontainers/hicexplorer |
shpc-registry automated BioContainers addition for hicexplorer |
dask-mpi, dask-remote, dask-submit, findRestSite, hicAdjustMatrix, hicAggregateContacts, hicAverageRegions, hicBuildMatrix, hicCompareMatrices, hicConvertFormat, hicCorrectMatrix, hicCorrelate, hicExport, hicFindEnrichedContacts, hicFindTADs, hicInfo, hicMergeMatrixBins, hicNormalize, hicPCA, hicPlotAverageRegions, hicPlotDistVsCounts, hicPlotMatrix, hicPlotTADs, hicPlotViewpoint, hicQC, hicSumMatrices, hicTransform, hicexplorer, make_tracks_file, pgt, pyGenomeTracks, cooler, unidecode, bam2pairs, column_remover.pl, conv-template, duplicate_header_remover.pl, fragment_4dnpairs.pl, from-template, juicer_shortform2pairs.pl, merge-pairs.sh |
|
GITHUB
|
quay.io/biocontainers/hichipper |
shpc-registry automated BioContainers addition for hichipper |
hichipper, macs2, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, gio-launch-desktop |
|
GITHUB
|
quay.io/biocontainers/hicmatrix |
shpc-registry automated BioContainers addition for hicmatrix |
dask-mpi, dask-remote, dask-submit, cooler, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix |
|
GITHUB
|
quay.io/biocontainers/hicstuff |
shpc-registry automated BioContainers addition for hicstuff |
hicstuff, pyfastx, x86_64-conda_cos7-linux-gnu-ld, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s |
|
GITHUB
|
quay.io/biocontainers/hictk |
singularity registry hpc automated addition for hictk |
hictk, h5delete, aec, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp, h5perf_serial, h5redeploy, h5repack |
|
GITHUB
|
quay.io/biocontainers/hictkpy |
singularity registry hpc automated addition for hictkpy |
h5delete, aec, f2py3.8, normalizer, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp, h5perf_serial, h5redeploy, h5repack, h5repart, h5stat, h5unjam, h5dump |
|
GITHUB
|
quay.io/biocontainers/hicup |
shpc-registry automated BioContainers addition for hicup |
find_common_fragment_interactions.pl, hicup, hicup2fithic, hicup2gothic, hicup2hicpipe, hicup2homer, hicup2juicer, hicup_capture, hicup_checker, hicup_deduplicator, hicup_digester, hicup_filter, hicup_mapper, hicup_module.pm, hicup_reporter, hicup_truncater, make_hic_array.pl, pandoc-server, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect |
|
GITHUB
|
quay.io/biocontainers/hiddendomains |
shpc-registry automated BioContainers addition for hiddendomains |
binReads.pl, centersToGEM.pl, domainsMergeToBed.pl, domainsToBed.pl, hiddenDomains, hiddenDomains.R, peakCenters, run_hiddenDomains.R, run_hiddenDomains_no_control.R, fasta-sanitize.pl, shiftBed, plot-ampliconstats, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam |
|
GITHUB
|
quay.io/biocontainers/hifiasm |
shpc-registry automated BioContainers addition for hifiasm |
hifiasm |
|
GITHUB
|
quay.io/biocontainers/hifiasm_meta |
shpc-registry automated BioContainers addition for hifiasm_meta |
hifiasm_meta |
|
GITHUB
|
quay.io/biocontainers/hificnv |
singularity registry hpc automated addition for hificnv |
hificnv |
|
GITHUB
|
quay.io/biocontainers/hifieval |
singularity registry hpc automated addition for hifieval |
hifieval.py, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/hifihla |
singularity registry hpc automated addition for hifihla |
hifihla |
|
GITHUB
|
quay.io/biocontainers/hifive |
shpc-registry automated BioContainers addition for hifive |
fetch_mrh_data, hifive, unit2, aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info, opal_wrapper, orte-clean, orte-info |
|
GITHUB
|
quay.io/biocontainers/hiline |
shpc-registry automated BioContainers addition for hiline |
HiLine, _HiLine_Aligner, bwa-mem2, bwa-mem2.avx, bwa-mem2.avx2, bwa-mem2.avx512bw, bwa-mem2.sse41, bwa-mem2.sse42, gawk-5.1.0, awk, gawk, sdust, paftools.js, minimap2, k8, qualfa2fq.pl, xa2multi.pl, bwa |
|
GITHUB
|
quay.io/biocontainers/hilinetojuicer |
singularity registry hpc automated addition for hilinetojuicer |
HiLineToJuicer, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd, df, dir, dircolors, dirname, du, echo, env |
|
GITHUB
|
quay.io/biocontainers/hilive2 |
shpc-registry automated BioContainers addition for hilive2 |
hilive, hilive-build, hilive-out |
|
GITHUB
|
quay.io/biocontainers/hint |
shpc-registry automated BioContainers addition for hint |
|
|
GITHUB
|
quay.io/biocontainers/hiphase |
singularity registry hpc automated addition for hiphase |
hiphase |
|
GITHUB
|
quay.io/biocontainers/hisat2-pipeline |
singularity registry hpc automated addition for hisat2-pipeline |
annot-tsv, extract_exons.py, extract_splice_sites.py, hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2-pipeline, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, prepDE.py, stringtie, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim |
|
GITHUB
|
quay.io/biocontainers/hisat2 |
shpc-registry automated BioContainers addition for hisat2 |
extract_exons.py, extract_splice_sites.py, hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/hitac |
shpc-registry automated BioContainers addition for hitac |
hiclass, doesitcache, ipython3, ipython, cygdb, cython, cythonize, py.test, pytest, natsort, mirror_server |
|
GITHUB
|
quay.io/biocontainers/hitea |
shpc-registry automated BioContainers addition for hitea |
hitea, pairtools, pbgzip, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
|
GITHUB
|
quay.io/biocontainers/hits |
shpc-registry automated BioContainers addition for hits |
jupyter-dejavu, jupyter-execute, send2trash, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run, iptest3, bokeh |
|
GITHUB
|
quay.io/biocontainers/hivtrace |
shpc-registry automated BioContainers addition for hivtrace |
TNS, bam2fna, bam2msa, bamclip, bealign, clipedge, consensus, hivnetworkannotate, hivnetworkcsv, hivtrace, hivtrace_strip_drams, hivtrace_viz, msa2bam, seqmerge, translate, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/hla-asm |
singularity registry hpc automated addition for hla-asm |
HLA-ASM.pl, findPath.pm, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc, bp_genbank2gff3, bp_index, bp_local_taxonomydb_query, bp_make_mrna_protein, bp_mask_by_search, bp_mrtrans, bp_mutate, bp_nexus2nh, bp_nrdb, bp_oligo_count, bp_process_gadfly, bp_process_sgd, bp_revtrans-motif, bp_search2alnblocks, bp_search2gff |
|
GITHUB
|
quay.io/biocontainers/hla-la |
shpc-registry automated BioContainers addition for hla-la |
HLA-ASM.pl, HLA-LA.pl, picard, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches |
|
GITHUB
|
quay.io/biocontainers/hlafreq |
singularity registry hpc automated addition for hlafreq |
c++, g++, pytensor-cache, h5delete, aec, tjbench, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff |
|
GITHUB
|
quay.io/biocontainers/hlama |
shpc-registry automated BioContainers addition for hlama |
OSSolverService, OptiTypePipeline.py, checkCopyright, checkcopyright, computeconf, dispatch_srvr, evaluate_xhat, get_pyomo_extras, hlama, kill_pyro_mip_servers, launch_pyro_mip_servers, lbin, lpython, ossolverservice, phsolverserver, pyomo, pyomo_ns, pyomo_nsc, pyomo_old, pyomo_python, pypi_downloads, pyro_mip_server, pyutilib_test_driver, razers3, readsol, replaceCopyright, replacecopyright, results_schema, runbenders, runef, runph, scenariotreeserver, test.pyomo, test.pyutilib, conv-template, from-template, nosetests, pt2to3, ptdump, ptrepack, pttree, snakemake, snakemake-bash-completion, glpsol |
|
GITHUB
|
quay.io/biocontainers/hlaprofiler |
shpc-registry automated BioContainers addition for hlaprofiler |
HLAProfiler.pl, install.pl, kraken, kraken-build, kraken-filter, kraken-mpa-report, kraken-report, kraken-translate, jellyfish, moose-outdated, package-stash-conflicts, cpanm, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/hmftools-amber |
shpc-registry automated BioContainers addition for hmftools-amber |
AMBER, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/hmftools-bam-tools |
singularity registry hpc automated addition for hmftools-bam-tools |
jwebserver, bamtools, pcre2posix_test, jpackage, cups-config, ippeveprinter, ipptool, hb-info, tjbench, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd |
|
GITHUB
|
quay.io/biocontainers/hmftools-chord |
singularity registry hpc automated addition for hmftools-chord |
chord, idle3.13, pydoc3.13, python3.13, python3.13-config, jwebserver, jpackage, cups-config, ippeveprinter, ipptool, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, tjbench, aserver, jdeps |
|
GITHUB
|
quay.io/biocontainers/hmftools-cobalt |
shpc-registry automated BioContainers addition for hmftools-cobalt |
COBALT, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/hmftools-cuppa |
singularity registry hpc automated addition for hmftools-cuppa |
cuppa, cuppa-chart, jwebserver, pcre2posix_test, jpackage, cups-config, ippeveprinter, ipptool, hb-info, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tjbench, fonttools, pyftmerge, pyftsubset, ttx, jfr, brotli, jdeprscan, jhsdb, jimage, jlink, jmod, jshell |
|
GITHUB
|
quay.io/biocontainers/hmftools-esvee |
singularity registry hpc automated addition for hmftools-esvee |
esvee, ldc-build-runtime, ldc-profdata, ldc-prune-cache, ldc2, ldmd2, sambamba, jwebserver, jpackage, cups-config, ippeveprinter, ipptool, hb-info, jfr, tjbench, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java |
|
GITHUB
|
quay.io/biocontainers/hmftools-gripss |
shpc-registry automated BioContainers addition for hmftools-gripss |
gripss, cups-config, ippeveprinter, ipptool, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/hmftools-isofox |
shpc-registry automated BioContainers addition for hmftools-isofox |
isofox, cups-config, ippeveprinter, ipptool, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/hmftools-lilac |
shpc-registry automated BioContainers addition for hmftools-lilac |
LILAC, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/hmftools-linx |
shpc-registry automated BioContainers addition for hmftools-linx |
croco-0.6-config, csslint-0.6, linx, x86_64-conda_cos6-linux-gnu-pkg-config, circos, circos.exe, compile.bat, compile.make, gddiag, list.modules, test.modules, g-ir-doc-tool, giffilter, gifsponge |
|
GITHUB
|
quay.io/biocontainers/hmftools-mark-dups |
singularity registry hpc automated addition for hmftools-mark-dups |
annot-tsv, markdups, ldc-build-runtime, ldc-profdata, ldc-prune-cache, ldc2, ldmd2, sambamba, jwebserver, pcre2posix_test, jpackage, cups-config, ippeveprinter, ipptool, hb-info, fasta-sanitize.pl, plot-ampliconstats, tjbench, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, ace2sam |
|
GITHUB
|
quay.io/biocontainers/hmftools-neo |
singularity registry hpc automated addition for hmftools-neo |
jwebserver, neo, hb-info, jpackage, tjbench, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo |
|
GITHUB
|
quay.io/biocontainers/hmftools-orange |
singularity registry hpc automated addition for hmftools-orange |
orange, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap, jps |
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GITHUB
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quay.io/biocontainers/hmftools-pave |
singularity registry hpc automated addition for hmftools-pave |
pave, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap, jps |
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GITHUB
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quay.io/biocontainers/hmftools-peach |
singularity registry hpc automated addition for hmftools-peach |
peach, jwebserver, jpackage, cups-config, ippeveprinter, ipptool, hb-info, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, tjbench, aserver, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb |
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GITHUB
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quay.io/biocontainers/hmftools-protect |
singularity registry hpc automated addition for hmftools-protect |
protect, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap, jps |
|
GITHUB
|
quay.io/biocontainers/hmftools-purple |
shpc-registry automated BioContainers addition for hmftools-purple |
PURPLE, circos, circos.exe, compile.bat, compile.make, gddiag, list.modules, test.modules, jpackage, cups-config, ippeveprinter |
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GITHUB
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quay.io/biocontainers/hmftools-redux |
singularity registry hpc automated addition for hmftools-redux |
redux, sambamba, jwebserver, jpackage, cups-config, ippeveprinter, ipptool, hb-info, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, tjbench, aserver, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole |
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GITHUB
|
quay.io/biocontainers/hmftools-rose |
singularity registry hpc automated addition for hmftools-rose |
rose, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap, jps |
|
GITHUB
|
quay.io/biocontainers/hmftools-sage |
shpc-registry automated BioContainers addition for hmftools-sage |
SAGE, cups-config, ippeveprinter, ipptool, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/hmftools-sigs |
singularity registry hpc automated addition for hmftools-sigs |
sigs, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap, jps |
|
GITHUB
|
quay.io/biocontainers/hmftools-sv-prep |
singularity registry hpc automated addition for hmftools-sv-prep |
SvPrep, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap, jps |
|
GITHUB
|
quay.io/biocontainers/hmftools-virus-interpreter |
singularity registry hpc automated addition for hmftools-virus-interpreter |
virusinterpreter, jwebserver, pcre2posix_test, jpackage, cups-config, ippeveprinter, ipptool, hb-info, tjbench, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole |
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GITHUB
|
quay.io/biocontainers/hmmcopy |
shpc-registry automated BioContainers addition for hmmcopy |
bigWigInfo, bigWigSummary, bigWigToBedGraph, bigWigToWig, fastaToRead, gcCounter, generateMap.pl, mapCounter, readCounter, readToMap.pl, renameChr.pl, segToGc, segToMap, wigToBigWig, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect |
|
GITHUB
|
quay.io/biocontainers/hmmer |
shpc-registry automated BioContainers addition for hmmer |
|
|
GITHUB
|
quay.io/biocontainers/hmmer2 |
shpc-registry automated BioContainers addition for hmmer2 |
hmmalign2, hmmbuild2, hmmcalibrate2, hmmconvert2, hmmemit2, hmmfetch2, hmmindex2, hmmpfam2, hmmsearch2 |
|
GITHUB
|
quay.io/biocontainers/hmmlearn |
shpc-registry automated BioContainers addition for hmmlearn |
conv-template, from-template, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/hmmratac |
shpc-registry automated BioContainers addition for hmmratac |
HMMRATAC, giffilter, gifsponge, gifecho, gifinto, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/hmnfusion |
singularity registry hpc automated addition for hmnfusion |
hmnfusion, stone, plac_runner.py, yte, xml2-config.bak, docutils, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, cmark, pulptest, cbc, clp, snakemake, snakemake-bash-completion, jp.py, tabulate, py.test, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub |
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GITHUB
|
quay.io/biocontainers/hmnillumina |
singularity registry hpc automated addition for hmnillumina |
HmnIllumina, interop_aggregate, interop_dumpbin, interop_dumptext, interop_imaging_table, interop_index-summary, interop_plot_by_cycle, interop_plot_by_lane, interop_plot_flowcell, interop_plot_qscore_heatmap, interop_plot_qscore_histogram, interop_plot_sample_qc, interop_summary, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, py.test, pytest, python3.1 |
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GITHUB
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quay.io/biocontainers/hmnqc |
singularity registry hpc automated addition for hmnqc |
cnv_annotate.py, cnv_expression_correlate.py, cnv_updater.py, cnvkit.py, genome_instability_index.py, guess_baits.py, hmnqc, reference2targets.py, skg_convert.py, vba_extract.py, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc |
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GITHUB
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quay.io/biocontainers/hmnrandomread |
singularity registry hpc automated addition for hmnrandomread |
HmnRandomRead, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, py.test, pytest, htsfile, bgzip, tabix, python3.1 |
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GITHUB
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quay.io/biocontainers/hmntrimmer |
singularity registry hpc automated addition for hmntrimmer |
HmnTrimmer, HmnTrimmerReport, django-admin, sqlformat, igzip, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
|
quay.io/biocontainers/hmtnote |
shpc-registry automated BioContainers addition for hmtnote |
hmtnote, dask-scheduler, dask-ssh, dask-worker, bokeh, mirror_server, mirror_server_stop, fonttools, pyftmerge, pyftsubset, ttx |
|
GITHUB
|
quay.io/biocontainers/hocort |
singularity registry hpc automated addition for hocort |
Xcalcmem.sh, bloomfilterparser.sh, bwa-mem2, bwa-mem2.avx, bwa-mem2.avx2, bwa-mem2.avx512bw, bwa-mem2.sse41, bwa-mem2.sse42, extract_exons.py, extract_splice_sites.py, hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, hocort, kraken2, kraken2-build, kraken2-inspect, kmutate.sh, rsync-ssl, runhmm.sh, kmerposition.sh, reformatpb.sh, rsync, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, sketchblacklist2.sh, splitribo.sh, xxh128sum, xxh32sum, xxh64sum, addssu.sh, adjusthomopolymers.sh, analyzeaccession.sh, analyzegenes.sh, applyvariants.sh, bbcms.sh, bloomfilter.sh, callgenes.sh, comparegff.sh |
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GITHUB
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quay.io/biocontainers/homer |
shpc-registry automated BioContainers addition for homer |
GenomeOntology.pl, HomerConfig.pm, HomerSVGLogo.pm, SIMA.pl, Statistics.pm, addData.pl, addDataHeader.pl, addGeneAnnotation.pl, addInternalData.pl, addOligos.pl, adjustPeakFile.pl, adjustRedunGroupFile.pl, analyzeChIP-Seq.pl, analyzeHiC, analyzeRNA.pl, analyzeRepeats.pl, annotateInteractions.pl, annotatePeaks.pl, annotateRelativePosition.pl, annotateTranscripts.pl, assignGeneWeights.pl, assignGenomeAnnotation, assignTSStoGene.pl, batchAnnotatePeaksHistogram.pl, batchFindMotifs.pl, batchFindMotifsGenome.pl, batchMakeHiCMatrix.pl, batchMakeMultiWigHub.pl, batchMakeTagDirectory.pl, batchParallel.pl, bed2DtoUCSCbed.pl, bed2pos.pl, bed2tag.pl, blat2gtf.pl, bridgeResult2Cytoscape.pl, changeNewLine.pl, checkPeakFile.pl, checkTagBias.pl, chopUpBackground.pl, chopUpPeakFile.pl, chopify.pl, cleanUpPeakFile.pl, cleanUpSequences.pl, cluster2bed.pl, cluster2bedgraph.pl, combineGO.pl, combineHubs.pl, compareMotifs.pl, condenseBedGraph.pl, cons2fasta.pl, conservationAverage.pl, conservationPerLocus.pl, convertCoordinates.pl, convertIDs.pl, convertOrganismID.pl, duplicateCol.pl, eland2tags.pl, fasta2tab.pl, fastq2fasta.pl, filterListBy.pl, filterTADsAndCPs.pl, filterTADsAndLoops.pl, findGO.pl, findGOtxt.pl, findHiCCompartments.pl, findHiCDomains.pl, findHiCInteractionsByChr.pl, findKnownMotifs.pl, findMotifs.pl, findMotifsGenome.pl, findPeaks, findRedundantBLAT.pl, findTADsAndLoops.pl, findTADsAndLoopsFromRelMatrix, findTopMotifs.pl, flipPC1toMatch.pl, freq2group.pl, genericConvertIDs.pl, genomeOntology, getChrLengths.pl, getConservedRegions.pl, getDiffExpression.pl, getDifferentialBedGraph.pl, getDifferentialPeaks, getDifferentialPeaksReplicates.pl, getDistalPeaks.pl, getFocalPeaks.pl, getGWASoverlap.pl, getGenesInCategory.pl, getGenomeTilingPeaks, getHiCcorrDiff.pl, getHomerQCstats.pl, getLikelyAdapters.pl, getMappableRegions, getMappingStats.pl, getPartOfPromoter.pl, getPeakTags, getPos.pl, getRandomReads.pl, getSiteConservation.pl, getTopPeaks.pl, gff2pos.pl, go2cytoscape.pl, groupSequences.pl, homer, homer2, homerTools, joinFiles.pl, loadGenome.pl, loadPromoters.pl, makeBigBedMotifTrack.pl, makeBigWig.pl, makeBinaryFile.pl, makeHiCWashUfile.pl, makeMetaGeneProfile.pl, makeMultiWigHub.pl, makeTagDirectory, makeUCSCfile, map-fastq.pl, merge2Dbed.pl, mergeData.pl, mergePeaks, motif2Jaspar.pl, motif2Logo.pl, parseGTF.pl, pos2bed.pl, prepForR.pl, preparseGenome.pl, profile2seq.pl, qseq2fastq.pl, randRemoveBackground.pl, randomizeGroupFile.pl, randomizeMotifs.pl, removeAccVersion.pl, removeBadSeq.pl, removeOutOfBoundsReads.pl, removePoorSeq.pl, removeRedundantPeaks.pl, renamePeaks.pl, resizePosFile.pl, revoppMotif.pl, rotateHiCmatrix.pl, runHiCpca.pl, sam2spliceJunc.pl, scanMotifGenomeWide.pl, scrambleFasta.pl, selectRepeatBg.pl, seq2profile.pl, subtractBedGraphs.pl, subtractBedGraphsDirectory.pl, tab2fasta.pl, tag2bed.pl, tag2pos.pl, tagDir2HiCsummary.pl, tagDir2bed.pl, tagDir2hicFile.pl, zipHomerResults.pl, perl5.26.2, podselect |
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GITHUB
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quay.io/biocontainers/homoeditdistance |
shpc-registry automated BioContainers addition for homoeditdistance |
hed, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/homopolish |
shpc-registry automated BioContainers addition for homopolish |
homopolish, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin |
|
GITHUB
|
quay.io/biocontainers/hopla |
shpc-registry automated BioContainers addition for hopla |
hapmapConverter, hopla, merlin, merlin-offline, merlin-regress, minx, minx-offline, pedmerge, pedstats, pedwipe, pandoc-server, pandoc |
|
GITHUB
|
quay.io/biocontainers/hops |
shpc-registry automated BioContainers addition for hops |
MaltExtract, hops, malt-build, malt-run, postprocessing.AMPS.r, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/hormon |
shpc-registry automated BioContainers addition for hormon |
HORmon, monomer_inference, stringdecomposer, clustalo, diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate |
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GITHUB
|
quay.io/biocontainers/hostile |
singularity registry hpc automated addition for hostile |
hostile, httpx, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, docutils, gawk-5.1.0, awk, gawk, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect |
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GITHUB
|
quay.io/biocontainers/hotspot3d |
shpc-registry automated BioContainers addition for hotspot3d |
hotspot3d, moose-outdated, package-stash-conflicts, lwp-download, lwp-dump, lwp-mirror, lwp-request, cpanm, json_xs, perl5.32.1, streamzip |
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GITHUB
|
quay.io/biocontainers/how_are_we_stranded_here |
shpc-registry automated BioContainers addition for how_are_we_stranded_here |
FPKM-UQ.py, FPKM_count.py, RNA_fragment_size.py, RPKM_saturation.py, bam2fq.py, bam2wig.py, bam_stat.py, check_strandedness, clipping_profile.py, deletion_profile.py, divide_bam.py, geneBody_coverage.py, geneBody_coverage2.py, gff32gtf, infer_experiment.py, inner_distance.py, insertion_profile.py, junction_annotation.py, junction_saturation.py, kallisto, mismatch_profile.py, normalize_bigwig.py, overlay_bigwig.py, read_GC.py, read_NVC.py, read_distribution.py, read_duplication.py, read_hexamer.py, read_quality.py, split_bam.py, split_paired_bam.py, tin.py, gtf2bed, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py |
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GITHUB
|
quay.io/biocontainers/howdesbt |
shpc-registry automated BioContainers addition for howdesbt |
howdesbt, jellyfish |
|
GITHUB
|
quay.io/biocontainers/hpcblast |
singularity registry hpc automated addition for hpcblast |
hpc-blast, qcs, qs, runbatch, runjob, runsge, runshell, blastn_vdb, tblastn_vdb, uuid, uuid-config, test_pcre, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl, sort-table |
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GITHUB
|
quay.io/biocontainers/hpsuissero |
shpc-registry automated BioContainers addition for hpsuissero |
HpsuisSero.sh, check_compression, compress_fast5, demux_fast5, fast5_subset, flye, flye-minimap2, flye-modules, flye-samtools, medaka, medaka_consensus, medaka_counts, medaka_data_path, medaka_variant, medaka_version_report, mini_align, multi_to_single_fast5, single_to_multi_fast5, whatshap, minimap2.py, freeze_graph, metadata_conda_debug.yaml, tar, igzip, tf_upgrade_v2, pbunzip2, pbzcat, pbzip2, tflite_convert |
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GITHUB
|
quay.io/biocontainers/hr2 |
shpc-registry automated BioContainers addition for hr2 |
HR2.exe |
|
GITHUB
|
quay.io/biocontainers/hs-blastn |
shpc-registry automated BioContainers addition for hs-blastn |
hs-blastn, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides |
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GITHUB
|
quay.io/biocontainers/hsdecipher |
singularity registry hpc automated addition for hsdecipher |
HSD_add_on.py, HSD_batch_run.py, HSD_categories.py, hsd_heatmap, ko.tsv, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fonttools, pyftmerge, pyftsubset, ttx, tjbench, brotli, opj_compress, opj_decompress, opj_dump |
|
GITHUB
|
quay.io/biocontainers/hsdfinder |
singularity registry hpc automated addition for hsdfinder |
KO_database.keg, hsd_to_kegg, hsdfinder, operation.py, pfam.py, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/hts-nim-tools |
shpc-registry automated BioContainers addition for hts-nim-tools |
hts_nim_tools, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/htseq-clip |
singularity registry hpc automated addition for htseq-clip |
htseq-clip, htseq-count-barcodes, htseq-count, htseq-qa, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
|
quay.io/biocontainers/htseq |
shpc-registry automated BioContainers addition for htseq |
htseq-count, htseq-qa, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, jpgicc |
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GITHUB
|
quay.io/biocontainers/htseqqc |
shpc-registry automated BioContainers addition for htseqqc |
Filter_Pair.py, Filter_Single.py, StatisticPair.py, StatisticSingle.py, common_functions.py, filter.py, f2py3.6, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, 2to3-3.6, idle3.6 |
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GITHUB
|
quay.io/biocontainers/htsinfer |
singularity registry hpc automated addition for htsinfer |
STAR-avx, STAR-avx2, STAR-plain, STAR-sse3, STAR-sse4.1, STAR-ssse3, STARlong-avx, STARlong-avx2, STARlong-plain, STARlong-sse3, STARlong-sse4.1, STARlong-ssse3, annot-tsv, htsinfer, kallisto, STAR, STARlong, cutadapt, pbunzip2, pbzcat, pbzip2, igzip, pigz, unpigz, mirror_server, mirror_server_stop, f2py3.10, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls |
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GITHUB
|
quay.io/biocontainers/htslib |
shpc-registry automated BioContainers addition for htslib |
htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/htsqualc |
shpc-registry automated BioContainers addition for htsqualc |
Filter_Pair.py, Filter_Single.py, StatisticPair.py, StatisticSingle.py, common_functions.py, filter.py, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc |
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GITHUB
|
quay.io/biocontainers/htstream |
shpc-registry automated BioContainers addition for htstream |
hts_AdapterTrimmer, hts_CutTrim, hts_LengthFilter, hts_NTrimmer, hts_Overlapper, hts_PolyATTrim, hts_Primers, hts_QWindowTrim, hts_SeqScreener, hts_Stats, hts_SuperDeduper, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/httplib2 |
shpc-registry automated BioContainers addition for httplib2 |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
|
quay.io/biocontainers/httpretty |
shpc-registry automated BioContainers addition for httpretty |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
|
quay.io/biocontainers/hubward-all |
shpc-registry automated BioContainers addition for hubward-all |
CrossMap.py, annotate.pyc, bigBedToBed, bigWigToBedGraph, bigWigToWig, fab, fetchChromSizes, hubward, intersection_matrix.pyc, intron_exon_reads.pyc, inv, invoke, liftOver, pbt_plotting_example.pyc, peak_pie.pyc, venn_gchart.pyc, venn_mpl.pyc, wigToBigWig, bedGraphToBigWig, bedToBigBed, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py |
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GITHUB
|
quay.io/biocontainers/hubward |
shpc-registry automated BioContainers addition for hubward |
|
|
GITHUB
|
quay.io/biocontainers/hulk |
shpc-registry automated BioContainers addition for hulk |
hulk |
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GITHUB
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quay.io/biocontainers/humann |
shpc-registry automated BioContainers addition for humann |
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GITHUB
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quay.io/biocontainers/humann2 |
shpc-registry automated BioContainers addition for humann2 |
add_metadata_tree.py, build_tree_single_strain.py, compute_distance.py, compute_distance_all.py, dump_file.py, extract_markers.py, fastx_len_filter.py, fix_AF1.py, humann2, humann2_associate, humann2_barplot, humann2_benchmark, humann2_build_custom_database, humann2_config, humann2_databases, humann2_genefamilies_genus_level, humann2_humann1_kegg, humann2_infer_taxonomy, humann2_join_tables, humann2_reduce_table, humann2_regroup_table, humann2_rename_table, humann2_renorm_table, humann2_rna_dna_norm, humann2_split_stratified_table, humann2_split_table, humann2_strain_profiler, humann2_test, humann2_unpack_pathways, merge_metaphlan_tables.py, metaphlan2.py, metaphlan2krona.py, metaphlan_hclust_heatmap.py, mixed_utils.py, ooSubprocess.py, plot_bug.py, plot_tree_ete2.py, plot_tree_graphlan.py, pyqi, read_fastx.py, sam_filter.py, sample2markers.py, strainphlan.py, which.py, build.sh, common.go, rchive.go, setup-deps.log, setup.sh, xtract.go, biom, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS |
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GITHUB
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quay.io/biocontainers/humid |
singularity registry hpc automated addition for humid |
humid, igzip |
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GITHUB
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quay.io/biocontainers/hurry.filesize |
shpc-registry automated BioContainers addition for hurry.filesize |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/hybkit |
singularity registry hpc automated addition for hybkit |
hyb_analyze, hyb_check, hyb_eval, hyb_filter, tjbench, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/hybpiper |
singularity registry hpc automated addition for hybpiper |
Xcalcmem.sh, bloomfilterparser.sh, coronaspades.py, esd2esi, exonerate, exonerate-server, fasta2esd, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds, hybpiper, ipcress, metaplasmidspades.py, metaviralspades.py, rnaviralspades.py, kmutate.sh, runhmm.sh, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, sketchblacklist2.sh, splitribo.sh, addssu.sh, adjusthomopolymers.sh, analyzeaccession.sh, analyzegenes.sh, applyvariants.sh, bbcms.sh, bloomfilter.sh, callgenes.sh, comparegff.sh, consensus.sh, cutgff.sh, fetchproks.sh, filterqc.sh, fixgaps.sh |
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GITHUB
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quay.io/biocontainers/hybracter |
singularity registry hpc automated addition for hybracter |
hybracter, yte, plac_runner.py, docutils, pulptest, cbc, clp, humanfriendly, snakemake, snakemake-bash-completion, tabulate, jupyter-trust, jupyter, jupyter-migrate, jupyter-troubleshoot, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py, rst2xetex.py, rst2xml.py |
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GITHUB
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quay.io/biocontainers/hybran |
singularity registry hpc automated addition for hybran |
TMalign, aria2c, create_dbs.py, download_eggnog_data.py, emapper.py, f2py3.11, hmm_mapper.py, hmm_server.py, hmm_worker.py, hybran, make_pscores.pl, poa, ratt, tbl2asn-test, 2to3-3.11, clustalo, fix-sqn-date, idle3.11, pydoc3.11, python3.11, python3.11-config, faketime, real-tbl2asn, xmlget, xmltext, prokka-abricate_to_fasta_db, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb, impala, makemat, megablast, aaindexextract, abiview |
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GITHUB
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quay.io/biocontainers/hydra-multi |
shpc-registry automated BioContainers addition for hydra-multi |
assemble-routed-files.sh, bedpeToBam.py, bedpeToBed12.py, combine-assembled-files.sh, dedupDiscordantsMultiPass.py, extract_all_discordants.sh, extract_discordants.py, finalizeBreakpoints.py, forceOneClusterPerPairMem.py, frequency.py, hydra-assembler, hydra-ext, hydra-multi.sh, hydra-router, hydraToBreakpoint.py, make_hydra_config.py, mergeBreakpoints.py, pairDiscordants.py, bcftools, vcfutils.pl, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam |
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GITHUB
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quay.io/biocontainers/hypercluster |
shpc-registry automated BioContainers addition for hypercluster |
community, croco-0.6-config, csslint-0.6, x86_64-conda_cos6-linux-gnu-pkg-config, mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, g-ir-doc-tool, giffilter, gifsponge |
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GITHUB
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quay.io/biocontainers/hyphy |
shpc-registry automated BioContainers addition for hyphy |
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GITHUB
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quay.io/biocontainers/hypo |
shpc-registry automated BioContainers addition for hypo |
hypo, kmc, kmc_dump, kmc_tools, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/hypro |
shpc-registry automated BioContainers addition for hypro |
hypro.py, mmseqs2.sh, fix-sqn-date, faketime, real-tbl2asn, prokka-abricate_to_fasta_db, prokka, prokka-biocyc_to_fasta_db, prokka-build_kingdom_dbs, prokka-cdd_to_hmm, prokka-clusters_to_hmm, prokka-genbank_to_fasta_db |
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GITHUB
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quay.io/biocontainers/ibdmix |
singularity registry hpc automated addition for ibdmix |
generate_gt, gt_lods, ibdmix |
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GITHUB
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quay.io/biocontainers/ibdne |
shpc-registry automated BioContainers addition for ibdne |
ibdne, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/ice-cream |
singularity registry hpc automated addition for ice-cream |
ICEcream.sh, Vmatchtrans.pl, chain2dim, cleanpp.sh, jwebserver, matchcluster, mkdna6idx, mkvtree, plotting_script.py, repfind.pl, upgradeprj.pl, vendian, vmatch, vmatchselect, vmigrate.sh, vseqinfo, vseqselect, vstree2tex, vsubseqselect, blastn_vdb, tbl2asn-test, tblastn_vdb, TMalign, make_pscores.pl, poa, fix-sqn-date, faketime, real-tbl2asn, prokka-abricate_to_fasta_db, clustalo, prokka, prokka-biocyc_to_fasta_db, prokka-build_kingdom_dbs, prokka-cdd_to_hmm, prokka-clusters_to_hmm, prokka-genbank_to_fasta_db, prokka-genpept_to_fasta_db, prokka-hamap_to_hmm, prokka-tigrfams_to_hmm, prokka-uniprot_to_fasta_db, bl2seq, blastall, blastclust, blastpgp |
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GITHUB
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quay.io/biocontainers/iced |
shpc-registry automated BioContainers addition for iced |
ice, f2py3.7, opj_compress, opj_decompress, opj_dump, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
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GITHUB
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quay.io/biocontainers/icescreen |
shpc-registry automated BioContainers addition for icescreen |
AUTHORS.txt, INSTALL, LICENCE.txt, LOG_public_releases, agpl-3.0.txt, icescreen, plac_runner.py, yte, docutils, metadata_conda_debug.yaml, pulptest, cbc, clp, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py |
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GITHUB
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quay.io/biocontainers/icfree-ml |
singularity registry hpc automated addition for icfree-ml |
numpy-config, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, seedtop, test_pcre, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, xslt-config, xsltproc, run_with_lock, blast_formatter, blastdb_aliastool, blastdbcheck, blastdbcmd, blastn, blastp |
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GITHUB
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quay.io/biocontainers/iclipro |
shpc-registry automated BioContainers addition for iclipro |
iCLIPro, iCLIPro_bam_splitter, qhelpconverter, f2py2, f2py2.7, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner, repc |
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GITHUB
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quay.io/biocontainers/icount-mini |
shpc-registry automated BioContainers addition for icount-mini |
iCount-Mini, cutadapt, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, igzip, pybabel, pigz, unpigz, rst2html4.py |
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GITHUB
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quay.io/biocontainers/icount |
shpc-registry automated BioContainers addition for icount |
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GITHUB
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quay.io/biocontainers/idba |
shpc-registry automated BioContainers addition for idba |
Makefile, Makefile.am, Makefile.in, aclocal.bak, autoheader.bak, autom4te.bak, automake.bak, autoreconf.bak, autoscan.bak, autoupdate.bak, bazel-scan.py, fa2fq, fa2fq.o, filter_blat, filter_blat.o, filter_contigs, filter_contigs.o, filterfa, filterfa.o, fq2fa, fq2fa.o, idba, idba.o, idba_hybrid, idba_hybrid.o, idba_tran, idba_tran.o, idba_tran_test, idba_tran_test.o, idba_ud, idba_ud.o, ifnames.bak, parallel_blat, parallel_blat.o, parallel_rna_blat, parallel_rna_blat.o, print_graph, print_graph.o, raw_n50, raw_n50.o, run-unittest.py, sample_reads, sample_reads.o, scaffold, scaffold.o, scan.py, shuffle_reads, shuffle_reads.o, sim_reads, sim_reads.o, sim_reads_tran, sim_reads_tran.o, sort_psl, sort_psl.o, sort_reads, sort_reads.o, split_fa, split_fa.o, split_fq, split_fq.o, split_scaffold, split_scaffold.o, test.o, validate_blat, validate_blat_parallel, validate_blat_parallel_local, validate_blat_parallel_rna, validate_component, validate_component.o, validate_contigs_blat, validate_contigs_blat.o, validate_contigs_mummer, validate_contigs_mummer.o, validate_mummer, validate_reads_blat, validate_reads_blat.o, validate_rna, validate_rna.o, test |
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GITHUB
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quay.io/biocontainers/idba_subasm |
shpc-registry automated BioContainers addition for idba_subasm |
Makefile, Makefile.am, Makefile.in, bazel-scan.py, fa2fq, fa2fq.o, filter_blat, filter_blat.o, filter_contigs, filter_contigs.o, filterfa, filterfa.o, fq2fa, fq2fa.o, idba, idba.o, idba_hybrid, idba_hybrid.o, idba_subasm, idba_subasm.o, idba_tran, idba_tran.o, idba_tran_test, idba_tran_test.o, idba_ud, idba_ud.o, parallel_blat, parallel_blat.o, parallel_rna_blat, parallel_rna_blat.o, print_graph, print_graph.o, raw_n50, raw_n50.o, run-unittest.py, sample_reads, sample_reads.o, scaffold, scaffold.o, scan.py, shuffle_reads, shuffle_reads.o, sim_reads, sim_reads.o, sim_reads_tran, sim_reads_tran.o, sort_psl, sort_psl.o, sort_reads, sort_reads.o, split_fa, split_fa.o, split_fq, split_fq.o, split_scaffold, split_scaffold.o, test.o, validate_blat, validate_blat_parallel, validate_blat_parallel_local, validate_blat_parallel_rna, validate_component, validate_component.o, validate_contigs_blat, validate_contigs_blat.o, validate_contigs_mummer, validate_contigs_mummer.o, validate_mummer, validate_reads_blat, validate_reads_blat.o, validate_rna, validate_rna.o, test, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/ideas |
shpc-registry automated BioContainers addition for ideas |
ideas, prepMat |
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GITHUB
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quay.io/biocontainers/idemux |
shpc-registry automated BioContainers addition for idemux |
idemux, tqdm, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/idemuxcpp |
shpc-registry automated BioContainers addition for idemuxcpp |
idemuxCPP, bamtools |
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GITHUB
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quay.io/biocontainers/idr-py |
shpc-registry automated BioContainers addition for idr-py |
omero, omero.bat, setpythonpath.bat, slice2py, winconfig.bat, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run, iptest3, curve_keygen |
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GITHUB
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quay.io/biocontainers/idr |
shpc-registry automated BioContainers addition for idr |
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GITHUB
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quay.io/biocontainers/ifcnv |
singularity registry hpc automated addition for ifcnv |
ifCNV, ifCNV_main, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap, groupBy, intersectBed, linksBed, mapBed, maskFastaFromBed, mergeBed, multiBamCov |
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GITHUB
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quay.io/biocontainers/ifeature |
shpc-registry automated BioContainers addition for ifeature |
tqdm, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/ig-checkfcs |
shpc-registry automated BioContainers addition for ig-checkfcs |
checkFCS.R, uconv, tclsh8.5, wish8.5, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/ig-checkflowtypes |
shpc-registry automated BioContainers addition for ig-checkflowtypes |
checkFCS.R, checkFlowSOM.R, checkFlowSet.R, checkFlowframe.R, gio-launch-desktop, c89, c99 |
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GITHUB
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quay.io/biocontainers/ig-flowtools |
shpc-registry automated BioContainers addition for ig-flowtools |
FCS1Dplotggcyto.R, FCSConvert.R, FCSGateTrans.R, FCSKeyword.R, FCSMergeDownsample.R, FCSflowAI.R, FCSflowViz.R, FCSstats.R, FCSstats_txt.py, FCStxtMergeDownsample.py, FlowSOMCompare.R, FlowSOMGenerateTree.R, FlowSOMMApIndividualFCS.R, auto_collapse_pops.py, clustergrammerIPG.py, collapse_pops.py, color_palette.py, crossSampleOverview.py, editColumnHeadings.py, editFCSmarkers.R, extractpop.py, flowclrstats.py, flowstatlib.py, genFlowOverview.py, generateMFI.py, getDensityPlots.R, getDensityPlots_text.R, getFCSheader.R, getFCSheaders.py, getHeaders.py, getOntology.R, getOntology.py, profileCLs.py, runCrossSample.py, runFlockMFI.py, txtdiagnosis.py, flock, geos-config, pandoc, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/igblast-parser |
shpc-registry automated BioContainers addition for igblast-parser |
igblast-parser, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
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quay.io/biocontainers/igblast |
shpc-registry automated BioContainers addition for igblast |
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GITHUB
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quay.io/biocontainers/igda-script |
shpc-registry automated BioContainers addition for igda-script |
add_gq_to_vcf, align_genome, align_genome_dir, ann_fill_gap, ann_fill_gap_bak, ann_to_diploid, annotate_bam, ascp_download.sh, backup, backup_check, backup_retrieve, bamfilename_to_moviename, bamtofasta, bamtofasta_dir, bamtofasta_dir_legacy, bamtofastq, bamtofastq_dir, canu_nanopore_dir, canu_pacbio_dir, ccs_dir, check_all_snv, check_all_snv_dir, checklog, circlator_dir, cmpgenome, cmpgenome_combine_snp, cmpgenome_dir, cmpgenome_promer, cmpgenome_select_region, cmpgenome_select_region_backup, cmpgenome_split_by_query, cmpgenome_trim, cmpgenome_trim_dir, contexteffect_dir, convert_detectsingle_to_gff, deci2bin, download_assembly, download_hdf5, download_hdf5_bak, download_hdf5_legacy, download_hdf5_metadata, download_nanopore, download_sra, download_sra_legacy, duplicate_file, encode2var, encode_dir, encode_exclude_loci, encode_to_dot, est_depth, est_depth_dir, eval_ann, exclude_loci, exclude_loci_backup, exclude_loci_by_code, faidx_dir, fasta2upper, fasta_concatenate, fasta_exclude_motif, fasta_motif_finding, fasta_sample, fasta_subseq, fasta_subseq_batch, fastaclean, fastasplit, fastq2fasta, fastq2fasta_dir, fastq_dump_dir, fastq_sample, file_diff, file_intersect, file_intersect_stat, file_sel, filter_dot_file, filter_nanopore, filter_nanopore_dir, filter_pacbio, filter_pacbio_bak, filter_pacbio_dir, filter_pacbio_to_fasta, filter_pacbio_to_fasta_dir, filter_snp, filter_snp_dir, flye_pacbio_dir, gen_artificial_var, gen_artificial_var_dir, get_16rRNA_region, get_consensus_recode, get_ont_flowcell, get_pacbio_metadata_dir, getbambyregion, getbambyregion_dir, getchr, getchr_batch, getchrlen, getchrlen_mean, getchrname, getchrregion, getcontexteffect_dir, getdepth, getdepth_dir, getdepth_from_paf, getdepth_mean, getdepth_mean_dir, getdepth_min, getdepth_min_dir, getgenomealigndepth, getgenomealigndepth_dir, getpbchemistry, getpbchemistry_dir, getreadsbyname, getreadsbyname_bak, getreadsbyref, getreadsbyref_bam, getreadsbyref_dir, getsnvfreq_by_interval, getuniqgenomealign, getuniqgenomealign_interval, getuniqgenomealign_sample_names, getuniqrows, getuniqsnv, getuniqsnv_dir, getvar_from_m5, grepf, guppy_basecaller, hdf5tobam, hdf5tobam_dir, igda_align, igda_align_dir, igda_align_illumina, igda_align_ont, igda_align_ont_dir, igda_align_pb, igda_align_pb_dir, igda_align_pb_fa, igda_ann2sam, igda_assemble_iter, igda_auc, igda_boosting_cv, igda_boosting_pred, igda_boosting_to_context, igda_boosting_train, igda_consensus, igda_context_pred, igda_context_to_boosting, igda_context_train, igda_context_train_cv, igda_encode, igda_mcontexteffect, igda_mcontexteffect_dir, igda_median, igda_mpileup, igda_mpileup_dir, igda_ont_mod, igda_phase2vcf, igda_phase2vcf.bak, igda_pileup_snv, igda_pileup_snv_legacy, igda_pipe_detect, igda_pipe_detect_ont, igda_pipe_detect_pb, igda_pipe_phase, igda_pipe_phase_diploid, igda_pipe_phase_ont, igda_pipe_phase_pb, igda_pipe_phase_pb_diploid, igda_roc, igda_rsm, igda_shud, igda_truevar2sam, igda_var2vcf, lndir, m5tofa, m5tovar, m5tovar_dir, map_filename_to_movie, map_locus, map_locus_from_m5, match_ann_and_trueencode, merge_bam, merge_encode, merge_runs, mergefasta, miniasm_recursive, minimap2_genome, minimap2_genome_dir, minimap2_illumina_pair, minimap2_illumina_single, minimap2_nanopore, minimap2_nanopore_dir, minimap2_pacbio, minimap2_pacbio_ccs, minimap2_pacbio_dir, minimap2_pacbio_meta, minimap2_pacbio_meta_dir, mixreads, mixreads_bamtools, motif_findloci, mutate_ref, ngmlr_dir, pb_bamtofastq_dir, pbalign_dir, pbgfftolist, pbindex_dir, pbmm2_align, pbmm2_align_dir, pbmotifmaker, pbvariantcaller, pbvariantcaller_dir, pileup_count_dir, pileup_count_to_context_dir, pileup_qv, pileup_qv_dir, pileup_samtools, pileup_samtools_dir, plot_roc, qc_fastq_stat, qc_fastq_stat_dir, qc_nanopore, qc_nanopore_dir, quantile, r_sample_int, rand_sel_reads_from_bam, recode_dir, recode_dir_legacy, rename_canu_contig, rename_canu_contig_dir, sam2bam, sam2bam_dir, sam2bam_legacy, sam2fa, sam2fq, sam_addtag, sam_maskqv, sam_maskqv_core, sam_maskqv_dir, samtom5_dir, samtools_mpileup_to_var, sclust_summary.sh, select_samples, show_hpcopt, sniffles_dir, snptoencode, snptoencode_dir, split_bam_by_movie, split_bam_by_ref, split_bam_by_ref_dir, split_m5_by_movie, split_m5_by_ref, split_m5_by_ref_dir, split_paf_by_ref, split_range, submitjob, submitjob_himem, summarydepth_dir, trim_bam_by_region, trim_bam_by_region_dir, trim_encode, trim_encode_dir, unziphdf5, unziphdf5_dir, unzipont, unzipont_dir, wgetdir, racon_wrapper, metadata_conda_debug.yaml, build_env_setup.sh, conda_build.sh |
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GITHUB
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quay.io/biocontainers/igdiscover |
shpc-registry automated BioContainers addition for igdiscover |
aclocal.bak, autoheader.bak, autom4te.bak, automake.bak, autoreconf.bak, autoscan.bak, autoupdate.bak, edit_imgt_file.pl, ifnames.bak, igblastn, igblastp, igdiscover, pear, pearRM, sqt, pyrsa-decrypt-bigfile, pyrsa-encrypt-bigfile, flash, cutadapt, vsearch, muscle, perl5.22.0, snakemake, snakemake-bash-completion, jp.py |
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GITHUB
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quay.io/biocontainers/igfinder |
singularity registry hpc automated addition for igfinder |
igfinder, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/igor_vdj |
shpc-registry automated BioContainers addition for igor_vdj |
igor, igor-compute_pgen |
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GITHUB
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quay.io/biocontainers/igphyml |
shpc-registry automated BioContainers addition for igphyml |
AlignRecords.py, AlignSets.py, AssemblePairs.py, AssignGenes.py, BuildConsensus.py, BuildTrees.py, ClusterSets.py, CollapseSeq.py, ConvertDb.py, ConvertHeaders.py, CreateGermlines.py, DefineClones.py, EstimateError.py, FilterSeq.py, MakeDb.py, MaskPrimers.py, PairSeq.py, ParseDb.py, ParseHeaders.py, ParseLog.py, SplitSeq.py, UnifyHeaders.py, airr-tools, igphyml, vsearch, muscle, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns |
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GITHUB
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quay.io/biocontainers/igv-reports |
shpc-registry automated BioContainers addition for igv-reports |
create_datauri, create_report, normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/igv |
shpc-registry automated BioContainers addition for igv |
|
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GITHUB
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quay.io/biocontainers/igvtools |
shpc-registry automated BioContainers addition for igvtools |
igvtools, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/illumina-cleanup |
shpc-registry automated BioContainers addition for illumina-cleanup |
Xcalcmem.sh, fastq-scan, illumina-cleanup, jq, lighter, nextflow, nextflow.bak, onig-config, kmutate.sh, runhmm.sh, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, sketchblacklist2.sh |
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GITHUB
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quay.io/biocontainers/illumina-interop |
shpc-registry automated BioContainers addition for illumina-interop |
interop_aggregate, interop_dumpbin, interop_dumptext, interop_imaging_table, interop_index-summary, interop_plot_by_cycle, interop_plot_by_lane, interop_plot_flowcell, interop_plot_qscore_heatmap, interop_plot_qscore_histogram, interop_plot_sample_qc, interop_summary |
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GITHUB
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quay.io/biocontainers/illumina-utils |
shpc-registry automated BioContainers addition for illumina-utils |
iu-compute-qual-dicts-from-fastq, iu-deinterleave-fastq, iu-demultiplex, iu-fasta-to-fastq, iu-fastq-to-fasta, iu-filter-merged-reads, iu-filter-quality-bokulich, iu-filter-quality-minoche, iu-gen-configs, iu-gen-matching-fastq-files, iu-interleave-fastq, iu-merge-pairs, iu-remove-ids-from-fastq, iu-subsample-fastq, iu-trim-V6-primers, iu-trim-fastq, iu-visualize-mismatch-distribution, iu-visualize-plot-dicts, iu-visualize-qual-dicts, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc |
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GITHUB
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quay.io/biocontainers/illuminate |
shpc-registry automated BioContainers addition for illuminate |
illuminate, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/illumiprocessor |
shpc-registry automated BioContainers addition for illumiprocessor |
illumiprocessor, trimmomatic, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell |
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GITHUB
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quay.io/biocontainers/im-pipelines |
shpc-registry automated BioContainers addition for im-pipelines |
cluster_3d, cluster_butina, cluster_butina_matrix, conformers, constrained_conf_gen, featurestein_generate, featurestein_score, max_min_picker, molvs, o3dAlign, obabel_prepare_pdb, pbf_ev, pk_tmax_cmax_sim, plip, prepare_tether, rxn_maker, rxn_selector, rxn_smarts_filter, sanifier, screen, screen_multi, smog2016, split_fragnet_candidates, standardise-mols, standardiser, standardize, sucos, sucos_max, xcos, sample, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc |
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GITHUB
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quay.io/biocontainers/im2deep |
singularity registry hpc automated addition for im2deep |
deeplc, deeplc-gui, im2deep, progressbar, psm-utils, psm_utils, flatc, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, h5tools_test_utils, import_pb_to_tensorboard, markdown-it, estimator_ckpt_converter, h5fuse.sh, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, h5delete, tensorboard, markdown_py, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin |
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GITHUB
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quay.io/biocontainers/ima3 |
singularity registry hpc automated addition for ima3 |
IMa3, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun, shmemcc, shmemfort, shmemrun, aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info, opal_wrapper, orte-clean, orte-info, orte-server, ortecc, orted |
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GITHUB
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quay.io/biocontainers/imctools |
shpc-registry automated BioContainers addition for imctools |
JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng |
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GITHUB
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quay.io/biocontainers/imfusion |
shpc-registry automated BioContainers addition for imfusion |
bam2fastx, bam_merge, bed_to_juncs, contig_to_chr_coords, exactSNP, featureCounts, fix_map_ordering, gtf_juncs, gtf_to_fasta, imfusion, imfusion-build, imfusion-ctg, imfusion-expression, imfusion-insertions, imfusion-merge, juncs_db, long_spanning_reads, map2gtf, prepDE.py, prep_reads, sam_juncs, samtools_0.1.18, segment_juncs, sra_to_solid, stringtie, subindel, subjunc, subread-align, subread-buildindex, tophat, tophat-fusion-post, tophat2, tophat_reports, STAR, STARlong, htseq-count, htseq-qa, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s |
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GITHUB
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quay.io/biocontainers/immuneml |
shpc-registry automated BioContainers addition for immuneml |
airr-tools, immune-ml, immune-ml-quickstart, pystache, pystache-test, torchrun, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, google-oauthlib-tool, get_objgraph, undill, tensorboard, xkbcli, cygdb, cython |
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GITHUB
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quay.io/biocontainers/imods |
singularity registry hpc automated addition for imods |
imc, imode_gcc, imodview, imove |
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GITHUB
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quay.io/biocontainers/impg |
singularity registry hpc automated addition for impg |
impg |
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GITHUB
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quay.io/biocontainers/impute2 |
shpc-registry automated BioContainers addition for impute2 |
impute2 |
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GITHUB
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quay.io/biocontainers/imseq |
shpc-registry automated BioContainers addition for imseq |
imseq |
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GITHUB
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quay.io/biocontainers/imsindel |
shpc-registry automated BioContainers addition for imsindel |
ann_exons_ens.pl, ann_exons_ncbi.pl, ann_exons_up_sql.pl, ann_exons_up_www.pl, ann_feats2ipr.pl, ann_feats2ipr_e.pl, ann_feats_up_sql.pl, ann_feats_up_www2.pl, ann_ipr_www.pl, ann_pdb_cath.pl, ann_pdb_vast.pl, ann_pfam27.pl, ann_pfam28.pl, ann_pfam30.pl, ann_pfam30_tmptbl.pl, ann_pfam_www.pl, ann_upfeats_pfam_www_e.pl, annot_blast_btop2.pl, bundle, bundler, color_defs.pl, exp_up_ensg.pl, expand_links.pl, expand_uniref50.pl, fasta36, fastf36, fastm36, fasts36, fastx36, fasty36, ggsearch36, glsearch36, imsindel, lalign36, lav2plt.pl, lavplt_ps.pl, lavplt_svg.pl, links2sql.pl, m8_btop_msa.pl, m9B_btop_msa.pl, map_db, merge_blast_btab.pl, parse_m9.pl, res2R.pl, shuffle_embed.pl, ssearch36, summ_domain_ident.pl, tfastf36, tfastm36, tfasts36, tfastx36, tfasty36, gdbm_dump, gdbm_load, gdbmtool, erb, gem, irb, rake, rdoc, ri, ruby |
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GITHUB
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quay.io/biocontainers/indelfixer |
shpc-registry automated BioContainers addition for indelfixer |
InDelFixer, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/infernal |
shpc-registry automated BioContainers addition for infernal |
cmalign, cmbuild, cmcalibrate, cmconvert, cmemit, cmfetch, cmpress, cmscan, cmsearch, cmstat |
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GITHUB
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quay.io/biocontainers/infinity |
shpc-registry automated BioContainers addition for infinity |
2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/influx-si-data-manager |
singularity registry hpc automated addition for influx-si-data-manager |
influx_si_data_manager, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/influx_si |
shpc-registry automated BioContainers addition for influx_si |
ff2ftbl, ff2ftbl.py, ftbl2code, ftbl2code.py, ftbl2cumoAb, ftbl2cumoAb.py, ftbl2kvh, ftbl2kvh.py, ftbl2labcin, ftbl2labcin.py, ftbl2metxml, ftbl2metxml.py, ftbl2mtf, ftbl2mtf.py, ftbl2netan, ftbl2netan.py, ftbl2optR, ftbl2optR.py, ftbl2xgmml, ftbl2xgmml.py, influx_i, influx_i.py, influx_s, influx_s.py, res2ftbl_meas, res2ftbl_meas.py, txt2ftbl, txt2ftbl.py, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/inforna |
shpc-registry automated BioContainers addition for inforna |
INFO-RNA, INFO-RNA-2.1.2, RNAmultifold, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold |
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GITHUB
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quay.io/biocontainers/inheritance |
shpc-registry automated BioContainers addition for inheritance |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/inmoose |
singularity registry hpc automated addition for inmoose |
qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, h5tools_test_utils, h5fuse.sh, h5delete, natsort, fonttools, pyftmerge, pyftsubset, ttx, tjbench, brotli, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug |
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GITHUB
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quay.io/biocontainers/insilicoseq |
shpc-registry automated BioContainers addition for insilicoseq |
iss, futurize, pasteurize, chardetect, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/insilicosv |
singularity registry hpc automated addition for insilicosv |
insilicosv, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/inspector |
singularity registry hpc automated addition for inspector |
debreak_detect.py, debreak_merge.py, debreak_merge_clustering.py, denovo_baseerror.py, denovo_correct.py, denovo_plot.py, denovo_static.py, flye, flye-minimap2, flye-modules, flye-samtools, inspector-correct.py, inspector.py, paftools.js, minimap2, f2py3.8, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim, wgsim_eval.pl, samtools, htsfile, bgzip |
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GITHUB
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quay.io/biocontainers/instanovo |
singularity registry hpc automated addition for instanovo |
datasets-cli, dotenv, huggingface-cli, jiwer, neptune, pygrun, x86_64-conda-linux-gnu.cfg, jsonpointer, torch_shm_manager, wsdump, get_gprof, svm-predict, svm-scale, svm-train, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, protoc-25.3.0, xxh128sum, xxh32sum, xxh64sum, mpg123, mpg123-id3dump, mpg123-strip, out123, xxhsum, dumpsexp, gpg-error, gpgrt-config, hmac256, mpicalc, yat2m |
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GITHUB
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quay.io/biocontainers/instrain |
shpc-registry automated BioContainers addition for instrain |
ScaffoldLevel_dRep.py, dRep, delta2vcf, inStrain, parse_stb.py, fastANI, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, combineMUMs, delta-filter, dnadiff, exact-tandems |
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GITHUB
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quay.io/biocontainers/insurveyor |
singularity registry hpc automated addition for insurveyor |
add_filtering_info, call_insertions, clip_consensus_builder, dc_remapper, filter, normalise, random_pos_generator.py, reads_categorizer, surveyor.py, faidx, f2py3.9, htsfile, bgzip, tabix, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/intarna |
shpc-registry automated BioContainers addition for intarna |
CopomuS.py, IntaRNA, IntaRNA1, IntaRNA2, IntaRNA3, IntaRNA_CSV_p-value.R, IntaRNA_plotRegions.R, IntaRNAduplex, IntaRNAens, IntaRNAexact, IntaRNAhelix, IntaRNAsTar, IntaRNAseed, RNAmultifold, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold |
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GITHUB
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quay.io/biocontainers/integron_finder |
shpc-registry automated BioContainers addition for integron_finder |
integron_finder, integron_merge, integron_split, cmalign, cmbuild, cmcalibrate, cmconvert, cmemit, cmfetch, cmpress, cmscan, cmsearch, cmstat |
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GITHUB
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quay.io/biocontainers/intemap |
shpc-registry automated BioContainers addition for intemap |
AtacDriver.py, Catrack, DAM2fasta, DB2fasta, DB2quiva, DBdust, DBrm, DBshow, DBsplit, DBstats, ESTmapper.pl, FilterCtgCov, HPCdaligner, HPCmapper, LAcat, LAcheck, LAmerge, LAshow, LAsort, LAsplit, Makefile, Makefile.am, Makefile.in, PBcR, SCFtoCTG, abyss-db-csv, aclocal.bak, addCNSToStore, addReadsToUnitigs, analyzeBest, analyzePosMap, analyzeScaffolds, asmOutputFasta, asmOutputStatistics, asmToAGP.pl, atac.pl, automake.bak, bam2sam, bazel-scan.py, blasr, bogart, bogus, bogusness, buildPosMap, buildRefContigs, buildUnitigs, build_bithash, ca2ace.pl, caqc.pl, caqc_help.ini, cat-corrects, cat-erates, cgw, cgwDump, chimChe, chimera, classifyMates, classifyMatesApply, classifyMatesPairwise, cleanAtac, cleanPolishes, clumpMaker, coalesceMatches, comparePolishes, computeCoverageStat, configureESTmapper.pl, convert-fasta-to-v2.pl, convertOverlap, convertPolishes, convertSamToCA, convertToAtac, convertToExtent, convertToPBCNS, correct, correct-frags, correct-olaps, correctGaps, correctPacBio, count-kmers, count-qmers, cov_model.py, cov_model.r, cov_model_qmer.r, ctgcns, ctgvalidate, daligner, dazcon, deduplicate, demotePosMap, depthOfPolishes, detectChimera, dumpCloneMiddles, dumpPBRLayoutStore, dumpSingletons, erate-estimate, estimate-mer-threshold, existDB, extendClearRanges, extendClearRangesPartition, extractSequence, extractUnmapped, extract_fastqread, extractmessages, fa2fq, fa2fq.o, falcon-bench, falcon-print-routes, falcon_sense, fasta2DAM, fasta2DB, fastaToCA, fastatrans, fastqAnalyze, fastqSample, fastqSimulate, fastqSimulate-sort, fastqToCA, fastqtofasta, filterEST, filterESTsimple, filterMRNA, filterNULL, filterOverlap, filterPolishes, filter_blat, filter_blat.o, filter_contigs, filter_contigs.o, filterfa, filterfa.o, filtertest, finalTrim, fixPolishesIID, fixUnitigs, fq2fa, fq2fa.o, fragmentDepth, fragsInVars, frgs2clones, gapShifter, gatekeeper, gatekeeperbench, gkpStoreCreate, gkpStoreDumpFASTQ, godnadiff_pairctg.sh, gomapandfilter.sh, gomerge.sh, greedyFragmentTiling, greedy_layout_to_IUM, happy-clones-span-clumps, headPolishes, heavychains, hitConverter, idba, idba.o, idba_hybrid, idba_hybrid.o, idba_tran, idba_tran.o, idba_tran_test, idba_tran_test.o, idba_ud, idba_ud.o, initialTrim, kmer-mask, kmer_hist.r, leaff, lengthFilter, makeplot.pl, mapMers, mapMers-depth, mappedCoverage, markRepeatUnique, markUniqueUnique, matchExtender, merTrim, merTrimApply, mercy, mergeCounts, mergePolishes, mergeassembly, mergefastq-p, mergeprocess.sh, mergeqc.pl, metagenomics_ovl_analyses, mismatchCounter, mt19937ar-test, olap-from-seeds, ompi-dvm, ompi-ps, ompi-submit, ompi-top, orte-dvm, orte-ps, orte-submit, orte-top, outputLayout, overlap, overlapInCore, overlapStats, overlapStore, overlapStoreBucketizer, overlapStoreBuild, overlapStoreIndexer, overlapStoreSorter, overlap_partition, overmerry, pacBioToCA, parallel_blat, parallel_blat.o, parallel_rna_blat, parallel_rna_blat.o, parseSNP, pbdagcon, pbindex, pbindexdump, pbmerge, pbutgcns, pickBestPair, pickBestPolish, pickUniquePolish, plotCoverageVsIdentity, positionDB, print_graph, print_graph.o, projectFeatures, puncsamfile.sh, quake.py, quiva2DB, raw_n50, raw_n50.o, realignPolishes, removeDuplicate, removeMateOverlap, removeRedundant, remove_fragment, replaceUIDwithName-fastq, replaceUIDwithName-posmap, reportAlignmentDifferences, resolveSurrogates, rewriteCache, rfheader, run-unittest.py, runCA, runCA-dedupe, runCA-overlapStoreBuild, runCA.bak, runConcurrently.pl, runInteMAP.py, run_greedy.csh, runabyss.py, runcabog.py, runerrcor.py, runidba.py, runquake.py, runrfh.py, sample_reads, sample_reads.o, scaffold, scaffold.o, scan.py, seagen, seatac, sffToCA, show-corrects, shuffle_reads, shuffle_reads.o, sim4db, sim_reads, sim_reads.o, sim_reads_tran, sim_reads_tran.o, simple, simulator, sortHits, sortPolishes, sort_psl, sort_psl.o, sort_reads, sort_reads.o, splitUnitigs, split_fa, split_fa.o, split_fq, split_fq.o, split_scaffold, split_scaffold.o, statsGenerator, summarizePolishes, terminate, terminator, test-merStream, test-seqCache, test-seqStream, test.o, testAtac, tigStore, tracearchiveToCA, tracedb-to-frg.pl, trimFastqByQVWindow, uidclient, uniqPolishes, uniqueFilter, unitigger, upgrade-v8-to-v9, upgrade-v9-to-v10, utg2fasta, utgcns, utgcnsfix, validate_blat, validate_blat_parallel, validate_blat_parallel_local, validate_blat_parallel_rna, validate_component, validate_component.o, validate_contigs_blat, validate_contigs_blat.o, validate_contigs_mummer, validate_contigs_mummer.o, validate_mummer, validate_reads_blat, validate_reads_blat.o, validate_rna, validate_rna.o, vennPolishes, abyss-bloom-dbg, abyss-db-txt, abyss-dida, abyss-paired-dbg, abyss-paired-dbg-mpi, abyss-sealer, ABYSS, ABYSS-P, AdjList, Consensus |
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GITHUB
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quay.io/biocontainers/interleafq |
shpc-registry automated BioContainers addition for interleafq |
fqc, fqlen.pl, interleafq, perl5.32.1, streamzip |
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GITHUB
|
quay.io/biocontainers/intermine |
shpc-registry automated BioContainers addition for intermine |
normalizer, xslt-config, xsltproc, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/interproscan |
shpc-registry automated BioContainers addition for interproscan |
2ft, 6ft, _gdlib-config, cath-assign-domains, cath-cluster, cath-map-clusters, cath-refine-align, cath-resolve-hits, cath-score-align, cath-ssap, cath-superpose, compare_2_profiles.pl, fasta_to_fastq.pl, gtop, hmmalign2, hmmbuild2, hmmcalibrate2, hmmconvert2, hmmemit2, hmmfetch2, hmmindex2, hmmpfam2, hmmsearch2, htop, interproscan.sh, make_iupac_cmp.pl, pfcalibrateV3, pfdump, pfemit, pfindex, pfmake, pfpam, pfscale, pfscan, pfscanV3, pfsearch, pfsearchV3, pfw, ps_scan.pl, psa2msa, ptof, ptoh, scramble_fasta.pl, sfld_postprocess, sfld_preprocess, sfld_preprocess.py, sort_fasta.pl, split_profile_file.pl, _bdftogd, _gd2copypal, _gd2togif, _gd2topng, _gdcmpgif, _gdparttopng, _gdtopng, _giftogd2, _pngtogd, _pngtogd2 |
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GITHUB
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quay.io/biocontainers/interval-binning |
singularity registry hpc automated addition for interval-binning |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/intervals |
shpc-registry automated BioContainers addition for intervals |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/intervaltree |
shpc-registry automated BioContainers addition for intervaltree |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/intervaltree_bio |
shpc-registry automated BioContainers addition for intervaltree_bio |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/intervene |
shpc-registry automated BioContainers addition for intervene |
intervene, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, shiftBed, annotateBed |
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GITHUB
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quay.io/biocontainers/involucro |
shpc-registry automated BioContainers addition for involucro |
involucro |
|
GITHUB
|
quay.io/biocontainers/ionquant |
singularity registry hpc automated addition for ionquant |
ionquant, jwebserver, pcre2posix_test, jpackage, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, cups-config, ippeveprinter, ipptool, hb-info, tjbench, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java |
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GITHUB
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quay.io/biocontainers/iow |
singularity registry hpc automated addition for iow |
bp, ipython3.9, aec, doesitcache, ipython3, ipython, cygdb, cython, cythonize, py.test, pytest, natsort, pygmentize, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, f2py3.9, opj_compress, opj_decompress, opj_dump, h5clear, h5format_convert, h5watch, h5fc |
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GITHUB
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quay.io/biocontainers/iphop |
singularity registry hpc automated addition for iphop |
bdf2gdfont.PLS, crt, cvtbdf.pl, import_pb_to_tensorboard, iphop, matplotlib, pilercr, bp_pairwise_kaks.pl, bp_search2BSML.pl, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2, bam2bedgraph, tflite_convert, saved_model_cli, toco, toco_from_protos, perl5.22.0, tensorboard, ace.pl, ccconfig, SOAPsh.pl, map, mirrorMappings, mkCSGB2312 |
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GITHUB
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quay.io/biocontainers/ipk |
singularity registry hpc automated addition for ipk |
ipk-aa, ipk-aa-pos, ipk-dna, ipk.py, ipkdiff-aa, ipkdiff-dna, ipkdump-aa, ipkdump-dna, phyml, phyml-mpi, phytime, raxml-ng, raxml-ng-mpi, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun, shmemcc, shmemfort, shmemrun, aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info, opal_wrapper, orte-clean, orte-info, orte-server, ortecc, orted |
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GITHUB
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quay.io/biocontainers/iptkl |
shpc-registry automated BioContainers addition for iptkl |
colorcet, compare_gos.py, dash-generate-components, fetch_associations.py, find_enrichment.py, go_plot.py, holoviews, map_to_slim.py, ncbi_gene_results_to_python.py, nglview, panel, plot_go_term.py, prt_terms.py, renderer, send2trash, wr_hier.py, wr_sections.py, svm-predict, svm-scale, svm-train, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, vba_extract.py, jupyter-nbconvert, CreateDOMDocument |
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GITHUB
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quay.io/biocontainers/ipyrad |
shpc-registry automated BioContainers addition for ipyrad |
ipcluster, ipcontroller, ipengine, ipyrad, mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, cutadapt, vsearch, jupyter-kernel |
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GITHUB
|
quay.io/biocontainers/ipython-cluster-helper |
shpc-registry automated BioContainers addition for ipython-cluster-helper |
ipcluster, ipcontroller, ipengine, jupyter-kernel, jupyter-kernelspec, jupyter-run, iptest3, curve_keygen, iptest, ipython3, ipython, jupyter, jupyter-migrate |
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GITHUB
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quay.io/biocontainers/iqkm |
shpc-registry automated BioContainers addition for iqkm |
epylint, iqkm, isort, isort-identify-imports, pylint, pyreverse, symilar, py.test, pytest, markdown_py, prodigal, hmmpgmd_shard, easel, esl-mixdchlet, qualfa2fq.pl, xa2multi.pl, esl-alimanip |
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GITHUB
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quay.io/biocontainers/iqtree |
shpc-registry automated BioContainers addition for iqtree |
iqtree, iqtree2 |
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GITHUB
|
quay.io/biocontainers/ir |
shpc-registry automated BioContainers addition for ir |
ir |
|
GITHUB
|
quay.io/biocontainers/irep |
shpc-registry automated BioContainers addition for irep |
bPTR, gc_skew, iRep, iRep_filter.py, qhelpconverter, pylupdate5, pyrcc5, pyuic5, sip, qdoc, gst-device-monitor-1.0, gst-discoverer-1.0, gst-play-1.0, fixqt4headers.pl |
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GITHUB
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quay.io/biocontainers/irescue |
shpc-registry automated BioContainers addition for irescue |
irescue, gawk-5.1.0, awk, gawk, normalizer, fasta-sanitize.pl, shiftBed, plot-ampliconstats, annotateBed, bamToBed, bamToFastq |
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GITHUB
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quay.io/biocontainers/irfinder |
shpc-registry automated BioContainers addition for irfinder |
IRFinder, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/irida-linker |
shpc-registry automated BioContainers addition for irida-linker |
ngsArchiveLinker.pl, lwp-download, lwp-dump, lwp-mirror, lwp-request, json_xs, perl5.26.2, podselect |
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GITHUB
|
quay.io/biocontainers/irida-sistr-results |
shpc-registry automated BioContainers addition for irida-sistr-results |
irida-sistr-results, vba_extract.py, f2py3.7, chardetect, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config |
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GITHUB
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quay.io/biocontainers/irida-staramr-results |
shpc-registry automated BioContainers addition for irida-staramr-results |
irida-staramr-results, vba_extract.py, f2py3.10, chardetect, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/irida-uploader |
shpc-registry automated BioContainers addition for irida-uploader |
integration-test, irida-uploader, irida-uploader-gui, normalizer, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
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quay.io/biocontainers/irissv |
shpc-registry automated BioContainers addition for irissv |
iris, iris.jar, racon, rampler, racon_wrapper, sdust, paftools.js, minimap2, k8, fasta-sanitize.pl, plot-ampliconstats, jfr |
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GITHUB
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quay.io/biocontainers/irma |
shpc-registry automated BioContainers addition for irma |
IRMA, LABEL, QUICK_INSTALL.txt, zip, blat, metadata_conda_debug.yaml, FastTreeMP, muscle, FastTree, fasttree, parsort, pigz, unpigz |
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GITHUB
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quay.io/biocontainers/isa-rwval |
singularity registry hpc automated addition for isa-rwval |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/isaac4 |
shpc-registry automated BioContainers addition for isaac4 |
isaac-align, isaac-merge-references, isaac-pack-reference, isaac-reorder-reference, isaac-sort-reference, isaac-unpack-reference, chrpath, gnuplot, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, compile-et.pl, gdlib-config, prerr.properties |
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GITHUB
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quay.io/biocontainers/isafe |
shpc-registry automated BioContainers addition for isafe |
isafe, gff2gff.py, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, f2py3.9, htsfile |
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GITHUB
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quay.io/biocontainers/isatools |
shpc-registry automated BioContainers addition for isatools |
isatools, mzml2isa, pronto, createfontdatachunk.py, enhancer.py, explode.py, gifmaker.py, painter.py, player.py, thresholder.py, viewer.py, pilconvert.py, pildriver.py |
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GITHUB
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quay.io/biocontainers/iseq |
singularity registry hpc automated addition for iseq |
abi-dump.2.11.0, abi-load.2, abi-load.2.11.0, align-cache.2.11.0, align-info.2.11.0, ascli, ascp, asession, aspera-license, axel, bam-load.2.11.0, cache-mgr.2.11.0, ccextract.2, ccextract.2.11.0, cg-load.2.11.0, fasterq-dump-orig.2.11.0, fasterq-dump.2.11.0, fastq-dump-orig.2.11.0, fastq-dump.2.11.0, fastq-load.2, fastq-load.2.11.0, helicos-load.2, helicos-load.2.11.0, illumina-dump.2.11.0, illumina-load.2, illumina-load.2.11.0, iseq, kar.2.11.0, kdbmeta.2.11.0, kget.2.11.0, latf-load.2.11.0, md5cp.2.11.0, pacbio-load.2, pacbio-load.2.11.0, pacbio-loadxml.2, pacbio-loadxml.2.11.0, prefetch-orig.2.11.0, prefetch.2.11.0, rbs, rcexplain.2.11.0, rdbg, read-filter-redact.2.11.0, sam-dump-orig.2.11.0, sam-dump.2.11.0, sff-dump.2.11.0, sff-load.2, sff-load.2.11.0, sra-pileup-orig.2.11.0, sra-pileup.2.11.0, sra-sort-cg.2.11.0, sra-sort.2.11.0, sra-stat.2.11.0, srapath-orig.2.11.0, srapath.2.11.0, sratools.2.11.0, srf-load.2, srf-load.2.11.0, test-sra.2.11.0, typeprof, vdb-config.2.11.0, vdb-copy.2.11.0, vdb-decrypt.2.11.0, vdb-diff.2.11.0, vdb-dump-orig.2.11.0, vdb-dump.2.11.0, vdb-encrypt.2.11.0, vdb-lock.2.11.0, vdb-passwd.2.11.0, vdb-unlock.2.11.0, vdb-validate.2.11.0, abi-load, ccextract, fastq-load, helicos-load, illumina-load, pacbio-load, pacbio-loadxml, sff-load, srf-load, align-cache.2, md5cp.2, racc, read-filter-redact.2, sra-sort-cg.2, vdb-diff.2, sratools.2, abi-dump.2, align-cache, align-info.2, bam-load.2, cache-mgr.2, cg-load.2, fasterq-dump.2, fastq-dump.2, illumina-dump.2 |
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GITHUB
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quay.io/biocontainers/isescan |
shpc-registry automated BioContainers addition for isescan |
FragGeneScan, constants.py, isPredict.py, is_analysis.py, isescan.py, pred.py, pyssw.py, run_FragGeneScan.pl, ssw_wrap.py, tools.py, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides |
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GITHUB
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quay.io/biocontainers/islandpath |
shpc-registry automated BioContainers addition for islandpath |
islandpath, l4p-tmpl, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml, basemlg, chi2, codeml, evolver |
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GITHUB
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quay.io/biocontainers/ismapper |
shpc-registry automated BioContainers addition for ismapper |
compiled_table.py, create_output.py, ismap, ismap.py, mapping_to_query.py, mapping_to_ref.py, read_grouping.py, run_commands.py, CA.pm, cacert.pem, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras, pm-collect, readme.pdf |
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GITHUB
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quay.io/biocontainers/isocor |
shpc-registry automated BioContainers addition for isocor |
isocor, isocorcli, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/isodate |
shpc-registry automated BioContainers addition for isodate |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/isonclust |
shpc-registry automated BioContainers addition for isonclust |
|
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GITHUB
|
quay.io/biocontainers/isonclust2 |
shpc-registry automated BioContainers addition for isonclust2 |
isONclust2 |
|
GITHUB
|
quay.io/biocontainers/isoncorrect |
shpc-registry automated BioContainers addition for isoncorrect |
isONcorrect, run_isoncorrect, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/isonform |
singularity registry hpc automated addition for isonform |
isONform_parallel, main, spoa, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/isoplot |
shpc-registry automated BioContainers addition for isoplot |
colorcet, isoplot, jupyter-dejavu, jupyter-execute, send2trash, runxlrd.py, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run, iptest3 |
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GITHUB
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quay.io/biocontainers/isoquant |
shpc-registry automated BioContainers addition for isoquant |
isoquant.py, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, sdust |
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GITHUB
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quay.io/biocontainers/isoseq3 |
shpc-registry automated BioContainers addition for isoseq3 |
isoseq3 |
|
GITHUB
|
quay.io/biocontainers/isospecpy |
singularity registry hpc automated addition for isospecpy |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/itero |
shpc-registry automated BioContainers addition for itero |
dipspades.py, gawk-5.0.1, itero, spades-dipspades-core, egrep, fgrep, grep, spades-bwa, spades-core, spades-corrector-core, spades-gbuilder, spades-gmapper, spades-hammer, spades-ionhammer |
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GITHUB
|
quay.io/biocontainers/itk |
shpc-registry automated BioContainers addition for itk |
itkTestDriver, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, ncurses5-config, ncursesw5-config |
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GITHUB
|
quay.io/biocontainers/itol-config |
singularity registry hpc automated addition for itol-config |
itol-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
|
quay.io/biocontainers/itolapi |
shpc-registry automated BioContainers addition for itolapi |
itol.py, itolexport.py, normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/itolparser |
shpc-registry automated BioContainers addition for itolparser |
itolparser, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/itsx |
shpc-registry automated BioContainers addition for itsx |
ITSx, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct |
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GITHUB
|
quay.io/biocontainers/itsxpress |
shpc-registry automated BioContainers addition for itsxpress |
aclocal.bak, autoheader.bak, autom4te.bak, automake.bak, autoreconf.bak, autoscan.bak, autoupdate.bak, ifnames.bak, itsxpress, kmutate.sh, runhmm.sh, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, sketchblacklist2.sh |
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GITHUB
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quay.io/biocontainers/iucn_sim |
shpc-registry automated BioContainers addition for iucn_sim |
iucn_sim, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin, jpgicc, linkicc, psicc |
|
GITHUB
|
quay.io/biocontainers/iva |
shpc-registry automated BioContainers addition for iva |
basqcol, fetchseq, iva, iva_qc, iva_qc_make_db, mixreads, readstats, simqual, simread, smalt, splitmates, splitreads, trunkreads, kmc, kmc_dump, kmc_tools, fastaq, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter |
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GITHUB
|
quay.io/biocontainers/ivar |
shpc-registry automated BioContainers addition for ivar |
ivar, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa |
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GITHUB
|
quay.io/biocontainers/jaeger-bio |
singularity registry hpc automated addition for jaeger-bio |
Jaeger, Jaeger_parallel, flatc, h5tools_test_utils, protoc-24.4.0, import_pb_to_tensorboard, h5fuse.sh, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, h5delete, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, markdown_py, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub |
|
GITHUB
|
quay.io/biocontainers/jaffa |
shpc-registry automated BioContainers addition for jaffa |
bg-bpipe, bpipe, bpipe-groovy, bpipe-pbspro.sh, bpipe-slurm.sh, bpipe-torque.sh, bpipe-utils.sh, faToNib, fasta_clipping_histogram.pl, fasta_formatter, fasta_nucleotide_changer, fastq_masker, fastq_quality_boxplot_graph.sh, fastq_quality_converter, fastq_quality_filter, fastq_quality_trimmer, fastq_to_fasta, fastx_artifacts_filter, fastx_barcode_splitter.pl, fastx_clipper, fastx_collapser, fastx_nucleotide_distribution_graph.sh, fastx_nucleotide_distribution_line_graph.sh, fastx_quality_stats, fastx_renamer, fastx_reverse_complement, fastx_trimmer, fastx_uncollapser, gfClient, gfServer, groovy_script, jaffa-assembly, jaffa-direct, jaffa-hybrid, nibFrag, oases, oases_pipeline.py, pslPretty, pslReps, pslSort, kmutate.sh, nosetests-3.9, runhmm.sh, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, twoBitToFa, alltoall.sh, analyzesketchresults.sh, blat |
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GITHUB
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quay.io/biocontainers/jali |
shpc-registry automated BioContainers addition for jali |
jali, jscan, jsearch |
|
GITHUB
|
quay.io/biocontainers/jalview |
shpc-registry automated BioContainers addition for jalview |
jalview, cups-config, ippeveprinter, ipptool, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/jamm |
shpc-registry automated BioContainers addition for jamm |
JAMM.sh, SignalGenerator.sh, bincalculator.r, peakfilter.pl, peakfinder.r, peakhelper.r, readshifter.pl, signalmaker.r, xcorr.r, xcorrhelper.r, gawk-5.1.0, awk, gawk, perl5.32.0, build_env_setup.sh, conda_build.sh, x86_64-conda-linux-gnu-gfortran.bin, streamzip |
|
GITHUB
|
quay.io/biocontainers/jannovar-cli |
shpc-registry automated BioContainers addition for jannovar-cli |
jannovar, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/jarvis |
shpc-registry automated BioContainers addition for jarvis |
JARVIS |
|
GITHUB
|
quay.io/biocontainers/jarvis3 |
singularity registry hpc automated addition for jarvis3 |
JARVIS3, JARVIS3.sh, JARVIS3.sh.bak, XScoreC, XScoreD |
|
GITHUB
|
quay.io/biocontainers/jasmine |
shpc-registry automated BioContainers addition for jasmine |
jasmine, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/jasminesv |
shpc-registry automated BioContainers addition for jasminesv |
igv_jasmine, iris, iris.jar, jasmine, jasmine.jar, jasmine_igv.jar, jasmine_iris.jar, racon, rampler, racon_wrapper, sdust, paftools.js, minimap2, k8, fasta-sanitize.pl, plot-ampliconstats, jaotc |
|
GITHUB
|
quay.io/biocontainers/jass |
shpc-registry automated BioContainers addition for jass |
celery, jass, flask, pt2to3, ptdump, ptrepack, pttree, chardetect, f2py3.9, opj_compress, opj_decompress, opj_dump |
|
GITHUB
|
quay.io/biocontainers/jass_preprocessing |
shpc-registry automated BioContainers addition for jass_preprocessing |
jass_preprocessing, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc |
|
GITHUB
|
quay.io/biocontainers/java-jdk |
shpc-registry automated BioContainers addition for java-jdk |
extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/jbrowse |
shpc-registry automated BioContainers addition for jbrowse |
|
|
GITHUB
|
quay.io/biocontainers/jbrowse2 |
shpc-registry automated BioContainers addition for jbrowse2 |
check-disorder.pl, corepack, gff3sort.pl, jbrowse, node, npm, npx, findrule, gff2gff.py, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, fasta-sanitize.pl |
|
GITHUB
|
quay.io/biocontainers/jcast |
shpc-registry automated BioContainers addition for jcast |
jcast, x86_64-conda_cos7-linux-gnu-ld, fonttools, pyftmerge, pyftsubset, ttx, normalizer, tqdm, brotli, f2py3.10, opj_compress |
|
GITHUB
|
quay.io/biocontainers/jccirc |
singularity registry hpc automated addition for jccirc |
CircSimu, CircSimu.pl, JCcirc, JCcirc.pl, qualfa2fq.pl, xa2multi.pl, bwa |
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GITHUB
|
quay.io/biocontainers/jclusterfunk |
singularity registry hpc automated addition for jclusterfunk |
jclusterfunk, jwebserver, jpackage, cups-config, ippeveprinter, ipptool, hb-info, jfr, tjbench, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb |
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GITHUB
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quay.io/biocontainers/jcvi |
shpc-registry automated BioContainers addition for jcvi |
compare_gos.py, coveralls, cpuinfo, fetch_associations.py, find_enrichment.py, go_plot.py, map_to_slim.py, ncbi_gene_results_to_python.py, plot_go_term.py, prt_terms.py, py.test-benchmark, pytest-benchmark, wr_hier.py, wr_sections.py, coverage, gffutils-cli, vba_extract.py, ete3, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, xkbcli, jp.py |
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GITHUB
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quay.io/biocontainers/je-suite |
shpc-registry automated BioContainers addition for je-suite |
je, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/jellyfish |
shpc-registry automated BioContainers addition for jellyfish |
jellyfish |
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GITHUB
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quay.io/biocontainers/jemalloc |
shpc-registry automated BioContainers addition for jemalloc |
jemalloc-config, jemalloc.sh, jeprof |
|
GITHUB
|
quay.io/biocontainers/jgoslin |
shpc-registry automated BioContainers addition for jgoslin |
jgoslin, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink |
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GITHUB
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quay.io/biocontainers/jmespath |
shpc-registry automated BioContainers addition for jmespath |
jp.py, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
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quay.io/biocontainers/jms-metabolite-services |
singularity registry hpc automated addition for jms-metabolite-services |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, python3.1 |
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GITHUB
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quay.io/biocontainers/jmztab-m |
shpc-registry automated BioContainers addition for jmztab-m |
jmztab-m, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/joblib |
shpc-registry automated BioContainers addition for joblib |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/jobtree |
shpc-registry automated BioContainers addition for jobtree |
jobTreeKill, jobTreeRestarts, jobTreeStats, jobTreeStatus, multijob, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/jolytree |
shpc-registry automated BioContainers addition for jolytree |
JolyTree.sh, REQ, fastme, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, gawk-5.1.0, awk, gawk, jfr, jaotc |
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GITHUB
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quay.io/biocontainers/jpredapi |
shpc-registry automated BioContainers addition for jpredapi |
jpredapi, chardetect, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/jq |
shpc-registry automated BioContainers addition for jq |
jq, onig-config |
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GITHUB
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quay.io/biocontainers/jronn |
singularity registry hpc automated addition for jronn |
jronn, jwebserver, pcre2posix_test, jpackage, cups-config, ippeveprinter, ipptool, hb-info, tjbench, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole |
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GITHUB
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quay.io/biocontainers/json_collect_data_source |
shpc-registry automated BioContainers addition for json_collect_data_source |
json_collect_data_source.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/julia-divand |
singularity registry hpc automated addition for julia-divand |
7z, 7za, 7zr, git2_cli, julia, mbedtls_aead_demo, mbedtls_benchmark, mbedtls_cert_app, mbedtls_cert_req, mbedtls_cert_write, mbedtls_cipher_aead_demo, mbedtls_crl_app, mbedtls_crypt_and_hash, mbedtls_crypto_examples, mbedtls_dh_client, mbedtls_dh_genprime, mbedtls_dh_server, mbedtls_dtls_client, mbedtls_dtls_server, mbedtls_ecdh_curve25519, mbedtls_ecdsa, mbedtls_gen_entropy, mbedtls_gen_key, mbedtls_gen_random_ctr_drbg, mbedtls_generic_sum, mbedtls_hello, mbedtls_hmac_demo, mbedtls_key_app, mbedtls_key_app_writer, mbedtls_key_ladder_demo, mbedtls_key_ladder_demo.sh, mbedtls_load_roots, mbedtls_md_hmac_demo, mbedtls_mini_client, mbedtls_mpi_demo, mbedtls_pem2der, mbedtls_pk_decrypt, mbedtls_pk_encrypt, mbedtls_pk_sign, mbedtls_pk_verify, mbedtls_psa_constant_names, mbedtls_query_compile_time_config, mbedtls_req_app, mbedtls_rsa_decrypt, mbedtls_rsa_encrypt, mbedtls_rsa_genkey, mbedtls_rsa_sign, mbedtls_rsa_sign_pss, mbedtls_rsa_verify, mbedtls_rsa_verify_pss, mbedtls_selftest, mbedtls_ssl_client1, mbedtls_ssl_client2, mbedtls_ssl_context_info, mbedtls_ssl_fork_server, mbedtls_ssl_mail_client, mbedtls_ssl_pthread_server, mbedtls_ssl_server, mbedtls_ssl_server2, mbedtls_strerror, mbedtls_udp_proxy, mbedtls_zeroize, scalar, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, cmpfillin, gpmetis, graphchk, m2gmetis |
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GITHUB
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quay.io/biocontainers/julia |
shpc-registry automated BioContainers addition for julia |
julia, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis, ndmetis, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
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GITHUB
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quay.io/biocontainers/junit-xml |
shpc-registry automated BioContainers addition for junit-xml |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
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quay.io/biocontainers/jupiterplot |
singularity registry hpc automated addition for jupiterplot |
binlinks, bsmp2info, bundlelinks, calcdatarange, clustal2link, colorinterpolate, convertlinks, filterlinks, fsa2xml, gbf2info, jupiter, just-top-hits, make-conf, make-table, orderchr, parse-category, parse-table, pl2bat.pl, randomdata, randomlinks, resample, systematic-mutations, TMalign, make_pscores.pl, poa, circos, circos.exe, compile.bat, compile.make, gddiag, list.modules, test.modules, gawk-5.3.0, gawkbug, RNAmultifold, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc |
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GITHUB
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quay.io/biocontainers/jupyterngsplugin |
shpc-registry automated BioContainers addition for jupyterngsplugin |
croco-0.6-config, csslint-0.6, jupyter-console, jupyter-qtconsole, x86_64-conda_cos6-linux-gnu-pkg-config, g-ir-doc-tool, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect |
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GITHUB
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quay.io/biocontainers/justbackoff |
shpc-registry automated BioContainers addition for justbackoff |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/jvarkit-bamstats04 |
singularity registry hpc automated addition for jvarkit-bamstats04 |
bamstats04.sh, cups-config, ippeveprinter, ipptool, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs, pack200, rmic, rmid, unpack200, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd |
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GITHUB
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quay.io/biocontainers/k-slam |
shpc-registry automated BioContainers addition for k-slam |
SLAM, install_slam.sh, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/k8 |
shpc-registry automated BioContainers addition for k8 |
k8 |
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GITHUB
|
quay.io/biocontainers/kaiju |
shpc-registry automated BioContainers addition for kaiju |
kaiju, kaiju-addTaxonNames, kaiju-convertMAR.py, kaiju-convertNR, kaiju-excluded-accessions.txt, kaiju-gbk2faa.pl, kaiju-makedb, kaiju-mergeOutputs, kaiju-mkbwt, kaiju-mkfmi, kaiju-multi, kaiju-taxonlistEuk.tsv, kaiju2krona, kaiju2table, kaijup, kaijux, idn2, wget, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/kakscalculator2 |
shpc-registry automated BioContainers addition for kakscalculator2 |
AXTConvertor, ConPairs, KaKs_Calculator |
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GITHUB
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quay.io/biocontainers/kalamari |
singularity registry hpc automated addition for kalamari |
archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, downloadKalamari.pl, downloadKalamari.sh, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gbf2fsa, gbf2ref, generate_sepia_reference.py, getExactTaxonomy.pl, gm2ranges, gm2segs, ini2xml, jsonl2xml, just-first-key, mobsuiteRepresentativeFasta.pl, nhance.sh, pma2apa, pma2pme, pmc2bioc, pmc2info, quote-grouped-elements, ref2pmid, refseq-nm-cds, scn2xml, stream-local, test-pmc-index, toml2xml, validateTaxonomy.pl, yaml2xml, kraken, kraken-build, kraken-filter, kraken-mpa-report, kraken-report, kraken-translate, kraken2, kraken2-build, kraken2-inspect, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, blastn_vdb, tblastn_vdb, jellyfish, tar, config_data, test_pcre, filter-columns, fuse-segments, gene2range, tbl2prod |
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GITHUB
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quay.io/biocontainers/kalign2 |
shpc-registry automated BioContainers addition for kalign2 |
kalign |
|
GITHUB
|
quay.io/biocontainers/kalign3 |
shpc-registry automated BioContainers addition for kalign3 |
kalign, kchaos |
|
GITHUB
|
quay.io/biocontainers/kallisto |
shpc-registry automated BioContainers addition for kallisto |
kallisto, mirror_server, mirror_server_stop, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy |
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GITHUB
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quay.io/biocontainers/kaptive |
shpc-registry automated BioContainers addition for kaptive |
kaptive.py, test_pcre, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, seedtop, run_with_lock, blast_formatter, blastdb_aliastool, blastdbcheck |
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GITHUB
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quay.io/biocontainers/karect |
shpc-registry automated BioContainers addition for karect |
karect |
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GITHUB
|
quay.io/biocontainers/kart |
shpc-registry automated BioContainers addition for kart |
bwt_index, kart |
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GITHUB
|
quay.io/biocontainers/karyopype |
shpc-registry automated BioContainers addition for karyopype |
qhelpconverter, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner, repc, pylupdate5, pyrcc5 |
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GITHUB
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quay.io/biocontainers/kat |
shpc-registry automated BioContainers addition for kat |
kat, kat_distanalysis, kat_jellyfish, kat_plot_cold, kat_plot_density, kat_plot_profile, kat_plot_spectra_cn, kat_plot_spectra_hist, kat_plot_spectra_mx, tabulate, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
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quay.io/biocontainers/kb-python |
shpc-registry automated BioContainers addition for kb-python |
bustools, jupyter-dejavu, jupyter-execute, kallisto, kb, loompy, shortuuid, scanpy, jupyter-nbconvert, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, jupyter-kernel, jupyter-kernelspec, jupyter-run, pybabel |
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GITHUB
|
quay.io/biocontainers/kcalign |
shpc-registry automated BioContainers addition for kcalign |
kalign, kc-align, timescorealn, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns, mafft-fftnsi |
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GITHUB
|
quay.io/biocontainers/kcounter |
shpc-registry automated BioContainers addition for kcounter |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/keepalive |
shpc-registry automated BioContainers addition for keepalive |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
|
quay.io/biocontainers/kegalign-full |
singularity registry hpc automated addition for kegalign-full |
bash, bashbug, diagonal_partition.py, kegalign, lastz, lastz-cmd.ini, lastz_32, lastz_D, mbuffer, package_output.py, run_kegalign, run_lastz_tarball.py, runner.py, time, gunzip, gzexe, gzip, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zmore, znew, egrep, fgrep, grep, gawk-5.3.0, gawkbug, faToTwoBit, annot-tsv, basenc, b2sum, ls, base32 |
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GITHUB
|
quay.io/biocontainers/kegg-pathways-completeness |
singularity registry hpc automated addition for kegg-pathways-completeness |
generate_hmmtable, give_pathways, numpy-config, parsing_hmmscan, plot_completeness_graphs, diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts, transform, rsvg-convert, gtk-builder-convert, gtk-demo, gtk-query-immodules-2.0, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, acyclic, bcomps, ccomps, circo, dijkstra |
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GITHUB
|
quay.io/biocontainers/keggcharter |
shpc-registry automated BioContainers addition for keggcharter |
KEGGCharter_prokaryotic_maps.txt, keggcharter.py, keggpathway_map.py, pdfsig, pdfattach, pdfdetach, pdffonts, pdfimages, pdfinfo, pdfseparate, pdftocairo, pdftohtml, pdftoppm |
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GITHUB
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quay.io/biocontainers/kerneltree |
shpc-registry automated BioContainers addition for kerneltree |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/kestrel |
singularity registry hpc automated addition for kestrel |
kestrel, jwebserver, jpackage, cups-config, ippeveprinter, ipptool, hb-info, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, tjbench, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb |
|
GITHUB
|
quay.io/biocontainers/kfoots |
shpc-registry automated BioContainers addition for kfoots |
|
|
GITHUB
|
quay.io/biocontainers/kggseq |
shpc-registry automated BioContainers addition for kggseq |
kggseq, kggseq1.log, giffilter, gifsponge, gifecho, gifinto, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/kgwasflow |
singularity registry hpc automated addition for kgwasflow |
jsondiff, jsonpatch, jsonpointer, kgwasflow, mamba-package, markdown-it, conda2solv, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, bsdcat, bsdcpio, bsdtar, conda-env, cph, stone, yte, plac_runner.py, docutils, f2py3.11, pulptest, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin |
|
GITHUB
|
quay.io/biocontainers/khipu-metabolomics |
singularity registry hpc automated addition for khipu-metabolomics |
2to3-3.12, idle3.12, khipu, pydoc3.12, python3.12, python3.12-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/khmer |
shpc-registry automated BioContainers addition for khmer |
abundance-dist-single.py, abundance-dist.py, annotate-partitions.py, count-median.py, do-partition.py, extract-long-sequences.py, extract-paired-reads.py, extract-partitions.py, fastq-to-fasta.py, filter-abund-single.py, filter-abund.py, filter-stoptags.py, find-knots.py, interleave-reads.py, load-graph.py, load-into-counting.py, make-initial-stoptags.py, merge-partitions.py, normalize-by-median.py, partition-graph.py, readstats.py, sample-reads-randomly.py, split-paired-reads.py, trim-low-abund.py, unique-kmers.py, screed, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
|
quay.io/biocontainers/kid |
shpc-registry automated BioContainers addition for kid |
kid, kidc, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/kinamine_y_shaker |
shpc-registry automated BioContainers addition for kinamine_y_shaker |
KinamineY-shaker, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/kinex |
singularity registry hpc automated addition for kinex |
hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, numba, jupyter-trust, jupyter, jupyter-migrate, jupyter-troubleshoot, jsonschema, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config |
|
GITHUB
|
quay.io/biocontainers/king |
shpc-registry automated BioContainers addition for king |
king |
|
GITHUB
|
quay.io/biocontainers/kingfisher |
singularity registry hpc automated addition for kingfisher |
abi-dump.3, abi-dump.3.0.0, abi-load, abi-load.3, abi-load.3.0.0, align-cache.3, align-cache.3.0.0, align-info.3, align-info.3.0.0, aria2c, aws, aws.cmd, aws_bash_completer, aws_completer, aws_zsh_completer.sh, bam-load.3, bam-load.3.0.0, cache-mgr.3, cache-mgr.3.0.0, ccextract, ccextract.3, ccextract.3.0.0, cg-load.3, cg-load.3.0.0, check-corrupt, check-corrupt.3, check-corrupt.3.0.0, copycat, copycat.3, copycat.3.0.0, crc32sum, crc32sum.3, crc32sum.3.0.0, csv-import, dump-blob-boundaries, dump-blob-boundaries.3, dump-blob-boundaries.3.0.0, elasticurl, elasticurl_cpp, elastipubsub, f2py3.11, fastconv, fastconv.3, fastconv.3.0.0, fasterq-dump-orig.3.0.0, fasterq-dump.3, fasterq-dump.3.0.0, fastq-dump-orig.3.0.0, fastq-dump.3, fastq-dump.3.0.0, fastq-load, fastq-load.3, fastq-load.3.0.0, helicos-load, helicos-load.3, helicos-load.3.0.0, illumina-dump.3, illumina-dump.3.0.0, illumina-load, illumina-load.3, illumina-load.3.0.0, kar+, kar+.3, kar+.3.0.0, kar+meta, kar+meta.3, kar+meta.3.0.0, kar.3, kar.3.0.0, kdb-index, kdb-index.3, kdb-index.3.0.0, kdbmeta.3, kdbmeta.3.0.0, kingfisher, latf-load.3, latf-load.3.0.0, make-read-filter, make-read-filter.3, make-read-filter.3.0.0, md5cp.3, md5cp.3.0.0, ngs-pileup, ngs-pileup.3, ngs-pileup.3.0.0, orc-memory, orc-scan, pacbio-correct, pacbio-correct.3, pacbio-correct.3.0.0, pacbio-load, pacbio-load.3, pacbio-load.3.0.0, pacbio-loadxml, pacbio-loadxml.3, pacbio-loadxml.3.0.0, prefetch-orig.3.0.0, prefetch.3, prefetch.3.0.0, produce_x_platform_fuzz_corpus, qual-recalib-stat, qual-recalib-stat.3, qual-recalib-stat.3.0.0, rcexplain.3, rcexplain.3.0.0, read-filter-redact.3, read-filter-redact.3.0.0, rowwritetest, rowwritetest.3, rowwritetest.3.0.0, run_x_platform_fuzz_corpus, sam-dump-orig.3.0.0, sam-dump.3, sam-dump.3.0.0, samview, samview-util, samview-util.3, samview-util.3.0.0, samview.3, samview.3.0.0, schema-replace, schema-replace.3, schema-replace.3.0.0, sff-dump.3, sff-dump.3.0.0, sff-load, sff-load.3, sff-load.3.0.0, sharq, sharq.3, sharq.3.0.0, sortreadtest, sortreadtest.3, sortreadtest.3.0.0, sra-pileup-orig.3.0.0, sra-pileup.3, sra-pileup.3.0.0, sra-sort-cg.3, sra-sort-cg.3.0.0, sra-sort.3, sra-sort.3.0.0, sra-stat.3, sra-stat.3.0.0, sracat, srapath-orig.3.0.0, srapath.3, srapath.3.0.0, sratools.3, sratools.3.0.0, srf-load, srf-load.3, srf-load.3.0.0, test-download, test-download.3, test-download.3.0.0, test-read-write-cursor, test-read-write-cursor.3, test-read-write-cursor.3.0.0, test-sra.3, test-sra.3.0.0, testld, testld.3, testld.3.0.0, timezone-dump, txt2kdb, txt2kdb.3, txt2kdb.3.0.0, vdb-config.3, vdb-config.3.0.0, vdb-copy.3, vdb-copy.3.0.0, vdb-decrypt.3, vdb-decrypt.3.0.0, vdb-diff.3, vdb-diff.3.0.0, vdb-dump-orig.3.0.0, vdb-dump.3, vdb-dump.3.0.0, vdb-encrypt.3, vdb-encrypt.3.0.0, vdb-get, vdb-get.3, vdb-get.3.0.0, vdb-lock.3, vdb-lock.3.0.0, vdb-passwd.3, vdb-passwd.3.0.0, vdb-sql, vdb-sql.3, vdb-sql.3.0.0, vdb-unlock.3, vdb-unlock.3.0.0, vdb-validate.3, vdb-validate.3.0.0, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, align-cache, fasterq-dump-orig, fastq-dump-orig, md5cp, prefetch-orig, read-filter-redact, sam-dump-orig, sra-pileup-orig, sra-sort-cg, srapath-orig, vdb-diff, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, sratools, uuid, uuid-config |
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GITHUB
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quay.io/biocontainers/kinship-read |
singularity registry hpc automated addition for kinship-read |
kinship-read, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/kinsimriboswitch |
shpc-registry automated BioContainers addition for kinsimriboswitch |
addr2line, ar, as, barriers-RNA2, c++, c++filt, cc, cpp, dwp, elfedit, f95, g++, gcc, gcc-ar, gcc-nm, gcc-ranlib, gcov, gcov-dump, gcov-tool, gfortran, gfortran.bin, gold, gprof, kinGenMacrostates, kinPlot.R, kinSimRibo_mergeRateMats, kinSimRiboswitch, ld, ld.bfd, ld.gold, nm, objcopy, objdump, qd-config, ranlib, readelf, size, stoch_genDimerRates, strings, strip, structConnect, treekin, tts, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold |
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GITHUB
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quay.io/biocontainers/kipoi-conda |
shpc-registry automated BioContainers addition for kipoi-conda |
tqdm, futurize, pasteurize, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
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GITHUB
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quay.io/biocontainers/kipoi-utils |
shpc-registry automated BioContainers addition for kipoi-utils |
tqdm, futurize, pasteurize, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/kipoi |
shpc-registry automated BioContainers addition for kipoi |
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GITHUB
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quay.io/biocontainers/kipoi_veff |
shpc-registry automated BioContainers addition for kipoi_veff |
cookiecutter, ddls, kipoi, slugify, unidecode, cyvcf2, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py |
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GITHUB
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quay.io/biocontainers/kipoiseq |
shpc-registry automated BioContainers addition for kipoiseq |
cookiecutter, kipoi, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, tabulate, natsort, faidx, mirror_server, mirror_server_stop |
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GITHUB
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quay.io/biocontainers/kissplice |
shpc-registry automated BioContainers addition for kissplice |
bcalm, kissplice, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config, h5cc |
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GITHUB
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quay.io/biocontainers/kitsune |
singularity registry hpc automated addition for kitsune |
kitsune, jellyfish, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tqdm, normalizer, python3.1 |
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GITHUB
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quay.io/biocontainers/kiwidist |
shpc-registry automated BioContainers addition for kiwidist |
assistant-qt4, designer-qt4, lconvert-qt4, linguist-qt4, lrelease-qt4, lupdate-qt4, moc-qt4, pixeltool-qt4, pylupdate4, pyrcc4, pyuic4, qcollectiongenerator-qt4, qdbus-qt4, qdbuscpp2xml-qt4, qdbusviewer-qt4, qdbusxml2cpp-qt4, qdoc3-qt4, qhelpconverter-qt4, qhelpgenerator-qt4, qmake-qt4, qmlplugindump-qt4, qmlviewer-qt4, qt3to4-qt4, qtconfig-qt4, qttracereplay-qt4, rcc-qt4, uic-qt4, xmlpatterns-qt4, xmlpatternsvalidator-qt4, sip, chardetect, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/kleborate |
shpc-registry automated BioContainers addition for kleborate |
kaptive.py, kleborate, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod |
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GITHUB
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quay.io/biocontainers/kma |
shpc-registry automated BioContainers addition for kma |
kma, kma_index, kma_shm, kma_update |
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GITHUB
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quay.io/biocontainers/kmasker |
shpc-registry automated BioContainers addition for kmasker |
Kmasker, cmasker, fastq-clipper, fastq-join, fastq-mcf, fastq-multx, fastq-stats, gffread, which, jemalloc-config, jeprof, jemalloc.sh, jellyfish, basenc, b2sum, base32, base64, basename, cat |
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GITHUB
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quay.io/biocontainers/kmc |
shpc-registry automated BioContainers addition for kmc |
kmc, kmc_dump, kmc_tools |
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GITHUB
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quay.io/biocontainers/kmcp |
singularity registry hpc automated addition for kmcp |
kmcp |
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GITHUB
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quay.io/biocontainers/kmd_hmdb_api_client |
singularity registry hpc automated addition for kmd_hmdb_api_client |
httpx, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
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quay.io/biocontainers/kmer-db |
shpc-registry automated BioContainers addition for kmer-db |
kmer-db |
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GITHUB
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quay.io/biocontainers/kmer-jellyfish |
shpc-registry automated BioContainers addition for kmer-jellyfish |
jellyfish |
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GITHUB
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quay.io/biocontainers/kmercamel |
singularity registry hpc automated addition for kmercamel |
kmercamel, glpsol |
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GITHUB
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quay.io/biocontainers/kmerfinder |
singularity registry hpc automated addition for kmerfinder |
download-db.sh, kma, kma_index, kma_shm, kma_update, kmerfinder.py, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/kmergenie |
shpc-registry automated BioContainers addition for kmergenie |
__init__.py, cutoff.r, cutoff.r.bak, decide, decide.bak, docopt.py, est-genomic-kmers.r, est-genomic-kmers.r.bak, est-mean.r, est-mean.r.bak, est-params.r, est-params.r.bak, fit-histogram.r, fit-histogram.r.bak, generate_report.py, generate_report.py.bak, generate_report.pyc.bak, kmergenie, model-diploid.r, model-diploid.r.bak, model.r, model.r.bak, plot_genomic_kmers.r, plot_genomic_kmers.r.bak, plot_histogram.r, plot_histogram.r.bak, specialk, test_install, test_install.bak, wrapper.py, zeta.r, zeta.r.bak, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/kmerinshort |
shpc-registry automated BioContainers addition for kmerinshort |
KmerInShort |
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GITHUB
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quay.io/biocontainers/kmerstream |
shpc-registry automated BioContainers addition for kmerstream |
KmerStream, KmerStreamEstimate.py, KmerStreamJoin, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/kmertools |
singularity registry hpc automated addition for kmertools |
kmertools |
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GITHUB
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quay.io/biocontainers/kmtricks |
singularity registry hpc automated addition for kmtricks |
kmtricks, kmtricks-socks, kmtricksp |
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GITHUB
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quay.io/biocontainers/kneaddata |
shpc-registry automated BioContainers addition for kneaddata |
kneaddata, kneaddata_bowtie2_discordant_pairs, kneaddata_build_database, kneaddata_database, kneaddata_read_count_table, kneaddata_test, kneaddata_trf_parallel, trf4.10.0-rc.2.linux64.exe, trf, fastqc, trimmomatic, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s |
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GITHUB
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quay.io/biocontainers/knock-knock |
shpc-registry automated BioContainers addition for knock-knock |
knock-knock, STAR, STARlong, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool |
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GITHUB
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quay.io/biocontainers/knot-asm-analysis |
shpc-registry automated BioContainers addition for knot-asm-analysis |
fpa, gfapy-convert, gfapy-mergelinear, gfapy-renumber, gfapy-validate, knot, knot.analysis, knot.analysis.classifications, knot.analysis.hamilton_path, knot.extremity_search, knot.filter_tig, knot.path_search, knot.sg_generation, yacrd, x86_64-conda-linux-gnu-pkg-config, pulptest, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display |
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GITHUB
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quay.io/biocontainers/knot |
shpc-registry automated BioContainers addition for knot |
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GITHUB
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quay.io/biocontainers/knotinframe |
singularity registry hpc automated addition for knotinframe |
addRNAoptions.pl, gapc, knotinframe, knotinframe_knotted, knotinframe_nested, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/kobas |
shpc-registry automated BioContainers addition for kobas |
kobas-annotate, kobas-identify, kobas-run, build.sh, common.go, rchive.go, setup-deps.log, setup.sh, xtract.go, metadata_conda_debug.yaml, bt-context.txt, bt-link, bt-load |
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GITHUB
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quay.io/biocontainers/kodoja |
shpc-registry automated BioContainers addition for kodoja |
addTaxonNames, convertNR, convert_mar_to_kaiju.py, database_modules.py, diagnostic_modules.py, gbk2faa.pl, kaiju, kaiju2krona, kaijuReport, kaijup, kaijux, kodoja_build.py, kodoja_retrieve.py, kodoja_search.py, kraken, kraken-build, kraken-filter, kraken-mpa-report, kraken-report, kraken-translate, makeDB.sh, mergeOutputs, mkbwt, mkfmi, ncbi-genome-download, ngd, taxonlist.tsv, conv-template, from-template, fastqc, trimmomatic, jellyfish, extcheck, java-rmi.cgi, javah, jhat, jsadebugd |
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GITHUB
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quay.io/biocontainers/koeken |
shpc-registry automated BioContainers addition for koeken |
add_alpha_to_mapping_file.py, add_qiime_labels.py, adjust_seq_orientation.py, align_seqs.py, alpha_diversity.py, alpha_rarefaction.py, amplicon_contingency_table.py, ampliconnoise.py, assign_taxonomy.py, beta_diversity.py, beta_diversity_through_plots.py, beta_significance.py, blast_wrapper.py, categorized_dist_scatterplot.py, check_id_map.py, clean_raxml_parsimony_tree.py, cluster_quality.py, collapse_samples.py, collate_alpha.py, compare_alpha_diversity.py, compare_categories.py, compare_distance_matrices.py, compare_taxa_summaries.py, compare_trajectories.py, compute_core_microbiome.py, compute_taxonomy_ratios.py, conditional_uncovered_probability.py, consensus_tree.py, convert_fastaqual_fastq.py, convert_unifrac_sample_mapping_to_otu_table.py, core_diversity_analyses.py, count_seqs.py, demultiplex_fasta.py, denoise_wrapper.py, denoiser.py, denoiser_preprocess.py, denoiser_worker.py, detrend.py, differential_abundance.py, dissimilarity_mtx_stats.py, distance_matrix_from_mapping.py, estimate_observation_richness.py, exclude_seqs_by_blast.py, extract_barcodes.py, extract_reads_from_interleaved_file.py, extract_seqs_by_sample_id.py, filter_alignment.py, filter_distance_matrix.py, filter_fasta.py, filter_otus_by_sample.py, filter_otus_from_otu_table.py, filter_samples_from_otu_table.py, filter_taxa_from_otu_table.py, filter_tree.py, fix_arb_fasta.py, format_input.py, group_significance.py, hclust2.py, identify_chimeric_seqs.py, identify_missing_files.py, identify_paired_differences.py, indexdb_rna, inflate_denoiser_output.py, iptest2, ipython2, jackknifed_beta_diversity.py, join_paired_ends.py, koeken.py, lefse.py, load_remote_mapping_file.py, make_2d_plots.py, make_bipartite_network.py, make_bootstrapped_tree.py, make_distance_boxplots.py, make_distance_comparison_plots.py, make_emperor.py, make_fastq.py, make_library_id_lists.py, make_otu_heatmap.py, make_otu_heatmap_html.py, make_otu_network.py, make_otu_table.py, make_per_library_sff.py, make_phylogeny.py, make_prefs_file.py, make_qiime_py_file.py, make_rarefaction_plots.py, make_tep.py, map_reads_to_reference.py, merge_mapping_files.py, merge_otu_maps.py, merge_otu_tables.py, multiple_extract_barcodes.py, multiple_join_paired_ends.py, multiple_rarefactions.py, multiple_rarefactions_even_depth.py, multiple_split_libraries_fastq.py, neighbor_joining.py, nmds.py, normalize_table.py, observation_metadata_correlation.py, ompi-dvm, ompi-ps, ompi-top, orte-dvm, orte-ps, orte-top, otu_category_significance.py, parallel_align_seqs_pynast.py, parallel_alpha_diversity.py, parallel_assign_taxonomy_blast.py, parallel_assign_taxonomy_rdp.py, parallel_assign_taxonomy_uclust.py, parallel_beta_diversity.py, parallel_blast.py, parallel_identify_chimeric_seqs.py, parallel_map_reads_to_reference.py, parallel_merge_otu_tables.py, parallel_multiple_rarefactions.py, parallel_pick_otus_blast.py, parallel_pick_otus_sortmerna.py, parallel_pick_otus_trie.py, parallel_pick_otus_uclust_ref.py, parallel_pick_otus_usearch61_ref.py, pick_closed_reference_otus.py, pick_de_novo_otus.py, pick_open_reference_otus.py, pick_otus.py, pick_rep_set.py, plot_cladogram.py, plot_rank_abundance_graph.py, plot_semivariogram.py, plot_taxa_summary.py, poller.py, pretty_lefse.py, principal_coordinates.py, print_metadata_stats.py, print_qiime_config.py, process_iseq.py, process_qseq.py, process_sff.py, prun, pynast, pyqi, qcli_make_rst, qcli_make_script, quality_scores_plot.py, relatedness.py, run_lefse.py, shared_phylotypes.py, simsam.py, single_rarefaction.py, sort_otu_table.py, sortmerna, split_libraries.py, split_libraries_fastq.py, split_libraries_lea_seq.py, split_otu_table.py, split_otu_table_by_taxonomy.py, split_sequence_file_on_sample_ids.py, start_parallel_jobs.py, start_parallel_jobs_sc.py, start_parallel_jobs_slurm.py, start_parallel_jobs_torque.py, subsample_fasta.py, sumaclust, summarize_otu_by_cat.py, summarize_taxa.py, summarize_taxa_through_plots.py, supervised_learning.py, swarm, swarm_breaker.py, transform_coordinate_matrices.py, tree_compare.py, trflp_file_to_otu_table.py, trim_sff_primers.py, truncate_fasta_qual_files.py, truncate_reverse_primer.py, uclust, unweight_fasta.py, upgma_cluster.py, validate_demultiplexed_fasta.py, validate_mapping_file.py, enhancer.py, explode.py, gifmaker.py, painter.py, player.py, thresholder.py, viewer.py, biom, pilconvert.py, pildriver.py |
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GITHUB
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quay.io/biocontainers/kofamscan |
shpc-registry automated BioContainers addition for kofamscan |
bundle, bundler, exec_annotation, racc, racc2y, y2racc, gdbm_dump, gdbm_load, gdbmtool, erb, gem, irb, rake, rdoc, ri, ruby |
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GITHUB
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quay.io/biocontainers/komb |
shpc-registry automated BioContainers addition for komb |
Bifrost, abyss-db-csv, komb, abyss-bloom-dbg, abyss-bloom-dist.mk.Makefile, abyss-db-txt, abyss-dida, abyss-paired-dbg, abyss-paired-dbg-mpi, abyss-pe.Makefile, abyss-sealer, ABYSS, ABYSS-P |
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GITHUB
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quay.io/biocontainers/konezumiaid |
singularity registry hpc automated addition for konezumiaid |
konezumiaid, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, 2to3-3.12, idle3.12 |
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GITHUB
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quay.io/biocontainers/kopt |
shpc-registry automated BioContainers addition for kopt |
hyperopt-mongo-worker, theano-cache, theano-nose, freeze_graph, mako-render, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard |
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GITHUB
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quay.io/biocontainers/kounta |
shpc-registry automated BioContainers addition for kounta |
kounta, kmc, kmc_dump, kmc_tools, basenc, b2sum, base32, base64, basename, cat, chcon |
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GITHUB
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quay.io/biocontainers/koverage |
singularity registry hpc automated addition for koverage |
cmtime, eido, elastipubsub5, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, io_demo, koverage, mckey, mqtt5_app, mqtt5_canary, mqtt5canary, protoc-23.4.0, py-spy, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, ucmatose, ucx_info, ucx_perftest, ucx_read_profile, udaddy, udpong, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, markdown-it, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, stone, yte, jupyter-kernel, jupyter-kernelspec, jupyter-run, plac_runner.py, docutils, curve_keygen, pulptest, ipython3 |
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GITHUB
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quay.io/biocontainers/kpal |
shpc-registry automated BioContainers addition for kpal |
kpal, futurize, pasteurize, f2py3.8, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++ |
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GITHUB
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quay.io/biocontainers/kpop |
singularity registry hpc automated addition for kpop |
KPopCount, KPopCountDB, KPopTwist, KPopTwistDB, KPopTwist_, pcre2posix_test, hb-info, tjbench |
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GITHUB
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quay.io/biocontainers/kraken-biom |
shpc-registry automated BioContainers addition for kraken-biom |
kraken-biom, biom, futurize, pasteurize, f2py3.10, h5clear, h5format_convert, h5watch, h5fc, 2to3-3.10, idle3.10 |
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GITHUB
|
quay.io/biocontainers/kraken-ea |
shpc-registry automated BioContainers addition for kraken-ea |
kraken, kraken-build, kraken-filter, kraken-mpa-report, kraken-report, kraken-translate, jellyfish, perl5.26.2, podselect |
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GITHUB
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quay.io/biocontainers/kraken |
shpc-registry automated BioContainers addition for kraken |
|
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GITHUB
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quay.io/biocontainers/kraken2 |
shpc-registry automated BioContainers addition for kraken2 |
kraken2, kraken2-build, kraken2-inspect, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, tar, edirect.py, filter-columns, fuse-segments |
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GITHUB
|
quay.io/biocontainers/krakenhll |
shpc-registry automated BioContainers addition for krakenhll |
build_taxdb, krakenhll, krakenhll-build, krakenhll-download, krakenhll-extract-reads, krakenhll-filter, krakenhll-mpa-report, krakenhll-report, krakenhll-translate, read_merger.pl, jellyfish, perl5.22.0, c2ph, pstruct, lwp-download, lwp-dump, lwp-mirror, lwp-request, perl5.26.2, podselect |
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GITHUB
|
quay.io/biocontainers/krakentools |
shpc-registry automated BioContainers addition for krakentools |
alpha_diversity.py, beta_diversity.py, combine_kreports.py, combine_mpa.py, extract_kraken_reads.py, filter_bracken.out.py, fix_unmapped.py, kreport2krona.py, kreport2mpa.py, make_kreport.py, make_ktaxonomy.py, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
|
quay.io/biocontainers/krakenuniq |
shpc-registry automated BioContainers addition for krakenuniq |
build_taxdb, krakenuniq, krakenuniq-build, krakenuniq-download, krakenuniq-extract-reads, krakenuniq-filter, krakenuniq-mpa-report, krakenuniq-report, krakenuniq-translate, read_merger.pl, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, tar, jellyfish, idn2, lwp-download |
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GITHUB
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quay.io/biocontainers/krakmeopen |
shpc-registry automated BioContainers addition for krakmeopen |
krakmeopen, stringmeup, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
|
quay.io/biocontainers/krbalancing |
shpc-registry automated BioContainers addition for krbalancing |
pybind11-config, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/krocus |
shpc-registry automated BioContainers addition for krocus |
krocus, krocus_database_downloader, fastaq, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/krona |
shpc-registry automated BioContainers addition for krona |
ktClassifyHits, ktImportHits, ktImportKrona, ktClassifyBLAST, ktGetContigMagnitudes, ktGetLCA, ktGetLibPath, ktGetTaxIDFromAcc, ktGetTaxInfo, ktImportBLAST, ktImportDiskUsage, ktImportEC, ktImportFCP |
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GITHUB
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quay.io/biocontainers/kronik |
shpc-registry automated BioContainers addition for kronik |
kronik |
|
GITHUB
|
quay.io/biocontainers/kronos |
shpc-registry automated BioContainers addition for kronos |
kronos, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
|
quay.io/biocontainers/kseqpp |
singularity registry hpc automated addition for kseqpp |
|
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GITHUB
|
quay.io/biocontainers/ksnp |
singularity registry hpc automated addition for ksnp |
ksnp, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/kssd |
shpc-registry automated BioContainers addition for kssd |
kssd |
|
GITHUB
|
quay.io/biocontainers/ksw |
shpc-registry automated BioContainers addition for ksw |
ksw |
|
GITHUB
|
quay.io/biocontainers/kwip |
shpc-registry automated BioContainers addition for kwip |
abundance-dist-single.py, abundance-dist.py, annotate-partitions.py, count-median.py, do-partition.py, extract-long-sequences.py, extract-paired-reads.py, extract-partitions.py, fastq-to-fasta.py, filter-abund-single.py, filter-abund.py, filter-stoptags.py, find-knots.py, interleave-reads.py, kwip, kwip-stats, load-graph.py, load-into-counting.py, make-initial-stoptags.py, merge-partitions.py, normalize-by-median.py, partition-graph.py, readstats.py, sample-reads-randomly.py, split-paired-reads.py, trim-low-abund.py, unique-kmers.py, screed, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/kyototycoon |
shpc-registry automated BioContainers addition for kyototycoon |
kccachetest, kcdirmgr, kcdirtest, kcforestmgr, kcforesttest, kcgrasstest, kchashmgr, kchashtest, kclangctest, kcpolymgr, kcpolytest, kcprototest, kcstashtest, kctreemgr, kctreetest, kcutilmgr, kcutiltest, ktremotemgr, ktremotetest, ktserver, kttimedmgr, kttimedtest, ktutilmgr, ktutilserv, ktutiltest |
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GITHUB
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quay.io/biocontainers/labrat |
shpc-registry automated BioContainers addition for labrat |
LABRAT.py, LABRAT_danRer.py, LABRAT_dm6annotation.py, LABRAT_rn6annotation.py, LABRATsc.py, salmon, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, faidx, f2py3.9, 2to3-3.9, idle3.9 |
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GITHUB
|
quay.io/biocontainers/lace |
shpc-registry automated BioContainers addition for lace |
BuildSuperTranscript, Lace, Lace_Checker, Mobius, Mobius-as, STViewer, blat, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
|
quay.io/biocontainers/lamassemble |
shpc-registry automated BioContainers addition for lamassemble |
fastq-interleave, lamassemble, last-dotplot, last-map-probs, last-merge-batches, last-pair-probs, last-postmask, last-split, last-split8, last-train, lastal, lastal8, lastdb, lastdb8, maf-convert, maf-cut, maf-join, maf-sort, maf-swap, parallel-fasta, parallel-fastq, parsort, mafft-sparsecore.rb, perl5.32.0, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi |
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GITHUB
|
quay.io/biocontainers/lambda |
shpc-registry automated BioContainers addition for lambda |
lambda2 |
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GITHUB
|
quay.io/biocontainers/lamps |
singularity registry hpc automated addition for lamps |
android_deploy.py, androiddeployqt6, assistant6, deploy.py, designer6, lamp, ldapadd, ldapcompare, ldapdelete, ldapexop, ldapmodify, ldapmodrdn, ldappasswd, ldapsearch, ldapurl, ldapvc, ldapwhoami, linguist6, metaobjectdump.py, pixeltool6, project.py, pyside6-rcc, pyside6-uic, qdbus6, qdbusviewer6, qdistancefieldgenerator6, qdoc6, qmake6, qml.py, qml6, qmleasing6, qmlls6, qmlpreview6, qmlscene6, qt6.conf, qtdiag6, qtplugininfo6, qtpy2cpp.py, requirements-android.txt, shiboken6, shiboken_tool.py, wayland-scanner, idle3.13, pydoc3.13, python3.13, python3.13-config, runxlrd.py, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, xkbcli, pg_config, natsort, cups-config, ippeveprinter, ipptool, dbus-cleanup-sockets, dbus-daemon, dbus-launch, dbus-monitor, dbus-run-session, dbus-send, dbus-test-tool |
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GITHUB
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quay.io/biocontainers/lap |
shpc-registry automated BioContainers addition for lap |
SeqIO.py, calc_prob.py, gen_rand_samp.py, mean, mprobability, probability, stitch, sum_prob.py, sample, easy_install-2.7, perl5.22.0, c2ph, pstruct, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l |
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GITHUB
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quay.io/biocontainers/lastz |
shpc-registry automated BioContainers addition for lastz |
lastz, lastz_32, lastz_D |
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GITHUB
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quay.io/biocontainers/latch |
singularity registry hpc automated addition for latch |
apython, aws, aws.cmd, aws_bash_completer, aws_completer, aws_zsh_completer.sh, cookiecutter, entrypoint.py, flyte-cli, flytekit_build_image.sh, flytekit_venv, gql-cli, keyring, latch, publish.py, pyflyte, pyflyte-execute, pyflyte-fast-execute, pyflyte-map-execute, slugify, watchfiles, wsdump, unidecode, csv-import, orc-memory, orc-scan, timezone-dump, plasma-store-server, plasma_store, sha256_profile, orc-contents, orc-metadata, orc-statistics, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, jp.py, natsort, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub |
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GITHUB
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quay.io/biocontainers/latentstrainanalysis |
shpc-registry automated BioContainers addition for latentstrainanalysis |
HashCounting.sh, KmerSVDClustering.sh, ReadPartitioning.sh, pyro4-check-config, pyro4-flameserver, pyro4-httpgateway, pyro4-ns, pyro4-nsc, pyro4-test-echoserver, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier |
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GITHUB
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quay.io/biocontainers/lca |
shpc-registry automated BioContainers addition for lca |
LCA |
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GITHUB
|
quay.io/biocontainers/lcfit |
shpc-registry automated BioContainers addition for lcfit |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/lcr_genie |
singularity registry hpc automated addition for lcr_genie |
csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, normalizer, xslt-config, xsltproc, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/ldblockshow |
shpc-registry automated BioContainers addition for ldblockshow |
LDBlockShow, ShowLDSVG, plink, perl5.32.1, streamzip |
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GITHUB
|
quay.io/biocontainers/lddt |
shpc-registry automated BioContainers addition for lddt |
lddt |
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GITHUB
|
quay.io/biocontainers/ldhelmet |
shpc-registry automated BioContainers addition for ldhelmet |
ldhelmet |
|
GITHUB
|
quay.io/biocontainers/ldsc |
shpc-registry automated BioContainers addition for ldsc |
ldsc.py, munge_sumstats.py, f2py2, f2py2.7, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam |
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GITHUB
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quay.io/biocontainers/learnmsa |
singularity registry hpc automated addition for learnmsa |
attr, balsam, dumpsexp, flatc, getfattr, gpg-error, gpgrt-config, hmac256, import_pb_to_tensorboard, jackd, lame, learnMSA, libgcrypt-config, lprodump, lrelease-pro, lupdate-pro, meshdebug, mpg123, mpg123-id3dump, mpg123-strip, mpicalc, orc-bugreport, orcc, out123, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tjbench, tracegen, yat2m, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, aec, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2, tflite_convert, saved_model_cli |
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GITHUB
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quay.io/biocontainers/leehom |
shpc-registry automated BioContainers addition for leehom |
leeHom, bamtools, htsfile, bgzip, tabix |
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GITHUB
|
quay.io/biocontainers/lefse |
shpc-registry automated BioContainers addition for lefse |
lefse2circlader.py, lefse_format_input.py, lefse_plot_cladogram.py, lefse_plot_features.py, lefse_plot_res.py, lefse_run.py, qiime2lefse.py, biom, mirror_server, mirror_server_stop, futurize, pasteurize, f2py3.9, opj_compress, opj_decompress, opj_dump, h5clear |
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GITHUB
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quay.io/biocontainers/legsta |
shpc-registry automated BioContainers addition for legsta |
gfPcr, gfServer, isPcr, legsta, any2fasta, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/lemon |
shpc-registry automated BioContainers addition for lemon |
|
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GITHUB
|
quay.io/biocontainers/lemur |
singularity registry hpc automated addition for lemur |
lemur, sdust, k8, paftools.js, minimap2, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/leptonica |
shpc-registry automated BioContainers addition for leptonica |
convertfilestopdf, convertfilestops, convertformat, convertsegfilestopdf, convertsegfilestops, converttopdf, converttops, fileinfo, printimage, printsplitimage, printtiff, splitimage2pdf, xtractprotos |
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GITHUB
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quay.io/biocontainers/lepwrap |
singularity registry hpc automated addition for lepwrap |
COPYING, FilterLinkageMap.r, HM_all_lastz_mThreads.pl, HM_axtChainRecipBestNet.pl, HM_axtChainRecipBestNet_fixed3.pl, LASummary.r, LASummarySexAvg.r, LGcutoff.sh, LepAnchor.smk, LepMap3.smk, LepWrap, LepWrapTrim.r, MapSummary.r, MarkerPlot.r, RecombinationSummary.r, Red, TrimCounts.r, TrimSummaryPlot.r, agplinks.awk, all_lastz.ctl, axtAndBed, axtBest, axtCalcMatrix, axtChain, axtDropOverlap, axtDropSelf, axtFilter, axtPretty, axtRecipBest, axtRescore, axtSort, axtSplitByTarget, axtSwap, axtToBed, axtToChain, axtToMaf, axtToPsl, build_agp.smk, build_fasta.smk, chainAntiRepeat, chainFilter, chainMergeSort, chainNet, chainPreNet, chainSort, chainSplit, chainStitchId, chainSwap, chainToAxt, chainToPsl, chainpaf.awk, cleanmap.awk, contigLength.awk, cutBed.awk, cutBed_fixN.awk, distances.smk, extract_markers.sh, faCat, faCount, faFilter, faFrag, faGapLocs, faGapSizes, faLowerToN, faRc, faSize, faSplit, faToNib, findFullHaplotypes.awk, generate_config.sh, generate_inputs.smk, generate_lastzctl.sh, generate_map.smk, generate_qscoremtx.sh, hic.awk, initiation.pl, iterate_js2all.sh, joinIntervals.awk, lastz, lastz_D, lavToAxt, lavToPsl, ld.awk, lepanchor_wrapper.sh, lepanchor_wrapper2.sh, lepanchor_wrapper3.sh, lepmap2allmaps, lepmap2anchor, liftover.awk, longread.awk, mafToAxt, mafToFa, mafToPsl, mafToXmfa, makeagp.awk, makeagp2.awk, makeagp_full.awk, makeagp_full2.awk, makefasta.awk, mareymaps_untrimmed.smk, mask_and_chain.smk, netChainSubset, netFilter, netSplit, netSyntenic, netToAxt, nibFrag, nibSize, normalise.awk, order.smk, paf2chain.awk, pickbed.awk, pickorientation.awk, place_orient1.smk, place_orient2.smk, place_orient3.smk, place_orient4.smk, plot_marey.R, popmap2pedigree, prepare_data.smk, propagate.awk, propagate2.awk, propagate4.awk, prox10x.awk, prune.awk, refinemap.sh, removeHaplotypes.awk, removeOverlaps.awk, reorder.smk, scoreMatrix.q, sortpaf.awk, step1.HM2, step2.HM2, transpose_tab, trim.smk, trim_edges.smk, umi.awk, usage, stone, plac_runner.py, yte, faToTwoBit, pulptest, cbc, clp, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify, import, magick, magick-script, mogrify, montage, pkg-config, pkg-config.bin, snakemake |
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GITHUB
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quay.io/biocontainers/levenshtein |
shpc-registry automated BioContainers addition for levenshtein |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/leviathan |
shpc-registry automated BioContainers addition for leviathan |
LEVIATHAN, LRez |
|
GITHUB
|
quay.io/biocontainers/leviosam |
shpc-registry automated BioContainers addition for leviosam |
leviosam, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/leviosam2 |
singularity registry hpc automated addition for leviosam2 |
leviosam2, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/lexicmap |
singularity registry hpc automated addition for lexicmap |
lexicmap |
|
GITHUB
|
quay.io/biocontainers/lexmapr |
shpc-registry automated BioContainers addition for lexmapr |
lexmapr, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, chardetect, 2to3-3.6, idle3.6, pydoc3.6, python3.6 |
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GITHUB
|
quay.io/biocontainers/liana |
singularity registry hpc automated addition for liana |
debugpy, gseapy, hypothesis, identify-cli, jlpm, jupyter-events, jupyter-lab, jupyter-labextension, jupyter-labhub, jupyter-nbclassic, jupyter-nbclassic-bundlerextension, jupyter-nbclassic-extension, jupyter-nbclassic-serverextension, jupyter-server, nodeenv, osqp_demo, osqp_tester, pre-commit, pyjson5, virtualenv, jsonpointer, jupyter-console, wsdump, runxlrd.py, send2trash, httpx, jupyter-dejavu, jupyter-execute, jupyter-bundlerextension, jupyter-nbextension, jupyter-serverextension, jupyter-notebook, jupyter-nbconvert, pybabel, jupyter-kernel, jupyter-kernelspec, jupyter-run, h5tools_test_utils, scanpy, curve_keygen, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc |
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GITHUB
|
quay.io/biocontainers/lib-pod5 |
singularity registry hpc automated addition for lib-pod5 |
numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
|
quay.io/biocontainers/libarbdb |
shpc-registry automated BioContainers addition for libarbdb |
gio-launch-desktop |
|
GITHUB
|
quay.io/biocontainers/libbambamc |
shpc-registry automated BioContainers addition for libbambamc |
|
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GITHUB
|
quay.io/biocontainers/libbigwig |
shpc-registry automated BioContainers addition for libbigwig |
|
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GITHUB
|
quay.io/biocontainers/libcifpp |
singularity registry hpc automated addition for libcifpp |
|
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GITHUB
|
quay.io/biocontainers/libdeflate |
shpc-registry automated BioContainers addition for libdeflate |
|
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GITHUB
|
quay.io/biocontainers/libdivsufsort |
shpc-registry automated BioContainers addition for libdivsufsort |
|
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GITHUB
|
quay.io/biocontainers/libgab |
shpc-registry automated BioContainers addition for libgab |
bamtools, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/libgenome |
shpc-registry automated BioContainers addition for libgenome |
|
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GITHUB
|
quay.io/biocontainers/libgff |
singularity registry hpc automated addition for libgff |
|
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GITHUB
|
quay.io/biocontainers/libgtextutils |
shpc-registry automated BioContainers addition for libgtextutils |
|
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GITHUB
|
quay.io/biocontainers/libidn |
shpc-registry automated BioContainers addition for libidn |
idn |
|
GITHUB
|
quay.io/biocontainers/libis |
shpc-registry automated BioContainers addition for libis |
LiBis, bamsort.sh, bbf, bseqc2, bseqc2mbiasplot.R, bsmap, mcall, mcomp, moabs, numCI, pefilter, preprocess_novoalign.sh, redepth.pl, routines.pm, template_for_cfg, template_for_qsub, trim_galore, cutadapt, fastqc, igzip, pigz, unpigz, idn2, shiftBed, annotateBed, bamToBed, bamToFastq |
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GITHUB
|
quay.io/biocontainers/libis_moabs |
shpc-registry automated BioContainers addition for libis_moabs |
LiBis, compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, qwebengine_convert_dict |
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GITHUB
|
quay.io/biocontainers/libmaus2 |
shpc-registry automated BioContainers addition for libmaus2 |
append_sff, convert_trace, cram_dump, cram_filter, cram_index, cram_size, extract_fastq, extract_qual, extract_seq, get_comment, hash_exp, hash_extract, hash_list, hash_sff, hash_tar, index_tar, io_lib-config, makeSCF, scf_dump, scf_info, scf_update, scram_flagstat, scram_merge, scram_pileup, scram_test, scramble, srf2fasta, srf2fastq, srf_dump_all, srf_extract_hash, srf_extract_linear, srf_filter, srf_index_hash, srf_info, srf_list, trace_dump, ztr_dump |
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GITHUB
|
quay.io/biocontainers/libmems |
shpc-registry automated BioContainers addition for libmems |
|
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GITHUB
|
quay.io/biocontainers/libmuscle |
shpc-registry automated BioContainers addition for libmuscle |
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GITHUB
|
quay.io/biocontainers/libopenms |
shpc-registry automated BioContainers addition for libopenms |
CreateDOMDocument, DOMCount, DOMPrint, EnumVal, MemParse, PParse, PSVIWriter, Redirect, SAX2Count, SAX2Print |
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GITHUB
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quay.io/biocontainers/libsbml |
shpc-registry automated BioContainers addition for libsbml |
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GITHUB
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quay.io/biocontainers/libsequence |
shpc-registry automated BioContainers addition for libsequence |
libsequenceConfig |
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GITHUB
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quay.io/biocontainers/libshorah |
singularity registry hpc automated addition for libshorah |
htsfile, bgzip, tabix, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/libssw |
shpc-registry automated BioContainers addition for libssw |
example_cpp, pyssw.py, ssw.jar, ssw_lib.py, ssw_test, jaotc, python2-config, python2.7-config, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, python2 |
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GITHUB
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quay.io/biocontainers/libstatgen |
shpc-registry automated BioContainers addition for libstatgen |
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GITHUB
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quay.io/biocontainers/liftoff |
shpc-registry automated BioContainers addition for liftoff |
liftoff, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, faidx, sdust, paftools.js, minimap2, k8 |
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GITHUB
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quay.io/biocontainers/liftofftools |
singularity registry hpc automated addition for liftofftools |
aria2c, liftofftools, nltk, mmseqs, gffutils-cli, gawk-5.1.0, vcf_sample_filter.py, vcf_filter.py, vcf_melt, awk, gawk, faidx, idn2, activate-global-python-argcomplete, fonttools, pyftmerge, pyftsubset, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, ttx, tqdm, brotli, f2py3.10, wget, opj_compress, opj_decompress, opj_dump |
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GITHUB
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quay.io/biocontainers/liftover |
singularity registry hpc automated addition for liftover |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/lightassembler |
shpc-registry automated BioContainers addition for lightassembler |
LightAssembler, libtoolize, libtool |
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GITHUB
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quay.io/biocontainers/lighter |
shpc-registry automated BioContainers addition for lighter |
lighter |
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GITHUB
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quay.io/biocontainers/lightning |
shpc-registry automated BioContainers addition for lightning |
lightning_predict, lightning_train, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/lightstringgraph |
shpc-registry automated BioContainers addition for lightstringgraph |
graph2asqg, lsg, redbuild, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/lima |
shpc-registry automated BioContainers addition for lima |
lima, lima-undo |
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GITHUB
|
quay.io/biocontainers/linearfold |
shpc-registry automated BioContainers addition for linearfold |
gflags2man.py, linearfold, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/linearpartition |
shpc-registry automated BioContainers addition for linearpartition |
draw_heatmap, gflags2man.py, linearpartition, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/linkage2allegro |
shpc-registry automated BioContainers addition for linkage2allegro |
linkage2allegro, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/links |
shpc-registry automated BioContainers addition for links |
LINKS, LINKS-make, LINKS-make-real, LINKS.pl, LINKS_CPP, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/linkstats |
singularity registry hpc automated addition for linkstats |
LinkStats, fonttools, pyftmerge, pyftsubset, ttx, tqdm, brotli, f2py3.8, opj_compress, opj_decompress, opj_dump, htsfile, bgzip, tabix, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/liqa |
singularity registry hpc automated addition for liqa |
PreProcess.pl, PreProcess_gtf.pl, group_process.pl, liqa, liqa.py, noveliso.py, testDAS.R, futurize, pasteurize, hb-info, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/liquorice |
shpc-registry automated BioContainers addition for liquorice |
LIQUORICE, LIQUORICE_summary, alignmentSieve, bamCompare, bamCoverage, bamPEFragmentSize, bigwigCompare, computeGCBias, computeMatrix, computeMatrixOperations, correctGCBias, deeptools, estimateReadFiltering, estimateScaleFactor, jupyter-dejavu, jupyter-execute, multiBamSummary, multiBigwigSummary, plotCorrelation, plotCoverage, plotEnrichment, plotFingerprint, plotHeatmap, plotPCA, plotProfile, send2trash, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, dask-scheduler, dask-ssh, dask-worker, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec |
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GITHUB
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quay.io/biocontainers/lisa2 |
singularity registry hpc automated addition for lisa2 |
lisa, mirror_server, mirror_server_stop, f2py3.9, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp, h5perf_serial, h5redeploy, h5repack, h5repart, h5stat, h5unjam, h5dump, h5cc |
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GITHUB
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quay.io/biocontainers/lissero |
shpc-registry automated BioContainers addition for lissero |
gfPcr, gfServer, isPcr, lissero, CA.pm, cacert.pem, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras, pm-collect, readme.pdf |
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GITHUB
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quay.io/biocontainers/liv_utils |
shpc-registry automated BioContainers addition for liv_utils |
filter-table, spdi2prod, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, align-columns, blst2tkns, csv2xml |
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GITHUB
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quay.io/biocontainers/livekraken |
shpc-registry automated BioContainers addition for livekraken |
livekraken, livekraken-build, livekraken-filter, livekraken-mpa-report, livekraken-report, livekraken-translate, livekraken_sankey_diagram.py, jellyfish, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/lja |
singularity registry hpc automated addition for lja |
jumboDBG, lja, run_polishing, run_tests |
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GITHUB
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quay.io/biocontainers/lmas |
singularity registry hpc automated addition for lmas |
LMAS, get_lmas_data.sh, nextflow, nextflow.bak, jpackage, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd, df, dir, dircolors, dirname, du, echo |
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GITHUB
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quay.io/biocontainers/localhgt |
singularity registry hpc automated addition for localhgt |
accurate_bkp.py, evaluation.py, extractSplitReads_BwaMem.py, extract_ref, extract_transferred_seq.py, generate_run_scripts.py, get_bed_file.py, get_raw_bkp.py, infer_HGT_breakpoint.py, infer_HGT_event.py, localhgt, localhgt.py, pipeline.sh, remove_repeat.py, simulation.py, annot-tsv, h5tools_test_utils, seqkit, biom, fastp, h5fuse.sh, h5delete, igzip, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, natsort, py.test, pytest, qualfa2fq.pl, xa2multi.pl, bwa, fasta-sanitize.pl, plot-ampliconstats, normalizer, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl |
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GITHUB
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quay.io/biocontainers/locarna |
shpc-registry automated BioContainers addition for locarna |
LocARNA_RNAz.pm, RNAz.pm, aln-seqs.pl, aln2fa.pl, alnsel.pl, average-dot.pl, benchmark-plot.R, dot2pp, exparna_p, exploc_p, gen-reliab-dot.pl, locarna, locarna-mea.pl, locarna-motif-scan, locarna_deviation, locarna_mcc, locarna_p, locarna_rnafold_pp, locarnap-predict-and-plot.pl, locarnap-realign-all.pl, locarnap-revcomp.pl, locarnap-revisit-RNAz-hits.pl, locarnap_fit, locarnate, mlocarna, mlocarna_nnames, plot-bmprobs, pp2dot, reliability-profile.pl, ribosum2cc, sparse, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold |
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GITHUB
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quay.io/biocontainers/locidex |
singularity registry hpc automated addition for locidex |
archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, archspec, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gawk-5.3.0, gawkbug, gbf2fsa, gbf2ref, gm2ranges, gm2segs, ini2xml, jsonl2xml, just-first-key, locidex, nhance.sh, pma2apa, pma2pme, pmc2bioc, pmc2info, quote-grouped-elements, ref2pmid, refseq-nm-cds, scn2xml, stream-local, test-pmc-index, toml2xml, yaml2xml, pyrodigal, cpuinfo, h5tools_test_utils, blastn_vdb, tblastn_vdb, h5fuse.sh, uuid, uuid-config, h5delete, test_pcre, pt2to3, ptdump, ptrepack, pttree, awk, gawk, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns |
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GITHUB
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quay.io/biocontainers/locityper |
singularity registry hpc automated addition for locityper |
locityper, strobealign, annot-tsv, sdust, k8, paftools.js, minimap2, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim |
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GITHUB
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quay.io/biocontainers/locus_processing |
shpc-registry automated BioContainers addition for locus_processing |
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GITHUB
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quay.io/biocontainers/lofreq |
shpc-registry automated BioContainers addition for lofreq |
lofreq, lofreq2_call_pparallel.py, lofreq2_indel_ovlp.py, lofreq2_somatic.py, lofreq2_vcfplot.py, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa |
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GITHUB
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quay.io/biocontainers/log4cpp |
shpc-registry automated BioContainers addition for log4cpp |
log4cpp-config |
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GITHUB
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quay.io/biocontainers/logbook |
shpc-registry automated BioContainers addition for logbook |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/logol |
shpc-registry automated BioContainers addition for logol |
LogolExec.sh, LogolMultiExec.sh, cassiopee, cassiopeeknife, latex2html, swipl, swipl-ld, swipl-rc, erb, gem, irb, rake, rdoc, ri, ruby, extcheck, java-rmi.cgi, javah |
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GITHUB
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quay.io/biocontainers/logomaker |
shpc-registry automated BioContainers addition for logomaker |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc, tificc |
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GITHUB
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quay.io/biocontainers/lollipop |
singularity registry hpc automated addition for lollipop |
tqdm, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/longcallr_nn |
singularity registry hpc automated addition for longcallr_nn |
longcallR_nn, torchrun, convert-caffe2-to-onnx, convert-onnx-to-caffe2, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, protoc, f2py3.9, normalizer, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/longestrunsubsequence |
shpc-registry automated BioContainers addition for longestrunsubsequence |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/longgf |
shpc-registry automated BioContainers addition for longgf |
LongGF, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/longphase |
singularity registry hpc automated addition for longphase |
longphase |
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GITHUB
|
quay.io/biocontainers/longqc |
shpc-registry automated BioContainers addition for longqc |
_version.py, longQC.py, lq_adapt.py, lq_coverage.py, lq_exec.py, lq_gamma.py, lq_gcfrac.py, lq_mask.py, lq_nanopore.py, lq_rs.py, lq_sequel.py, lq_utils.py, minimap2-coverage, mirror_server, mirror_server_stop, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.9, opj_compress, opj_decompress |
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GITHUB
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quay.io/biocontainers/longreadsum |
singularity registry hpc automated addition for longreadsum |
bam_plot.py, cli.py, entry_point.py, fast5_signal_plot.py, fasta_plot.py, generate_html.py, longreadsum, plot_utils.py, seqtxt_plot.py, tjbench, mirror_server, mirror_server_stop, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp, h5perf_serial, h5redeploy |
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GITHUB
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quay.io/biocontainers/longshot |
shpc-registry automated BioContainers addition for longshot |
longshot |
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GITHUB
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quay.io/biocontainers/longstitch |
shpc-registry automated BioContainers addition for longstitch |
LINKS, abyss-rresolver-short, abyss-stack-size, arcs, arcs-make, gunzip, gzexe, gzip, indexlr, irqtop, long-to-linked-pe, longstitch, lrunzip, lrzcat, lrzip, lrztar, lrzuntar, lsirq, nsenter, ntLink, ntLink_rounds, prlimit, scriptlive, tigmint, tigmint-arcs-tsv, tigmint-cut, tigmint-make, tigmint_estimate_dist.py, tigmint_molecule.py, tigmint_molecule_paf.py, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zmore, znew, zsh, zsh-5.8, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject |
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GITHUB
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quay.io/biocontainers/loompy |
shpc-registry automated BioContainers addition for loompy |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, h5clear, h5format_convert |
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GITHUB
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quay.io/biocontainers/lorax |
singularity registry hpc automated addition for lorax |
lorax, htsfile, bgzip, tabix |
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GITHUB
|
quay.io/biocontainers/lordec |
shpc-registry automated BioContainers addition for lordec |
dbgh5, dbginfo, leon, lordec-build-SR-graph, lordec-correct, lordec-stat, lordec-trim, lordec-trim-split, lordec_sge_slurm_wrapper.sh, f2py3.10, h5clear, h5format_convert, h5watch, h5fc, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10 |
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GITHUB
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quay.io/biocontainers/lordfast |
shpc-registry automated BioContainers addition for lordfast |
lordfast |
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GITHUB
|
quay.io/biocontainers/lorikeet-genome |
shpc-registry automated BioContainers addition for lorikeet-genome |
bwa-mem2, bwa-mem2.avx, bwa-mem2.avx2, bwa-mem2.avx512bw, bwa-mem2.sse41, bwa-mem2.sse42, dashing, lorikeet, ngmlr, starcode, svim, vt, fastANI, dask-scheduler, dask-ssh, dask-worker, gff2gff.py, bokeh, parsort, env_parallel, env_parallel.ash |
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GITHUB
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quay.io/biocontainers/lorma |
shpc-registry automated BioContainers addition for lorma |
LoRMA, lordec-build-SR-graph, lordec-correct, lordec-stat, lordec-trim, lordec-trim-split, lorma.sh |
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GITHUB
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quay.io/biocontainers/lotus2 |
shpc-registry automated BioContainers addition for lotus2 |
ITSx, LCA, amplicon_contingency_table.py, graph_plot.py, iqtree2, lambda, lambda_indexer, lotus2, rdp_classifier, rtk, sdm, swarm, clustalo, zip, iqtree, funzip, unzipsfx, zipgrep, zipinfo, igraph, vsearch, FET.pl |
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GITHUB
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quay.io/biocontainers/lra |
shpc-registry automated BioContainers addition for lra |
lra, htsfile, bgzip, tabix |
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GITHUB
|
quay.io/biocontainers/lrez |
shpc-registry automated BioContainers addition for lrez |
LRez |
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GITHUB
|
quay.io/biocontainers/lrphase |
shpc-registry automated BioContainers addition for lrphase |
LRphase, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump |
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GITHUB
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quay.io/biocontainers/lrsim |
singularity registry hpc automated addition for lrsim |
lrsim, htsfile, bgzip, tabix |
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GITHUB
|
quay.io/biocontainers/lrtk |
singularity registry hpc automated addition for lrtk |
Aquila_assembly_based_variants_call, Aquila_clean, Aquila_phasing_all_variants, Aquila_step0_sortbam, Aquila_step0_sortbam_multilibs, Aquila_step1, Aquila_step1_multilibs, Aquila_step2, GenomeAnalysisTK, HAPCUT2, LinkFragments.py, calculate_haplotype_statistics.py, extractHAIRS, gatk-register, hapcut2, lrtk, sam_add_rg.pl, split_ref_by_bai_datasize.py, update_version.sh, whatshap, gatk, fastp, picard, tabix++, bamleftalign, bc, coverage_to_regions.py, dc, fasta_generate_regions.py, freebayes-parallel, generate_freebayes_region_scripts.sh, abba-baba, bFst, bed2region, bgziptabix, dumpContigsFromHeader, freebayes, genotypeSummary, hapLrt, iHS, meltEHH, normalize-iHS, pFst, pVst, permuteGPAT++ |
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GITHUB
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quay.io/biocontainers/lrzip |
shpc-registry automated BioContainers addition for lrzip |
lrunzip, lrzcat, lrzip, lrztar, lrzuntar |
|
GITHUB
|
quay.io/biocontainers/ls-gkm |
shpc-registry automated BioContainers addition for ls-gkm |
gkmpredict, gkmtrain |
|
GITHUB
|
quay.io/biocontainers/lsabgc |
singularity registry hpc automated addition for lsabgc |
GSeeF, HYPHYMPI, LSABGC, ZOL, abon, annotateProtSeqs.py, annotate_hits_pyseer, apos, atpoc, axel, bsmp2info, cagecatProcess.py, cgc, clusterHeatmap.R, codoff, convertMiniprotGffToGbkAndProt.py, convert_orthofinder_tree_ids.py, enet_predict_pyseer, extractBiG-SCAPEclusters.py, fai, fastgenomicsNeighborhoodToGenBanks.py, fastme, findOrthologs.py, fsa2xml, gbf2info, gecco, genbankToFasta.py, genbankToProkkaGFF.py, gimme_taxa.py, hyphy, just-top-hits, listAllGenomesInDirectory.py, lsaBGC-Cluster, lsaBGC-ComprehenSeeIve, lsaBGC-MIBiGMapper, lsaBGC-Pan, lsaBGC-Reconcile, lsaBGC-See, lsaBGC-Sociate, make_ultrametric.py, miniprot, njTree.R, orthofinder, pal2nal.pl, phandango_mapper, phyloHeatmap.R, phylogenate, plotSegments.R, plotTinyAAI.R, popstrat, prepTG, primary_transcript.py, processAndReformatUserProvidedGenbanks.py, processNCBIGenBank.py, prodigal-gv, pyseer, rcl, rcl-dot-resmap.pl, rcl-qc, rcl-qm.R, rcl-relevel.pl, rcl-select.pl, rcldo.pl, runProdigalAndMakeProperGenbank.py, runRBH, salt, salt_gc_vs_ribo_aai.R, scree_plot_pyseer, selectSpecificGeneClusters.py, setup_annotation_dbs.py, similarity_pyseer, skani, slclust, splitDiamondResults, splitDiamondResultsForFai, square_mash, sumlabels, sumtrees, systematic-mutations, torch_shm_manager, zol, archspec, ncbi-genome-download, ngd, raxml-ng, raxml-ng-mpi, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical, bam2bed_sge, bam2bed_sge-float128, bam2bed_sge-megarow, bam2bed_sge-typical, bam2bed_slurm, bam2bed_slurm-float128, bam2bed_slurm-megarow, bam2bed_slurm-typical, bam2starch |
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GITHUB
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quay.io/biocontainers/lsc |
shpc-registry automated BioContainers addition for lsc |
AlignmentBasics.py, CorrectFromMapBasics.py, FileBasics.py, NavToMapBasics.py, SamToNavBasics.py, SequenceBasics.py, SequenceCompressionBasics.py, explode_fasta.pl, fasta_to_tsv.pl, fastq_to_tsv.pl, filter_corrected_reads.py, runLSC.py, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, python2-config |
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GITHUB
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quay.io/biocontainers/lsd |
shpc-registry automated BioContainers addition for lsd |
lsd, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/ltr_finder |
shpc-registry automated BioContainers addition for ltr_finder |
check_result.pl, down_tRNA.pl, filter_rt.pl, genome_plot.pl, genome_plot2.pl, genome_plot_svg.pl, ltr_finder, psearch, bdf2gdfont.pl, bdftogd, gd2copypal, gd2togif, gd2topng, gdcmpgif, gdparttopng, gdtopng, giftogd2, pngtogd |
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GITHUB
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quay.io/biocontainers/ltr_finder_parallel |
singularity registry hpc automated addition for ltr_finder_parallel |
LTR_FINDER_parallel, check_result.pl, down_tRNA.pl, filter_rt.pl, genome_plot.pl, genome_plot2.pl, genome_plot_svg.pl, ltr_finder, psearch, bdf2gdfont.pl, bdftogd, gd2copypal, gd2togif, gd2topng, gdcmpgif, gdparttopng, gdtopng, giftogd2, pngtogd, pngtogd2, webpng, annotate, tjbench, img2webp, cwebp, dwebp, gif2webp, gif2rgb, gifbuild, gifclrmp, giffix, giftext, giftool |
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GITHUB
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quay.io/biocontainers/ltr_harvest_parallel |
singularity registry hpc automated addition for ltr_harvest_parallel |
LTR_HARVEST_parallel, genometools-config, gt, pcre2posix_test, hb-info, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/ltr_retriever |
shpc-registry automated BioContainers addition for ltr_retriever |
DateRepeats, DupMasker, LAI, LTR_retriever, ProcessRepeats, RM2Bed.py, RepeatMasker, RepeatProteinMask, buildRMLibFromEMBL.pl, buildSummary.pl, calcDivergenceFromAlign.pl, convert_MGEScan3.0.pl, convert_ltr_struc.pl, convert_ltrdetector.pl, createRepeatLandscape.pl, dupliconToSVG.pl, getRepeatMaskerBatch.pl, queryRepeatDatabase.pl, queryTaxonomyDatabase.pl, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, trfMask, wublastToCrossmatch.pl, rmblastn, trf4.10.0-rc.2.linux64.exe, trf, blast_report, blastdb_convert, blastdb_path, FET.pl, cd-hit-clstr_2_blm8.pl, certtool, clstr_list.pl |
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GITHUB
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quay.io/biocontainers/lua |
shpc-registry automated BioContainers addition for lua |
lua, luac |
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GITHUB
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quay.io/biocontainers/luciphor2 |
shpc-registry automated BioContainers addition for luciphor2 |
luciphor2, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/lukasa |
shpc-registry automated BioContainers addition for lukasa |
bagit.py, black, blackd, catchr.pl, corepack, cwl-cite-extract, cwl-docker-extract, cwl-explode, cwl-expression-refactor, cwl-format, cwl-graph-split, cwl-normalizer, cwl-upgrader, lukasa.py, makblk.pl, makdbs, makeidx.pl, makmdm, metaeuk, node, npm, npx, prov-compare, prov-convert, sortgrcd, spaln, spspaln.pl, cwltool, schema-salad-doc, schema-salad-tool, x86_64-conda_cos7-linux-gnu-ld, xml2-config.bak, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot |
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GITHUB
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quay.io/biocontainers/lumpy-sv-minimal |
shpc-registry automated BioContainers addition for lumpy-sv-minimal |
lumpy, lumpy_filter, lumpyexpress, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/lumpy-sv |
shpc-registry automated BioContainers addition for lumpy-sv |
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GITHUB
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quay.io/biocontainers/lusstr |
shpc-registry automated BioContainers addition for lusstr |
lusstr, runxlrd.py, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/lxml |
singularity registry hpc automated addition for lxml |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, xslt-config, xsltproc, python3.1 |
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GITHUB
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quay.io/biocontainers/lyner |
shpc-registry automated BioContainers addition for lyner |
lyner, theano-cache, theano-nose, estimator_ckpt_converter, mako-render, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py |
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GITHUB
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quay.io/biocontainers/lz-ani |
singularity registry hpc automated addition for lz-ani |
lz-ani |
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GITHUB
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quay.io/biocontainers/m-party |
singularity registry hpc automated addition for m-party |
CDHIT_parser.py, CDHIT_seq_download.py, DrawGram.jar, DrawTree.jar, TMalign, TMscore, UPIMAPI_parser.py, add_cluster_per_thresh.py, bstats, bundle, bundler, clique, comppair, consense, contml, contrast, conus_compare, conus_train, dca, dialign-tx, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, docker_run.py, dollop, dolmove, dolpenny, drawgram, drawgram_gui, drawtree, drawtree_gui, dunamai, fakealigner, faketree, fasttreeMP, firefox, fitch, geckodriver, gendist, hmm_process.py, hmm_vali.py, hmmeralign, hmmerbuild, hmmsearch_run.py, hyperopt-mongo-worker, kalign, kitsch, m-party, make_pscores.pl, matplotlib, mix, move, mustang, neighbor, opal.jar, pModel, padaligner, pars, penny, phylip, poa, probcons, probconsRNA, proml, promlk, protdist, protpars, racc, randtree, raxml, raxmlp, rbs, rdbg, restdist, restml, retree, run_pasta.py, run_pasta_gui.py, run_seqtools.py, sap, scalar, scompare, seq_download.py, seqboot, sfold, snakemake_util.py, strain_ml, t_coffee_run.py, treedist, typeprof, upimapi.py, clustalo, gdbm_dump, gdbm_load, gdbmtool, prank, stone, plac_runner.py, yte, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, impala, makemat |
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GITHUB
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quay.io/biocontainers/m6anet |
singularity registry hpc automated addition for m6anet |
m6anet, m6anet-compute_norm_factors, m6anet-dataprep, m6anet-run_inference, m6anet-train, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, futurize, pasteurize, f2py3.8, tqdm, normalizer, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/ma |
shpc-registry automated BioContainers addition for ma |
lzma, lzmadec, lzmainfo, maCMD, unlzma, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/maaslin |
shpc-registry automated BioContainers addition for maaslin |
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GITHUB
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quay.io/biocontainers/maaslin2 |
shpc-registry automated BioContainers addition for maaslin2 |
Maaslin2.R, fit.R, utility_scripts.R, viz.R, gio-launch-desktop, c89, c99 |
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GITHUB
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quay.io/biocontainers/maast |
singularity registry hpc automated addition for maast |
lbunzip2, lbzcat, lbzip2, maast, delta2vcf, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, FastTreeMP, FastTree, fasttree, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot, nucmer, promer, repeat-match, show-aligns, show-coords, show-diff, show-snps, show-tiling, pigz, unpigz |
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GITHUB
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quay.io/biocontainers/macaron |
shpc-registry automated BioContainers addition for macaron |
MACARON, MACARON_validate, gatk, snpEff, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
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GITHUB
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quay.io/biocontainers/mace |
shpc-registry automated BioContainers addition for mace |
mace.py, preprocessor.py, wigToBigWig, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py |
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GITHUB
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quay.io/biocontainers/machina |
shpc-registry automated BioContainers addition for machina |
dimacs-solver, dimacs-to-lgf, generatemigrationtrees, generatemutationtrees, lemon-0.x-to-1.x.sh, lgf-gen, ms, pmh, pmh_sankoff, pmh_ti, pmh_tr, visualizeclonetree, visualizemigrationgraph, cbc, clp, glpsol, cluster |
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GITHUB
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quay.io/biocontainers/macrel |
shpc-registry automated BioContainers addition for macrel |
macrel, ngless, paladin, pyrodigal, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, megahit, megahit_toolkit, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9 |
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GITHUB
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quay.io/biocontainers/macs2 |
shpc-registry automated BioContainers addition for macs2 |
macs2, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/macs3 |
singularity registry hpc automated addition for macs3 |
macs3, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/macse |
shpc-registry automated BioContainers addition for macse |
macse, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/macsyfinder |
singularity registry hpc automated addition for macsyfinder |
macsyconfig, macsydata, macsyfinder, macsymerge, macsyprofile, macsysplit, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn, esl-seqrange, esl-seqstat, esl-sfetch, esl-shuffle, esl-ssdraw, esl-translate, esl-weight, esl-afetch, esl-reformat |
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GITHUB
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quay.io/biocontainers/maegatk |
singularity registry hpc automated addition for maegatk |
annot-tsv, fgbio, maegatk, vcfnullgenofields, vcfwave, split_ref_by_bai_datasize.py, sam_add_rg.pl, update_version.sh, jwebserver, tabix++, bamleftalign, coverage_to_regions.py, fasta_generate_regions.py, freebayes-parallel, generate_freebayes_region_scripts.sh, freebayes, abba-baba, bFst, bed2region, bgziptabix, dumpContigsFromHeader, genotypeSummary, hapLrt, iHS, meltEHH, normalize-iHS, pFst, pVst, permuteGPAT++, permuteSmooth |
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GITHUB
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quay.io/biocontainers/maelstrom-core |
singularity registry hpc automated addition for maelstrom-core |
maelstrom-core |
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GITHUB
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quay.io/biocontainers/maf2synteny |
shpc-registry automated BioContainers addition for maf2synteny |
maf2synteny |
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GITHUB
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quay.io/biocontainers/mafft |
shpc-registry automated BioContainers addition for mafft |
mafft, mafft-distance, mafft-einsi, mafft-fftns, mafft-fftnsi, mafft-ginsi, mafft-homologs.rb, mafft-linsi, mafft-nwns, mafft-nwnsi, mafft-profile, mafft-qinsi, mafft-sparsecore.rb, mafft-xinsi, einsi, fftns, fftnsi, ginsi, linsi, nwns, nwnsi |
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GITHUB
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quay.io/biocontainers/magcluster |
shpc-registry automated BioContainers addition for magcluster |
clinker, magcluster, prokka-make_tarball, prokka-abricate_to_fasta_db, prokka, prokka-biocyc_to_fasta_db, prokka-build_kingdom_dbs, prokka-cdd_to_hmm, prokka-clusters_to_hmm, prokka-genbank_to_fasta_db, prokka-genpept_to_fasta_db, prokka-hamap_to_hmm, prokka-tigrfams_to_hmm |
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GITHUB
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quay.io/biocontainers/mage-tab-merger |
singularity registry hpc automated addition for mage-tab-merger |
merge_baseline_configuration_xmls.py, merge_condensed_sdrfs.py, merge_data.py, merge_sdrfs.py, retrieve_data.py, chardetect, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/mageck-vispr |
shpc-registry automated BioContainers addition for mageck-vispr |
RRA, mageck, mageck-vispr, mageckGSEA, vispr, cutadapt, fastqc, x86_64-conda-linux-gnu-pkg-config, flask, pulptest, igzip, Magick++-config, MagickCore-config, MagickWand-config, animate |
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GITHUB
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quay.io/biocontainers/mageck |
shpc-registry automated BioContainers addition for mageck |
|
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GITHUB
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quay.io/biocontainers/magetab-curation-scripts |
shpc-registry automated BioContainers addition for magetab-curation-scripts |
adf_checker.pl, check_atlas_eligibility.pl, comment_out_assays.pl, crc32, dm_date, dm_zdump, gal2adf.pl, launch_tracking_daemons.pl, magetab_insert_array.pl, magetab_insert_sub.pl, nimblegen2adf.pl, pg_verify_checksums, reset_array.pl, reset_experiment.pl, single_use_tracking_daemon.pl, split_magetab.pl, validate_magetab.pl, validjson, pod_cover, pg_standby, findrule, tzselect, zdump, zic, oid2name, pg_receivewal, pg_resetwal, pg_waldump |
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GITHUB
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quay.io/biocontainers/magic-impute |
singularity registry hpc automated addition for magic-impute |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, futurize, pasteurize, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/magicblast |
shpc-registry automated BioContainers addition for magicblast |
magicblast, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides |
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GITHUB
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quay.io/biocontainers/magphi |
singularity registry hpc automated addition for magphi |
Magphi, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl, sort-table, spdi2tbl, split-at-intron, tbl2xml, transmute.Linux, xml2fsa |
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GITHUB
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quay.io/biocontainers/magpurify |
shpc-registry automated BioContainers addition for magpurify |
coverm, fastq-interleave, last-dotplot, last-map-probs, last-merge-batches, last-pair-probs, last-postmask, last-split, last-split8, last-train, lastal, lastal8, lastdb, lastdb8, maf-convert, maf-cut, maf-join, maf-sort, maf-swap, magpurify, parallel-fasta, parallel-fastq, remove_minimap2_duplicated_headers, starcode, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, parsort, fetch-extras, go.mod, go.sum, hlp-xtract.txt |
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GITHUB
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quay.io/biocontainers/magus-msa |
singularity registry hpc automated addition for magus-msa |
blastn_vdb, magus, rcl, rcl-dot-resmap.pl, rcl-qc, rcl-qm.R, rcl-relevel.pl, rcl-select.pl, rcldo.pl, tblastn_vdb, clustalo, uuid, uuid-config, clm, clxdo, mcl, mcx, mcxarray, mcxdump, mcxi, mcxload, mcxmap, mcxsubs, dendropy-format, test_pcre, FastTreeMP, FastTree, sumlabels.py, fasttree, sumtrees.py, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi |
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GITHUB
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quay.io/biocontainers/make_prg |
shpc-registry automated BioContainers addition for make_prg |
make_prg, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/makehub |
shpc-registry automated BioContainers addition for makehub |
SplicedAlignment.pm, aa2nonred.pl, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, autoRun.pathInfo, bam2wig, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, cegma2gff.pl, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, compileSpliceCands, computeFlankingRegion.pl, createAugustusJoblist.pl, del_from_prfl.pl, espoca, evalCGP.pl, eval_dualdecomp.pl, eval_multi_gtf.pl, exonerate2hints.pl, exoniphyDb2hints.pl, extractTranscriptEnds.pl, filter-ppx.pl, filterGenes.pl, filterGenesIn.pl, filterGenesIn_mRNAname.pl, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, findGffNamesInFasta.pl, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, genePredCheck, genePredToBed, genePredToBigGenePred, getAnnoFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, getSeq, gff2gbSmallDNA.pl, gff2ps_mycustom, gffGetmRNA.pl, gp2othergp.pl, gtf2aa.pl, gtf2gff.pl, gtfToGenePred, gth2gtf.pl, hal2maf_split.pl, helpMod.pm, hgGcPercent, intron2exex.pl, ixIxx, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, load2sqlitedb, lp_solve, maf2conswig.pl, makeMatchLists.pl, makeUtrTrainingSet.pl, make_hub.py, maskNregions.pl, moveParameters.pl, msa2prfl.pl, new_species.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, peptides2alternatives.pl, peptides2hints.pl, phastconsDB2hints.pl, polyA2hints.pl, prints2prfl.pl, pslMap.pl, randomSplit.pl, ratewig.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, samMap.pl, scipiogff2gff.pl, setStopCodonFreqs.pl, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, splitMfasta.pl, split_wiggle.pl, summarizeACGTcontent.pl, transMap2hints.pl, uniquePeptides.pl, utrgff2gbrowse.pl, utrrnaseq, webserver-results.body, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, yaml2gff.1.4.pl, augustus, bam2hints, etraining, fastBlockSearch, filterBam, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign, wigToBigWig |
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GITHUB
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quay.io/biocontainers/maker |
shpc-registry automated BioContainers addition for maker |
AED_cdf_generator.pl, DateRepeats, DupMasker, EukHighConfidenceFilter, PF00225_full.blocks.txt, PF00225_seed.blocks.txt, ProcessRepeats, RM2Bed.py, RepeatMasker, RepeatProteinMask, SplicedAlignment.pm, aa2nonred.pl, add_name_to_gff3.pl, aln2wig, augustify.py, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, bam2wig, bamToWig.py, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, buildRMLibFromEMBL.pl, buildSummary.pl, calcDivergenceFromAlign.pl, cdbfasta, cdbyank, cds-trainer.pl, cegma2gff.pl, cegma2zff, chado2gff3, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, compare_gff3_to_chado, compare_masking.pl, compileSpliceCands, computeFlankingRegion.pl, covels-SE, coves-SE, createAugustusJoblist.pl, createRepeatLandscape.pl, cufflinks2gff3, del_from_prfl.pl, dupliconToSVG.pl, esd2esi, eufindtRNA, evalCGP.pl, eval_dualdecomp.pl, eval_multi_gtf.pl, evaluator, evidence_modeler.pl, executeTestCGP.py, exonerate, exonerate-server, exonerate2hints.pl, exoniphyDb2hints.pl, exonpairs, extractAnno.py, extractTranscriptEnds.pl, fasta2esd, fasta2gsi, fasta2gsi.pl, fasta_merge, fasta_tool, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds, fathom, filter-ppx.pl, filterGenes.pl, filterGenesIn.pl, filterGenesIn_mRNAname.pl, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, findGffNamesInFasta.pl, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, forge, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, gcc, genbank2gsi.pl, genemark_gtf2gff3, genpept2gsi.pl, getAnnoFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, getRepeatMaskerBatch.pl, getSeq, get_loci_from_gb.pl, gff2gbSmallDNA.pl, gff2ps_mycustom, gff3_merge, gffGetmRNA.pl, gp2othergp.pl, gtf2aa.pl, gtf2gff.pl, gth2gtf.pl, hal2maf_split.pl, helpMod.pm, hmm-assembler.pl, hmm-info, ipcress, ipr_update_gff, iprscan2gff3, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, load2sqlitedb, lp_solve, maf2conswig.pl, makeMatchLists.pl, makeUtrTrainingSet.pl, maker, maker2chado, maker2eval_gtf, maker2jbrowse, maker2wap, maker2zff, maker_functional_fasta, maker_functional_gff, maker_map_ids, map2assembly, map_data_ids, map_fasta_ids, map_gff_ids, maskFile.pl, maskNregions.pl, match2gene.pl, merge_masking.pl, moveParameters.pl, msa2prfl.pl, new_species.pl, noncoding-trainer.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, patch-hmm.pl, peptides2alternatives.pl, peptides2hints.pl, phastconsDB2hints.pl, pir2gsi.pl, polyA2hints.pl, pp_simScore, prerapsearch, prints2prfl.pl, pslMap.pl, quality_filter.pl, randomSplit.pl, rapsearch, retroDB2hints.pl, rmOut2Fasta.pl, rmOutToGFF3.pl, rmRedundantHints.pl, rmToUCSCTables.pl, runAllSim4.pl, samMap.pl, scipiogff2gff.pl, setStopCodonFreqs.pl, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, snap, snoscan, snoscanA, snoscanH, snoscanY, sort-snos, sort-snos.pl, splitMfasta.pl, split_gff3, split_wiggle.pl, sstofa, stubmaker.pl, summarizeACGTcontent.pl, swiss2gsi.pl, tRNAscan-SE, tRNAscan-SE.conf, tophat2gff3, train_augustus.pl, transMap2hints.pl, trfMask, trnascan-1.4, uniquePeptides.pl, utrgff2gbrowse.pl, utrrnaseq, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, wublastToCrossmatch.pl, yaml2gff.1.4.pl, zff2genbank.pl, zff2gff3.pl, augustus, bam2hints, etraining, fastBlockSearch, filterBam, gtf2bed.pl, homGeneMapping, joingenes, pg_amcheck, prepareAlign |
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GITHUB
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quay.io/biocontainers/malder |
shpc-registry automated BioContainers addition for malder |
malder, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
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GITHUB
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quay.io/biocontainers/malt |
shpc-registry automated BioContainers addition for malt |
malt-build, malt-run, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/malva |
shpc-registry automated BioContainers addition for malva |
MALVA, malva-geno, kmc, kmc_dump, kmc_tools, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/mammal |
singularity registry hpc automated addition for mammal |
charfreq, dgpe, mammal, mammal-sigma, mult-data, mult-mix-lwt |
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GITHUB
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quay.io/biocontainers/mamotif |
shpc-registry automated BioContainers addition for mamotif |
mamotif, manorm, motifscan, tqdm, f2py3.7, chardetect, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config |
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GITHUB
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quay.io/biocontainers/mango |
shpc-registry automated BioContainers addition for mango |
adam-shell, adam-submit, adamR, beeline, beeline.cmd, docker-image-tool.sh, find-adam-assembly.sh, find-adam-egg.sh, find-adam-home, find-mango-assembly.sh, find-mango-home, find-spark-home, find-spark-home.cmd, find-spark.sh, find_adam_home.py, find_spark_home.py, load-spark-env.cmd, load-spark-env.sh, make_genome, mango-notebook, mango-submit, pyadam, pyspark, pyspark.cmd, pyspark2.cmd, run-example, run-example.cmd, spark-class, spark-class.cmd, spark-class2.cmd, spark-shell, spark-shell.cmd, spark-shell2.cmd, spark-sql, spark-sql.cmd, spark-sql2.cmd, spark-submit, spark-submit.cmd, spark-submit2.cmd, sparkR, sparkR.cmd, sparkR2.cmd, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, dask-scheduler, dask-ssh, dask-worker, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec |
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GITHUB
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quay.io/biocontainers/manorm |
shpc-registry automated BioContainers addition for manorm |
manorm, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/manormfast |
shpc-registry automated BioContainers addition for manormfast |
MAnormFast, easy_install-3.6, qhelpconverter, pylupdate5, pyrcc5, pyuic5, sip, qdoc, gst-device-monitor-1.0, gst-discoverer-1.0, gst-play-1.0 |
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GITHUB
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quay.io/biocontainers/manta |
shpc-registry automated BioContainers addition for manta |
configManta.py, convertInversion.py, denovo_scoring.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/mantis-msi |
singularity registry hpc automated addition for mantis-msi |
RepeatFinder, calculate_instability.py, defaults.py, helpers.py, kmer_count_filter.py, kmer_repeat_counter.py, mantis-msi.py, offset_finder.py, structures.py, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/mantis-msi2 |
singularity registry hpc automated addition for mantis-msi2 |
calculate_instability.py, defaults.py, helpers.py, kmer_count_filter.py, kmer_repeat_counter.py, mantis-msi2, mantis-msi2-repeat-finder, offset_finder.py, structures.py, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/mantis |
shpc-registry automated BioContainers addition for mantis |
mantis |
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GITHUB
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quay.io/biocontainers/mantis_pfa |
singularity registry hpc automated addition for mantis_pfa |
mantis, nltk, diamond, cygdb, cython, cythonize, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn, esl-seqrange, esl-seqstat, esl-sfetch, esl-shuffle, esl-ssdraw |
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GITHUB
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quay.io/biocontainers/mapad |
singularity registry hpc automated addition for mapad |
mapad |
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GITHUB
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quay.io/biocontainers/mapcaller |
shpc-registry automated BioContainers addition for mapcaller |
MapCaller, bwt_index, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/mapdamage2 |
shpc-registry automated BioContainers addition for mapdamage2 |
mapDamage, seqtk, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, gio-launch-desktop |
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GITHUB
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quay.io/biocontainers/mapdia |
shpc-registry automated BioContainers addition for mapdia |
mapDIA |
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GITHUB
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quay.io/biocontainers/mapgl |
shpc-registry automated BioContainers addition for mapgl |
mapGL.py, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
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GITHUB
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quay.io/biocontainers/mapping-iterative-assembler |
shpc-registry automated BioContainers addition for mapping-iterative-assembler |
ccheck, ma, mia |
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GITHUB
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quay.io/biocontainers/mappy |
shpc-registry automated BioContainers addition for mappy |
minimap2.py, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config |
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GITHUB
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quay.io/biocontainers/mapsembler2 |
shpc-registry automated BioContainers addition for mapsembler2 |
kissreads, kissreads_graph, mapsembler2_extend, mapsembler2_extremities, run_mapsembler2_pipeline.sh |
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GITHUB
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quay.io/biocontainers/mapseq |
shpc-registry automated BioContainers addition for mapseq |
esh, eutils-config, mapseq |
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GITHUB
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quay.io/biocontainers/mapsplice |
shpc-registry automated BioContainers addition for mapsplice |
AddFusionStrandConsistent, Convert2FusionAlignment, DNA2StdRegion, FilterFusionAlignmentsByFilteredFusions, FilterFusionByNormalPaired, MPSSam2fq, RemovePairNo, SepSam, SepSamUnmapped, SeparateNormalFromFusionJunc, SetUnmappedBitFlag, alignment_handler, alignment_handler_multi, bsb4, check_index_consistency, check_reads_format, collectstats, comp_fusiondb_offset, filter_1hits, filterjuncbyROCarguNonCanonical, filteroriginalfusion, filterremappedfusion, find_mate_sam_fq, fusionsam2junc_filteranchor_newfmt, generate_combined_sequence, generate_fusiongene_convert_coordinate_trim, generate_fusiongene_convert_coordinate_trim_dRanger, gtf2genetab, junc2bed, junc_db, junc_db_fusion, load_fusion_chrom_seq_std, mapsplice.py, mapsplice_multi_thread, matchfusion2normal, newsam2junc, parseCluster, read_chromo_size, reads2unmappedsam, recover_fusion_alignments_order, sam2fq, search_fusion_gene, search_unmapped_reads, sepMPSfusion, sepdRangerfusion, swap_dRanger_and_MPS_matched, bowtie, bowtie-build, bowtie-inspect, cluster, python2-config, python2.7-config, python2, python2.7, idle, python-config |
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GITHUB
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quay.io/biocontainers/mapula |
shpc-registry automated BioContainers addition for mapula |
aplanat, font-awesome-to-png, icon-font-to-png, mapula, bokeh, markdown_py, tqdm, chardetect, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9 |
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GITHUB
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quay.io/biocontainers/marge |
shpc-registry automated BioContainers addition for marge |
bedClip, bigWigAverageOverBed, bigWigSummary, bigWigToBedGraph, marge, pt2to3, ptdump, ptrepack, pttree, snakemake, snakemake-bash-completion, my_print_defaults, mysql_config, perror, rst2html4.py |
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GITHUB
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quay.io/biocontainers/mark-nonconverted-reads |
shpc-registry automated BioContainers addition for mark-nonconverted-reads |
mark-nonconverted-reads.py, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, 2to3-3.7, idle3.7, pydoc3.7 |
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GITHUB
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quay.io/biocontainers/marker-magu |
singularity registry hpc automated addition for marker-magu |
bwa-mem2, bwa-mem2.avx, bwa-mem2.avx2, bwa-mem2.avx512bw, bwa-mem2.sse41, bwa-mem2.sse42, coverm, dashing, markermagu, remove_minimap2_duplicated_headers, starcode, fastANI, seqkit, fastp, igzip, basenc, b2sum, ls, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd, df |
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GITHUB
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quay.io/biocontainers/markermag |
singularity registry hpc automated addition for markermag |
MarkerMAG, barrnap, cds-mapping-stats, cds-subgraphs, mag-improve, spades-convert-bin-to-fasta, spades-gsimplifier, spades-kmer-estimating, spades-read-filter, spaligner, spades-bwa, spades-core, spades-corrector-core, spades-gbuilder, spades-gmapper, spades-hammer, spades-ionhammer, spades-kmercount, spades-truseq-scfcorrection, metaspades.py, plasmidspades.py, rnaspades.py, spades.py, spades_init.py, truspades.py, seqtk |
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GITHUB
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quay.io/biocontainers/markov_clustering |
shpc-registry automated BioContainers addition for markov_clustering |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/mars |
shpc-registry automated BioContainers addition for mars |
MARS_step1, MARS_step2, sdust, paftools.js, minimap2, k8, fasta-sanitize.pl, plot-ampliconstats, f2py3.9, ace2sam, blast2sam.pl, bowtie2sam.pl |
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GITHUB
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quay.io/biocontainers/marti |
singularity registry hpc automated addition for marti |
blastn_vdb, corepack, jwebserver, marti, marti_gui, tblastn_vdb, npx, node, npm, test_pcre, jpackage, hb-info, cups-config, ippeveprinter, ipptool, tjbench, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi |
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GITHUB
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quay.io/biocontainers/marvd2 |
singularity registry hpc automated addition for marvd2 |
MArVD2.py, aria2c, attr, balsam, dask, dumpsexp, getfattr, gpg-error, gpg-error-config, gpgrt-config, hmac256, ipython3.9, jackd, lame, libgcrypt-config, lprodump, lrelease-pro, lupdate-pro, meshdebug, mpg123, mpg123-id3dump, mpg123-strip, mpicalc, orc-bugreport, orcc, out123, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, yat2m, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, mmseqs, dask-scheduler, dask-ssh, dask-worker, ete3, jupyter-kernel, jupyter-kernelspec, jupyter-run, bokeh, gawk-5.1.0, curve_keygen, xkbcli, awk |
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GITHUB
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quay.io/biocontainers/marvel |
shpc-registry automated BioContainers addition for marvel |
download_and_set_models.py, marvel, marvel_prokka, prokka-make_tarball, prokka, prokka-biocyc_to_fasta_db, prokka-build_kingdom_dbs, prokka-cdd_to_hmm, prokka-clusters_to_hmm, prokka-genbank_to_fasta_db, prokka-genpept_to_fasta_db, prokka-hamap_to_hmm, prokka-tigrfams_to_hmm, prokka-uniprot_to_fasta_db |
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GITHUB
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quay.io/biocontainers/mash |
shpc-registry automated BioContainers addition for mash |
mash, capnp, capnpc, capnpc-c++, capnpc-capnp |
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GITHUB
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quay.io/biocontainers/mashmap |
shpc-registry automated BioContainers addition for mashmap |
mashmap, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/mashpit |
singularity registry hpc automated addition for mashpit |
abi-dump.2.11.0, abi-load, abi-load.2, abi-load.2.11.0, align-cache.2.11.0, align-info.2.11.0, bam-load.2.11.0, cache-mgr.2.11.0, ccextract, ccextract.2, ccextract.2.11.0, cg-load.2.11.0, dotenv, fasterq-dump-orig.2.11.0, fasterq-dump.2.11.0, fastq-dump-orig.2.11.0, fastq-dump.2.11.0, fastq-load, fastq-load.2, fastq-load.2.11.0, helicos-load, helicos-load.2, helicos-load.2.11.0, illumina-dump.2.11.0, illumina-load, illumina-load.2, illumina-load.2.11.0, kar.2.11.0, kdbmeta.2.11.0, kget.2.11.0, latf-load.2.11.0, mashpit, md5cp.2.11.0, pacbio-load, pacbio-load.2, pacbio-load.2.11.0, pacbio-loadxml, pacbio-loadxml.2, pacbio-loadxml.2.11.0, prefetch-orig.2.11.0, prefetch.2.11.0, rcexplain.2.11.0, read-filter-redact.2.11.0, sam-dump-orig.2.11.0, sam-dump.2.11.0, sff-dump.2.11.0, sff-load, sff-load.2, sff-load.2.11.0, sourmash, sra-pileup-orig.2.11.0, sra-pileup.2.11.0, sra-sort-cg.2.11.0, sra-sort.2.11.0, sra-stat.2.11.0, srapath-orig.2.11.0, srapath.2.11.0, sratools.2.11.0, srf-load, srf-load.2, srf-load.2.11.0, test-sra.2.11.0, vdb-config.2.11.0, vdb-copy.2.11.0, vdb-decrypt.2.11.0, vdb-diff.2.11.0, vdb-dump-orig.2.11.0, vdb-dump.2.11.0, vdb-encrypt.2.11.0, vdb-lock.2.11.0, vdb-passwd.2.11.0, vdb-unlock.2.11.0, vdb-validate.2.11.0, align-cache.2, md5cp.2, read-filter-redact.2, sra-sort-cg.2, vdb-diff.2, align-cache, fasterq-dump-orig, fastq-dump-orig, md5cp, prefetch-orig, read-filter-redact, sam-dump-orig, sra-pileup-orig, sra-sort-cg, srapath-orig, sratools.2, vdb-diff, abi-dump.2, align-info.2, bam-load.2, cache-mgr.2, cg-load.2, fasterq-dump.2, fastq-dump.2, illumina-dump.2 |
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GITHUB
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quay.io/biocontainers/mashtree |
shpc-registry automated BioContainers addition for mashtree |
mashtree, mashtree_bootstrap.pl, mashtree_cluster.pl, mashtree_init.pl, mashtree_jackknife.pl, mashtree_wrapper_deprecated.pl, min_abundance_finder.pl, quicktree, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc |
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GITHUB
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quay.io/biocontainers/maskrc-svg |
shpc-registry automated BioContainers addition for maskrc-svg |
maskrc-svg.py, ete3, compile-et.pl, prerr.properties, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py |
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GITHUB
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quay.io/biocontainers/mason |
shpc-registry automated BioContainers addition for mason |
mason_frag_sequencing, mason_genome, mason_materializer, mason_methylation, mason_simulator, mason_splicing, mason_variator |
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GITHUB
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quay.io/biocontainers/mass2chem |
singularity registry hpc automated addition for mass2chem |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, python3.1 |
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GITHUB
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quay.io/biocontainers/massdash |
singularity registry hpc automated addition for massdash |
genl-ctrl-list, idiag-socket-details, massdash, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave, nl-link-ifindex2name, nl-link-list, nl-link-name2ifindex, nl-link-release, nl-link-set, nl-link-stats, nl-list-caches, nl-list-sockets, nl-monitor, nl-neigh-add, nl-neigh-delete, nl-neigh-list, nl-neightbl-list, nl-nh-list, nl-pktloc-lookup, nl-qdisc-add, nl-qdisc-delete, nl-qdisc-list, nl-route-add, nl-route-delete, nl-route-get, nl-route-list, nl-rule-list, nl-tctree-list, nl-util-addr, streamlit, streamlit.cmd, watchmedo, cmtime, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, mckey, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, ucmatose, udaddy, udpong, svm-predict, svm-scale, svm-train |
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GITHUB
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quay.io/biocontainers/massiveqc |
singularity registry hpc automated addition for massiveqc |
IsoDetect, MultiQC, SingleQC, atropos, detectionCall, exactSNP, extract_exons.py, extract_splice_sites.py, fastq_screen, featureCounts, flattenGTF, genRandomReads, hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, propmapped, pysradb, qualityScores, removeDup, repair, subindel, subjunc, sublong, subread-align, subread-buildindex, subread-fullscan, txUnique, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect, igzip, bamtools, pbunzip2, pbzcat, pbzip2, numba, pigz, pycc, unpigz, bdf2gdfont.pl, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s |
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GITHUB
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quay.io/biocontainers/masurca |
shpc-registry automated BioContainers addition for masurca |
MasurcaCelera.pm, MasurcaCommon.pm, MasurcaConf.pm, MasurcaPaths.pm, MasurcaSoap.pm, MasurcaSuperReads.pm, SOAPdenovo-127mer, SOAPdenovo-63mer, addSurrogatesToFrgCtgFile, addSurrogatesToFrgctg.perl, add_missing_mates.pl, add_pb_seq.pl, blast_self_alignment_filter.pl, bloom_query, break_contigs.pl, build_human_reference.sh, chromosome_scaffolder.sh, classify_reads.pl, closeGaps.oneDirectory.fromMinKmerLen.perl, closeGaps.oneDirectory.perl, closeGaps.perl, closeGapsInScaffFastaFile.perl, closeGapsLocally.perl, close_gaps.sh, close_scaffold_gaps.sh, collectReadSequencesForLocalGapClosing, compute_coverage.pl, compute_sr_cov.pl, compute_sr_cov.revisedForGCContig.pl, correct_with_k_unitigs.sh, correct_with_k_unitigs_fast.pl, createFastaSuperReadSequences, createKUnitigMaxOverlaps, createSuperReadSequenceAndPlacementFileFromCombined.perl, createSuperReadsForDirectory.perl, create_end_pairs.perl, create_end_pairs.pl, create_k_unitigs_large_k, create_k_unitigs_large_k2, create_mega_reads, create_merged_mega-reads.pl, create_merged_sequences.pl, create_sr_frg, create_sr_frg.pl, deduplicate_contigs.sh, deduplicate_unitigs.sh, delta2vcf, determineUnjoinablePacbioSubmegas.perl, eliminateBadSuperReadsUsingList, error_corrected2frg, eugene.sh, evaluate_splits.pl, expand_fastq, extendSuperReadsBasedOnUniqueExtensions, extendSuperReadsForUniqueKmerNeighbors, extractJoinableAndNextPassReadsFromJoinKUnitigs.perl, extract_chrM.sh, extract_merges.pl, extract_merges_mega-reads.pl, extract_single_best_match_coords_file.pl, extract_unique_mega-reads.pl, extract_unjoined_pairs.pl, extractreads.pl, extractreads_not.pl, fasta2frg.pl, fasta2frg_m.pl, fasta_make_Nbase_bed.pl, fastqToFasta.pl, fill_unaligned_gaps.pl, filter_alt.pl, filter_delta_file_for_qrys.pl, filter_library.sh, filter_overlap_file, filter_redundancy.pl, final_polish.sh, findGapsInCoverageOfPacbios, findMatchesBetweenKUnitigsAndReads, find_contained_reads.pl, find_repeats.pl, fix_consensus_from_vcf.pl, fix_unitigs.sh, fragScaff.pl, fragScaff.sh, getATBiasInCoverageForIllumina_v2, getEndSequencesOfContigs.perl, getGCBiasStatistics.perl, getLengthStatisticsForKUnitigsFile.perl, getMeanAndStdevByGCCount.perl, getMeanAndStdevForGapsByGapNumUsingCeleraAsmFile.perl, getMeanAndStdevForGapsByGapNumUsingCeleraTerminatorDirectory.perl, getNumBasesPerReadInFastaFile.perl, getSequenceForClosedGaps.perl, getSequenceForLocallyClosedGaps.perl, getSuperReadInsertCountsFromReadPlacementFile, getSuperReadInsertCountsFromReadPlacementFileTwoPasses, getSuperReadPlacements.perl, getUnitigTypeFromAsmFile.perl, get_super_read_sizes, get_super_read_sizes.pl, homo_trim, insert_repeats.pl, introduce_errors_fasta_file.pl, jf_aligner, joinKUnitigs_v3, join_mega_reads_trim.onepass.nomatch.pl, join_mega_reads_trim.onepass.pl, join_mega_reads_trim.onepass.ref.pl, join_mega_reads_trim.onepass.rna.pl, killBadKUnitigs, longest_path, makeAdjustmentFactorsForNumReadsForAStatBasedOnGC, makeAdjustmentFactorsForNumReadsForAStatBasedOnGC_v2, make_mate_frg.pl, make_mr_frg.pl, make_rejoin_links.pl, masurca, masurca-superreads, mega_reads_assemble_cluster.sh, mega_reads_assemble_cluster2.sh, mega_reads_assemble_polish.sh, mega_reads_assemble_ref.sh, mergeSuperReadsUniquely.pl, merge_contigs.pl, merge_coords, merge_matches_and_tile_coords_file.pl, merge_mate_pairs, merge_mega-reads.pl, merge_sequences_simple.pl, my_maker_functional_fasta, my_maker_functional_gff, outputAlekseysJellyfishReductionFile.perl, outputJoinedPairs.perl, outputRecordsNotOnList, output_reconciled_scaffolds.pl, parallel_delta-filter.sh, polca.sh, polish_with_illumina_assembly.sh, process_scaffold_gaps.pl, quorum, quorum_create_database, quorum_error_correct_reads, recompute_astat_superreads.sh, recompute_astat_superreads_CA8.sh, reconcile_alignments.sh, reconcile_consensus.pl, reconcile_matches.pl, reconciliate_mega_reads.maximal.nucmer.pl, recover_scaffolds.pl, reduce_sr, refine.sh, refine_alignments.pl, rename_filter_fastq, rename_filter_fastq.pl, resolve_trio.sh, restore_ns.pl, reverse_complement, runByDirectory, runSRCA.pl, run_ECR.sh, samToDelta, samba.sh, sample_mate_pairs.pl, sizesToScaff.pl, sorted_merge, splitFileAtNs, splitFileByPrefix.pl, splitLongKUnitigs.pl, splitScaffoldsAtNs.pl, splitScaffoldsAtNs.sh, split_long_unitigs.pl, split_matches_file.pl, split_mate_pairs, split_reads_to_join.pl, translateReduceFile.perl, translate_reduced_reads.pl, trim_by_kunitigs.pl, trim_mega_reads.pl, ufasta, egrep, fgrep, grep, freebayes, jellyfish, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer |
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GITHUB
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quay.io/biocontainers/matam |
shpc-registry automated BioContainers addition for matam |
AbundanceStats, AlignmentTools, Clustering, FrameBot, KmerFilter, ProbeMatch, ReadSeq, SeqFilters, SequenceMatch, classifier, hmmgs, index_default_ssu_rrna_db.py, indexdb_rna, ktClassifyHits, ktImportHits, matam_assembly.py, matam_compare_samples.py, matam_db_preprocessing.py, merge-paired-reads.sh, sga, sga-astat.py, sga-bam2de.pl, sga-mergeDriver.pl, sortmerna, unmerge-paired-reads.sh, ktClassifyBLAST, ktGetContigMagnitudes, ktGetLCA, ktGetLibPath, ktGetTaxIDFromAcc, ktGetTaxInfo, ktImportBLAST, ktImportDiskUsage, ktImportEC, ktImportFCP |
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GITHUB
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quay.io/biocontainers/matchms |
shpc-registry automated BioContainers addition for matchms |
numba, pycc, normalizer, xslt-config, xsltproc, chardetect, f2py3.9, opj_compress, opj_decompress, opj_dump |
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GITHUB
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quay.io/biocontainers/matchmsextras |
singularity registry hpc automated addition for matchmsextras |
community, tjbench, f2py3.11, numba, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, xslt-config, xsltproc, tqdm, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc |
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GITHUB
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quay.io/biocontainers/matchtigs |
shpc-registry automated BioContainers addition for matchtigs |
cargo, cargo-clippy, cargo-fmt, clippy-driver, matchtigs, rls, rust-demangler, rust-gdb, rust-gdbgui, rust-lldb, rustc, rustdoc, rustfmt |
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GITHUB
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quay.io/biocontainers/mathstats |
shpc-registry automated BioContainers addition for mathstats |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/matplotlib |
shpc-registry automated BioContainers addition for matplotlib |
attr, balsam, esdcompat, getfattr, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, lprodump, lrelease-pro, lupdate-pro, meshdebug, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set |
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GITHUB
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quay.io/biocontainers/mauve |
shpc-registry automated BioContainers addition for mauve |
Mauve, MauveCM, addUnalignedIntervals, alignmentProjector, backbone_global_to_local, bbAnalyze, bbFilter, coordinateTranslate, createBackboneMFA, extractBCITrees, getAlignmentWindows, getOrthologList, makeBadgerMatrix, mauveAligner, mauveStatic, mauveToXMFA, mfa2xmfa, progressiveMauve, progressiveMauveStatic, projectAndStrip, randomGeneSample, repeatoire, scoreAlignment, stripGapColumns, stripSubsetLCBs, toGrimmFormat, toMultiFastA, toRawSequence, uniqueMerCount, uniquifyTrees, xmfa2maf, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/mauvealigner |
shpc-registry automated BioContainers addition for mauvealigner |
addUnalignedIntervals, alignmentProjector, backbone_global_to_local, bbAnalyze, bbFilter, coordinateTranslate, createBackboneMFA, extractBCITrees, getAlignmentWindows, getOrthologList, makeBadgerMatrix, mauveAligner, mauveStatic, mauveToXMFA, mfa2xmfa, progressiveMauve, progressiveMauveStatic, projectAndStrip, randomGeneSample, repeatoire, scoreAlignment, stripGapColumns, stripSubsetLCBs, toGrimmFormat, toMultiFastA, toRawSequence, uniqueMerCount, uniquifyTrees, xmfa2maf |
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GITHUB
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quay.io/biocontainers/mavenn |
shpc-registry automated BioContainers addition for mavenn |
import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2 |
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GITHUB
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quay.io/biocontainers/mavis |
shpc-registry automated BioContainers addition for mavis |
calculate_ref_alt_counts, mavis, blat, geos-config, vcf_sample_filter.py, vcf_filter.py, vcf_melt, my_print_defaults, mysql_config, perror, f2py3.6, guess-ploidy.py |
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GITHUB
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quay.io/biocontainers/mawk |
shpc-registry automated BioContainers addition for mawk |
mawk |
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GITHUB
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quay.io/biocontainers/maxbin2 |
shpc-registry automated BioContainers addition for maxbin2 |
FragGeneScan, Makefile, Makefile.am, Makefile.in, aclocal.bak, autoheader.bak, autom4te.bak, automake.bak, autoreconf.bak, autoscan.bak, autoupdate.bak, bazel-scan.py, fa2fq, fa2fq.o, filter_blat, filter_blat.o, filter_contigs, filter_contigs.o, filterfa, filterfa.o, fq2fa, fq2fa.o, idba, idba.o, idba_hybrid, idba_hybrid.o, idba_tran, idba_tran.o, idba_tran_test, idba_tran_test.o, idba_ud, idba_ud.o, ifnames.bak, parallel_blat, parallel_blat.o, parallel_rna_blat, parallel_rna_blat.o, print_graph, print_graph.o, raw_n50, raw_n50.o, run-unittest.py, run_FragGeneScan.pl, run_MaxBin.pl, sample_reads, sample_reads.o, scaffold, scaffold.o, scan.py, shuffle_reads, shuffle_reads.o, sim_reads, sim_reads.o, sim_reads_tran, sim_reads_tran.o, sort_psl, sort_psl.o, sort_reads, sort_reads.o, split_fa, split_fa.o, split_fq, split_fq.o, split_scaffold, split_scaffold.o, test.o, validate_blat, validate_blat_parallel, validate_blat_parallel_local, validate_blat_parallel_rna, validate_component, validate_component.o, validate_contigs_blat, validate_contigs_blat.o, validate_contigs_mummer, validate_contigs_mummer.o, validate_mummer, validate_reads_blat, validate_reads_blat.o, validate_rna, validate_rna.o, tar, test, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l |
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GITHUB
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quay.io/biocontainers/maxentpy |
shpc-registry automated BioContainers addition for maxentpy |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/maxentscan |
shpc-registry automated BioContainers addition for maxentscan |
maxentscan_score3.pl, maxentscan_score5.pl, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/maxit |
singularity registry hpc automated addition for maxit |
generate_assembly_cif_file, maxit, process_entry |
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GITHUB
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quay.io/biocontainers/maxquant |
shpc-registry automated BioContainers addition for maxquant |
CheckDll.exe, Contents.xsd, DefaultMassCal.xsd, Devices.xsd, MSActualDefs.xsd, MSScan_XSpecific.xsd, MSTS.xsd, MSTS_XSpecific.xsd, MaxQuantCmd.exe, MaxQuantCmd.runtimeconfig.json, MaxQuantGui.exe, MaxQuantGui.exe.config, MaxQuantServer.exe, MaxQuantTask.exe, MaxQuantTaskCore.runtimeconfig.json, MqparConverter.exe, Sciex.Data.Processing.DLL, csc, csc-dim, csi, global.json, illinkanalyzer, maxquant, monograph, nunit-console, nunit-console2, nunit-console4, vbc, xgboost.lib, mono-package-runtime, sgen-grep-binprot, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr |
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GITHUB
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quay.io/biocontainers/mbg |
shpc-registry automated BioContainers addition for mbg |
MBG |
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GITHUB
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quay.io/biocontainers/mbgc |
shpc-registry automated BioContainers addition for mbgc |
mbgc |
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GITHUB
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quay.io/biocontainers/mccortex |
shpc-registry automated BioContainers addition for mccortex |
mccortex, mccortex127, mccortex31, mccortex63, mccortex95 |
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GITHUB
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quay.io/biocontainers/mcl |
shpc-registry automated BioContainers addition for mcl |
mcl, mclblastline, mclcm, mclpipeline, clm, clmformat, clxdo, mcx, mcxarray, mcxassemble, mcxdeblast, mcxdump, mcxi, mcxload |
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GITHUB
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quay.io/biocontainers/mcroni |
shpc-registry automated BioContainers addition for mcroni |
_gdlib-config, abricate, abricate-get_db, mcroni, _bdftogd, _gd2copypal, _gd2togif, _gd2topng, _gdcmpgif, _gdparttopng, _gdtopng, _giftogd2, _pngtogd, _pngtogd2 |
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GITHUB
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quay.io/biocontainers/mcross |
singularity registry hpc automated addition for mcross |
gen_word_enrich_matrix.pl, mCross.pl, mCross2logo.R, mCross2logo_ggplotversion.R, topword.R, word_enrich.pl, metadata_conda_debug.yaml, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc, bp_genbank2gff3, bp_index, bp_local_taxonomydb_query, bp_make_mrna_protein, bp_mask_by_search, bp_mrtrans, bp_mutate, bp_nexus2nh, bp_nrdb, bp_oligo_count, bp_process_gadfly, bp_process_sgd, bp_revtrans-motif, bp_search2alnblocks |
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GITHUB
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quay.io/biocontainers/md-cogent |
shpc-registry automated BioContainers addition for md-cogent |
generate_batch_cmd_for_Cogent_family_finding.py, generate_batch_cmd_for_Cogent_reconstruction.py, gff3_to_collapsed.py, process_kmer_to_graph.py, reconstruct_contig.py, run_mash.py, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng |
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GITHUB
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quay.io/biocontainers/mdanalysis |
shpc-registry automated BioContainers addition for mdanalysis |
gsd, nc3tonc4, nc4tonc3, ncinfo, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
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GITHUB
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quay.io/biocontainers/mdasim |
shpc-registry automated BioContainers addition for mdasim |
mdasim, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun |
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GITHUB
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quay.io/biocontainers/mdmcleaner |
singularity registry hpc automated addition for mdmcleaner |
f2py3.11, mdmcleaner, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, aragorn, barrnap, diamond, prodigal, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml |
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GITHUB
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quay.io/biocontainers/mdtraj |
shpc-registry automated BioContainers addition for mdtraj |
mdconvert, mdinspect, pt2to3, ptdump, ptrepack, pttree, mirror_server, mirror_server_stop, f2py3.10, h5clear, h5format_convert, h5watch |
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GITHUB
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quay.io/biocontainers/mdust |
shpc-registry automated BioContainers addition for mdust |
mdust |
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GITHUB
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quay.io/biocontainers/me-pcr |
singularity registry hpc automated addition for me-pcr |
me-PCR |
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GITHUB
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quay.io/biocontainers/mea |
shpc-registry automated BioContainers addition for mea |
mea, mea_eval, mea_mix |
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GITHUB
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quay.io/biocontainers/mechanize |
singularity registry hpc automated addition for mechanize |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/medaka |
shpc-registry automated BioContainers addition for medaka |
check_compression, compress_fast5, fast5_subset, hdf2tf.py, medaka, medaka_consensus, medaka_counts, medaka_data_path, medaka_haploid_variant, medaka_variant, medaka_version_report, mini_align, multi_to_single_fast5, single_to_multi_fast5, whatshap, minimap2.py, estimator_ckpt_converter, google-oauthlib-tool, tar, igzip, gff2gff.py, tf_upgrade_v2, tflite_convert, saved_model_cli, toco |
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GITHUB
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quay.io/biocontainers/medicc2 |
shpc-registry automated BioContainers addition for medicc2 |
farcompilestrings, farconvert, farcreate, farequal, farextract, farinfo, farisomorphic, farprintstrings, fstarcsort, fstclosure, fstcompile, fstcompose, fstcompress, fstconcat, fstconnect, fstconvert, fstdeterminize, fstdifference, fstdisambiguate, fstdraw, fstencode, fstepsnormalize, fstequal, fstequivalent, fstinfo, fstintersect, fstinvert, fstisomorphic, fstlinear, fstloglinearapply, fstmap, fstminimize, fstprint, fstproject, fstprune, fstpush, fstrandgen, fstrelabel, fstreplace, fstreverse, fstreweight, fstrmepsilon, fstshortestdistance, fstshortestpath, fstspecial, fstsymbols, fstsynchronize, fsttopsort, fstunion, medicc2, mpdtcompose, mpdtexpand, mpdtinfo, mpdtreverse, pdtcompose, pdtexpand, pdtinfo, pdtreplace, pdtreverse, pdtshortestpath, tabulate, natsort, fonttools, pyftmerge, pyftsubset, ttx, brotli, img2webp, cwebp, dwebp |
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GITHUB
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quay.io/biocontainers/medpy |
shpc-registry automated BioContainers addition for medpy |
itkTestDriver, medpy_anisotropic_diffusion.py, medpy_apparent_diffusion_coefficient.py, medpy_binary_resampling.py, medpy_convert.py, medpy_create_empty_volume_by_example.py, medpy_dicom_slices_to_volume.py, medpy_dicom_to_4D.py, medpy_diff.py, medpy_extract_contour.py, medpy_extract_min_max.py, medpy_extract_sub_volume.py, medpy_extract_sub_volume_auto.py, medpy_extract_sub_volume_by_example.py, medpy_fit_into_shape.py, medpy_gradient.py, medpy_graphcut_label.py, medpy_graphcut_label_bgreduced.py, medpy_graphcut_label_w_regional.py, medpy_graphcut_label_wsplit.py, medpy_graphcut_voxel.py, medpy_grid.py, medpy_info.py, medpy_intensity_range_standardization.py, medpy_intersection.py, medpy_join_masks.py, medpy_join_xd_to_xplus1d.py, medpy_label_count.py, medpy_label_fit_to_mask.py, medpy_label_superimposition.py, medpy_merge.py, medpy_morphology.py, medpy_resample.py, medpy_reslice_3d_to_4d.py, medpy_set_pixel_spacing.py, medpy_shrink_image.py, medpy_split_xd_to_xminus1d.py, medpy_stack_sub_volumes.py, medpy_swap_dimensions.py, medpy_watershed.py, medpy_zoom_image.py, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config |
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GITHUB
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quay.io/biocontainers/medusa-data-fusion |
shpc-registry automated BioContainers addition for medusa-data-fusion |
f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/medusa |
shpc-registry automated BioContainers addition for medusa |
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GITHUB
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quay.io/biocontainers/megadepth |
shpc-registry automated BioContainers addition for megadepth |
megadepth, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/megagta |
shpc-registry automated BioContainers addition for megagta |
hmmc2, hmmerfm-exactmatch, megagta, megagta.py, post_proc.sh, prepare_gene_ref.sh, xander_customized_hmmer_version_for_prepare_gene.sh, easy_install-2.7, alimask, hmmconvert, hmmemit, hmmfetch, hmmlogo, hmmpgmd, hmmpress, hmmscan, hmmsearch |
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GITHUB
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quay.io/biocontainers/megahit |
shpc-registry automated BioContainers addition for megahit |
megahit, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, megahit_toolkit, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/megalodon |
shpc-registry automated BioContainers addition for megalodon |
check_compression, compress_fast5, fast5_subset, megalodon, megalodon_extras, multi_to_single_fast5, single_to_multi_fast5, minimap2.py, tar, tqdm, f2py3.7, opj_compress, opj_decompress, opj_dump, 2to3-3.7, idle3.7, pydoc3.7 |
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GITHUB
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quay.io/biocontainers/megan |
shpc-registry automated BioContainers addition for megan |
MEGAN, aadder-build, aadder-run, blast2lca, blast2rma, compute-comparison, daa-meganizer, daa2info, daa2rma, extract-biome, gc-assembler, maf2daa, megan-server, read-extractor, reanalyzer, references-annotator, rma2info, sam2rma, sort-last-maf, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/megapath-nano |
singularity registry hpc automated addition for megapath-nano |
abi-dump.2.11.0, abi-load, abi-load.2, abi-load.2.11.0, align-cache.2.11.0, align-info.2.11.0, alignmentSieve, amr_report, amrfinder, amrfinder_update, bam-load.2.11.0, bamCompare, bamCoverage, bamPEFragmentSize, bigWigToBedGraph, bigwigCompare, bioawk, bioconvert, bioconvert_init, bioconvert_sniffer, bioconvert_stats, cache-mgr.2.11.0, ccextract, ccextract.2, ccextract.2.11.0, cg-load.2.11.0, computeGCBias, computeMatrix, computeMatrixOperations, correctGCBias, ct-energy, ct2rnaml, deeptools, dna_mutation, dsrc, estimateReadFiltering, estimateScaleFactor, fasta2parts, fasta_check, fasta_extract, fasterq-dump-orig.2.11.0, fasterq-dump.2.11.0, fastq-dump-orig.2.11.0, fastq-dump.2.11.0, fastq-load, fastq-load.2, fastq-load.2.11.0, gff_check, go, gofmt, h-num.pl, helicos-load, helicos-load.2, helicos-load.2.11.0, hybrid-min, hybrid-ss-min, illumina-dump.2.11.0, illumina-load, illumina-load.2, illumina-load.2.11.0, kar.2.11.0, kdbmeta.2.11.0, kget.2.11.0, kma, kma_index, kma_shm, kma_update, latf-load.2.11.0, ldc-build-runtime, ldc-profdata, ldc-prune-cache, ldc2, ldmd2, mawk, md5cp.2.11.0, megapath_nano.py, megapath_nano_amr.py, melt.pl, multiBamSummary, multiBigwigSummary, pacbio-load, pacbio-load.2, pacbio-load.2.11.0, pacbio-loadxml, pacbio-loadxml.2, pacbio-loadxml.2.11.0, plink, plotCorrelation, plotCoverage, plotEnrichment, plotFingerprint, plotHeatmap, plotPCA, plotProfile, porechop, prefetch-orig.2.11.0, prefetch.2.11.0, rcexplain.2.11.0, read-filter-redact.2.11.0, rgi, sam-dump-orig.2.11.0, sam-dump.2.11.0, sff-dump.2.11.0, sff-load, sff-load.2, sff-load.2.11.0, squizz, sra-pileup-orig.2.11.0, sra-pileup.2.11.0, sra-sort-cg.2.11.0, sra-sort.2.11.0, sra-stat.2.11.0, srapath-orig.2.11.0, srapath.2.11.0, sratools.2.11.0, srf-load, srf-load.2, srf-load.2.11.0, ss-count.pl, test-sra.2.11.0, vdb-config.2.11.0, vdb-copy.2.11.0, vdb-decrypt.2.11.0, vdb-diff.2.11.0, vdb-dump-orig.2.11.0, vdb-dump.2.11.0, vdb-encrypt.2.11.0, vdb-lock.2.11.0, vdb-passwd.2.11.0, vdb-unlock.2.11.0, vdb-validate.2.11.0, wiggletools, easydev_buildPackage, ibrowse, multigit, sambamba, align-cache.2, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical, bam2bed_sge, bam2bed_sge-float128, bam2bed_sge-megarow, bam2bed_sge-typical, bam2bed_slurm, bam2bed_slurm-float128, bam2bed_slurm-megarow, bam2bed_slurm-typical, bam2starch, bam2starch-float128, bam2starch-megarow, bam2starch-typical |
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GITHUB
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quay.io/biocontainers/megatron |
singularity registry hpc automated addition for megatron |
natsort, f2py3.9, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp, h5perf_serial, h5redeploy, h5repack, h5repart, h5stat, h5unjam, h5dump, h5cc, 2to3-3.9 |
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GITHUB
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quay.io/biocontainers/mehari |
singularity registry hpc automated addition for mehari |
mehari |
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GITHUB
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quay.io/biocontainers/melon |
singularity registry hpc automated addition for melon |
blastn_vdb, melon, tblastn_vdb, kraken2, kraken2-build, kraken2-inspect, uuid, uuid-config, seqkit, test_pcre, diamond, sdust, k8, paftools.js, minimap2, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene |
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GITHUB
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quay.io/biocontainers/melt |
shpc-registry automated BioContainers addition for melt |
Tm, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/meme |
shpc-registry automated BioContainers addition for meme |
|
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GITHUB
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quay.io/biocontainers/memote |
singularity registry hpc automated addition for memote |
cookiecutter, depinfo, memote, scalar, slugify, validate-docstrings, httpx, isympy, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, markdown-it, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, docutils, pcre2posix_test, tabulate, py.test, pytest, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py |
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GITHUB
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quay.io/biocontainers/mendelscan |
shpc-registry automated BioContainers addition for mendelscan |
mendelscan, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/meneco |
shpc-registry automated BioContainers addition for meneco |
meneco.py, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5, wish8.5 |
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GITHUB
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quay.io/biocontainers/menetools |
shpc-registry automated BioContainers addition for menetools |
menecheck, menecof, menepath, menescope, xslt-config, xsltproc, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
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quay.io/biocontainers/meningotype |
shpc-registry automated BioContainers addition for meningotype |
gfPcr, gfServer, isPcr, meningotype, mlst, bp_pairwise_kaks.pl, bp_search2BSML.pl, CA.pm, cacert.pem, index-themes, bp_aacomp.pl, bp_biofetch_genbank_proxy.pl, bp_bioflat_index.pl, bp_biogetseq.pl, bp_blast2tree.pl |
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GITHUB
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quay.io/biocontainers/mentalist |
shpc-registry automated BioContainers addition for mentalist |
MentaLiST.jl, build_db_functions.jl, calling_functions.jl, db_graph.jl, julia, julia-debug, mentalist, mlst_download_functions.jl, funzip, unzipsfx, zipgrep, zipinfo, unzip, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis |
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GITHUB
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quay.io/biocontainers/meraculous |
shpc-registry automated BioContainers addition for meraculous |
N50.pl, UnitTest_LV, _bubbleFinder2.pl, _oNo4.pl, blastMapAnalyzer2.pl, bmaToLinks.pl, bootstrap_run.sh, bubblePopper.pl, bubbleScout.pl, cluster_submit.sh, contigBias.pl, contigMerDepth_128mer, contigMerDepth_56mer, divide_it.pl, evaluate_meraculous_run.sh, fasta_splitter.pl, fasta_stats, findDMin2.pl, gapDivider.pl, gapPlacer.pl, haplotyper.Naive.pl, haplotyper.pl, histogram2.pl, isjobcomplete.sh, kmerHistAnalyzer.pl, loadBalanceMers.pl, memtime, merBlast_128mer, merBlast_56mer, merCounterTh_128mer, merCounterTh_56mer, meraculous.pl, meraculous4h.pl, meraculousTh_128mer, meraculousTh_56mer, merauder, mergeMerBlasts, mergraphTh_128mer, mergraphTh_56mer, oNo7.pl, optimize2.pl, randomList2.pl, run_meraculous.sh, scaffReportToFasta.pl, scaffold2contig.pl, screen_list2.pl, spanner.pl, splinter.pl, splinter_scaffolds.pl, split_and_validate_reads.pl, test_dependencies.pl, unique.pl, chrpath, gnuplot, l4p-tmpl, xkbcli, pg_config, dbilogstrip, dbiprof, dbiproxy, qdistancefieldgenerator, qmlpreview |
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GITHUB
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quay.io/biocontainers/mercat |
shpc-registry automated BioContainers addition for mercat |
|
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GITHUB
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quay.io/biocontainers/mercat2 |
singularity registry hpc automated addition for mercat2 |
countAssembly.py, gpustat, kaleido, mathjax-path, mercat2.py, py-spy, ray, fastp, fastqc, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, doesitcache, jpackage, igzip, ipython3, ipython, cups-config, cygdb, cython, cythonize, ippeveprinter, ipptool, py.test, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub |
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GITHUB
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quay.io/biocontainers/merfin |
singularity registry hpc automated addition for merfin |
gunzip, gzexe, gzip, merfin, meryl-analyze, meryl-import, meryl-lookup, meryl-simple, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zless, zmore, znew, meryl, pigz, unpigz |
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GITHUB
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quay.io/biocontainers/merfishtools |
shpc-registry automated BioContainers addition for merfishtools |
merfishtools, conv-template, from-template, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5 |
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GITHUB
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quay.io/biocontainers/merge-gbk-records |
singularity registry hpc automated addition for merge-gbk-records |
merge-gbk-records, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/mergenotcombined |
shpc-registry automated BioContainers addition for mergenotcombined |
mergeNotCombined |
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GITHUB
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quay.io/biocontainers/mergevcf |
shpc-registry automated BioContainers addition for mergevcf |
mergevcf, vcf_sample_filter.py, vcf_filter.py, vcf_melt, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/merlin |
shpc-registry automated BioContainers addition for merlin |
hapmapConverter, merlin, merlin-offline, merlin-regress, minx, minx-offline, pedmerge, pedstats, pedwipe |
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GITHUB
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quay.io/biocontainers/merqury |
shpc-registry automated BioContainers addition for merqury |
igvtools, merqury.sh, meryl-import, meryl-lookup, sequence, meryl, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools |
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GITHUB
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quay.io/biocontainers/merquryfk |
singularity registry hpc automated addition for merquryfk |
ASMplot, CNplot, FastK, Fastcp, Fastmerge, Fastmv, Fastrm, HAPmaker, HAPplot, Haplex, Histex, Homex, KatComp, KatGC, Logex, MerquryFK, PloidyPlot, Profex, Symmex, Tabex, Vennex, pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, tjbench |
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GITHUB
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quay.io/biocontainers/meryl |
shpc-registry automated BioContainers addition for meryl |
meryl, meryl-import, meryl-lookup, sequence |
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GITHUB
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quay.io/biocontainers/mess |
shpc-registry automated BioContainers addition for mess |
mess, pulptest, cbc, clp, snakemake, snakemake-bash-completion, jupyter-trust, jupyter, jupyter-migrate, jupyter-troubleshoot, rst2html4.py |
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GITHUB
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quay.io/biocontainers/meta-apo |
shpc-registry automated BioContainers addition for meta-apo |
meta-apo-calibrate, meta-apo-train |
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GITHUB
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quay.io/biocontainers/meta-neuro |
singularity registry hpc automated addition for meta-neuro |
asn1Coding, asn1Decoding, asn1Parser, bsdunzip, cllayerinfo, cmrep_vskel, debuginfod, debuginfod-find, deep, dipy_align_affine, dipy_align_syn, dipy_apply_transform, dipy_buan_lmm, dipy_buan_profiles, dipy_buan_shapes, dipy_bundlewarp, dipy_concatenate_tractograms, dipy_convert_tensors, dipy_convert_tractogram, dipy_correct_motion, dipy_denoise_lpca, dipy_denoise_mppca, dipy_denoise_nlmeans, dipy_denoise_patch2self, dipy_evac_plus, dipy_fetch, dipy_fit_csa, dipy_fit_csd, dipy_fit_dki, dipy_fit_dsi, dipy_fit_dti, dipy_fit_ivim, dipy_fit_mapmri, dipy_gibbs_ringing, dipy_horizon, dipy_info, dipy_labelsbundles, dipy_mask, dipy_median_otsu, dipy_recobundles, dipy_reslice, dipy_sh_convert_mrtrix, dipy_slr, dipy_snr_in_cc, dipy_split, dipy_track, dipy_track_pft, eu-addr2line, eu-ar, eu-elfclassify, eu-elfcmp, eu-elfcompress, eu-elflint, eu-findtextrel, eu-make-debug-archive, eu-nm, eu-objdump, eu-ranlib, eu-readelf, eu-size, eu-srcfiles, eu-stack, eu-strings, eu-strip, eu-unstrip, itkTestDriver, meta, meta_bundle_density, meta_segment_features, meta_streamlines_features, nib-conform, nib-convert, nib-dicomfs, nib-diff, nib-ls, nib-nifti-dx, nib-roi, nib-stats, nib-tck2trk, nib-trk2tck, p11-kit, p11tool, parrec2nii, scooby, tff_concatenate_tractograms.py, tff_convert_dsi_studio.py, tff_convert_tractogram.py, tff_generate_trx_from_scratch.py, tff_manipulate_datatype.py, tff_simple_compare.py, tff_validate_trx.py, tff_verify_header_compatibility.py, tff_visualize_overlap.py, trust, vtkParseJava-9.2, vtkProbeOpenGLVersion-9.2, vtkWrapHierarchy-9.2, vtkWrapJava-9.2, vtkWrapPython-9.2, vtkWrapPythonInit-9.2, vtklevelset, vtkpython, vpxdec, vpxenc, x265, ffmpeg, ffprobe, h264dec, h264enc, x264, SvtAv1DecApp, cpuinfo, SvtAv1EncApp, dav1d, dask, aomdec, aomenc, lsm2bin, tifffile, imageio_download_bin, imageio_remove_bin, protoc-25.3.0, skivi, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv |
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GITHUB
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quay.io/biocontainers/meta-sparse |
shpc-registry automated BioContainers addition for meta-sparse |
capnpc-cython, sparse, mash, cygdb, cython, cythonize, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s |
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GITHUB
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quay.io/biocontainers/metabat2 |
shpc-registry automated BioContainers addition for metabat2 |
aggregateBinDepths.pl, aggregateContigOverlapsByBin.pl, contigOverlaps, jgi_summarize_bam_contig_depths, merge_depths.pl, metabat, metabat1, metabat2, runMetaBat.sh, perl5.26.2, podselect, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/metabinkit |
shpc-registry automated BioContainers addition for metabinkit |
metabin, metabinkit_blast, metabinkit_blastgendb, metabinkit_shared.sh, taxonkit, taxonkit_children.sh, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides |
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GITHUB
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quay.io/biocontainers/metabinner |
shpc-registry automated BioContainers addition for metabinner |
FragGeneScan, checkm, hmmc2, hmmerfm-exactmatch, run_FragGeneScan.pl, run_metabinner.sh, rppr, guppy, pplacer, dendropy-format, sumlabels.py, sumtrees.py, prodigal, qualfa2fq.pl, xa2multi.pl, bwa |
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GITHUB
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quay.io/biocontainers/metabolabpy |
shpc-registry automated BioContainers addition for metabolabpy |
metabolabpy, pyside2-lupdate, pyside2-rcc, pyside2-uic, pyside_tool.py, shiboken2, shiboken_tool.py, vba_extract.py, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util |
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GITHUB
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quay.io/biocontainers/metabolights-utils |
singularity registry hpc automated addition for metabolights-utils |
dotenv, jsonpath.py, jsonpath_ng, mtbls, unidecode, httpx, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, jsonschema |
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GITHUB
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quay.io/biocontainers/metabuli |
singularity registry hpc automated addition for metabuli |
aria2c, metabuli, gawk-5.1.0, awk, gawk, idn2, wget |
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GITHUB
|
quay.io/biocontainers/metacache |
shpc-registry automated BioContainers addition for metacache |
download-ncbi-genomes, download-ncbi-taxmaps, download-ncbi-taxonomy, metacache, metacache-build-refseq, metacache-db-info, metacache-partition-genomes, summarize-results, gawk-5.1.0, awk, gawk, idn2, wget, python2-config, python2.7-config, python2, python2.7, idle |
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GITHUB
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quay.io/biocontainers/metacerberus-lite |
singularity registry hpc automated addition for metacerberus-lite |
archspec, countAssembly.py, flash2, gpustat, metacerberus.py, pathview-metacerberus.R, py-spy, pyrodigal-gv, ray, ray-slurm-metacerberus.sh, tune, virtualenv, protoc-25.3.0, corepack, kaleido, mathjax-path, numpy-config, pyrodigal, npx, node, npm, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, gflags_completions.sh, grpc_cpp_plugin |
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GITHUB
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quay.io/biocontainers/metacerberus |
singularity registry hpc automated addition for metacerberus |
cc, countAssembly.py, cpp, flash2, gcc, gcc-ar, gcc-nm, gcc-ranlib, gcov, gcov-dump, gcov-tool, gpustat, kaleido, mathjax-path, metacerberus.py, pathview-metacerberus.R, porechop, py-spy, ray, ray-slurm-metacerberus.sh, kmutate.sh, runhmm.sh, fastp, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, sketchblacklist2.sh, splitribo.sh, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, addssu.sh, adjusthomopolymers.sh, analyzeaccession.sh, analyzegenes.sh, applyvariants.sh, bbcms.sh |
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GITHUB
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quay.io/biocontainers/metacherchant |
shpc-registry automated BioContainers addition for metacherchant |
metacherchant.sh, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
|
quay.io/biocontainers/metachip |
shpc-registry automated BioContainers addition for metachip |
MetaCHIP, FastTree-2.1.10.c, ete3, FastTreeMP, FastTree, fasttree, xkbcli, mafft-sparsecore.rb, einsi, fftns, fftnsi |
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GITHUB
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quay.io/biocontainers/metaclassifier |
shpc-registry automated BioContainers addition for metaclassifier |
classify_reads, metaclassifier, pear, pearRM, process_reads, vsearch, seqtk, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/metaclock |
shpc-registry automated BioContainers addition for metaclock |
bo6_screen.py, breadth_depth.py, consensus.py, consensus_aDNA.py, filter.py, mapDamage, metaclock_combiner, metaclock_mac, metaclock_mac_template_configs, metaclock_tailor, metaclock_visualizer, poly.py, polymut.py, prokka-make_tarball, readal, statal, trimal, filter-table, spdi2prod, prokka, prokka-biocyc_to_fasta_db, prokka-build_kingdom_dbs, prokka-cdd_to_hmm, prokka-clusters_to_hmm |
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GITHUB
|
quay.io/biocontainers/metacluster |
shpc-registry automated BioContainers addition for metacluster |
MetaCluster4Fast, MetaCluster5_1, MetaCluster5_2 |
|
GITHUB
|
quay.io/biocontainers/metacoag |
singularity registry hpc automated addition for metacoag |
FragGeneScan, metacoag, run_FragGeneScan.pl, igraph, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis, ndmetis, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn, esl-seqrange, esl-seqstat |
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GITHUB
|
quay.io/biocontainers/metacortex |
singularity registry hpc automated addition for metacortex |
metacortex |
|
GITHUB
|
quay.io/biocontainers/metadmg |
singularity registry hpc automated addition for metadmg |
compressbam, metaDMG-cpp, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/metaeuk |
shpc-registry automated BioContainers addition for metaeuk |
metaeuk, gawk-5.1.0, awk, gawk, idn2, wget, perl5.32.1, streamzip |
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GITHUB
|
quay.io/biocontainers/metagem |
singularity registry hpc automated addition for metagem |
Makefile.am, Makefile.in, aggregateBinDepths.pl, aggregateContigOverlapsByBin.pl, autoheader.bak, autom4te.bak, autoreconf.bak, autoscan.bak, autoupdate.bak, bazel-scan.py, concoct, concoct_coverage_table.py, concoct_refine, contigOverlaps, cut_up_fasta.py, download-db.sh, extract_fasta_bins.py, fa2fq, fa2fq.o, filter_blat, filter_blat.o, filter_contigs, filter_contigs.o, filterfa, filterfa.o, fq2fa.o, git2_cli, gtdbtk, idba, idba.o, idba_hybrid, idba_hybrid.o, idba_tran, idba_tran.o, idba_tran_test, idba_tran_test.o, idba_ud, idba_ud.o, ifnames.bak, jgi_summarize_bam_contig_depths, merge_cutup_clustering.py, merge_depths.pl, metabat, metabat1, metabat2, parallel_blat, parallel_blat.o, parallel_rna_blat, parallel_rna_blat.o, print_graph, print_graph.o, raw_n50, raw_n50.o, run-unittest.py, runMetaBat.sh, run_MaxBin.pl, sample_reads, sample_reads.o, scaffold, scaffold.o, scan.py, shuffle_reads, shuffle_reads.o, sim_reads, sim_reads.o, sim_reads_tran, sim_reads_tran.o, sort_psl, sort_psl.o, sort_reads, sort_reads.o, split_fa.o, split_fq, split_fq.o, split_scaffold, split_scaffold.o, test.o, validate_blat, validate_blat_parallel, validate_blat_parallel_local, validate_blat_parallel_rna, validate_component, validate_component.o, validate_contigs_blat, validate_contigs_blat.o, validate_contigs_mummer, validate_contigs_mummer.o, validate_mummer, validate_reads_blat, validate_reads_blat.o, validate_rna, validate_rna.o, aclocal.bak, automake.bak, fq2fa, hmmc2, hmmerfm-exactmatch, split_fa, FragGeneScan, run_FragGeneScan.pl, Makefile, rppr, hwloc-gather-cpuid, nosetests-3.9, guppy, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo |
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GITHUB
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quay.io/biocontainers/metagene_annotator |
shpc-registry automated BioContainers addition for metagene_annotator |
mga |
|
GITHUB
|
quay.io/biocontainers/metagenome-atlas |
shpc-registry automated BioContainers addition for metagenome-atlas |
atlas, bsdcat, bsdcpio, bsdtar, conda2solv, cookiecutter, dumpsolv, installcheck, mamba, mamba-package, mergesolv, repo2solv, slugify, testsolv, kmutate.sh, runhmm.sh, conda-env, cph, plac_runner.py, yte, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh |
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GITHUB
|
quay.io/biocontainers/metagraph |
shpc-registry automated BioContainers addition for metagraph |
metagraph, metagraph_DNA, metagraph_Protein, jemalloc-config, jeprof, jemalloc.sh, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/metalign |
shpc-registry automated BioContainers addition for metalign |
MakeDNADatabase.py, MakeNodeGraph.py, MakeStreamingDNADatabase.py, MakeStreamingPrefilter.py, QueryDNADatabase.py, StreamingQueryDNADatabase.py, StreamingQueryDNADatabase_queue.py, abundance-dist-single.py, abundance-dist.py, annotate-partitions.py, count-median.py, do-partition.py, extract-long-sequences.py, extract-paired-reads.py, extract-partitions.py, fastq-to-fasta.py, filter-abund-single.py, filter-abund.py, filter-stoptags.py, find-knots.py, interleave-reads.py, load-graph.py, load-into-counting.py, make-initial-stoptags.py, map_and_profile.py, merge-partitions.py, metalign.py, normalize-by-median.py, partition-graph.py, readstats.py, sample-reads-randomly.py, select_db.py, split-paired-reads.py, trim-low-abund.py, unique-kmers.py, screed, kmc, kmc_dump, kmc_tools, sdust, paftools.js, minimap2, k8, f2py3.7, 2to3-3.7 |
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GITHUB
|
quay.io/biocontainers/metamaps |
shpc-registry automated BioContainers addition for metamaps |
DBinfo.pl, annotateRefSeqSequencesWithUniqueTaxonIDs.pl, benchmarkInference.pl, buildDB.pl, callCentrifugeOnConvertedDB.pl, callKraken2OnConvertedDB.pl, callKrakenOnConvertedDB.pl, combineAndAnnotateReferences.pl, convertMetaMapsToCentrifuge.pl, convertMetaMapsToKraken.pl, convertMetaMapsToMash.pl, doPlots.R, downloadRefSeq.pl, estimateSelfSimilarity.pl, firstQuartileScore.pl, fixSimulationStore.pl, geneLevelAnalysis.pl, metamaps, plotMappingSummary.R, plotUnknownResults.R, shortenContigIDs.pl, simulate.pl, test2.pl, validateDB.pl, lwp-download, lwp-dump, lwp-mirror, lwp-request, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/metamate |
singularity registry hpc automated addition for metamate |
bbcrisprfinder.sh, bbsort.sh, bloomfilterparser.sh, checkstrand.sh, copyfile.sh, countbarcodes2.sh, countduplicates.sh, filtertranslate, findrepeats.sh, gawk-5.3.0, maketree.R, metaMATE, metamate, netfilter.sh, scoresequence.sh, seqtovec.sh, train.sh, gawkbug, Xcalcmem.sh, annot-tsv, kmutate.sh, runhmm.sh, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, sketchblacklist2.sh, splitribo.sh, addssu.sh, adjusthomopolymers.sh, analyzeaccession.sh, analyzegenes.sh, applyvariants.sh, bbcms.sh, bloomfilter.sh, callgenes.sh, comparegff.sh, consensus.sh, cutgff.sh |
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GITHUB
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quay.io/biocontainers/metamdbg |
singularity registry hpc automated addition for metamdbg |
metaMDBG, wfmash, sdust, k8, paftools.js, minimap2, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim, wgsim_eval.pl, samtools, htsfile |
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GITHUB
|
quay.io/biocontainers/metameta |
shpc-registry automated BioContainers addition for metameta |
metameta, stone, snakemake, snakemake-bash-completion, rst2html4.py, f2py3.6, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py |
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GITHUB
|
quay.io/biocontainers/metametamerge |
shpc-registry automated BioContainers addition for metametamerge |
MetaMetaMerge.py, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/metamlst |
singularity registry hpc automated addition for metamlst |
breadth_depth.py, consensus.py, consensus_aDNA.py, metaMLST-DBtools.py, metaMLST_functions.py, metamlst-index.py, metamlst-merge.py, metamlst.py, mlst.py, poly.py, polymut.py, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py, bed_count_overlapping.py, bed_coverage.py, bed_coverage_by_interval.py, bed_diff_basewise_summary.py, bed_extend_to.py, bed_intersect.py, bed_intersect_basewise.py, bed_merge_overlapping.py, bed_rand_intersect.py, bed_subtract_basewise.py, bnMapper.py, div_snp_table_chr.py, find_in_sorted_file.py, gene_fourfold_sites.py, get_scores_in_intervals.py |
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GITHUB
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quay.io/biocontainers/metamobilepicker |
singularity registry hpc automated addition for metamobilepicker |
bsdcat, bsdcpio, bsdtar, conda2solv, dumpsolv, installcheck, mamba, mamba-package, mergesolv, metamobilepicker, repo2solv, testsolv, stone, conda-env, cph, plac_runner.py, yte, docutils, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, cmark, pulptest, cbc, clp, snakemake, snakemake-bash-completion, jp.py, tabulate, py.test, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen |
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GITHUB
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quay.io/biocontainers/metanovo |
singularity registry hpc automated addition for metanovo |
bp_export_proteins.py, bp_export_tags.py, bp_fasta_prepare.py, bp_mapped_tags.py, bp_parse_tags.py, compomics.sh, flex, flex++, m4, metanovo.sh, bc, dc, clhsdb, hsdb, parsort, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh, env_parallel.pdksh, env_parallel.sh, env_parallel.tcsh, env_parallel.zsh, niceload, parcat, parset, sem, sql, parallel, extcheck, java-rmi.cgi |
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GITHUB
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quay.io/biocontainers/metaomestats |
singularity registry hpc automated addition for metaomestats |
countAssembly.py, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/metaphlan |
shpc-registry automated BioContainers addition for metaphlan |
|
|
GITHUB
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quay.io/biocontainers/metaphlan2 |
shpc-registry automated BioContainers addition for metaphlan2 |
add_metadata_tree.py, build_tree_single_strain.py, compute_distance.py, compute_distance_all.py, dump_file.py, extract_markers.py, fastx_len_filter.py, fix_AF1.py, merge_metaphlan_tables.py, metaphlan2.py, metaphlan2krona.py, mixed_utils.py, ooSubprocess.py, plot_bug.py, plot_tree_ete2.py, plot_tree_graphlan.py, read_fastx.py, sam_filter.py, sample2markers.py, strainphlan.py, which.py, biom, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, muscle, compile-et.pl, prerr.properties |
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GITHUB
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quay.io/biocontainers/metaphor |
singularity registry hpc automated addition for metaphor |
metaphor, stone, plac_runner.py, yte, docutils, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, cmark, pulptest, cbc, clp, snakemake, snakemake-bash-completion, jp.py, tabulate, py.test, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign |
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GITHUB
|
quay.io/biocontainers/metaphyler |
shpc-registry automated BioContainers addition for metaphyler |
buildMetaphyler.pl, combine, installMetaphyler.pl, metaphylerClassify, metaphylerTrain, report.pl, runClassifier.pl, runMetaphyler.pl, simuReads, taxprof, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb, impala, makemat |
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GITHUB
|
quay.io/biocontainers/metapi |
shpc-registry automated BioContainers addition for metapi |
abi-dump.2.11.0, abi-load, abi-load.2, abi-load.2.11.0, align-cache.2.11.0, align-info.2.11.0, bam-load.2.11.0, cache-mgr.2.11.0, ccextract, ccextract.2, ccextract.2.11.0, cg-load.2.11.0, fasterq-dump-orig.2.11.0, fasterq-dump.2.11.0, fastq-dump-orig.2.11.0, fastq-dump.2.11.0, fastq-load, fastq-load.2, fastq-load.2.11.0, fd, helicos-load, helicos-load.2, helicos-load.2.11.0, illumina-dump.2.11.0, illumina-load, illumina-load.2, illumina-load.2.11.0, kar.2.11.0, kdbmeta.2.11.0, kget.2.11.0, latf-load.2.11.0, md5cp.2.11.0, metapi, pacbio-load, pacbio-load.2, pacbio-load.2.11.0, pacbio-loadxml, pacbio-loadxml.2, pacbio-loadxml.2.11.0, prefetch-orig.2.11.0, prefetch.2.11.0, rcexplain.2.11.0, read-filter-redact.2.11.0, sam-dump-orig.2.11.0, sam-dump.2.11.0, sff-dump.2.11.0, sff-load, sff-load.2, sff-load.2.11.0, sra-pileup-orig.2.11.0, sra-pileup.2.11.0, sra-sort-cg.2.11.0, sra-sort.2.11.0, sra-stat.2.11.0, srapath-orig.2.11.0, srapath.2.11.0, sratools.2.11.0, srf-load, srf-load.2, srf-load.2.11.0, test-sra.2.11.0, vdb-config.2.11.0, vdb-copy.2.11.0, vdb-decrypt.2.11.0, vdb-diff.2.11.0, vdb-dump-orig.2.11.0, vdb-dump.2.11.0, vdb-encrypt.2.11.0, vdb-lock.2.11.0, vdb-passwd.2.11.0, vdb-unlock.2.11.0, vdb-validate.2.11.0, stone, align-cache.2, md5cp.2, read-filter-redact.2, sra-sort-cg.2, vdb-diff.2, align-cache, fasterq-dump-orig, fastq-dump-orig, md5cp |
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GITHUB
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quay.io/biocontainers/metaplatanus |
singularity registry hpc automated addition for metaplatanus |
aggregateBinDepths.pl, aggregateContigOverlapsByBin.pl, contigOverlaps, file, gunzip, gzexe, gzip, jgi_summarize_bam_contig_depths, merge_depths.pl, metabat, metabat1, metabat2, metaplatanus, runMetaBat.sh, tgsgapcloser, tgsgapcloser_mod, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zmore, znew, 2to3-3.11, idle3.11, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, pydoc3.11, python3.11, python3.11-config, megahit, megahit_toolkit, seqkit, racon, rampler, racon_wrapper, sdust, paftools.js, minimap2, k8, qualfa2fq.pl, xa2multi.pl, bwa, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl |
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GITHUB
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quay.io/biocontainers/metaplex |
singularity registry hpc automated addition for metaplex |
Metaplex-calculate-IJR, Metaplex-length-filter, Metaplex-per-sample-filter, Metaplex-remultiplex, biom, cutadapt, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, mirror_server, mirror_server_stop, futurize, pasteurize, fasta-sanitize.pl, plot-ampliconstats, f2py3.9, h5clear, h5format_convert, h5watch, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short |
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GITHUB
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quay.io/biocontainers/metapop |
shpc-registry automated BioContainers addition for metapop |
MetaPop.R, MetaPop_Call_SNPs.R, MetaPop_Codon_Bias_Separate.R, MetaPop_Codon_Bias_Viz.R, MetaPop_Macrodiversity.R, MetaPop_Microdiversity.R, MetaPop_Microdiversity_Visualizations.R, MetaPop_Mine_Reads.R, MetaPop_Preprocess.R, MetaPop_Preprocessing_Summaries.R, gff2gff.py, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, fasta-sanitize.pl, plot-ampliconstats |
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GITHUB
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quay.io/biocontainers/metaprokka |
shpc-registry automated BioContainers addition for metaprokka |
metaprokka, tbl2asn-test, fix-sqn-date, faketime, real-tbl2asn, prokka-abricate_to_fasta_db, prokka, prokka-biocyc_to_fasta_db, prokka-build_kingdom_dbs, prokka-cdd_to_hmm, prokka-clusters_to_hmm, prokka-genbank_to_fasta_db |
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GITHUB
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quay.io/biocontainers/metaquant |
shpc-registry automated BioContainers addition for metaquant |
compare_gos.py, fetch_associations.py, find_enrichment.py, go_plot.py, map_to_slim.py, metaquant, ncbi_gene_results_to_python.py, plot_go_term.py, prt_terms.py, wr_hier.py, wr_sections.py, vba_extract.py, ete3, compile-et.pl, prerr.properties, cxpm, sxpm, qdistancefieldgenerator, qmlpreview, qvkgen, certutil |
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GITHUB
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quay.io/biocontainers/metaquantome |
shpc-registry automated BioContainers addition for metaquantome |
fetch_associations.py, find_enrichment.py, map_to_slim.py, metaquantome, plot_go_term.py, write_hierarchy.py, vba_extract.py, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, ete3, cxpm, sxpm, delaunay |
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GITHUB
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quay.io/biocontainers/metaseq-all |
shpc-registry automated BioContainers addition for metaseq-all |
bigBedToBed, bigWigSummary, download_metaseq_example_data.py, metaseq-cli, speedtest.py, bedGraphToBigWig, bedToBigBed, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py |
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GITHUB
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quay.io/biocontainers/metaseq |
shpc-registry automated BioContainers addition for metaseq |
|
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GITHUB
|
quay.io/biocontainers/metasnek |
singularity registry hpc automated addition for metasnek |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/metasnv |
shpc-registry automated BioContainers addition for metasnv |
metaSNV.py, metaSNV_DistDiv.py, metaSNV_Filtering.py, metaSNV_subpopr.R, pandoc-server, fasta-sanitize.pl, plot-ampliconstats, pandoc, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config |
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GITHUB
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quay.io/biocontainers/metasv |
shpc-registry automated BioContainers addition for metasv |
age_align, annotate_vcf_bam.py, pybedtools_demo.py, run_metasv.py, run_metasv_age.py, run_metasv_bed2vcf.py, run_metasv_sc_analysis.py, svtool_to_vcf.py, cds-mapping-stats, cds-subgraphs, mag-improve, spades-convert-bin-to-fasta, spades-gsimplifier, spades-kmer-estimating, spades-read-filter, spaligner, spades-bwa, spades-core |
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GITHUB
|
quay.io/biocontainers/metatree |
shpc-registry automated BioContainers addition for metatree |
genometreetk, metatree, phylorank, FastTree-2.1.10.c, ete3, FastTreeMP, FastTree, compile-et.pl, fasttree, prerr.properties, sumlabels.py, sumtrees.py, qdistancefieldgenerator |
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GITHUB
|
quay.io/biocontainers/metavelvet-annois |
shpc-registry automated BioContainers addition for metavelvet-annois |
run-annoIS.pl, config_data, perl5.32.1, streamzip |
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GITHUB
|
quay.io/biocontainers/metavelvet-sl-feature-extraction |
shpc-registry automated BioContainers addition for metavelvet-sl-feature-extraction |
FeatureExtract.pl, FeatureExtractPredict.pl, eval.pl, config_data, perl5.22.0, c2ph, pstruct, cpanm, perl5.26.2, podselect |
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GITHUB
|
quay.io/biocontainers/metavelvet-sl-pipeline |
shpc-registry automated BioContainers addition for metavelvet-sl-pipeline |
FeatureExtract.pl, FeatureExtractPredict.pl, GenerateCommand.pl, ReadTaxon.pl, checkdata.py, dwgsim, dwgsim_eval, dwgsim_eval_plot.py, dwgsim_mut_to_vcf.pl, dwgsim_pileup_eval.pl, easy.py, eval.pl, grid.py, meta-velvete, meta-velvetg, metaphlan2.py, metaphlan2krona.py, run-annoIS.pl, subset.py, svm-predict, svm-scale, svm-train, velvetg, velveth, config_data, easy_install-2.7, perl5.22.0, c2ph, pstruct |
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GITHUB
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quay.io/biocontainers/metavelvet-sl |
shpc-registry automated BioContainers addition for metavelvet-sl |
|
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GITHUB
|
quay.io/biocontainers/metavelvet |
shpc-registry automated BioContainers addition for metavelvet |
|
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GITHUB
|
quay.io/biocontainers/metawatt |
shpc-registry automated BioContainers addition for metawatt |
demuxbyname2.sh, metawatt, build.sh, common.go, rchive.go, setup-deps.log, setup.sh, xtract.go, addssu.sh, adjusthomopolymers.sh, analyzeaccession.sh, analyzegenes.sh |
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GITHUB
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quay.io/biocontainers/metawrap-mg |
shpc-registry automated BioContainers addition for metawrap-mg |
FragGeneScan, Makefile, Makefile.am, Makefile.in, aalookup_unit_test, aascan_unit_test, aclocal.bak, aggregateBinDepths.pl, aggregateContigOverlapsByBin.pl, align_format_unit_test, alignments-filter, autoheader.bak, autom4te.bak, automake.bak, autoreconf.bak, autoscan.bak, autoupdate.bak, b2, bazel-scan.py, bdbloader_unit_test, binner, bjam, bl2seq_unit_test, blast_format_unit_test, blast_services_unit_test, blast_unit_test, blastdb_format_unit_test, blastdiag_unit_test, blastengine_unit_test, blastextend_unit_test, blastfilter_unit_test, blasthits_unit_test, blastinput_unit_test, blastoptions_unit_test, blastsetup_unit_test, bmfilter, bmtagger.sh, bmtool, checkm, concoct, concoct_coverage_table.py, concoct_refine, config-metawrap, contigOverlaps, cut_up_fasta.py, delta_unit_test, extract_fasta_bins.py, extract_fullseq, fa2fq, fa2fq.o, fasta-strip-identifier, filter_blat, filter_blat.o, filter_contigs, filter_contigs.o, filterfa, filterfa.o, fq2fa, fq2fa.o, gapinfo_unit_test, gencode_singleton_unit_test, gene_info_unit_test, hspfilter_besthit_unit_test, hspfilter_culling_unit_test, hspstream_unit_test, icarus.py, idba, idba.o, idba_hybrid, idba_hybrid.o, idba_tran, idba_tran.o, idba_tran_test, idba_tran_test.o, idba_ud, idba_ud.o, ifnames.bak, jgi_summarize_bam_contig_depths, kraken, kraken-build, kraken-filter, kraken-mpa-report, kraken-report, kraken-translate, kraken2, kraken2-build, kraken2-inspect, ktClassifyHits, ktImportHits, last-merge-batches, last_maf_convert.py, linkhsp_unit_test, magicblast_unit_test, megahit_asm_core, megahit_sdbg_build, merge_cutup_clustering.py, metaWRAP, metabat, metabat1, metabat2, metaquast, metaquast.py, metawrap, msa2pssm_unit_test, ntlookup_unit_test, ntscan_unit_test, optionshandle_unit_test, parallel_blat, parallel_blat.o, parallel_rna_blat, parallel_rna_blat.o, phiblast_unit_test, prelimsearch_unit_test, print_graph, print_graph.o, prokka-make_tarball, psibl2seq_unit_test, psiblast_iteration_unit_test, psiblast_unit_test, pssmcreate_unit_test, pssmenginefreqratios_unit_test, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, querydata_unit_test, queryinfo_unit_test, raw_n50, raw_n50.o, redoalignment_unit_test, remote_blast_unit_test, rps_unit_test, run-unittest.py, runMetaBat.sh, run_FragGeneScan.pl, run_MaxBin.pl, sample_reads, sample_reads.o, scaffold, scaffold.o, scan.py, scoreblk_unit_test, search_strategy_unit_test, seqdb_unit_test, seqinfosrc_unit_test, seqsrc_unit_test, setupfactory_unit_test, shuffle_reads, shuffle_reads.o, sim_reads, sim_reads.o, sim_reads_tran, sim_reads_tran.o, sort_psl, sort_psl.o, sort_reads, sort_reads.o, split_fa, split_fa.o, split_fq, split_fq.o, split_query_unit_test, split_scaffold, split_scaffold.o, srprism, stat_unit_test, subj_ranges_unit_test, taxator, taxatortk.py, taxknife, taxsummary2krona, test.o, traceback_unit_test, tracebacksearch_unit_test, trim_galore, uniform_search_unit_test, validate_blat, validate_blat_parallel, validate_blat_parallel_local, validate_blat_parallel_rna, validate_component, validate_component.o, validate_contigs_blat, validate_contigs_blat.o, validate_contigs_mummer, validate_contigs_mummer.o, validate_mummer, validate_reads_blat, validate_reads_blat.o, validate_rna, validate_rna.o, version_reference_unit_test, writedb_unit_test, salmon, circos, circos.exe, compile.bat, compile.make, gddiag, glimmerhmm, glimmhmm.pl, ktClassifyBLAST, ktGetContigMagnitudes |
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GITHUB
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quay.io/biocontainers/metawrap |
shpc-registry automated BioContainers addition for metawrap |
|
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GITHUB
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quay.io/biocontainers/metaxa |
shpc-registry automated BioContainers addition for metaxa |
hmmc2, hmmerfm-exactmatch, metaxa2, metaxa2_c, metaxa2_dbb, metaxa2_dc, metaxa2_install_database, metaxa2_rf, metaxa2_si, metaxa2_ttt, metaxa2_uc, metaxa2_x, vsearch, test_pcre, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, seedtop, mafft-sparsecore.rb, einsi, fftns |
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GITHUB
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quay.io/biocontainers/metdatamodel |
singularity registry hpc automated addition for metdatamodel |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, python3.1 |
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GITHUB
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quay.io/biocontainers/meteor |
singularity registry hpc automated addition for meteor |
genl-ctrl-list, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, idiag-socket-details, meteor, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave, nl-link-ifindex2name, nl-link-list, nl-link-name2ifindex, nl-link-release, nl-link-set, nl-link-stats, nl-list-caches, nl-list-sockets, nl-monitor, nl-neigh-add, nl-neigh-delete, nl-neigh-list, nl-neightbl-list, nl-nh-list, nl-pktloc-lookup, nl-qdisc-add, nl-qdisc-delete, nl-qdisc-list, nl-route-add, nl-route-delete, nl-route-get, nl-route-list, nl-rule-list, nl-tctree-list, nl-util-addr, protoc-25.3.0, raxml-ng, raxml-ng-mpi, cmtime, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, mckey, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, ucmatose, udaddy, udpong, annot-tsv, h5tools_test_utils, io_demo |
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GITHUB
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quay.io/biocontainers/metfrag |
shpc-registry automated BioContainers addition for metfrag |
metfrag, zip, funzip, unzipsfx, zipgrep, zipinfo, unzip, parsort, perl5.32.0, env_parallel, env_parallel.ash |
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GITHUB
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quay.io/biocontainers/methbat |
singularity registry hpc automated addition for methbat |
methbat |
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GITHUB
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quay.io/biocontainers/methphaser |
singularity registry hpc automated addition for methphaser |
meth_phaser_parallel, meth_phaser_post_processing, methphasing, tjbench, tqdm, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/methpipe |
singularity registry hpc automated addition for methpipe |
allelicmeth, amrfinder, amrtester, bsrate, clean-hairpins, dmr, duplicate-remover, fast-liftover, format_reads, guessprotocol, hmr, hmr_rep, hypermr, lc_approx, levels, lift-filter, merge-bsrate, merge-methcounts, methcounts, methdiff, methentropy, methstates, mlml, multimethstat, pmd, radmeth, roimethstat, selectsites, symmetric-cpgs, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/methplotlib |
shpc-registry automated BioContainers addition for methplotlib |
allele_specific_modification, differential_modification, methplotlib, tabulate, natsort, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config |
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GITHUB
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quay.io/biocontainers/methylartist |
shpc-registry automated BioContainers addition for methylartist |
check_compression, compress_fast5, demux_fast5, fast5_subset, methylartist, multi_to_single_fast5, single_to_multi_fast5, tar, doesitcache, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py |
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GITHUB
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quay.io/biocontainers/methyldackel |
shpc-registry automated BioContainers addition for methyldackel |
MethylDackel, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/methylextract |
shpc-registry automated BioContainers addition for methylextract |
MethylExtract.pl, MethylExtractBSCR.pl, MethylExtractBSPvalue.pl, perl5.26.2, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite |
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GITHUB
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quay.io/biocontainers/methylmap |
singularity registry hpc automated addition for methylmap |
methylmap, tabulate, natsort, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, htsfile, bgzip, tabix, python3.1 |
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GITHUB
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quay.io/biocontainers/methylpy |
shpc-registry automated BioContainers addition for methylpy |
methylpy, wigToBigWig, picard, cutadapt, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie |
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GITHUB
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quay.io/biocontainers/metilene |
shpc-registry automated BioContainers addition for metilene |
metilene, metilene_input.pl, metilene_output.R, metilene_output.pl, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed |
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GITHUB
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quay.io/biocontainers/mfold |
singularity registry hpc automated addition for mfold |
add_dHdSTm, add_dHdSTm2, auxgen, boxplot_ng, ct2bp, ct_boxplot_ng, ct_compare, distance, efn, efn2, filter-sort, h-num, h_num, mfold, mfold_datdir, mfold_quik, myps2img.bash, myps2jpg.bash, myps2pdf.bash, myps2png.bash, nafold, newtemp, overlay_boxplot_ng, quikfold, reformat-seq.sh, sav2p_num, sav2plot, scorer, sir_graph, ss_count |
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GITHUB
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quay.io/biocontainers/mfqe |
shpc-registry automated BioContainers addition for mfqe |
mfqe |
|
GITHUB
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quay.io/biocontainers/mg-toolkit |
shpc-registry automated BioContainers addition for mg-toolkit |
mg-toolkit, jsonschema, tqdm, chardetect, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/mgatk |
singularity registry hpc automated addition for mgatk |
mgatk, mgatk-del, mgatk-del-find, jwebserver, picard, yte, plac_runner.py, docutils, pulptest, cbc, clp, humanfriendly, jpackage, snakemake, snakemake-bash-completion, tabulate, jupyter-trust, py.test, pytest, jupyter, jupyter-migrate, jupyter-troubleshoot, cups-config, ippeveprinter, ipptool, rst2html4.py, rst2html5.py, rst2html.py |
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GITHUB
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quay.io/biocontainers/mgca |
singularity registry hpc automated addition for mgca |
DateRepeats, DupMasker, EukHighConfidenceFilter, PhiSpy.py, ProcessRepeats, RM2Bed.py, RepeatMasker, RepeatProteinMask, amr_report, amrfinder, amrfinder_update, bakta, bakta_db, bakta_proteins, buildRMLibFromEMBL.pl, buildSummary.pl, calcDivergenceFromAlign.pl, cas1_db.pdb, cas1_db.phd, cas1_db.phi, cas1_db.phr, cas1_db.pin, cas1_db.pog, cas1_db.pot, cas1_db.psq, cas1_db.ptf, cas1_db.pto, cas_all_but_1_db.pdb, cas_all_but_1_db.phd, cas_all_but_1_db.phi, cas_all_but_1_db.phr, cas_all_but_1_db.pin, cas_all_but_1_db.pog, cas_all_but_1_db.pot, cas_all_but_1_db.psq, cas_all_but_1_db.ptf, cas_all_but_1_db.pto, compare_predictions_to_phages.py, covels-SE, coves-SE, createRepeatLandscape.pl, create_dbs.py, delta2vcf, dna_mutation, download_eggnog_data.py, dupliconToSVG.pl, emapper.py, eufindtRNA, fasta2gsi, fasta2parts, fasta_check, fasta_extract, getRepeatMaskerBatch.pl, gff_check, grf-alignment, grf-alignment2, grf-dbn, grf-filter, grf-intersperse, grf-main, grf-mite-cluster, grf-nest, hmm_mapper.py, hmm_server.py, hmm_worker.py, hypothesis, islandpath, lastz, lastz_32, lastz_D, make_training_sets.py, mark_prophage_features.py, maskFile.pl, mgca, phispy, pilercr, plot_pI.R, plot_stats.py, print_pI.pl, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, run_PhiSpy.pl, run_islandpath.pl, run_opfi.py, setupDB, sstofa, tRNAscan-SE, tRNAscan-SE.conf, trfMask, trnascan-1.4, wublastToCrossmatch.pl, rmblastn, trf4.10.0-rc.2.linux64.exe, trf, xmlget, xmltext, blast_report, blastdb_convert, blastdb_path, aaindexextract, abiview, acdc, acdgalaxy, acdlog, acdpretty, acdtable, acdtrace, acdvalid, aligncopy, aligncopypair, antigenic, assemblyget, backtranambig, backtranseq, banana, biosed |
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GITHUB
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quay.io/biocontainers/mgcod |
singularity registry hpc automated addition for mgcod |
data.py, mgcod.py, multiprocess_mgcod.py, pipeline.py, results.py, visualizations.py, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/mgcplotter |
singularity registry hpc automated addition for mgcplotter |
COGclassifier, MGCplotter, generate_cog_color_template, plot_cog_classifier_barchart, plot_cog_classifier_piechart, circos, circos.exe, compile.bat, compile.make, gddiag, list.modules, test.modules, mmseqs, gawk-5.1.0, awk, gawk, bdf2gdfont.pl, jsonschema, idn2, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, bdftogd, gd2copypal, gd2togif, gd2topng, gdcmpgif |
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GITHUB
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quay.io/biocontainers/mge-cluster |
singularity registry hpc automated addition for mge-cluster |
Bifrost, mge_cluster, unitig-caller, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/mgems |
singularity registry hpc automated addition for mgems |
mGEMS |
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GITHUB
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quay.io/biocontainers/mgf-formatter |
shpc-registry automated BioContainers addition for mgf-formatter |
mgf-formatter, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/mgikit |
singularity registry hpc automated addition for mgikit |
mgikit |
|
GITHUB
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quay.io/biocontainers/mgkit |
shpc-registry automated BioContainers addition for mgkit |
add-gff-info, blast2gff, download-ncbi-taxa.sh, download-taxonomy.sh, download-uniprot-taxa.sh, edit-gff, extract-gff-info, fasta-utils, fastq-utils, filter-gff, get-gff-info, hmmer2gff, htseq-count-barcodes, json2gff, pnps-gen, sampling-utils, snp_parser, sort-gff.sh, taxon-utils, htseq-count, htseq-qa, pt2to3, ptdump, ptrepack, pttree, mirror_server, mirror_server_stop, f2py3.6, normalizer |
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GITHUB
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quay.io/biocontainers/mglex |
shpc-registry automated BioContainers addition for mglex |
mglex-cli, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
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quay.io/biocontainers/mgltools |
shpc-registry automated BioContainers addition for mgltools |
adt, archosv, babel, evol, ipcluster, ipcluster2, ipcontroller, ipcontroller2, ipengine, ipengine2, iptest2, ipython2, mglbabel, mglenv.csh, mglenv.sh, mglobabel, mglobchiral, mglobconformer, mglobenergy, mglobfit, mglobgen, mglobgrep, mglobminimize, mglobprobe, mglobprop, mglobrms, mglobrotamer, mglobrotate, mglobspectrophore, mglroundtrip, obchiral, pip2, pip2.7, pmv, prepare_ligand4.py, prepare_receptor4.py, prody, pythonsh, raccoon, radical-utils-fix-headers.pl, radical-utils-mongodb.py, radical-utils-pylint.sh, radical-utils-version, runAdt, sagapython-version, tester, vision, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop |
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GITHUB
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quay.io/biocontainers/mgnify-pipelines-toolkit |
singularity registry hpc automated addition for mgnify-pipelines-toolkit |
are_there_primers, assess_inflection_point_mcp, assess_mcp_proportions, classify_var_regions, find_mcp_inflection_points, get_subunits, get_subunits_coords, make_asv_count_table, mapseq2biom, remove_ambiguous_reads, rev_comp_se_primers, standard_primer_matching, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config |
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GITHUB
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quay.io/biocontainers/mgs-canopy |
shpc-registry automated BioContainers addition for mgs-canopy |
canopy, cc.bin |
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GITHUB
|
quay.io/biocontainers/mhap |
shpc-registry automated BioContainers addition for mhap |
mhap, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
|
quay.io/biocontainers/mhc-annotation |
singularity registry hpc automated addition for mhc-annotation |
mhca, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py, bed_count_overlapping.py, bed_coverage.py, bed_coverage_by_interval.py, bed_diff_basewise_summary.py, bed_extend_to.py, bed_intersect.py, bed_intersect_basewise.py, bed_merge_overlapping.py, bed_rand_intersect.py, bed_subtract_basewise.py, bnMapper.py, div_snp_table_chr.py, find_in_sorted_file.py, gene_fourfold_sites.py, get_scores_in_intervals.py |
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GITHUB
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quay.io/biocontainers/mhcflurry |
shpc-registry automated BioContainers addition for mhcflurry |
_mhcflurry-cluster-worker-entry-point, mhcflurry-calibrate-percentile-ranks, mhcflurry-class1-select-allele-specific-models, mhcflurry-class1-select-pan-allele-models, mhcflurry-class1-select-processing-models, mhcflurry-class1-train-allele-specific-models, mhcflurry-class1-train-pan-allele-models, mhcflurry-class1-train-presentation-models, mhcflurry-class1-train-processing-models, mhcflurry-downloads, mhcflurry-predict, mhcflurry-predict-scan, pyjwt, estimator_ckpt_converter, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, pyrsa-decrypt, pyrsa-encrypt |
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GITHUB
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quay.io/biocontainers/mhcgnomes |
singularity registry hpc automated addition for mhcgnomes |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
|
quay.io/biocontainers/mhcnames |
shpc-registry automated BioContainers addition for mhcnames |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/mhcnuggets |
shpc-registry automated BioContainers addition for mhcnuggets |
theano-cache, theano-nose, freeze_graph, mako-render, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard |
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GITHUB
|
quay.io/biocontainers/mhg |
shpc-registry automated BioContainers addition for mhg |
MHG, MHG-partition, genome-to-blast-db, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides |
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GITHUB
|
quay.io/biocontainers/micall-lite |
shpc-registry automated BioContainers addition for micall-lite |
micall, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, 2to3-3.8 |
|
GITHUB
|
quay.io/biocontainers/micom |
singularity registry hpc automated addition for micom |
httpx, isympy, cmark, glpsol, pygmentize, futurize, pasteurize, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/micro_razers |
shpc-registry automated BioContainers addition for micro_razers |
micro_razers |
|
GITHUB
|
quay.io/biocontainers/microbeannotator |
singularity registry hpc automated addition for microbeannotator |
microbeannotator, microbeannotator_db_builder, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/microbecensus |
shpc-registry automated BioContainers addition for microbecensus |
run_microbe_census.py, enhancer.py, explode.py, gifmaker.py, painter.py, player.py, thresholder.py, viewer.py, pilconvert.py, pildriver.py, pilfile.py |
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GITHUB
|
quay.io/biocontainers/microhapdb |
shpc-registry automated BioContainers addition for microhapdb |
microhapdb, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/microhapulator |
shpc-registry automated BioContainers addition for microhapulator |
happer, iss, mhpl8r, termgraph, stone, flash, plac_runner.py, yte, docutils, x86_64-conda_cos7-linux-gnu-ld, jpackage, fastqc, grpc_cpp_plugin, grpc_csharp_plugin |
|
GITHUB
|
quay.io/biocontainers/microphaser |
shpc-registry automated BioContainers addition for microphaser |
microphaser |
|
GITHUB
|
quay.io/biocontainers/micropita |
shpc-registry automated BioContainers addition for micropita |
|
|
GITHUB
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quay.io/biocontainers/microview |
singularity registry hpc automated addition for microview |
frictionless, marko, microview, petl, typer, slugify, rich-click, h5tools_test_utils, biom, h5fuse.sh, markdown-it, h5delete, cygdb, cython, cythonize, tabulate, natsort, py.test, pytest, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, jsonschema, pygmentize, chardetect, tjbench, fonttools, pyftmerge |
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GITHUB
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quay.io/biocontainers/midas |
shpc-registry automated BioContainers addition for midas |
build_midas_db.py, call_consensus.py, compare_genes.py, hs-blastn, merge_midas.py, query_by_compound.py, run_midas.py, snp_diversity.py, strain_tracking.py, CA.pm, cacert.pem, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras, pm-collect, readme.pdf |
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GITHUB
|
quay.io/biocontainers/midsv |
singularity registry hpc automated addition for midsv |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/miga |
singularity registry hpc automated addition for miga |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/migmap |
shpc-registry automated BioContainers addition for migmap |
edit_imgt_file.pl, igblastn, igblastp, migmap, clhsdb, hsdb, perl5.32.0, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool |
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GITHUB
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quay.io/biocontainers/migraine |
shpc-registry automated BioContainers addition for migraine |
migraine |
|
GITHUB
|
quay.io/biocontainers/migrate-n |
shpc-registry automated BioContainers addition for migrate-n |
migrate-n, migrate-n-mpi, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun |
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GITHUB
|
quay.io/biocontainers/miidl |
shpc-registry automated BioContainers addition for miidl |
convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, f2py3.7, opj_compress, opj_decompress, opj_dump, 2to3-3.7, idle3.7, pydoc3.7 |
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GITHUB
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quay.io/biocontainers/mikado |
shpc-registry automated BioContainers addition for mikado |
add_transcript_feature_to_gtf.py, align_collect.py, asm_collect.py, bam2gtf.py, black, black-primer, blackd, calculate_distances.py, class_run.py, convert_cdna_match_gff3.py, daijin, extract_promoter_regions.py, getFastaFromIds.py, gffjunc_to_bed12.py, grep.py, hypothesis, merge_junction_bed12.py, mikado, remove_from_embl.py, remove_utrs.py, sanitize_blast_db.py, split_fasta.py, tease_maker_apart.py, trim_long_introns.py, stone, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file |
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GITHUB
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quay.io/biocontainers/mikrokondo-tools |
singularity registry hpc automated addition for mikrokondo-tools |
idle3.13, mikrokondo-tools, pydoc3.13, python3.13, python3.13-config, jsonschema, normalizer |
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GITHUB
|
quay.io/biocontainers/milonga |
singularity registry hpc automated addition for milonga |
NanoFilt, NanoStat, TMalign, abricate, abricate-get_db, bioawk, checkm, coronaspades.py, create_hybrid_samplesheet.sh, make_pscores.pl, metaplasmidspades.py, metaviralspades.py, milonga.py, milonga_setup.sh, platon, qcat, qcat-eval, qcat-eval-truth, qcat-roc, rnaviralspades.py, taxonkit, unicycler, kraken2, kraken2-build, kraken2-inspect, poa, porechop, miniasm, minidot, flye-modules, flye-samtools, delta2vcf, flye, flye-minimap2, pilon, rppr, RNAmultifold, rsync-ssl, clustalo, guppy, pplacer, any2fasta, hwloc-gather-cpuid, rsync, hwloc-annotate, hwloc-bind, hwloc-calc |
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GITHUB
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quay.io/biocontainers/mimeo |
shpc-registry automated BioContainers addition for mimeo |
mimeo-filter, mimeo-map, mimeo-self, mimeo-x, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/mimodd |
shpc-registry automated BioContainers addition for mimodd |
BATCH, COMPILE, INSTALL, LINK, REMOVE, Rcmd, Rd2pdf, Rdconv, Rdiff, Rprof, SHLIB, Stangle, Sweave, ar, build, c++, cc, check, config, f77, f77_f2c, fc, g++, gcc, gfortran, javareconf, mimodd, mkinstalldirs, pager, ranlib, rtags, strip, libtool, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config |
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GITHUB
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quay.io/biocontainers/mimseq |
shpc-registry automated BioContainers addition for mimseq |
atoiindex, cmetindex, cpuid, dbsnp_iit, ensembl_genes, fa_coords, get-genome, gff3_genes, gff3_introns, gff3_splicesites, git2_cli, gmap.sse42, gmap_build, gmap_compress, gmap_process, gmap_reassemble, gmap_uncompress, gmapindex, gmapl, gmapl.sse42, gsnap, gsnap.sse42, gsnapl, gsnapl.sse42, gtf_genes, gtf_introns, gtf_splicesites, gtf_transcript_splicesites, gvf_iit, iit_dump, iit_get, iit_store, md_coords, mimseq, psl_genes, psl_introns, psl_splicesites, pyfiglet, sam_sort, snpindex, trindex, vcf_iit, gmap, pandoc-server, cmalign, cmbuild, cmcalibrate, cmconvert, cmemit, cmfetch, cmpress, cmscan |
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GITHUB
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quay.io/biocontainers/mimsi |
shpc-registry automated BioContainers addition for mimsi |
analyze, create_data, evaluate_sample, mi_msi_train_test, visualize_instance, nosetests-3.9, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, nosetests, f2py3.8, opj_compress, opj_decompress, opj_dump, 2to3-3.8 |
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GITHUB
|
quay.io/biocontainers/minced |
shpc-registry automated BioContainers addition for minced |
minced, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
|
quay.io/biocontainers/mindagap |
singularity registry hpc automated addition for mindagap |
Dockerfile, LICENSE, SvtAv1DecApp, SvtAv1EncApp, asn1Coding, asn1Decoding, asn1Parser, dav1d, dumpsexp, duplicate_finder.py, env.yml, ffmpeg, ffprobe, free, gpg-error, gpgrt-config, h264dec, h264enc, h5delete, hmac256, imgcmp, imginfo, jasper, jiv, libgcrypt-config, markdown-it, mindagap.py, mpg123, mpg123-id3dump, mpg123-strip, mpicalc, opencv_annotation, opencv_interactive-calibration, opencv_model_diagnostics, opencv_version, opencv_visualisation, opencv_waldboost_detector, orc-bugreport, orcc, out123, p11-kit, p11tool, pgrep, pidof, pkill, pmap, ps, pwdx, rgb_from_z_tiles.py, setup_vars_opencv4.sh, slabtop, tload, top, trust, vmstat, vpxdec, vpxenc, w, watch, x264, x265, yat2m, tiff2fsspec, aomdec, aomenc, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lame, lsm2bin, tifffile, zfp, zopfli, zopflipng, attr, balsam, getfattr, jackd, lprodump, lrelease-pro, lupdate-pro, meshdebug, pa-info, pacat |
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GITHUB
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quay.io/biocontainers/mindthegap |
shpc-registry automated BioContainers addition for mindthegap |
MindTheGap, dbgh5, dbginfo |
|
GITHUB
|
quay.io/biocontainers/minepy |
shpc-registry automated BioContainers addition for minepy |
f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
|
quay.io/biocontainers/mini3di |
singularity registry hpc automated addition for mini3di |
numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/minia |
shpc-registry automated BioContainers addition for minia |
gatb-h5dump, merci, minia |
|
GITHUB
|
quay.io/biocontainers/minialign |
shpc-registry automated BioContainers addition for minialign |
minialign |
|
GITHUB
|
quay.io/biocontainers/miniasm |
shpc-registry automated BioContainers addition for miniasm |
miniasm, minidot |
|
GITHUB
|
quay.io/biocontainers/minibusco |
singularity registry hpc automated addition for minibusco |
minibusco, miniprot, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn, esl-seqrange, esl-seqstat, esl-sfetch |
|
GITHUB
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quay.io/biocontainers/minigraph |
shpc-registry automated BioContainers addition for minigraph |
minigraph |
|
GITHUB
|
quay.io/biocontainers/minimac4 |
singularity registry hpc automated addition for minimac4 |
cget, edonr256-hash, edonr512-hash, gost12-256-hash, gost12-512-hash, minimac4, ccmake, cmake, cpack, ctest, ed2k-link, has160-hash, idle3.13, magnet-link, pydoc3.13, python3.13, python3.13-config, rhash, sfv-hash, tiger-hash, tth-hash, whirlpool-hash, annot-tsv, gff2gff.py, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl |
|
GITHUB
|
quay.io/biocontainers/minimap |
shpc-registry automated BioContainers addition for minimap |
|
|
GITHUB
|
quay.io/biocontainers/minimap2-coverage |
shpc-registry automated BioContainers addition for minimap2-coverage |
minimap2-coverage |
|
GITHUB
|
quay.io/biocontainers/minimap2 |
shpc-registry automated BioContainers addition for minimap2 |
|
|
GITHUB
|
quay.io/biocontainers/minimizers |
singularity registry hpc automated addition for minimizers |
bio, fasta_filter.py, minimizers, numpy-config, xslt-config, xsltproc, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tqdm, normalizer |
|
GITHUB
|
quay.io/biocontainers/minimock |
shpc-registry automated BioContainers addition for minimock |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/minipolish |
shpc-registry automated BioContainers addition for minipolish |
minipolish, racon, rampler, racon_wrapper, sdust, paftools.js, minimap2, k8, 2to3-3.10, idle3.10, pydoc3.10 |
|
GITHUB
|
quay.io/biocontainers/miniprot-boundary-scorer |
singularity registry hpc automated addition for miniprot-boundary-scorer |
miniprot_boundary_scorer |
|
GITHUB
|
quay.io/biocontainers/miniprot |
shpc-registry automated BioContainers addition for miniprot |
miniprot |
|
GITHUB
|
quay.io/biocontainers/minirmd |
shpc-registry automated BioContainers addition for minirmd |
minirmd |
|
GITHUB
|
quay.io/biocontainers/minnow |
shpc-registry automated BioContainers addition for minnow |
fixfasta, minnow |
|
GITHUB
|
quay.io/biocontainers/minorseq |
shpc-registry automated BioContainers addition for minorseq |
ccs, ccs-alt, cleric, fuse, juliet, julietflow, mixdata, pbmm2, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats |
|
GITHUB
|
quay.io/biocontainers/mintie |
shpc-registry automated BioContainers addition for mintie |
SOAPdenovo-Trans-127mer, SOAPdenovo-Trans-31mer, Xcalcmem.sh, atoiindex, bg-bpipe, bpipe, bpipe-groovy, bpipe-pbspro.sh, bpipe-slurm.sh, bpipe-torque.sh, bpipe-utils.sh, bulk-counts, cmetindex, cpuid, dbsnp_iit, ensembl_genes, fa_coords, fasta_clipping_histogram.pl, fasta_formatter, fasta_nucleotide_changer, fastq_masker, fastq_quality_boxplot_graph.sh, fastq_quality_converter, fastq_quality_filter, fastq_quality_trimmer, fastq_to_fasta, fastuniq, fastx_artifacts_filter, fastx_barcode_splitter.pl, fastx_clipper, fastx_collapser, fastx_nucleotide_distribution_graph.sh, fastx_nucleotide_distribution_line_graph.sh, fastx_quality_stats, fastx_renamer, fastx_reverse_complement, fastx_trimmer, fastx_uncollapser, get-genome, gff3_genes, gff3_introns, gff3_splicesites, gmap.nosimd, gmap.sse42, gmap_build, gmap_cat, gmap_process, gmapindex, gmapl, gmapl.nosimd, gmapl.sse42, groovy_script, gsnap, gsnap.nosimd, gsnap.sse42, gsnapl, gsnapl.nosimd, gsnapl.sse42, gtf_genes, gtf_introns, gtf_splicesites, gtf_transcript_splicesites, gvf_iit, iit_dump, iit_get, iit_store, indexdb_cat, md_coords, mintie, psl_genes, psl_introns, psl_splicesites, sam_sort, sc-counts, snpindex, trindex, vcf_iit, velocity-counts, gmap, salmon, kmutate.sh, nosetests-3.9, runhmm.sh, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh |
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GITHUB
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quay.io/biocontainers/mintmap |
shpc-registry automated BioContainers addition for mintmap |
MINTmap.pl, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/minute |
singularity registry hpc automated addition for minute |
abi-dump.2.11.0, abi-load, abi-load.2, abi-load.2.11.0, align-cache.2.11.0, align-info.2.11.0, alignmentSieve, bam-load.2.11.0, bamCompare, bamCoverage, bamPEFragmentSize, bigwigCompare, cache-mgr.2.11.0, ccextract, ccextract.2, ccextract.2.11.0, cg-load.2.11.0, computeGCBias, computeMatrix, computeMatrixOperations, correctGCBias, deeptools, estimateReadFiltering, estimateScaleFactor, fasterq-dump-orig.2.11.0, fasterq-dump.2.11.0, fastq-dump-orig.2.11.0, fastq-dump.2.11.0, fastq-load, fastq-load.2, fastq-load.2.11.0, helicos-load, helicos-load.2, helicos-load.2.11.0, igvtools, illumina-dump.2.11.0, illumina-load, illumina-load.2, illumina-load.2.11.0, je, kar.2.11.0, kdbmeta.2.11.0, kget.2.11.0, latf-load.2.11.0, md5cp.2.11.0, minute, multiBamSummary, multiBigwigSummary, pacbio-load, pacbio-load.2, pacbio-load.2.11.0, pacbio-loadxml, pacbio-loadxml.2, pacbio-loadxml.2.11.0, plotCorrelation, plotCoverage, plotEnrichment, plotFingerprint, plotHeatmap, plotPCA, plotProfile, prefetch-orig.2.11.0, prefetch.2.11.0, rcexplain.2.11.0, read-filter-redact.2.11.0, sam-dump-orig.2.11.0, sam-dump.2.11.0, sff-dump.2.11.0, sff-load, sff-load.2, sff-load.2.11.0, sra-pileup-orig.2.11.0, sra-pileup.2.11.0, sra-sort-cg.2.11.0, sra-sort.2.11.0, sra-stat.2.11.0, srapath-orig.2.11.0, srapath.2.11.0, sratools.2.11.0, srf-load, srf-load.2, srf-load.2.11.0, test-sra.2.11.0, vdb-config.2.11.0, vdb-copy.2.11.0, vdb-decrypt.2.11.0, vdb-diff.2.11.0, vdb-dump-orig.2.11.0, vdb-dump.2.11.0, vdb-encrypt.2.11.0, vdb-lock.2.11.0, vdb-passwd.2.11.0, vdb-unlock.2.11.0, vdb-validate.2.11.0, align-cache.2, md5cp.2, multiqc, read-filter-redact.2, sra-sort-cg.2, vdb-diff.2, align-cache, fasterq-dump-orig, fastq-dump-orig, md5cp, prefetch-orig, read-filter-redact, sam-dump-orig, sra-pileup-orig, sra-sort-cg, srapath-orig, sratools.2, vdb-diff, abi-dump.2, align-info.2, bam-load.2, cache-mgr.2, cg-load.2, fasterq-dump.2, fastq-dump.2 |
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GITHUB
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quay.io/biocontainers/minvar |
shpc-registry automated BioContainers addition for minvar |
_gdlib-config, blast2sam, lofreq, lofreq2_call_pparallel.py, lofreq2_somatic.py, minvar, sierrapy, _bdftogd, _gd2copypal, _gd2togif, _gd2topng, _gdcmpgif, _gdparttopng, _gdtopng, _giftogd2, _pngtogd, _pngtogd2 |
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GITHUB
|
quay.io/biocontainers/minys |
shpc-registry automated BioContainers addition for minys |
MinYS.py, MindTheGap, average_nucleotide_identity.py, dbgh5, dbginfo, delta_filter_wrapper.py, enumerate_paths.py, filter_components.py, gatb-h5dump, genbank_get_genomes_by_taxon.py, graph_simplification.py, merci, minia, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb, impala, makemat |
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GITHUB
|
quay.io/biocontainers/mir-prefer |
shpc-registry automated BioContainers addition for mir-prefer |
bowtie-align-reads.py, convert-mirdeep2-fasta.py, convert-readcount-file.py, miR_PREFeR.py, process-reads-fasta.py, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold |
|
GITHUB
|
quay.io/biocontainers/mira-moods |
singularity registry hpc automated addition for mira-moods |
moods-dna.py, ccache-swig, swig, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/mira-multiome |
singularity registry hpc automated addition for mira-multiome |
alembic, lisa, moods-dna.py, optuna, ccache-swig, swig, pbr, torchrun, h5delete, mako-render, convert-caffe2-to-onnx, convert-onnx-to-caffe2, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, google-oauthlib-tool, aec, tensorboard |
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GITHUB
|
quay.io/biocontainers/mira |
shpc-registry automated BioContainers addition for mira |
mira, mira-install-sls-rrna.sh, mirabait, miraconvert, miramem |
|
GITHUB
|
quay.io/biocontainers/miranda |
shpc-registry automated BioContainers addition for miranda |
miranda |
|
GITHUB
|
quay.io/biocontainers/mirdeep-p2 |
shpc-registry automated BioContainers addition for mirdeep-p2 |
afetch, alistat, compalign, compstruct, miRDP2-v1.1.4_pipeline.bash, randfold, revcomp, seqsplit, seqstat, sfetch, shuffle, sindex, sreformat, translate, weight, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold |
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GITHUB
|
quay.io/biocontainers/mirdeep2 |
shpc-registry automated BioContainers addition for mirdeep2 |
afetch, alistat, bwa_sam_converter.pl, clip_adapters.pl, collapse_reads_md.pl, compalign, compstruct, convert_bowtie_output.pl, excise_precursors.pl, excise_precursors_iterative_final.pl, extract_miRNAs.pl, fastaparse.pl, fastaselect.pl, fastq2fasta.pl, find_read_count.pl, geo2fasta.pl, get_mirdeep2_precursors.pl, illumina_to_fasta.pl, make_html.pl, make_html2.pl, mapper.pl, miRDeep2.pl, miRDeep2_core_algorithm.pl, mirdeep2bed.pl, parse_mappings.pl, perform_controls.pl, permute_structure.pl, prepare_signature.pl, quantifier.pl, randfold, remove_white_space_in_id.pl, revcomp, rna2dna.pl, samFLAGinfo.pl, sam_reads_collapse.pl, sanity_check_genome.pl, sanity_check_mapping_file.pl, sanity_check_mature_ref.pl, sanity_check_reads_ready_file.pl, select_for_randfold.pl, seqsplit, seqstat, sfetch, shuffle, sindex, sreformat, survey.pl, translate, weight, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold |
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GITHUB
|
quay.io/biocontainers/mirfix |
shpc-registry automated BioContainers addition for mirfix |
MIRfix.py, dialign2-2, runMIRfix.sh, testMIRfix.sh, RNAdos, x86_64-conda_cos7-linux-gnu-ld, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt |
|
GITHUB
|
quay.io/biocontainers/mirge-build |
shpc-registry automated BioContainers addition for mirge-build |
miRge-build, perl5.30.3, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect, f2py3.7 |
|
GITHUB
|
quay.io/biocontainers/mirge |
shpc-registry automated BioContainers addition for mirge |
|
|
GITHUB
|
quay.io/biocontainers/mirge3 |
shpc-registry automated BioContainers addition for mirge3 |
miRge3.0, RNAdos, x86_64-conda_cos7-linux-gnu-ld, cutadapt, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker |
|
GITHUB
|
quay.io/biocontainers/mirmachine |
shpc-registry automated BioContainers addition for mirmachine |
MirMachine.py, chronic, combine, errno, gff_sort_and_compete.sh, ifdata, ifne, isutf8, lckdo, mirmachine-tree-parser.py, mispipe, pee, sponge, ts, vidir, vipe, zrun, plac_runner.py, yte, cmark, pulptest, cbc, clp, cmalign, cmbuild, cmcalibrate, cmconvert |
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GITHUB
|
quay.io/biocontainers/mirnature |
shpc-registry automated BioContainers addition for mirnature |
MIRfix.py, dialign2-2, evaluate_conserved_str.py, miRNAnchor.pl, miRNAture, miRNAture.pl, runMIRfix.sh, testMIRfix.sh, rmblastn, clustalo, blast_report, blastdb_convert, blastdb_path, bl2seq, blastall, blastclust, blastpgp, copymat |
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GITHUB
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quay.io/biocontainers/mirtop |
shpc-registry automated BioContainers addition for mirtop |
mirtop, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed |
|
GITHUB
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quay.io/biocontainers/mirtrace |
shpc-registry automated BioContainers addition for mirtrace |
mirtrace, mirtrace.jar, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/miru-hero |
shpc-registry automated BioContainers addition for miru-hero |
MiruHero, CA.pm, cacert.pem, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras, pm-collect, readme.pdf |
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GITHUB
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quay.io/biocontainers/misopy |
shpc-registry automated BioContainers addition for misopy |
compare_miso, exon_utils, filter_events, index_gff, miso, miso_pack, miso_zip, module_availability, pe_utils, plot.py, run_events_analysis.py, run_miso.py, sam_to_bam, sashimi_plot, summarize_miso, test_miso, varfilter.py, qhelpconverter, f2py2, f2py2.7, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner, repc |
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GITHUB
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quay.io/biocontainers/mitgard |
shpc-registry automated BioContainers addition for mitgard |
MITGARD.py, PtR, RearrangementCheck.py, Trinity, TrinityStats.pl, Trinity_gene_splice_modeler.py, abundance_estimates_to_matrix.pl, align_and_estimate_abundance.pl, analyze_blastPlus_topHit_coverage.pl, analyze_diff_expr.pl, contig_ExN50_statistic.pl, define_clusters_by_cutting_tree.pl, extract_supertranscript_from_reference.py, filter_low_expr_transcripts.pl, get_Trinity_gene_to_trans_map.pl, insilico_read_normalization.pl, msa2consensus.py, retrieve_sequences_from_fasta.pl, run_DE_analysis.pl, run_DE_analysis_from_samples_file.pl, sam2msa.py, seqtk-trinity, sift_bam_max_cov.pl, salmon, jemalloc-config, jeprof, jemalloc.sh, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s |
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GITHUB
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quay.io/biocontainers/mitobim |
shpc-registry automated BioContainers addition for mitobim |
MITObim.pl, circules.py, downsample.py, fasta2frag.tcl, fixACE4consed.tcl, get_wiggle.pl, interleave-fastqgz-MITOBIM.py, mira, mirabait, miraconvert, miramem, parsort, perl5.32.0, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh |
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GITHUB
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quay.io/biocontainers/mitofinder |
shpc-registry automated BioContainers addition for mitofinder |
EukHighConfidenceFilter, FirstBuildChecker.py, Makefile, Makefile.am, Makefile.in, aclocal.bak, arwen, autoheader.bak, autom4te.bak, automake.bak, autoreconf.bak, autoscan.bak, autoupdate.bak, bazel-scan.py, circularizationCheck.py, covels-SE, coves-SE, eufindtRNA, export_mitochondrial_contigs.py, extract_genes.py, extract_seq.py, fa2fq, fa2fq.o, fasta2gsi, filter_blat, filter_blat.o, filter_contigs, filter_contigs.o, filterfa, filterfa.o, fq2fa, fq2fa.o, genbankOutput.py, geneChecker.py, geneChecker_fasta.py, geneChecker_fasta_gaps.py, idba, idba.o, idba_hybrid, idba_hybrid.o, idba_tran, idba_tran.o, idba_tran_test, idba_tran_test.o, idba_ud, idba_ud.o, ifnames.bak, mitofinder, parallel_blat, parallel_blat.o, parallel_rna_blat, parallel_rna_blat.o, print_graph, print_graph.o, raw_n50, raw_n50.o, rename_fasta_seqID.py, run-unittest.py, runIDBA.py, runMegahit.py, runMetaspades.py, sample_reads, sample_reads.o, scaffold, scaffold.o, scan.py, shuffle_reads, shuffle_reads.o, sim_reads, sim_reads.o, sim_reads_tran, sim_reads_tran.o, sort_gff.py, sort_psl, sort_psl.o, sort_reads, sort_reads.o, split_fa, split_fa.o, split_fq, split_fq.o, split_scaffold, split_scaffold.o, sstofa, tRNAscan-SE, tRNAscan-SE.conf, tRNAscanChecker.py, test.o, trnascan-1.4, validate_blat, validate_blat_parallel, validate_blat_parallel_local, validate_blat_parallel_rna, validate_component, validate_component.o, validate_contigs_blat, validate_contigs_blat.o, validate_contigs_mummer, validate_contigs_mummer.o, validate_mummer, validate_reads_blat, validate_reads_blat.o, validate_rna, validate_rna.o, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, megahit, megahit_toolkit, cds-mapping-stats, cds-subgraphs, mag-improve, spades-convert-bin-to-fasta, spades-gsimplifier |
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GITHUB
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quay.io/biocontainers/mitos |
shpc-registry automated BioContainers addition for mitos |
analyse.py, gcpp.py, geneorder.py, getfeatures.py, getinfo.py, plotprot.R, plotrna.R, plotstst.R, refseqsplit.py, runmitos.py, subseq.py, taxtree.py, update-blastdb.py, RNAfold, Kinfold, RNALfold, RNAaliduplex, RNAalifold, RNAcofold, RNAdistance, RNAduplex, RNAeval, RNAforester |
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GITHUB
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quay.io/biocontainers/mitoz |
singularity registry hpc automated addition for mitoz |
RNAmultifold, TMalign, attr, balsam, coronaspades.py, dba, dnal, dumpsexp, estwise, estwisedb, genewise, genewisedb, getfattr, gpg-error, gpgrt-config, hmac256, hmmc2, hmmerfm-exactmatch, jackd, lame, libgcrypt-config, lprodump, lrelease-pro, lupdate-pro, make_pscores.pl, meshdebug, metaplasmidspades.py, metaviralspades.py, mitoz, mitoz-tools, mpg123, mpg123-id3dump, mpg123-strip, mpicalc, orc-bugreport, orcc, out123, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, pl2bat.pl, poa, promoterwise, psw, pswdb, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, rnaviralspades.py, scanwise, scanwise_server, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, yat2m, clustalo, flac, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, circos, circos.exe, compile.bat, compile.make, fastp, gddiag, list.modules, megahit, megahit_toolkit |
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GITHUB
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quay.io/biocontainers/mixem |
shpc-registry automated BioContainers addition for mixem |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/mkdesigner |
singularity registry hpc automated addition for mkdesigner |
blastn_vdb, mkprimer, mkselect, mkvcf, tblastn_vdb, gatk, picard, test_pcre, gff2gff.py, jpackage, hb-info, f2py3.11, tjbench, cups-config, ippeveprinter, ipptool, guess-ploidy.py, plot-roh.py, run-roh.pl, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, color-chrs.pl, plot-vcfstats, align-columns, blst2tkns, csv2xml |
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GITHUB
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quay.io/biocontainers/mlgenotype |
singularity registry hpc automated addition for mlgenotype |
figure1calcs, rfmodelpredict, rfmodeltrain, rftrainpredict, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/mlpy |
shpc-registry automated BioContainers addition for mlpy |
f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
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quay.io/biocontainers/mlrho |
shpc-registry automated BioContainers addition for mlrho |
mlRho |
|
GITHUB
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quay.io/biocontainers/mlst-cge |
singularity registry hpc automated addition for mlst-cge |
download-db.sh, kma, kma_index, kma_shm, kma_update, mlst.py, tabulate, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl, sort-table, spdi2tbl, split-at-intron, tbl2xml, transmute.Linux |
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GITHUB
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quay.io/biocontainers/mlst |
shpc-registry automated BioContainers addition for mlst |
mlst, bp_pairwise_kaks.pl, bp_search2BSML.pl, bp_aacomp.pl, bp_biofetch_genbank_proxy.pl, bp_bioflat_index.pl, bp_biogetseq.pl, bp_blast2tree.pl, bp_bulk_load_gff.pl, bp_chaos_plot.pl, bp_classify_hits_kingdom.pl |
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GITHUB
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quay.io/biocontainers/mmannot |
singularity registry hpc automated addition for mmannot |
addNH, mmannot |
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GITHUB
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quay.io/biocontainers/mmlong2 |
singularity registry hpc automated addition for mmlong2 |
amr_report, amrfinder, amrfinder_index, amrfinder_update, bsmp2info, cnitool, dna_mutation, eido, fasta2parts, fasta_check, fasta_extract, fsa2xml, gbf2info, gff_check, just-top-hits, mksquashfs, mmlong2, mmlong2-lite-config.yaml, mmlong2-lite.smk, mmlong2-proc-config.yaml, mmlong2-proc.smk, pv, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex, rst2xml, run-singularity, scmp_sys_resolver, singularity, sqfscat, sqfstar, systematic-mutations, unsquashfs, zenodo_get, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gbf2fsa, gbf2ref, gm2ranges, gm2segs, ini2xml, jsonl2xml |
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GITHUB
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quay.io/biocontainers/mmquant |
shpc-registry automated BioContainers addition for mmquant |
mmquant |
|
GITHUB
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quay.io/biocontainers/mmseqs2-server |
singularity registry hpc automated addition for mmseqs2-server |
foldseek, mmseqs-server, gawk-5.3.0, gawkbug, aria2c, mmseqs, awk, gawk, idn2, wget |
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GITHUB
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quay.io/biocontainers/mmseqs2 |
shpc-registry automated BioContainers addition for mmseqs2 |
gawk-5.0.0, mmseqs, awk, gawk |
|
GITHUB
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quay.io/biocontainers/mmtf-python |
shpc-registry automated BioContainers addition for mmtf-python |
sample, easy_install-2.7, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5 |
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GITHUB
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quay.io/biocontainers/mmult |
shpc-registry automated BioContainers addition for mmult |
bbglm, cpgcdifenrich, cpgcdifenrichhist.R, vmcvmrnme, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis, ndmetis, 2to3-3.8, idle3.8, pydoc3.8, python3.8 |
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GITHUB
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quay.io/biocontainers/mmvc |
shpc-registry automated BioContainers addition for mmvc |
julia, julia-debug, mmvc, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis, ndmetis, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom |
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GITHUB
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quay.io/biocontainers/mnnpy |
shpc-registry automated BioContainers addition for mnnpy |
numba, pycc, natsort, f2py3.8, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif |
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GITHUB
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quay.io/biocontainers/moabs |
shpc-registry automated BioContainers addition for moabs |
bamsort.sh, bbf, bseqc2, bseqc2mbiasplot.R, bsmap, mcall, mcomp, moabs, numCI, pefilter, preprocess_novoalign.sh, redepth.pl, routines.pm, template_for_cfg, template_for_qsub, idn2, wget, samtools, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/mob_suite |
shpc-registry automated BioContainers addition for mob_suite |
attr, balsam, esdcompat, getfattr, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, lprodump, lrelease-pro, lupdate-pro, meshdebug, mob_cluster, mob_init, mob_recon, mob_typer, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set |
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GITHUB
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quay.io/biocontainers/mobidic-mpa |
shpc-registry automated BioContainers addition for mobidic-mpa |
mpa, mpa_main, tqdm, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
|
quay.io/biocontainers/mobster |
shpc-registry automated BioContainers addition for mobster |
MosaikAligner, MosaikBuild, MosaikJump, MosaikText, mobster, mobster-to-vcf, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/moca |
shpc-registry automated BioContainers addition for moca |
moca, coverage, intersection_matrix.py, intron_exon_reads.py, nosetests, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py |
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GITHUB
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quay.io/biocontainers/mockinbird |
shpc-registry automated BioContainers addition for mockinbird |
XXmotif, mb-adapter-clipper, mb-annotate-table, mb-bam-postprocess, mb-bsfinder, mb-calculate-posterior, mb-cap-occupancy, mb-create-bam-statistics, mb-extract-sites, mb-filter-sites, mb-generate-negative-set, mb-learn-mock, mb-mockinbird2table, mb-naive-bsfinder, mb-normalize, mb-pileup2sites, mb-plot-heatmap, mb-plot-heatmap-small, mb-plot-kmer-enrichment, mb-plot-kmer-logodds, mb-plot-metagene, mb-plot-metagene-nobs, mb-plot-transition-frequencies, mb-postprocess, mb-preprocess, mb-remove-duplicates, mb-site-merger, mb-softclip-analyzer, mb-table2fasta, mb-upgrade-table, mb-xxmotif, mockinbird, STAR, STARlong, jpackage, fastqc, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s |
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GITHUB
|
quay.io/biocontainers/modeltest-ng |
shpc-registry automated BioContainers addition for modeltest-ng |
modeltest-ng, modeltest-ng-mpi, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun |
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GITHUB
|
quay.io/biocontainers/modlamp |
shpc-registry automated BioContainers addition for modlamp |
example_descriptors.py, example_modlamp.py, my_print_defaults, mysql_config, perror, protoc, xslt-config, xsltproc, f2py3.8, chardetect, 2to3-3.8, idle3.8 |
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GITHUB
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quay.io/biocontainers/modle |
singularity registry hpc automated addition for modle |
modle, modle_tools |
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GITHUB
|
quay.io/biocontainers/mofapy |
shpc-registry automated BioContainers addition for mofapy |
f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, h5clear |
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GITHUB
|
quay.io/biocontainers/mofapy2 |
singularity registry hpc automated addition for mofapy2 |
h5tools_test_utils, h5fuse.sh, h5delete, natsort, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp, h5perf_serial, h5redeploy |
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GITHUB
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quay.io/biocontainers/moff |
shpc-registry automated BioContainers addition for moff |
aprofutil, csc, csi, illinkanalyzer, moff_all.py, mono-hang-watchdog, vbc, mono-package-runtime, sgen-grep-binprot, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr |
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GITHUB
|
quay.io/biocontainers/mokapot |
shpc-registry automated BioContainers addition for mokapot |
mokapot, triqler, xml2-config.bak, numba, pycc, fonttools, pyftmerge, pyftsubset, ttx, brotli, xslt-config, xsltproc |
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GITHUB
|
quay.io/biocontainers/molpopgen-analysis |
shpc-registry automated BioContainers addition for molpopgen-analysis |
Fexact, HBKpermute, MKtest, compute, descPoly, extractCoding, gestimator, kimura80, polydNdS, rsq, sharedPoly, snntest, translateCoding, htsfile, bgzip, tabix |
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GITHUB
|
quay.io/biocontainers/moments |
shpc-registry automated BioContainers addition for moments |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/moni |
singularity registry hpc automated addition for moni |
SlpEncBuild, bigbwt, bigrepair, build_seqidx, bwtparse, bwtparse64, compress_dictionary, despair, extend_ksw2, idespair, ipostproc, iprocdic, irepair, largeb_despair, largeb_idespair, largeb_irepair, largeb_repair, mems, moni, ms, newscan.x, newscanNT.x, pfbwt.x, pfbwt64.x, pfbwtNT.x, pfbwtNT64.x, pfp_thresholds, pfp_thresholds64, postproc, procdic, pscan.x, rlebwt_ms_build, simplebwt, simplebwt64, unparse, remap, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/mono |
shpc-registry automated BioContainers addition for mono |
mono, mono-api-html, mono-api-info, mono-boehm, mono-cil-strip, mono-configuration-crypto, mono-find-provides, mono-find-requires, mono-gdb.py, mono-heapviz, mono-service, mono-service2, mono-sgen, mono-sgen-gdb.py, mono-shlib-cop, mono-symbolicate, mono-test-install, mono-xmltool, monodis, monodocer, monodocs2html, monodocs2slashdoc, monolinker, monop, monop2, nunit-console, nunit-console2, nunit-console4, prj2make, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr, chktrust, crlupdate |
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GITHUB
|
quay.io/biocontainers/monocle3-cli |
shpc-registry automated BioContainers addition for monocle3-cli |
gdalserver, monocle3, testepsg, pg_standby, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pdfattach, applygeo, geotifcp, gnmanalyse, gnmmanage |
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GITHUB
|
quay.io/biocontainers/monopogen |
singularity registry hpc automated addition for monopogen |
annot-tsv, beagle, jwebserver, gff2gff.py, jpackage, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, cups-config, ippeveprinter, ipptool, bcftools, vcfutils.pl, hb-info, fasta-sanitize.pl, plot-ampliconstats, tjbench, jfr, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver |
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GITHUB
|
quay.io/biocontainers/monovar |
shpc-registry automated BioContainers addition for monovar |
monovar, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
|
quay.io/biocontainers/monsda |
singularity registry hpc automated addition for monsda |
bsdcat, bsdcpio, bsdtar, conda2solv, dumpsolv, installcheck, mamba, mamba-package, mergesolv, monsda, monsda_configure, nextflow, nextflow.bak, repo2solv, testsolv, versioneer, stone, conda-env, cph, egrep, fgrep, grep, plac_runner.py, yte, pulptest, cbc, clp, basenc, b2sum, snakemake, snakemake-bash-completion, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum |
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GITHUB
|
quay.io/biocontainers/moods |
shpc-registry automated BioContainers addition for moods |
ccache-swig, moods-dna.py, swig, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
|
quay.io/biocontainers/mordred |
shpc-registry automated BioContainers addition for mordred |
f2py3.6, tqdm, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
|
quay.io/biocontainers/moreutils |
shpc-registry automated BioContainers addition for moreutils |
chronic, combine, errno, ifdata, ifne, isutf8, lckdo, mispipe, pee, sponge, ts, vidir, vipe, zrun |
|
GITHUB
|
quay.io/biocontainers/mosaicatcher |
singularity registry hpc automated addition for mosaicatcher |
mosaicatcher, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/mosaik |
shpc-registry automated BioContainers addition for mosaik |
MosaikAligner, MosaikBuild, MosaikJump, MosaikText |
|
GITHUB
|
quay.io/biocontainers/mosca |
shpc-registry automated BioContainers addition for mosca |
Contents.xsd, DefaultMassCal.xsd, Devices.xsd, FragGeneScan, KEGGCharter_prokaryotic_maps.txt, MSActualDefs.xsd, MSScan_XSpecific.xsd, MSTS.xsd, MSTS_XSpecific.xsd, Makefile, Makefile.am, Makefile.in, MaxQuantCmd.exe, MaxQuantGui.exe, MaxQuantServer.exe, MaxQuantTask.exe, MqparConverter.exe, MsLibTask.exe, NumPluginXgboost.exe, Sciex.Data.Processing.DLL, aclocal.bak, add_metadata_tree.py, apr-1-config, apriconv, apu-1-config, autoheader.bak, autom4te.bak, automake.bak, autoreconf.bak, autoscan.bak, autoupdate.bak, bazel-scan.py, breadth_depth.py, checkm, consensus.py, consensus_aDNA.py, csc, csc-dim, csi, extract_markers.py, fa2fq, fa2fq.o, filter_blat, filter_blat.o, filter_contigs, filter_contigs.o, filterfa, filterfa.o, fq2fa, fq2fa.o, htseq-count-barcodes, icarus.py, idba, idba.o, idba_hybrid, idba_hybrid.o, idba_tran, idba_tran.o, idba_tran_test, idba_tran_test.o, idba_ud, idba_ud.o, ifnames.bak, illinkanalyzer, indexdb_rna, kegg_charter.py, kegg_pathway_map.py, ktClassifyHits, ktImportHits, maxquant, merge-paired-reads.sh, merge_metaphlan_tables.py, metaphlan, metaquast, metaquast.py, monograph, mosca.py, nunit-console, nunit-console2, nunit-console4, parallel_blat, parallel_blat.o, parallel_rna_blat, parallel_rna_blat.o, peptide-shaker, phylophlan, phylophlan_draw_metagenomic, phylophlan_get_reference, phylophlan_metagenomic, phylophlan_setup_database, phylophlan_strain_finder, phylophlan_write_config_file, phylophlan_write_default_configs.sh, plot_tree_graphlan.py, poly.py, polymut.py, print_graph, print_graph.o, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, raw_n50, raw_n50.o, read_fastx.py, recognizer.py, run-unittest.py, run_FragGeneScan.pl, run_MaxBin.pl, sample2markers.py, sample_reads, sample_reads.o, scaffold, scaffold.o, scan.py, searchgui, shuffle_reads, shuffle_reads.o, sim_reads, sim_reads.o, sim_reads_tran, sim_reads_tran.o, sort_psl, sort_psl.o, sort_reads, sort_reads.o, sortmerna, split_fa, split_fa.o, split_fq, split_fq.o, split_scaffold, split_scaffold.o, strain_transmission.py, strainphlan, svn, svnadmin, svnbench, svndumpfilter, svnfsfs, svnlook, svnmucc, svnrdump, svnserve, svnsync, svnversion, test.o, uniprot_support.py, unmerge-paired-reads.sh, upimapi.py, validate_blat, validate_blat_parallel, validate_blat_parallel_local, validate_blat_parallel_rna, validate_component, validate_component.o, validate_contigs_blat, validate_contigs_blat.o, validate_contigs_mummer, validate_contigs_mummer.o, validate_mummer, validate_reads_blat, validate_reads_blat.o, validate_rna, validate_rna.o, vbc, mono-package-runtime, readal, sgen-grep-binprot, statal, trimal, al, al2, caspol, cccheck, ccrewrite |
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GITHUB
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quay.io/biocontainers/mosdepth |
shpc-registry automated BioContainers addition for mosdepth |
mosdepth, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/moss |
shpc-registry automated BioContainers addition for moss |
moss, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/mothur |
shpc-registry automated BioContainers addition for mothur |
abi-dump.2.9.6, align-info.2.9.6, bam-load.2.9.6, cache-mgr.2.9.6, cg-load.2.9.6, fasterq-dump.2.9.6, fastq-dump.2.9.6, illumina-dump.2.9.6, kar.2.9.6, kdbmeta.2.9.6, kget.2.9.6, latf-load.2.9.6, mothur, prefetch.2.9.6, rcexplain.2.9.6, sam-dump.2.9.6, sff-dump.2.9.6, sra-pileup.2.9.6, sra-sort.2.9.6, sra-stat.2.9.6, srapath.2.9.6, test-sra.2.9.6, uchime, vdb-config.2.9.6, vdb-copy.2.9.6, vdb-decrypt.2.9.6, vdb-dump.2.9.6, vdb-encrypt.2.9.6, vdb-lock.2.9.6, vdb-passwd.2.9.6, vdb-unlock.2.9.6, vdb-validate.2.9.6, abi-dump.2, align-info.2, bam-load.2, cache-mgr.2, cg-load.2, fasterq-dump.2, fastq-dump.2, illumina-dump.2, kar.2, kdbmeta.2 |
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GITHUB
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quay.io/biocontainers/motifraptor |
shpc-registry automated BioContainers addition for motifraptor |
MotifRaptor, f2py3.6, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools |
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GITHUB
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quay.io/biocontainers/motifscan |
shpc-registry automated BioContainers addition for motifscan |
motifscan, fonttools, pyftmerge, pyftsubset, ttx, normalizer, tqdm, brotli, f2py3.8, img2webp, cwebp |
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GITHUB
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quay.io/biocontainers/motulizer |
shpc-registry automated BioContainers addition for motulizer |
anvi-script-compute-bayesian-pan-core, mOTUconvert.py, mOTUlize.py, mOTUpan.py, fastANI, mmseqs, igraph, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl |
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GITHUB
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quay.io/biocontainers/motus |
shpc-registry automated BioContainers addition for motus |
metaSNV.py, metaSNV_post.py, motus, qualfa2fq.pl, xa2multi.pl, bwa, fasta-sanitize.pl, plot-ampliconstats, f2py3.9, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl |
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GITHUB
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quay.io/biocontainers/mp-est |
singularity registry hpc automated addition for mp-est |
mpest |
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GITHUB
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quay.io/biocontainers/mp3treesim |
shpc-registry automated BioContainers addition for mp3treesim |
mp3treesim, cxpm, sxpm, acyclic, bcomps, ccomps, circo, dijkstra, dot, dot2gxl, dot_builtins |
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GITHUB
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quay.io/biocontainers/mpa-portable |
shpc-registry automated BioContainers addition for mpa-portable |
comet, comet.exe, mpa-portable, xtandem, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/mpa-server |
shpc-registry automated BioContainers addition for mpa-server |
cpp, innochecksum, lz4_decompress, mpa-server, myisam_ftdump, myisamchk, myisamlog, myisampack, mysql, mysql.server, mysql_client_test, mysql_client_test_embedded, mysql_config_editor, mysql_embedded, mysql_install_db, mysql_plugin, mysql_secure_installation, mysql_ssl_rsa_setup, mysql_tzinfo_to_sql, mysql_upgrade, mysqladmin, mysqlbinlog, mysqlcheck, mysqld, mysqld_multi, mysqld_safe, mysqldump, mysqldumpslow, mysqlimport, mysqlpump, mysqlshow, mysqlslap, mysqltest, mysqltest_embedded, mysqlxtest, replace, resolve_stack_dump, resolveip, zlib_decompress, clhsdb, hsdb, perl5.32.0, my_print_defaults, mysql_config, perror, extcheck, java-rmi.cgi, javah, jhat |
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GITHUB
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quay.io/biocontainers/mpra-data-access-portal |
shpc-registry automated BioContainers addition for mpra-data-access-portal |
mpra-data-access-portal, phantomjs, x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/mqc |
shpc-registry automated BioContainers addition for mqc |
counts_in_region, crossmap, cs, fasta_clipping_histogram.pl, fasta_formatter, fasta_nucleotide_changer, fastq_masker, fastq_quality_boxplot_graph.sh, fastq_quality_converter, fastq_quality_filter, fastq_quality_trimmer, fastq_to_fasta, fastx_artifacts_filter, fastx_barcode_splitter.pl, fastx_clipper, fastx_collapser, fastx_nucleotide_distribution_graph.sh, fastx_nucleotide_distribution_line_graph.sh, fastx_quality_stats, fastx_renamer, fastx_reverse_complement, fastx_trimmer, fastx_uncollapser, findjuncs, get_count_vectors, gff_parent_types, innochecksum, mQC.pl, make_wiggle, metagene, msql2mysql, myisam_ftdump, myisamchk, myisamlog, myisampack, mysql, mysql_client_test, mysql_convert_table_format, mysql_find_rows, mysql_fix_extensions, mysql_plugin, mysql_secure_installation, mysql_setpermission, mysql_tzinfo_to_sql, mysql_upgrade, mysql_waitpid, mysql_zap, mysqlaccess, mysqlaccess.conf, mysqladmin, mysqlbinlog, mysqlbug, mysqlcheck, mysqld, mysqld_multi, mysqld_safe, mysqldump, mysqldumpslow, mysqlhotcopy, mysqlimport, mysqlshow, mysqlslap, mysqltest, phase_by_size, psite, reformat_transcripts, replace, resolve_stack_dump, resolveip, slidejuncs, test_table_equality, bedToBigBed, enhancer.py, explode.py, gifmaker.py, painter.py, player.py, thresholder.py, viewer.py, pilconvert.py, pildriver.py |
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GITHUB
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quay.io/biocontainers/mquad |
singularity registry hpc automated addition for mquad |
GTbarcode, mquad, vireo, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fonttools, pyftmerge, pyftsubset, ttx, tjbench, brotli, opj_compress, opj_decompress, opj_dump |
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GITHUB
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quay.io/biocontainers/mrbayes |
shpc-registry automated BioContainers addition for mrbayes |
mb, mb-mpi, giffilter, gifsponge, gifecho, gifinto, aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info |
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GITHUB
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quay.io/biocontainers/mreps |
shpc-registry automated BioContainers addition for mreps |
mreps |
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GITHUB
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quay.io/biocontainers/mrsfast |
shpc-registry automated BioContainers addition for mrsfast |
mrsfast |
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GITHUB
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quay.io/biocontainers/ms-entropy |
singularity registry hpc automated addition for ms-entropy |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/ms |
shpc-registry automated BioContainers addition for ms |
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GITHUB
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quay.io/biocontainers/ms2deepscore |
singularity registry hpc automated addition for ms2deepscore |
flatc, h5delete, import_pb_to_tensorboard, estimator_ckpt_converter, aec, tjbench, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, markdown_py, numba, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub |
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GITHUB
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quay.io/biocontainers/ms2pip |
shpc-registry automated BioContainers addition for ms2pip |
fasta2speclib, ms2pip, ms2pip-single-prediction, xgboost, pt2to3, ptdump, ptrepack, pttree, numba, pycc, mirror_server, mirror_server_stop, jsonschema |
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GITHUB
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quay.io/biocontainers/ms2query |
singularity registry hpc automated addition for ms2query |
backend-test-tools, check-model, check-node, community, ms2query, onnxruntime_test, h5delete, isympy, import_pb_to_tensorboard, estimator_ckpt_converter, aec, google-oauthlib-tool, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, coloredlogs, tensorboard, humanfriendly, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, markdown_py, numba, pyrsa-decrypt, pyrsa-encrypt |
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GITHUB
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quay.io/biocontainers/ms2rescore-rs |
singularity registry hpc automated addition for ms2rescore-rs |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/ms2rescore |
singularity registry hpc automated addition for ms2rescore |
cpuinfo, deeplc, deeplc-gui, fasta2speclib, flatc, h5fuse.sh, helpviewer, img2png, img2py, img2xpm, mokapot, ms2pip, ms2rescore, ms2rescore-gui, ms2rescore-report, psm-utils, psm_utils, pycrust, pyshell, pyslices, pyslicesshell, pywxrc, triqler, wx-config, wxdemo, wxdocs, wxget, wxrc, wxrc-3.1, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, elasticurl, elasticurl_cpp, elastipubsub, xgboost, import_pb_to_tensorboard, plasma-store-server, plasma_store, csv-import, markdown-it, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, h5delete, gflags_completions.sh, estimator_ckpt_converter |
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GITHUB
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quay.io/biocontainers/msa4u |
singularity registry hpc automated addition for msa4u |
msa4u, numpy-config, chardetect, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tjbench, opj_compress, opj_decompress, opj_dump |
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GITHUB
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quay.io/biocontainers/msaboot |
shpc-registry automated BioContainers addition for msaboot |
msaboot, sample, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, ncurses5-config |
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GITHUB
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quay.io/biocontainers/msaconverter |
shpc-registry automated BioContainers addition for msaconverter |
msaconverter, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/msalign2 |
shpc-registry automated BioContainers addition for msalign2 |
msalign2, bdftogd, gd2copypal, gd2togif, gd2topng, gdcmpgif, gdparttopng, gdtopng, giftogd2, pngtogd, pngtogd2 |
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GITHUB
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quay.io/biocontainers/msamtools |
shpc-registry automated BioContainers addition for msamtools |
msamtools |
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GITHUB
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quay.io/biocontainers/msaprobs |
shpc-registry automated BioContainers addition for msaprobs |
msaprobs |
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GITHUB
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quay.io/biocontainers/mseqtools |
shpc-registry automated BioContainers addition for mseqtools |
gunzip, gzexe, gzip, mseqtools, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zless, zmore, znew |
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GITHUB
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quay.io/biocontainers/msfragger |
singularity registry hpc automated addition for msfragger |
csc-dim, monograph, msfragger, nunit-console, nunit-console2, nunit-console4, csc, csi, illinkanalyzer, vbc, mono-package-runtime, sgen-grep-binprot, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr, chktrust, crlupdate, csharp, dmcs, dtd2rng, dtd2xsd, gacutil, gacutil2, genxs, httpcfg, ikdasm |
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GITHUB
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quay.io/biocontainers/msgf_plus |
shpc-registry automated BioContainers addition for msgf_plus |
msgf_plus, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
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GITHUB
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quay.io/biocontainers/msi |
shpc-registry automated BioContainers addition for msi |
bam2fastq, bam_add_tags, bam_annotate.sh, bam_umi_count, fastq2bam, fastq_filter_n, fastq_filterpair, fastq_info, fastq_not_empty, fastq_num_reads, fastq_pre_barcodes, fastq_split_interleaved, fastq_tests, fastq_trim_poly_at, fastq_truncate, fastq_validator.sh, isONclust, metabin, metabinkit_blast, metabinkit_blastgendb, metabinkit_shared.sh, msi, msi_cluster2reads, msi_clustr2map.pl, msi_clustr_add_size.pl, msi_display_report, msi_docker, msi_fastq_stats.sh, msi_incremental.sh, msi_install.sh, msi_rename_columns.sh, msi_res2taxatable, msi_shared.sh, msi_tidyup_results, msi_tidyup_table, msi_time_it, taxonkit, taxonkit_children.sh, filter-table, spdi2prod, _bdftogd, _gd2copypal, _gd2togif, _gd2topng, _gdcmpgif, _gdparttopng, _gdtopng, _giftogd2 |
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GITHUB
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quay.io/biocontainers/msisensor-pro |
shpc-registry automated BioContainers addition for msisensor-pro |
msisensor-pro, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/msisensor-rna |
singularity registry hpc automated addition for msisensor-rna |
msisensor-rna, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/msisensor |
shpc-registry automated BioContainers addition for msisensor |
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GITHUB
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quay.io/biocontainers/msisensor2 |
shpc-registry automated BioContainers addition for msisensor2 |
msisensor2 |
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GITHUB
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quay.io/biocontainers/msmc2 |
singularity registry hpc automated addition for msmc2 |
msmc2_Linux |
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GITHUB
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quay.io/biocontainers/msmetaenhancer |
shpc-registry automated BioContainers addition for msmetaenhancer |
xml2-config.bak, tabulate, numba, pycc, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli |
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GITHUB
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quay.io/biocontainers/msms |
shpc-registry automated BioContainers addition for msms |
msms, pdb_to_xyzr, pdb_to_xyzrn |
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GITHUB
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quay.io/biocontainers/msp2db |
shpc-registry automated BioContainers addition for msp2db |
msp2db, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/msprime |
shpc-registry automated BioContainers addition for msprime |
2to3-3.4, easy_install-3.4, idle3.4, msp, mspms, pydoc3.4, python3.4, python3.4-config, python3.4m, python3.4m-config, pyvenv-3.4, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp |
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GITHUB
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quay.io/biocontainers/msproteomicstools |
shpc-registry automated BioContainers addition for msproteomicstools |
AlignmentGUI.py, MSE2mzML.py, MSE_split.py, NISTParser.py, ProtFDRTraML2Fasta.py, ProtFDRmProphet2Mayu.py, TAPIR.py, add_protein_annotation.py, compute_full_matrix.py, convertFromPeakview.py, convertMassLynxTomzML.py, convertNISTLibraryToTSV.py, copy_accesion.py, count_pep_prot.py, dsdp5, extract_matrix.py, fdr_cutoff.py, feature_alignment.py, featurealigner2msstats.py, filterChrom.py, filterPeakview.py, filterSqMass.py, fix_sonar.py, fix_swath_windows.py, makeSwathFile.py, mergeSqMass.py, pepxml2csv.py, pepxml2csv_simple.py, plot_alignment_tree.py, preprocess_peakview.py, proteinDBmasses.py, proteinDigest.py, proteins_not_in_library.py, pseudoreverseDB.py, requantAlignedValues.py, spectrast2spectrast_irt.py, spectrast2tsv.py, spectrast_cluster.py, spectrast_updateiRTs.py, splitMSE.py, split_mzXML_intoSwath.py, tmp.py, trafoXML_visualize.py, tsv2spectrast.py, vba_extract.py, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis, ndmetis, glpsol, fftw-wisdom, fftw-wisdom-to-conf |
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GITHUB
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quay.io/biocontainers/msstitch |
shpc-registry automated BioContainers addition for msstitch |
msstitch, xslt-config, xsltproc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/msweep |
singularity registry hpc automated addition for msweep |
mSWEEP |
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GITHUB
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quay.io/biocontainers/mtb-snp-it |
shpc-registry automated BioContainers addition for mtb-snp-it |
snpit-run.py, vcf_sample_filter.py, vcf_filter.py, vcf_melt, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/mtbseq |
shpc-registry automated BioContainers addition for mtbseq |
GenomeAnalysisTK, MTBseq, gatk3, picard, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool |
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GITHUB
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quay.io/biocontainers/mtglink |
shpc-registry automated BioContainers addition for mtglink |
LRez, MindTheGap, ProgDynOptim.py, barcodesExtraction.py, bed2gfa.py, dbgh5, dbginfo, fasta2bed.py, gapFilling.py, gfa1tofasta.py, gfa2tofasta.py, gfapy-convert, gfapy-mergelinear, gfapy-renumber, gfapy-validate, helpers.py, localAssemblyDBG.py, localAssemblyIRO.py, main.py, matrix2gfa.py, mergegfa.py, mtglink.py, pathos_connect, paths2gfa.py, portpicker, pox, ppserver, qualitativeEvaluation.py, readsRetrieval.py, stats_alignment.py, test.py, vcf2gfa.py, get_objgraph, undill, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems |
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GITHUB
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quay.io/biocontainers/mtgrasp |
singularity registry hpc automated addition for mtgrasp |
abyss-rresolver-short, analyse.py, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, drawmitos.py, ds2pme, eido, fadvise, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gbf2fsa, gbf2ref, gcpp.py, geneorder.py, getfeatures.py, getinfo.py, gm2ranges, gm2segs, ini2xml, irqtop, jsonl2xml, just-first-key, lsirq, mtgrasp.py, mtgrasp.smk, mtgrasp_abyss_mergepairs.sh, mtgrasp_add_flanks.py, mtgrasp_blast_best-hit.py, mtgrasp_check_filled_add_flanks.py, mtgrasp_cleanup.sh, mtgrasp_create_references_for_ntjoin.py, mtgrasp_end_recover.py, mtgrasp_extract_tsv_value.py, mtgrasp_overlap_check.py, mtgrasp_run_ntjoin.sh, mtgrasp_standardize.py, mtgrasp_summarize.py, nhance.sh, nsenter, ntJoin, ntcard, nthll, pipesz, plotprot.R, plotrna.R, plotstst.R, pma2apa, pma2pme, pmc2bioc, pmc2info, prlimit, protoc-25.3.0, quote-grouped-elements, ref2pmid, refseq-nm-cds, refseqsplit.py, runmitos.py, scn2xml, stream-local, sub_then_run_mtgrasp.sh, subseq.py, taxtree.py, test-pmc-index, toml2xml, uclampset, update-blastdb.py, yaml2xml, abyss-stack-size, scriptlive, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject, fallocate, fincore, findmnt, getopt, hardlink, hexdump, i386, ionice, ipcmk, ipcrm, ipcs, isosize, last |
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GITHUB
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quay.io/biocontainers/mtnucratio |
shpc-registry automated BioContainers addition for mtnucratio |
mtnucratio, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/mtsv-tools |
shpc-registry automated BioContainers addition for mtsv-tools |
mtsv-binner, mtsv-build, mtsv-chunk, mtsv-collapse, mtsv-collapse-old, mtsv-readprep |
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GITHUB
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quay.io/biocontainers/mtsv |
shpc-registry automated BioContainers addition for mtsv |
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GITHUB
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quay.io/biocontainers/mudirac |
singularity registry hpc automated addition for mudirac |
mudirac |
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GITHUB
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quay.io/biocontainers/mudskipper |
singularity registry hpc automated addition for mudskipper |
mudskipper |
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GITHUB
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quay.io/biocontainers/mugsy |
shpc-registry automated BioContainers addition for mugsy |
delta-dups.sh, fixMAFnames.pl, maf2fasta.pl, mugsy, mugsyWGA, mugsyenv.sh, plot.pl, splitmaf.pl, synchain-mugsy, xmfa2maf.pl, perl5.32.0, build_env_setup.sh, conda_build.sh, streamzip |
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GITHUB
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quay.io/biocontainers/multigps |
shpc-registry automated BioContainers addition for multigps |
multigps, xsltproc_lite, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip |
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GITHUB
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quay.io/biocontainers/multiprocess |
shpc-registry automated BioContainers addition for multiprocess |
get_objgraph.py, unpickle.py, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/multiqc-bcbio |
shpc-registry automated BioContainers addition for multiqc-bcbio |
multiqc, coloredlogs, humanfriendly, markdown_py, futurize, pasteurize, chardetect, f2py3.9, 2to3-3.9, idle3.9 |
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GITHUB
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quay.io/biocontainers/multiqc |
shpc-registry automated BioContainers addition for multiqc |
multiqc |
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GITHUB
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quay.io/biocontainers/multiqc_sav |
shpc-registry automated BioContainers addition for multiqc_sav |
interop_aggregate, interop_dumpbin, interop_dumptext, interop_imaging_table, interop_index-summary, interop_plot_by_cycle, interop_plot_by_lane, interop_plot_flowcell, interop_plot_qscore_heatmap, interop_plot_qscore_histogram, interop_plot_sample_qc, interop_summary, multiqc, cmark, coloredlogs, humanfriendly, markdown_py, pygmentize, fonttools, pyftmerge, pyftsubset, ttx |
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GITHUB
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quay.io/biocontainers/multirnafold |
singularity registry hpc automated addition for multirnafold |
feature_description, multifold, pairfold, pairfold-web, simfold, simfold_pf |
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GITHUB
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quay.io/biocontainers/multisub |
singularity registry hpc automated addition for multisub |
multiSub, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/multitax |
shpc-registry automated BioContainers addition for multitax |
2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/multivcfanalyzer |
shpc-registry automated BioContainers addition for multivcfanalyzer |
multivcfanalyzer, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/multivelo |
singularity registry hpc automated addition for multivelo |
loompy, jupyter-execute, jupyter-dejavu, send2trash, scanpy, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, jupyter-kernel, jupyter-kernelspec, jupyter-run, pybabel, curve_keygen, ipython3, ipython, numba, pycc, jupyter-trust, natsort, jupyter |
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GITHUB
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quay.io/biocontainers/multixrank |
singularity registry hpc automated addition for multixrank |
f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, normalizer, python3.1 |
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GITHUB
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quay.io/biocontainers/multiz |
shpc-registry automated BioContainers addition for multiz |
all_bz, blastzWrapper, get_covered, get_standard_headers, lav2maf, maf2fasta, maf2lav, mafFind, maf_checkThread, maf_order, maf_project, maf_sort, multic, multiz, pair2tb, roast, single_cov2, tba |
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GITHUB
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quay.io/biocontainers/mummer |
shpc-registry automated BioContainers addition for mummer |
mummer |
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GITHUB
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quay.io/biocontainers/mummer2circos |
singularity registry hpc automated addition for mummer2circos |
mummer2circos, circos, circos.exe, compile.bat, compile.make, gddiag, list.modules, test.modules, mapview, mgaps, run-mummer1, run-mummer3, gdlib-config, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot, nucmer, promer, repeat-match, show-aligns, show-coords, show-diff, show-snps |
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GITHUB
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quay.io/biocontainers/mummer4 |
shpc-registry automated BioContainers addition for mummer4 |
delta2vcf, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot, nucmer, promer, repeat-match, show-aligns |
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GITHUB
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quay.io/biocontainers/munkres |
shpc-registry automated BioContainers addition for munkres |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/mupbwt |
singularity registry hpc automated addition for mupbwt |
mupbwt, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/muscle |
shpc-registry automated BioContainers addition for muscle |
muscle |
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GITHUB
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quay.io/biocontainers/muse |
shpc-registry automated BioContainers addition for muse |
MuSE |
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GITHUB
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quay.io/biocontainers/music-deconvolution |
shpc-registry automated BioContainers addition for music-deconvolution |
gio-launch-desktop, c89, c99 |
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GITHUB
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quay.io/biocontainers/music |
shpc-registry automated BioContainers addition for music |
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GITHUB
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quay.io/biocontainers/musicc |
shpc-registry automated BioContainers addition for musicc |
run_musicc.py, test_musicc.py, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
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quay.io/biocontainers/muspinsim |
shpc-registry automated BioContainers addition for muspinsim |
ase, ase-build, ase-db, ase-gui, ase-info, ase-run, magresaverage, muspinsim, muspinsim.mpi, phylogen, soprano_submitter, vasp2cell, flask, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp |
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GITHUB
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quay.io/biocontainers/mustang |
shpc-registry automated BioContainers addition for mustang |
mustang |
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GITHUB
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quay.io/biocontainers/mutamr |
singularity registry hpc automated addition for mutamr |
delly, mutamr, vcfnullgenofields, vcfwave, split_ref_by_bai_datasize.py, sam_add_rg.pl, update_version.sh, samclip, snpEff, tabix++, bamleftalign, coverage_to_regions.py, fasta_generate_regions.py, freebayes-parallel, generate_freebayes_region_scripts.sh, freebayes, abba-baba, bFst, bed2region, bgziptabix, dumpContigsFromHeader, genotypeSummary, hapLrt, iHS, meltEHH, normalize-iHS, pFst, pVst, permuteGPAT++ |
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GITHUB
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quay.io/biocontainers/mutmap |
shpc-registry automated BioContainers addition for mutmap |
mutmap, mutplot, snpEff, trimmomatic, gff2gff.py, qualfa2fq.pl, xa2multi.pl, bwa, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl |
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GITHUB
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quay.io/biocontainers/mutscan |
shpc-registry automated BioContainers addition for mutscan |
mutscan |
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GITHUB
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quay.io/biocontainers/mutyper |
singularity registry hpc automated addition for mutyper |
mutyper, cyvcf2, annot-tsv, numpy-config, coloredlogs, vcf_sample_filter.py, vcf_filter.py, vcf_melt, humanfriendly, faidx, htsfile, bgzip, tabix, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/mvicuna |
shpc-registry automated BioContainers addition for mvicuna |
mvicuna |
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GITHUB
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quay.io/biocontainers/mvip |
singularity registry hpc automated addition for mvip |
alternative_bins_to_fasta.py, bin_coverage.py, bowtie2_stuff.py, bsmp2info, bwa_stuff.py, checkv, codon_stuff.py, codon_stuff_threader.py, coverage_stuff.py, coverage_stuff_threader.py, coverage_table_convert.py, coverm, dashing, derep_stuff.py, distance_stuff.py, dos2unix, extract_stuff.py, extract_unbinned_sequences.py, flag_circular.py, flit, fsa2xml, gbf2info, generate_bin_scores.py, genomad, just-top-hits, kmer_nt_stuff.py, kmer_nt_stuff_threader.py, linclust_stuff.py, link_bin_sequences.py, mac2unix, machine_stuff.py, mvip, network_stuff_threader.py, prodigal-gv, prodigal_stuff.py, read_nt_stuff.py, sam_stuff.py, save_dist_dicts.py, score_stuff.py, sequence_lengths_of_bins.py, strobealign, systematic-mutations, table2asn, test_vRhyme.py, unix2dos, unix2mac, vRhyme, flatc, starcode, readal, rich-click, statal, trimal, aria2c, gawk-5.3.0, gawkbug, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc |
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GITHUB
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quay.io/biocontainers/mvirs |
singularity registry hpc automated addition for mvirs |
mvirs, qualfa2fq.pl, xa2multi.pl, bwa, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim, wgsim_eval.pl, samtools |
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GITHUB
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quay.io/biocontainers/mvp |
shpc-registry automated BioContainers addition for mvp |
mvp, sample, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, guess-ploidy.py |
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GITHUB
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quay.io/biocontainers/mwga-utils |
shpc-registry automated BioContainers addition for mwga-utils |
metrics, missing_regions, single_cov, stats |
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GITHUB
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quay.io/biocontainers/mycotools |
singularity registry hpc automated addition for mycotools |
acc2fa, acc2gbk, acc2gff, acc2locus, add2gff, annotationStats, assemblyStats, bioreform, bsmp2info, coords2fa, crap, db2files, db2hgs, db2microsyntree, db2search, extract_mtdb, fa2clus, fa2hmmer2fa, fa2mass, fa2tree, fna2faa, fsa2xml, gbf2info, gff2seq, gff2svg, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, jgiDwnld, just-top-hits, manage_mtdb, mtdb, ncbiAcc2fa, ncbiDwnld, ome2name, predb2mtdb, s2subs, systematic-mutations, update_mtdb, iqtree2, gawk-5.3.0, gawkbug, aria2c, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gbf2fsa, gbf2ref |
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GITHUB
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quay.io/biocontainers/mydbfinder |
singularity registry hpc automated addition for mydbfinder |
curate_database.py, kma, kma_index, kma_shm, kma_update, mydbfinder.py, tabulate, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl, sort-table, spdi2tbl, split-at-intron, tbl2xml, transmute.Linux |
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GITHUB
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quay.io/biocontainers/mygene |
shpc-registry automated BioContainers addition for mygene |
chardetect, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/mykatlas |
shpc-registry automated BioContainers addition for mykatlas |
atlas, mccortex31, vcf_sample_filter.py, vcf_filter.py, vcf_melt, f2py2, f2py2.7, futurize, pasteurize, python2-config, python2.7-config, python2 |
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GITHUB
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quay.io/biocontainers/mykrobe |
shpc-registry automated BioContainers addition for mykrobe |
install_compass, mongo, mongod, mongos, mykrobe, vcf_sample_filter.py, vcf_filter.py, vcf_melt, idn2, f2py3.8, chardetect, wget, 2to3-3.8, idle3.8, pydoc3.8 |
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GITHUB
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quay.io/biocontainers/myriad |
shpc-registry automated BioContainers addition for myriad |
myriad, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/mysql-connector-c |
shpc-registry automated BioContainers addition for mysql-connector-c |
my_print_defaults, mysql_config, perror |
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GITHUB
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quay.io/biocontainers/mysqlclient |
shpc-registry automated BioContainers addition for mysqlclient |
easy_install-2.7, my_print_defaults, mysql_config, perror, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/mzmine |
singularity registry hpc automated addition for mzmine |
MZmine, MZmine.bat, hb-info, jwebserver, mzmine, tjbench, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo, jmap |
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GITHUB
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quay.io/biocontainers/mzml2isa |
shpc-registry automated BioContainers addition for mzml2isa |
mzml2isa, pronto, xslt-config, xsltproc, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/mzpaf |
singularity registry hpc automated addition for mzpaf |
idle3.13, pydoc3.13, python3.13, python3.13-config, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, xslt-config, xsltproc, fonttools, pyftmerge, pyftsubset, ttx, brotli, tjbench, opj_compress, opj_decompress, opj_dump |
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GITHUB
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quay.io/biocontainers/mzspeclib |
singularity registry hpc automated addition for mzspeclib |
mzspeclib, idle3.13, pydoc3.13, python3.13, python3.13-config, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, xslt-config, xsltproc, fonttools, pyftmerge, pyftsubset, ttx, brotli, tjbench, opj_compress, opj_decompress, opj_dump |
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GITHUB
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quay.io/biocontainers/mztosqlite |
shpc-registry automated BioContainers addition for mztosqlite |
mz_to_sqlite, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink |
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GITHUB
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quay.io/biocontainers/n50 |
shpc-registry automated BioContainers addition for n50 |
fqc, fqlen.pl, fu-cat, fu-compare, fu-count, fu-extract, fu-grep, fu-hash, fu-len, fu-rename, fu-sort, fu-uniq, n50, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/naf |
shpc-registry automated BioContainers addition for naf |
ennaf, unnaf |
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GITHUB
|
quay.io/biocontainers/naibr-plus |
singularity registry hpc automated addition for naibr-plus |
naibr, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/naltorfs |
singularity registry hpc automated addition for naltorfs |
bicodon_counts_from_fasta.py, codon_freq_from_bicodons.py, find_nested_alt_orfs.py, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/namfinder |
singularity registry hpc automated addition for namfinder |
namfinder |
|
GITHUB
|
quay.io/biocontainers/nanoblaster |
shpc-registry automated BioContainers addition for nanoblaster |
nanoblaster |
|
GITHUB
|
quay.io/biocontainers/nanocall |
shpc-registry automated BioContainers addition for nanocall |
nanocall, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff |
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GITHUB
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quay.io/biocontainers/nanocaller |
singularity registry hpc automated addition for nanocaller |
NanoCaller, import_pb_to_tensorboard, vcfnormalizesvs, vcfnull2ref, vcfunphase, whatshap, plotBfst.R, plotHapLrt.R, plotHaplotypes.R, plotPfst.R, plotSmoothed.R, plotWCfst.R, plotXPEHH.R, plot_roc.r, abba-baba, bFst, bed2region, bgziptabix, dumpContigsFromHeader, genotypeSummary, hapLrt, iHS, meltEHH, normalize-iHS, pFst, pVst, permuteGPAT++, permuteSmooth, plotHaps, popStats, segmentFst |
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GITHUB
|
quay.io/biocontainers/nanocomp |
shpc-registry automated BioContainers addition for nanocomp |
NanoComp, NanoPlot, orca-server, pauvre, flask, compile-et.pl, prerr.properties, pt2to3, ptdump, ptrepack, pttree, qdistancefieldgenerator, qmlpreview, qvkgen |
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GITHUB
|
quay.io/biocontainers/nanocompore |
shpc-registry automated BioContainers addition for nanocompore |
bedparse, nanocompore, faidx, tqdm, f2py3.7, opj_compress, opj_decompress, opj_dump, 2to3-3.7, idle3.7, pydoc3.7, python3.7 |
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GITHUB
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quay.io/biocontainers/nanocount |
singularity registry hpc automated addition for nanocount |
NanoCount, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tqdm |
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GITHUB
|
quay.io/biocontainers/nanofilt |
shpc-registry automated BioContainers addition for nanofilt |
NanoFilt, f2py3.6, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, 2to3-3.6, idle3.6 |
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GITHUB
|
quay.io/biocontainers/nanoget |
shpc-registry automated BioContainers addition for nanoget |
f2py3.6, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, 2to3-3.6, idle3.6 |
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GITHUB
|
quay.io/biocontainers/nanoinsight |
singularity registry hpc automated addition for nanoinsight |
bigRmskAlignBed.as, bigRmskBed.as, combineRMFiles.pl, gawk-5.3.0, gawkbug, genl-ctrl-list, h5tools_test_utils, idiag-socket-details, makeclusterdb, maskFile.pl, nanoinsight, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave, nl-link-ifindex2name, nl-link-list, nl-link-name2ifindex, nl-link-release, nl-link-set, nl-link-stats, nl-list-caches, nl-list-sockets, nl-monitor, nl-neigh-add, nl-neigh-delete, nl-neigh-list, nl-neightbl-list, nl-nh-list, nl-pktloc-lookup, nl-qdisc-add, nl-qdisc-delete, nl-qdisc-list, nl-route-add, nl-route-delete, nl-route-get, nl-route-list, nl-rule-list, nl-tctree-list, nl-util-addr, protoc-25.1.0, renumberRMFiles.pl, rmToTrackHub.pl, torch_shm_manager, RM2Bed.py, buildRMLibFromEMBL.pl, buildSummary.pl, wublastToCrossmatch.pl, DupMasker, ProcessRepeats, RepeatMasker, RepeatProteinMask, calcDivergenceFromAlign.pl, cmtime, createRepeatLandscape.pl, dupliconToSVG.pl, getRepeatMaskerBatch.pl, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, mckey, rcopy, rdma_client |
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GITHUB
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quay.io/biocontainers/nanolyse |
shpc-registry automated BioContainers addition for nanolyse |
NanoLyse, minimap2.py, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/nanomath |
shpc-registry automated BioContainers addition for nanomath |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/nanometa-live |
singularity registry hpc automated addition for nanometa-live |
ansi2html, dash-update-components, jsondiff, jsonpatch, jsonpointer, nanometa, nanometa-blastdb, nanometa-new, nanometa-pipe, nanometa-sim, protoc-23.3.0, renderer, dash-generate-components, mamba-package, markdown-it, conda2solv, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, bsdcat, bsdcpio, bsdtar, conda-env, cph, stone, yte, plac_runner.py, test_pcre, flask, docutils, pulptest, cbc, clp |
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GITHUB
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quay.io/biocontainers/nanomod |
shpc-registry automated BioContainers addition for nanomod |
NanoMod.py, unit2, paftools.js, minimap2, k8, qualfa2fq.pl, xa2multi.pl, bwa, f2py2, f2py2.7, python2-config |
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GITHUB
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quay.io/biocontainers/nanomonsv |
shpc-registry automated BioContainers addition for nanomonsv |
DateRepeats, DupMasker, ProcessRepeats, RM2Bed.py, RepeatMasker, RepeatProteinMask, buildRMLibFromEMBL.pl, buildSummary.pl, calcDivergenceFromAlign.pl, createRepeatLandscape.pl, dupliconToSVG.pl, getRepeatMaskerBatch.pl, maskFile.pl, nanomonsv, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, trfMask, wublastToCrossmatch.pl, rmblastn, trf4.10.0-rc.2.linux64.exe, trf, blast_report, blastdb_convert, blastdb_path, racon, rampler, racon_wrapper, certtool |
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GITHUB
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quay.io/biocontainers/nanomotif |
singularity registry hpc automated addition for nanomotif |
nanomotif, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/nanonet |
shpc-registry automated BioContainers addition for nanonet |
myriad, nanonet2d, nanonetcall, nanonettrain, watchmedo, easy_install-2.7, cygdb, cython, cythonize, python2-config, python2.7-config, python2, python2.7, idle, python-config |
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GITHUB
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quay.io/biocontainers/nanoplexer |
shpc-registry automated BioContainers addition for nanoplexer |
nanoplexer |
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GITHUB
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quay.io/biocontainers/nanoplot |
shpc-registry automated BioContainers addition for nanoplot |
NanoPlot, pauvre, createfontdatachunk.py, enhancer.py, explode.py, gifmaker.py, painter.py, player.py, thresholder.py, viewer.py, pilconvert.py, pildriver.py |
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GITHUB
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quay.io/biocontainers/nanoplotter |
shpc-registry automated BioContainers addition for nanoplotter |
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GITHUB
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quay.io/biocontainers/nanopolish |
shpc-registry automated BioContainers addition for nanopolish |
ccmake, cmake, cpack, ctest, ed2k-link, gost-hash, has160-hash, magnet-link, nanopolish, nanopolish_makerange.py, nanopolish_merge.py, rhash, sfv-hash, tiger-hash, tth-hash, whirlpool-hash, enhancer.py, explode.py, gifmaker.py, painter.py, player.py, thresholder.py, viewer.py, pilconvert.py, pildriver.py, pilfile.py |
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GITHUB
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quay.io/biocontainers/nanopolishcomp |
shpc-registry automated BioContainers addition for nanopolishcomp |
NanopolishComp, tqdm, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/nanopore_simulation |
shpc-registry automated BioContainers addition for nanopore_simulation |
simulatION, compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, qwebengine_convert_dict |
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GITHUB
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quay.io/biocontainers/nanoq |
shpc-registry automated BioContainers addition for nanoq |
nanoq |
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GITHUB
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quay.io/biocontainers/nanoqc |
shpc-registry automated BioContainers addition for nanoqc |
nanoQC, bokeh, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/nanoraw |
shpc-registry automated BioContainers addition for nanoraw |
graphmap, nanoraw, unit2, qualfa2fq.pl, xa2multi.pl, bwa, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7 |
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GITHUB
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quay.io/biocontainers/nanosim-h |
shpc-registry automated BioContainers addition for nanosim-h |
fastq-interleave, last-dotplot, last-map-probs, last-merge-batches, last-pair-probs, last-postmask, last-split, last-split8, last-train, lastal, lastal8, lastdb, lastdb8, maf-convert, maf-cut, maf-join, maf-sort, maf-swap, nanosim-h, nanosim-h-train, parallel-fasta, parallel-fastq, parsort, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh, env_parallel.pdksh |
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GITHUB
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quay.io/biocontainers/nanosim |
shpc-registry automated BioContainers addition for nanosim |
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GITHUB
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quay.io/biocontainers/nanosimh |
shpc-registry automated BioContainers addition for nanosimh |
fastq-interleave, last-dotplot, last-map-probs, last-merge-batches, last-pair-probs, last-postmask, last-split, last-train, lastal, lastdb, maf-convert, maf-join, maf-sort, maf-swap, nanosimh_simulate, nanosimh_train, parallel-fasta, parallel-fastq, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, uconv |
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GITHUB
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quay.io/biocontainers/nanosplit |
shpc-registry automated BioContainers addition for nanosplit |
NanoSplit, createfontdatachunk.py, enhancer.py, explode.py, gifmaker.py, painter.py, player.py, thresholder.py, viewer.py, pilconvert.py, pildriver.py |
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GITHUB
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quay.io/biocontainers/nanospring |
shpc-registry automated BioContainers addition for nanospring |
NanoSpring |
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GITHUB
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quay.io/biocontainers/nanostat |
shpc-registry automated BioContainers addition for nanostat |
NanoStat, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/nanosv |
shpc-registry automated BioContainers addition for nanosv |
NanoSV, vcf_sample_filter.py, vcf_filter.py, vcf_melt, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl |
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GITHUB
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quay.io/biocontainers/nanovar |
shpc-registry automated BioContainers addition for nanovar |
cytocad, hs-blastn, import_pb_to_tensorboard, nanovar, rfmix2tagore.py, tagore, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2 |
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GITHUB
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quay.io/biocontainers/narfmap |
singularity registry hpc automated addition for narfmap |
dragen-os, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/nasm |
shpc-registry automated BioContainers addition for nasm |
nasm, ndisasm |
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GITHUB
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quay.io/biocontainers/nasp |
shpc-registry automated BioContainers addition for nasp |
convert_external_genome, filter_matrix_by_coord.py, filter_matrix_by_distance.py, filter_matrix_by_genome.py, find_duplicates, format_fasta, matrix_to_fasta.py, merge_matrices.py, nasp, report_single_snps_single_isolate.py, varfilter.py, vcf_to_matrix, trimmomatic, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer |
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GITHUB
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quay.io/biocontainers/ncbi-acc-download |
shpc-registry automated BioContainers addition for ncbi-acc-download |
nad, ncbi-acc-download, chardetect, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/ncbi-amr |
shpc-registry automated BioContainers addition for ncbi-amr |
amr_report, amrfinder.pl, fasta_check, gff_check, blast_report, blastdb_convert, blastdb_path, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2 |
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GITHUB
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quay.io/biocontainers/ncbi-amrfinderplus |
shpc-registry automated BioContainers addition for ncbi-amrfinderplus |
amr_report, amrfinder, amrfinder_update, dna_mutation, fasta2parts, fasta_check, fasta_extract, gff_check, CA.pm, cacert.pem, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras, pm-collect, readme.pdf |
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GITHUB
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quay.io/biocontainers/ncbi-datasets-cli |
shpc-registry automated BioContainers addition for ncbi-datasets-cli |
dataformat, datasets |
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GITHUB
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quay.io/biocontainers/ncbi-datasets-pylib |
singularity registry hpc automated addition for ncbi-datasets-pylib |
gffutils-cli, f2py3.11, vcf_sample_filter.py, vcf_filter.py, vcf_melt, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, faidx, protoc, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
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GITHUB
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quay.io/biocontainers/ncbi-fcs-gx |
singularity registry hpc automated addition for ncbi-fcs-gx |
action_report.py, blast_names_mapping.tsv, classify_taxonomy.py, db_exclude.locs.tsv, gx, run_gx.py, sync_files.py, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
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quay.io/biocontainers/ncbi-genome-download |
shpc-registry automated BioContainers addition for ncbi-genome-download |
gimme_taxa.py, ncbi-genome-download, ngd, normalizer, tqdm, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/ncbi-ngs-sdk |
shpc-registry automated BioContainers addition for ncbi-ngs-sdk |
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GITHUB
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quay.io/biocontainers/ncbi-stxtyper |
singularity registry hpc automated addition for ncbi-stxtyper |
fasta_extract, stx.prot, stxtyper, bsmp2info, fasta_check, fsa2xml, gbf2info, just-top-hits, systematic-mutations, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record |
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GITHUB
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quay.io/biocontainers/ncbi-util-legacy |
shpc-registry automated BioContainers addition for ncbi-util-legacy |
Nentrez, Psequin, asn2ff, asn2gb, asn2idx, asndhuff, asntool, blastcl3, cdscan, checksub, ddv, debruijn, demo_regexp, demo_regexp_grep, dosimple, entrcmd, entrez2, errhdr, fa2htgs, findspl, gene2xml, getmesh, getpub, gil2bin, idfetch, indexpub, makeset, mwm, ncbisort, sbtedit, seqtest, tcsh, test_regexp, testcore, testobj, testval, udv, uil, vecscreen, xmbind, tbl2asn, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv |
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GITHUB
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quay.io/biocontainers/ncbi-vdb-py |
shpc-registry automated BioContainers addition for ncbi-vdb-py |
2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/ncbi-vdb |
shpc-registry automated BioContainers addition for ncbi-vdb |
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GITHUB
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quay.io/biocontainers/ncbimeta |
shpc-registry automated BioContainers addition for ncbimeta |
NCBImeta, NCBImetaAnnotate, NCBImetaExport, NCBImetaJoin, xslt-config, xsltproc, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/ncbitax2lin |
singularity registry hpc automated addition for ncbitax2lin |
ncbitax2lin, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/ncbitk |
shpc-registry automated BioContainers addition for ncbitk |
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GITHUB
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quay.io/biocontainers/ncfp |
shpc-registry automated BioContainers addition for ncfp |
ncfp, easydev_buildPackage, ibrowse, multigit, browse, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, rst2html4.py |
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GITHUB
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quay.io/biocontainers/ncls |
shpc-registry automated BioContainers addition for ncls |
f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/ncrf |
shpc-registry automated BioContainers addition for ncrf |
NCRF, ncrf_cat, ncrf_cat.py, ncrf_consensus_filter, ncrf_consensus_filter.py, ncrf_parse.py, ncrf_resolve_overlaps, ncrf_resolve_overlaps.py, ncrf_sort, ncrf_sort.py, ncrf_summary, ncrf_summary.py, ncrf_to_bed, ncrf_to_bed.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/nda-tools |
singularity registry hpc automated addition for nda-tools |
downloadcmd, integration_tests, keyring, unit_tests, vtcmd, jp.py, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, dbus-cleanup-sockets, dbus-daemon, dbus-launch, dbus-monitor, dbus-run-session, dbus-send, dbus-test-tool, dbus-update-activation-environment, dbus-uuidgen, tqdm, normalizer, python3.1 |
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GITHUB
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quay.io/biocontainers/ndex-python |
shpc-registry automated BioContainers addition for ndex-python |
chardetect, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/ndex2 |
singularity registry hpc automated addition for ndex2 |
f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, normalizer, python3.1 |
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GITHUB
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quay.io/biocontainers/ndg-httpsclient |
shpc-registry automated BioContainers addition for ndg-httpsclient |
ndg_httpclient, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/neatms |
shpc-registry automated BioContainers addition for neatms |
theano-cache, theano-nose, freeze_graph, mako-render, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard |
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GITHUB
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quay.io/biocontainers/nebulizer |
shpc-registry automated BioContainers addition for nebulizer |
bioblend-galaxy-tests, nebulizer, mako-render, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file |
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GITHUB
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quay.io/biocontainers/necat |
shpc-registry automated BioContainers addition for necat |
necat, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/nedbit-features-calculator |
singularity registry hpc automated addition for nedbit-features-calculator |
nedbit-features-calculator |
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GITHUB
|
quay.io/biocontainers/nedrex |
singularity registry hpc automated addition for nedrex |
normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/needle |
shpc-registry automated BioContainers addition for needle |
needle |
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GITHUB
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quay.io/biocontainers/negative_training_sampler |
shpc-registry automated BioContainers addition for negative_training_sampler |
negative_training_sampler, dask-scheduler, dask-ssh, dask-worker, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py |
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GITHUB
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quay.io/biocontainers/nemo-age |
shpc-registry automated BioContainers addition for nemo-age |
nemoage |
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GITHUB
|
quay.io/biocontainers/nemo |
shpc-registry automated BioContainers addition for nemo |
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GITHUB
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quay.io/biocontainers/neodisambiguate |
singularity registry hpc automated addition for neodisambiguate |
neodisambiguate, jwebserver, jpackage, cups-config, ippeveprinter, ipptool, hb-info, jfr, tjbench, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb |
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GITHUB
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quay.io/biocontainers/neofox |
singularity registry hpc automated addition for neofox |
dotenv, faker, neofox, neofox-configure, neofox-epitope, protoc-gen-grpclib_python, protoc-gen-python_betterproto, protoc-gen-python_grpc, dask-scheduler, dask-ssh, dask-worker, bokeh, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl, sort-table, spdi2tbl |
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GITHUB
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quay.io/biocontainers/neoloop |
singularity registry hpc automated addition for neoloop |
add_prefix_to_cool.py, assemble-complexSVs, calculate-cnv, calfea, cmtime, correct-cnv, domaincaller, get_gprof, h5fuse.sh, hitad, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, isort, isort-identify-imports, mckey, neoloop-caller, neotad-caller, output-DI, plot-cnv, prepare-SV-breakpoints.py, protoc-24.3.0, pyensembl, pylint, pylint-config, pyreverse, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, searchSVbyGene, segment-cnv, simulate-cnv, symilar, tad-plot, ucmatose, udaddy, udpong, io_demo, ucx_info, ucx_perftest, ucx_read_profile, dask, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, cooler, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix, pairs_merger, process_merged_nodup.sh, process_old_merged_nodup.sh, streamer_1d |
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GITHUB
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quay.io/biocontainers/neptune-signature |
singularity registry hpc automated addition for neptune-signature |
neptune, neptune-conda, bsmp2info, fsa2xml, gbf2info, just-top-hits, systematic-mutations, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gbf2fsa |
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GITHUB
|
quay.io/biocontainers/neptune |
shpc-registry automated BioContainers addition for neptune |
neptune, neptune-conda, build.sh, common.go, rchive.go, setup-deps.log, setup.sh, xtract.go, metadata_conda_debug.yaml, bt-context.txt, bt-link, bt-load |
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GITHUB
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quay.io/biocontainers/nerpa |
shpc-registry automated BioContainers addition for nerpa |
NRPsMatcher, nerpa.py, nerpa_init.py, jpackage, cups-config, ippeveprinter, ipptool, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.7 |
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GITHUB
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quay.io/biocontainers/nest |
shpc-registry automated BioContainers addition for nest |
|
|
GITHUB
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quay.io/biocontainers/netcdf-metadata-info |
shpc-registry automated BioContainers addition for netcdf-metadata-info |
netcdf-metadata-info, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
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GITHUB
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quay.io/biocontainers/netifaces |
shpc-registry automated BioContainers addition for netifaces |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/netreg |
shpc-registry automated BioContainers addition for netreg |
netReg, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff |
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GITHUB
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quay.io/biocontainers/netsyn |
singularity registry hpc automated addition for netsyn |
aria2c, f2py3.11, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, netsyn, netsyn_clusteringIntoFamilies, netsyn_dataExport, netsyn_getINSDCFiles, netsyn_parseINSDCFiles_GetTaxonomy, netsyn_syntenyFinder, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, mmseqs, igraph, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis, ndmetis, gawk-5.1.0, awk, gawk, jsonschema, idn2, glpsol, normalizer, wget, python3.1, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/networkxgmml |
shpc-registry automated BioContainers addition for networkxgmml |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/neurodocker |
shpc-registry automated BioContainers addition for neurodocker |
neurodocker, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/newick_utils |
shpc-registry automated BioContainers addition for newick_utils |
nw_clade, nw_condense, nw_display, nw_distance, nw_duration, nw_ed, nw_gen, nw_indent, nw_labels, nw_match, nw_order, nw_prune, nw_rename, nw_reroot, nw_stats, nw_support, nw_topology, nw_trim |
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GITHUB
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quay.io/biocontainers/newt |
shpc-registry automated BioContainers addition for newt |
slsh, whiptail, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/nextalign |
shpc-registry automated BioContainers addition for nextalign |
nextalign |
|
GITHUB
|
quay.io/biocontainers/nextclade |
shpc-registry automated BioContainers addition for nextclade |
nextclade |
|
GITHUB
|
quay.io/biocontainers/nextclade2 |
singularity registry hpc automated addition for nextclade2 |
nextclade2 |
|
GITHUB
|
quay.io/biocontainers/nextclade_js |
shpc-registry automated BioContainers addition for nextclade_js |
nextclade, nextclade.js, node, npm, npx |
|
GITHUB
|
quay.io/biocontainers/nextdenovo |
singularity registry hpc automated addition for nextdenovo |
nextDenovo, paralleltask, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/nextflow |
shpc-registry automated BioContainers addition for nextflow |
nextflow, nextflow.bak, jpackage, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod |
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GITHUB
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quay.io/biocontainers/nextgenmap |
shpc-registry automated BioContainers addition for nextgenmap |
addr2line, ar, as, c++filt, dwp, elfedit, gold, gprof, ld, ld.bfd, ld.gold, ngm, ngm-core, ngm-core-debug, ngm-debug, ngm-log, ngm-utils, ngm-utils-debug, nm, objcopy, objdump, oclTool, ranlib, readelf, size, strings, strip |
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GITHUB
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quay.io/biocontainers/nextpolish |
singularity registry hpc automated addition for nextpolish |
nextPolish, paralleltask, seq_count, seq_split, sdust, paftools.js, minimap2, k8, qualfa2fq.pl, xa2multi.pl, bwa, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl |
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GITHUB
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quay.io/biocontainers/nextpolish2 |
singularity registry hpc automated addition for nextpolish2 |
nextPolish2, yak |
|
GITHUB
|
quay.io/biocontainers/nextstrain-cli |
shpc-registry automated BioContainers addition for nextstrain-cli |
nextstrain, docutils, jp.py, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py |
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GITHUB
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quay.io/biocontainers/nf-core |
shpc-registry automated BioContainers addition for nf-core |
cheetah, cheetah-analyze, cheetah-compile, galaxy-tool-test, import_igenome, mulled-build, mulled-build-channel, mulled-build-files, mulled-build-tool, mulled-hash, mulled-list, mulled-search, mulled-update-singularity-containers, nf-core, refgenie, rich-click, scalar, conda-env, cph, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, docutils |
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GITHUB
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quay.io/biocontainers/nf-test |
singularity registry hpc automated addition for nf-test |
nf-test, jpackage, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd, df, dir, dircolors, dirname, du, echo |
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GITHUB
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quay.io/biocontainers/ngless |
shpc-registry automated BioContainers addition for ngless |
ngless, ngless-wrapped, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, megahit, megahit_toolkit, prodigal, sdust, paftools.js, minimap2, k8 |
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GITHUB
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quay.io/biocontainers/nglview |
shpc-registry automated BioContainers addition for nglview |
nglview, conv-template, from-template, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run |
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GITHUB
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quay.io/biocontainers/ngmaster |
shpc-registry automated BioContainers addition for ngmaster |
gfPcr, gfServer, isPcr, ngmaster, chardetect, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/ngmerge |
shpc-registry automated BioContainers addition for ngmerge |
NGmerge |
|
GITHUB
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quay.io/biocontainers/ngmlr |
shpc-registry automated BioContainers addition for ngmlr |
ngmlr |
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GITHUB
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quay.io/biocontainers/ngs-bits |
shpc-registry automated BioContainers addition for ngs-bits |
BamCleanHaloplex, BamClipOverlap, BamDownsample, BamFilter, BamToFastq, BedAdd, BedAnnotateFreq, BedAnnotateFromBed, BedAnnotateGC, BedAnnotateGenes, BedChunk, BedCoverage, BedExtend, BedGeneOverlap, BedHighCoverage, BedInfo, BedIntersect, BedLiftOver, BedLowCoverage, BedMerge, BedReadCount, BedShrink, BedSort, BedSubtract, BedToFasta, BedpeAnnotateBreakpointDensity, BedpeAnnotateCnvOverlap, BedpeAnnotateCounts, BedpeAnnotateFromBed, BedpeFilter, BedpeGeneAnnotation, BedpeSort, BedpeToBed, CfDnaQC, CnvFilterAnnotations, CnvGeneAnnotation, CnvHunter, FastaInfo, FastqAddBarcode, FastqConcat, FastqConvert, FastqDownsample, FastqExtract, FastqExtractBarcode, FastqExtractUMI, FastqFormat, FastqList, FastqMidParser, FastqToFasta, FastqTrim, GSvar.ini.example, GSvarServer.ini.example, GSvar_filters.ini, GSvar_filters_cnv.ini, GSvar_filters_sv.ini, GSvar_special_regions.tsv, GenePrioritization, GenesToApproved, GenesToBed, GraphStringDb, HgvsToVcf, MappingQC, NGSDAddVariantsGermline, NGSDAddVariantsSomatic, NGSDAnnotateCNV, NGSDAnnotateGeneExpression, NGSDAnnotateRNA, NGSDAnnotateSV, NGSDExportAnnotationData, NGSDExportCnvTrack, NGSDExportGenes, NGSDExportSV, NGSDExportSamples, NGSDExtractRNACohort, NGSDImportEnsembl, NGSDImportExpressionData, NGSDImportGeneInfo, NGSDImportHGNC, NGSDImportHPO, NGSDImportOMIM, NGSDImportORPHA, NGSDImportQC, NGSDInit, NGSDMaintain, NGSDUpdateSvGenotype, PERsim, PhenotypeSubtree, PhenotypesToGenes, ReadQC, RnaQC, RohHunter, SampleAncestry, SampleDiff, SampleGender, SampleOverview, SampleSimilarity, SeqPurge, SomaticCnvMetrics, SomaticQC, SplicingToBed, SvFilterAnnotations, TrioMaternalContamination, TsvFilter, TsvInfo, TsvMerge, TsvSlice, TsvToQC, UpdHunter, VariantAnnotateASE, VariantAnnotateFrequency, VariantFilterAnnotations, VariantFilterRegions, VariantQC, VariantRanking, VcfAnnotateConsequence, VcfAnnotateFromBed, VcfAnnotateFromBigWig, VcfAnnotateFromVcf, VcfAnnotateHexplorer, VcfBreakMulti, VcfCalculatePRS, VcfCheck, VcfExtractSamples, VcfFilter, VcfLeftNormalize, VcfSort, VcfStreamSort, VcfToBed, VcfToBedpe, VcfToTsv, settings.ini.example, settings_nightly.ini, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, qwebengine_convert_dict |
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GITHUB
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quay.io/biocontainers/ngs-chew |
singularity registry hpc automated addition for ngs-chew |
ngs-chew, gff2gff.py, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, normalizer, tqdm, fasta-sanitize.pl, plot-ampliconstats, f2py3.10, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl |
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GITHUB
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quay.io/biocontainers/ngs-disambiguate |
shpc-registry automated BioContainers addition for ngs-disambiguate |
ngs_disambiguate, bamtools |
|
GITHUB
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quay.io/biocontainers/ngs-smap |
singularity registry hpc automated addition for ngs-smap |
smap, fonttools, pyftmerge, pyftsubset, ttx, brotli, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap, groupBy, intersectBed |
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GITHUB
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quay.io/biocontainers/ngs-tools |
shpc-registry automated BioContainers addition for ngs-tools |
shortuuid, x86_64-conda_cos7-linux-gnu-ld, numba, pycc, tqdm, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10 |
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GITHUB
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quay.io/biocontainers/ngs_te_mapper2 |
shpc-registry automated BioContainers addition for ngs_te_mapper2 |
DateRepeats, DupMasker, ProcessRepeats, RepeatMasker, RepeatProteinMask, calcDivergenceFromAlign.pl, createRepeatLandscape.pl, dupliconToSVG.pl, getRepeatMaskerBatch.pl, ngs_te_mapper2, queryRepeatDatabase.pl, queryTaxonomyDatabase.pl, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, trfMask, rmblastn, trf4.10.0-rc.2.linux64.exe, trf, blast_report, blastdb_convert, blastdb_path, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv |
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GITHUB
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quay.io/biocontainers/ngscheckmate |
shpc-registry automated BioContainers addition for ngscheckmate |
ncm.py, ncm_fastq.py, gff2gff.py, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, fasta-sanitize.pl, plot-ampliconstats |
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GITHUB
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quay.io/biocontainers/ngsderive |
shpc-registry automated BioContainers addition for ngsderive |
ngsderive, pkginfo, poetry, doesitcache, jsonschema, f2py3.7, chardetect, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
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GITHUB
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quay.io/biocontainers/ngsep |
shpc-registry automated BioContainers addition for ngsep |
ngsep, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs, pack200 |
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GITHUB
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quay.io/biocontainers/ngseqbasic |
shpc-registry automated BioContainers addition for ngseqbasic |
NGseqBasic, bedClip, bedGraphPack, innochecksum, msql2mysql, myisam_ftdump, myisamchk, myisamlog, myisampack, mysql, mysql_client_test, mysql_convert_table_format, mysql_find_rows, mysql_fix_extensions, mysql_plugin, mysql_secure_installation, mysql_setpermission, mysql_tzinfo_to_sql, mysql_upgrade, mysql_waitpid, mysql_zap, mysqlaccess, mysqlaccess.conf, mysqladmin, mysqlbinlog, mysqlbug, mysqlcheck, mysqld, mysqld_multi, mysqld_safe, mysqldump, mysqldumpslow, mysqlhotcopy, mysqlimport, mysqlshow, mysqlslap, mysqltest, replace, resolve_stack_dump, resolveip, testEnvironment, trim_galore, flash, bedGraphToBigWig, bedToBigBed, cutadapt, fastqc, bowtie, bowtie-build, bowtie-inspect, perl5.22.0, c2ph |
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GITHUB
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quay.io/biocontainers/ngshmmalign |
shpc-registry automated BioContainers addition for ngshmmalign |
ngshmmalign, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/ngsindex |
singularity registry hpc automated addition for ngsindex |
summarize-index, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
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quay.io/biocontainers/ngslca |
singularity registry hpc automated addition for ngslca |
ngsLCA, htsfile, bgzip, tabix |
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GITHUB
|
quay.io/biocontainers/ngsngs |
singularity registry hpc automated addition for ngsngs |
ngsngs, htsfile, bgzip, tabix |
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GITHUB
|
quay.io/biocontainers/ngsplotdb-ngsplotdb-hg19 |
shpc-registry automated BioContainers addition for ngsplotdb-ngsplotdb-hg19 |
ExtractGName.R, alt_reg_cufflinks, alter2bed.pl, combine_diff.pl, coordinat.pl, difflist2bed.pl, get_difflist.pl, gtf2txt_plot.pl, install.db.tables.r, make_cgi_list.R, make_gene_model.R, ngs.plot.r, ngsplotdb.py, parse_diff.pl, plotCorrGram.r, remove.db.tables.r, replot.r, setTableDefaults.py, time.bigWig.extractOnly.r, time.bigWig.r, time.libload.r, time.ngs.plot.extractOnly.r, time.ngs.plot.r, time.tabix.2.r, time.tabix.extractOnly.r, time.tabix.r, wget, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/ngsutils |
shpc-registry automated BioContainers addition for ngsutils |
bamutils, bedutils, fastqutils, gtfutils, ngsutils, swalign, coverage, fasta-sanitize.pl, plot-ampliconstats, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
|
quay.io/biocontainers/niemads |
shpc-registry automated BioContainers addition for niemads |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/niemagraphgen |
singularity registry hpc automated addition for niemagraphgen |
ngg_barabasi_albert, ngg_barbell, ngg_complete, ngg_cycle, ngg_empty, ngg_erdos_renyi, ngg_newman_watts_strogatz, ngg_path, ngg_ring_lattice |
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GITHUB
|
quay.io/biocontainers/nii2dcm |
singularity registry hpc automated addition for nii2dcm |
keyring, nib-conform, nib-convert, nib-dicomfs, nib-diff, nib-ls, nib-nifti-dx, nib-roi, nib-stats, nib-tck2trk, nib-trk2tck, nii2dcm, parrec2nii, pkginfo, pydicom, twine, dunamai, markdown-it, docutils, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py, rst2xetex.py, rst2xml.py, rstpep2html.py, tjbench, pygmentize, dbus-cleanup-sockets, dbus-daemon, dbus-launch, dbus-monitor, dbus-run-session, dbus-send, dbus-test-tool, dbus-update-activation-environment |
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GITHUB
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quay.io/biocontainers/nim-falcon |
shpc-registry automated BioContainers addition for nim-falcon |
falconc, fc_consensus.exe, fc_rr_hctg_track.exe, fc_rr_hctg_track2.exe, htsfile, bgzip, tabix |
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GITHUB
|
quay.io/biocontainers/nimnexus |
shpc-registry automated BioContainers addition for nimnexus |
nimnexus, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/ninja-nj |
singularity registry hpc automated addition for ninja-nj |
Ninja |
|
GITHUB
|
quay.io/biocontainers/nlstradamus |
shpc-registry automated BioContainers addition for nlstradamus |
NLStradamus |
|
GITHUB
|
quay.io/biocontainers/nmrglue |
shpc-registry automated BioContainers addition for nmrglue |
f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
|
quay.io/biocontainers/nmrml2isa |
shpc-registry automated BioContainers addition for nmrml2isa |
nmrml2isa, pronto, xslt-config, xsltproc, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7 |
|
GITHUB
|
quay.io/biocontainers/noah-cli |
singularity registry hpc automated addition for noah-cli |
fab, inv, invoke, noah, pysradb, markdown-it, f2py3.11, pygmentize, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, xslt-config, xsltproc, tqdm, normalizer, python3.1 |
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GITHUB
|
quay.io/biocontainers/nohuman |
singularity registry hpc automated addition for nohuman |
nohuman, kraken2, kraken2-build, kraken2-inspect, blastn_vdb, tblastn_vdb, uuid, uuid-config, test_pcre, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns |
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GITHUB
|
quay.io/biocontainers/noise2read |
singularity registry hpc automated addition for noise2read |
alembic, bcalm, bcool, bgreat, btrim, mpire-dashboard, noise2read, ntcard, nthll, optuna, xgboost, mako-render, vba_extract.py, seqtk, tjbench, pygmentize, tqdm, fonttools, pyftmerge, pyftsubset, ttx, brotli, h5cc, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, jpgicc, linkicc, psicc, tificc |
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GITHUB
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quay.io/biocontainers/nolb |
singularity registry hpc automated addition for nolb |
NOLB |
|
GITHUB
|
quay.io/biocontainers/nonpareil |
shpc-registry automated BioContainers addition for nonpareil |
nonpareil |
|
GITHUB
|
quay.io/biocontainers/nopilesum |
shpc-registry automated BioContainers addition for nopilesum |
ldc-build-runtime, ldc-profdata, ldc-prune-cache, ldc2, ldmd2, nopilesum, htsfile, bgzip, tabix |
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GITHUB
|
quay.io/biocontainers/nordic |
singularity registry hpc automated addition for nordic |
bonesis-attractors, bonesis-reprogramming, bonesis-utils, clasp, clingo, concat, gct2gctx, gctx2gct, gringo, lpconvert, mpbn, mpbn-sim, qnorm, reify, subset, h5fuse.sh, h5delete, cygdb, cython, cythonize, numba, hb-info, diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts, transform, rsvg-convert, gtk-builder-convert, gtk-demo, gtk-query-immodules-2.0, gtk-update-icon-cache, acyclic, bcomps |
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GITHUB
|
quay.io/biocontainers/noresm |
shpc-registry automated BioContainers addition for noresm |
addr2line, apr-1-config, apu-1-config, ar, as, c++filt, ccmake, cmake, cpack, create_clone, create_newcase, create_test, ctest, dirmngr, dirmngr-client, dumpsexp, dwp, ed2k-link, edonr256-hash, edonr512-hash, elfedit, gold, gost12-256-hash, gost12-512-hash, gpg, gpg-agent, gpg-card, gpg-connect-agent, gpg-error, gpg-error-config, gpg-wks-client, gpg-wks-server, gpgconf, gpgparsemail, gpgrt-config, gpgscm, gpgsm, gpgsplit, gpgtar, gpgv, gprof, h5pcc, h5perf, h5pfc, has160-hash, hmac256, kbxutil, ksba-config, ld, ld.bfd, ld.gold, libassuan-config, libgcrypt-config, magnet-link, mpicalc, nf-config, nm, npth-config, ntbtls-config, objcopy, objdump, ph5diff, query_config, query_testlists, ranlib, readelf, rhash, sfv-hash, size, strings, strip, svn, svnadmin, svnbench, svndumpfilter, svnfsfs, svnlook, svnmucc, svnrdump, svnserve, svnsync, svnversion, tcsh, tiger-hash, tth-hash, watchgnupg, whirlpool-hash, yat2m, mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, db_convert, mpifort, mpic++ |
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GITHUB
|
quay.io/biocontainers/norns |
shpc-registry automated BioContainers addition for norns |
nosetests-3.9, nosetests, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
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quay.io/biocontainers/nose-capturestderr |
shpc-registry automated BioContainers addition for nose-capturestderr |
nosetests-2.7, nosetests, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/notramp |
singularity registry hpc automated addition for notramp |
notramp, sdust, paftools.js, minimap2, k8, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/novasplice |
shpc-registry automated BioContainers addition for novasplice |
novasplice, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, cygdb, cython |
|
GITHUB
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quay.io/biocontainers/novoalign |
shpc-registry automated BioContainers addition for novoalign |
IONTorrent.R, installpackages.R, irqtop, isnovoindex, lsirq, novo2maq, novo2paf, novoalign, novoalign-license-register, novoalignMPI, novobarcode, novoindex, novolrcleaver, novolrcorrector, novolrpolish, novomethyl, novope2bed.pl, novorun.pl, novosort, novoutil, nsenter, prlimit, qcalplot.R, rrbsreference, scriptlive, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject |
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GITHUB
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quay.io/biocontainers/novobreak |
shpc-registry automated BioContainers addition for novobreak |
SSAKE, TQS.py, TQSexport.py, TQSfastq.pl, TQSfastq.py, analyzePositionSSAKE.pl, fetch_discordant.pl, filter_sv.bak.pl, filter_sv.pl, filter_sv2.pl, filter_sv_icgc.pl, getStats.pl, group_bp_reads.pl, infer_bp.pl, infer_bp_v4.pl, infer_sv.pl, makeFastaFileFromScaffolds.pl, makePairedOutput.pl, makePairedOutput2EQUALfiles.pl, makePairedOutput2UNEQUALfiles.pl, nLength.pl, novoBreak, qseq2fasta.pl, qseq2fastq.pl, run_novoBreak.sh, run_novobreak, run_ssake.pl, splitInput.pl, qualfa2fq.pl, xa2multi.pl, bwa, fasta-sanitize.pl, plot-ampliconstats, python2-config, python2.7-config, python2, python2.7, idle |
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GITHUB
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quay.io/biocontainers/novoplasty |
shpc-registry automated BioContainers addition for novoplasty |
Circos.pl, NOVOPlasty.pl, NOVOPlasty4.3.1.pl, filter_reads.pl, perl5.32.1, streamzip |
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GITHUB
|
quay.io/biocontainers/np-likeness-scorer |
shpc-registry automated BioContainers addition for np-likeness-scorer |
np-likeness, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, extcheck |
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GITHUB
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quay.io/biocontainers/npinv |
shpc-registry automated BioContainers addition for npinv |
npinv, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
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GITHUB
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quay.io/biocontainers/npstructures |
singularity registry hpc automated addition for npstructures |
f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
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quay.io/biocontainers/npyscreen |
shpc-registry automated BioContainers addition for npyscreen |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/nrpys |
singularity registry hpc automated addition for nrpys |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/nseg |
shpc-registry automated BioContainers addition for nseg |
nmerge, nseg |
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GITHUB
|
quay.io/biocontainers/nspdk |
shpc-registry automated BioContainers addition for nspdk |
NSPDK |
|
GITHUB
|
quay.io/biocontainers/ntcard |
shpc-registry automated BioContainers addition for ntcard |
ntcard, nthll, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/ntedit |
shpc-registry automated BioContainers addition for ntedit |
ntedit, nthits |
|
GITHUB
|
quay.io/biocontainers/nthits |
shpc-registry automated BioContainers addition for nthits |
nthits |
|
GITHUB
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quay.io/biocontainers/ntjoin |
shpc-registry automated BioContainers addition for ntjoin |
gunzip, gzexe, gzip, indexlr, lrunzip, lrzcat, lrzip, lrztar, lrzuntar, ntJoin, ntjoin_assemble.py, ntjoin_overlap.py, ntjoin_utils.py, read_fasta.py, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zmore, znew, zip, igraph, tar, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis, ndmetis, pigz |
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GITHUB
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quay.io/biocontainers/ntlink |
shpc-registry automated BioContainers addition for ntlink |
abyss-rresolver-short, abyss-stack-size, gunzip, gzexe, gzip, indexlr, irqtop, lrunzip, lrzcat, lrzip, lrztar, lrzuntar, lsirq, nsenter, ntLink, ntLink_rounds, prlimit, scriptlive, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zmore, znew, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject |
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GITHUB
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quay.io/biocontainers/ntm-profiler |
shpc-registry automated BioContainers addition for ntm-profiler |
add_dummy_AD.py, combine_vcf_variants.py, delly, lofreq, lofreq2_call_pparallel.py, lofreq2_indel_ovlp.py, lofreq2_somatic.py, lofreq2_vcfplot.py, ntm-profiler, rename_vcf_chrom.py, sam_add_rg.pl, update_version.sh, gatk, pilon, tabix++, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk |
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GITHUB
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quay.io/biocontainers/ntroot |
singularity registry hpc automated addition for ntroot |
eido, indexlr, lrunzip, lrzcat, lrzip, lrztar, lrzuntar, make_genome_bf, mi_bf_generate, ntRootAncestryPredictor.pl, ntcard, ntedit, ntedit_run_pipeline.smk, nthits, nthits-bfq, nthll, ntroot, ntroot_run_pipeline.smk, protoc-25.3.0, randseq, run-ntedit, zipcloak, zipnote, zipsplit, annot-tsv, zip, gunzip, gzexe, gzip, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zmore, znew, markdown-it, stone, tar, yte, plac_runner.py, docutils, pulptest, cbc, clp, humanfriendly |
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GITHUB
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quay.io/biocontainers/ntstat |
singularity registry hpc automated addition for ntstat |
indexlr, lrunzip, lrz, lrzcat, lrzip, lrztar, lrzuntar, mi_bf_generate, ntcard, nthll, ntstat, randseq, zipcloak, zipnote, zipsplit, zip, gunzip, gzexe, gzip, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zmore, znew, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, annot-tsv, tar, numpy-config, pigz, unpigz |
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GITHUB
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quay.io/biocontainers/ntsynt |
singularity registry hpc automated addition for ntsynt |
annot-tsv, assembly_block.py, eido, indexlr, lrunzip, lrzcat, lrzip, lrztar, lrzuntar, mi_bf_generate, ntSynt, ntjoin.py, ntjoin_utils.py, ntsynt_make_common_bf, ntsynt_make_repeat_bfs.py, ntsynt_run.py, ntsynt_run_pipeline.smk, ntsynt_synteny.py, protoc-25.1.0, randseq, synteny_block.py, zipcloak, zipnote, zipsplit, zip, gunzip, gzexe, gzip, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zmore, znew, igraph, markdown-it, stone, seqtk, tar, yte, plac_runner.py, docutils, pulptest, cbc, clp |
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GITHUB
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quay.io/biocontainers/nucamino |
shpc-registry automated BioContainers addition for nucamino |
nucamino |
|
GITHUB
|
quay.io/biocontainers/nucdiff |
shpc-registry automated BioContainers addition for nucdiff |
nucdiff, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot |
|
GITHUB
|
quay.io/biocontainers/nucleoatac |
shpc-registry automated BioContainers addition for nucleoatac |
nucleoatac, pyatac, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, htsfile |
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GITHUB
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quay.io/biocontainers/nucleosome_prediction |
shpc-registry automated BioContainers addition for nucleosome_prediction |
add_column.pl, add_column.pl.bak, bind.pl, bind.pl.bak, body.pl, body.pl.bak, cut.pl, cut.pl.bak, fasta2stab.pl, fasta2stab.pl.bak, filter.pl, filter.pl.bak, format_number.pl, format_number.pl.bak, format_xml.pl, format_xml.pl.bak, genie_helpers.pl, genie_helpers.pl.bak, gxw2consensus.pl, gxw2consensus.pl.bak, gxw2stats.pl, gxw2stats.pl.bak, join.pl, join.pl.bak, libattrib.pl, libattrib.pl.bak, libfile.pl, libfile.pl.bak, liblist.pl, liblist.pl.bak, libset.pl, libset.pl.bak, libstats.pl, libstats.pl.bak, libtable.pl, libtable.pl.bak, lin.pl, lin.pl.bak, load_args.pl, load_args.pl.bak, ltqnorm.pl, ltqnorm.pl.bak, make_gnuplot_graph.pl, make_gnuplot_graph.pl.bak, map_learn_static, modify_column.pl, modify_column.pl.bak, nucleosome_prediction.pl, nucleosome_prediction.pl.bak, sequence_helpers.pl, sequence_helpers.pl.bak, stab2fasta.pl, stab2fasta.pl.bak, tab2feature_gxt.pl, tab2feature_gxt.pl.bak, to_upper_case.pl, to_upper_case.pl.bak, transpose.pl, transpose.pl.bak, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/nudup |
shpc-registry automated BioContainers addition for nudup |
nudup.py, egrep, fgrep, grep, basenc, b2sum, base32, base64, basename, cat, chcon |
|
GITHUB
|
quay.io/biocontainers/nullarbor |
shpc-registry automated BioContainers addition for nullarbor |
abricate, abricate-get_db, centrifuge, centrifuge-BuildSharedSequence.pl, centrifuge-RemoveEmptySequence.pl, centrifuge-RemoveN.pl, centrifuge-build, centrifuge-build-bin, centrifuge-class, centrifuge-compress.pl, centrifuge-download, centrifuge-inspect, centrifuge-inspect-bin, centrifuge-kreport, centrifuge-sort-nt.pl, centrifuge_evaluate.py, centrifuge_simulate_reads.py, coronaspades.py, create_pan_genome, create_pan_genome_plots.R, extract_proteome_from_gff, fa, fq, iqtree2, iterative_cdhit, kraken, kraken-build, kraken-filter, kraken-mpa-report, kraken-report, kraken-translate, kraken2, kraken2-build, kraken2-inspect, lighter, metaplasmidspades.py, metaviralspades.py, mlst, nullarbor-json.pl, nullarbor-report.pl, nullarbor.pl, nw_clade, nw_condense, nw_display, nw_distance, nw_duration, nw_ed, nw_gen, nw_indent, nw_labels, nw_match, nw_order, nw_prune, nw_rename, nw_reroot, nw_stats, nw_support, nw_topology, nw_trim, pan_genome_assembly_statistics, pan_genome_core_alignment, pan_genome_post_analysis, pan_genome_reorder_spreadsheet, parallel_all_against_all_blastp, protein_alignment_from_nucleotides, query_pan_genome, quicktree, rnaviralspades.py, roary, roary-create_pan_genome_plots.R, roary-pan_genome_reorder_spreadsheet, roary-query_pan_genome, roary-unique_genes_per_sample, roary2svg.pl, sam_add_rg.pl, shovill, skesa, snippy, snippy-clean_full_aln, snippy-core, snippy-multi, snippy-vcf_extract_subs, snippy-vcf_report, snippy-vcf_to_tab, snp-dists, split_ref_by_bai_datasize.py, tbl2asn-test, transfer_annotation_to_groups, update_version.sh, yapp, snp-sites, fix-sqn-date, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, prank, rsync-ssl, vt, faketime, flash |
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GITHUB
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quay.io/biocontainers/numkit |
shpc-registry automated BioContainers addition for numkit |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/numpy |
shpc-registry automated BioContainers addition for numpy |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
|
quay.io/biocontainers/nvc |
shpc-registry automated BioContainers addition for nvc |
naive_variant_caller.py, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/nwalign3 |
singularity registry hpc automated addition for nwalign3 |
nwalign3, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
|
quay.io/biocontainers/nxtrim |
shpc-registry automated BioContainers addition for nxtrim |
nxtrim |
|
GITHUB
|
quay.io/biocontainers/oakvar |
singularity registry hpc automated addition for oakvar |
elastipubsub5, gdown, io_demo, markdown-it, mqtt5_app, mqtt5_canary, mqtt5canary, ov, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, ucx_info, ucx_perftest, ucx_read_profile, elasticurl, elasticurl_cpp, elastipubsub, tjbench, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, markdown_py, protoc, pygmentize |
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GITHUB
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quay.io/biocontainers/oarfish |
singularity registry hpc automated addition for oarfish |
oarfish |
|
GITHUB
|
quay.io/biocontainers/oases |
shpc-registry automated BioContainers addition for oases |
oases, oases_pipeline.py, velvetg, velveth |
|
GITHUB
|
quay.io/biocontainers/oauth2client |
shpc-registry automated BioContainers addition for oauth2client |
pyrsa-decrypt-bigfile, pyrsa-encrypt-bigfile, easy_install-3.6, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, 2to3-3.6 |
|
GITHUB
|
quay.io/biocontainers/obitools |
shpc-registry automated BioContainers addition for obitools |
ali2consensus, ecodbtaxstat, ecotag, ecotaxspecificity, ecotaxstat, extractreads, extractreads2, illuminapairedend, iptest2, ipython2, ngsfilter, obiaddtaxids, obiannotate, obiclean, obicomplement, obiconvert, obicount, obicut, obidistribute, obiextract, obigrep, obihead, obijoinpairedend, obipr2, obisample, obiselect, obisilva, obisort, obisplit, obistat, obisubset, obitab, obitail, obitaxonomy, obiuniq, oligotag, iptest, ipython, pygmentize, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
|
quay.io/biocontainers/obonet |
singularity registry hpc automated addition for obonet |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/ococo |
shpc-registry automated BioContainers addition for ococo |
ococo |
|
GITHUB
|
quay.io/biocontainers/ocrad |
shpc-registry automated BioContainers addition for ocrad |
ocrad |
|
GITHUB
|
quay.io/biocontainers/octopus |
shpc-registry automated BioContainers addition for octopus |
octopus, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/odamnet |
singularity registry hpc automated addition for odamnet |
odamnet, rqw, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py, rst2xetex.py, rst2xml.py, rstpep2html.py, brotli, normalizer |
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GITHUB
|
quay.io/biocontainers/odgi |
shpc-registry automated BioContainers addition for odgi |
odgi, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
|
quay.io/biocontainers/odose |
shpc-registry automated BioContainers addition for odose |
align_trim_orthologs, align_trim_orthologs.py, bugzscout, bugzscout.py, calculations_new, calculations_new.py, compare_taxa, compare_taxa.py, concatemer_tree, concatemer_tree.py, crosstable_gene_ids, crosstable_gene_ids.py, download_taxa_ncbi, download_taxa_ncbi.py, extract_orthologs, extract_orthologs.py, filter_orthologs, filter_orthologs.py, load_prokaryotes, load_prokaryotes.py, orthomcl_database, orthomcl_database.py, reciprocal_blast_local, reciprocal_blast_local.py, run_codeml, run_codeml.py, run_orthomcl, run_orthomcl.py, run_phipack, run_phipack.py, scatterplot, scatterplot.py, select_taxa, select_taxa.py, shared, shared.py, split_by_taxa, split_by_taxa.py, translate, translate.py, upload_genomes, upload_genomes.py, versions, versions.py, wrapper, wrapper.py, createfontdatachunk.py, enhancer.py, explode.py, gifmaker.py, painter.py, player.py, thresholder.py, viewer.py, pilconvert.py, pildriver.py |
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GITHUB
|
quay.io/biocontainers/olga |
singularity registry hpc automated addition for olga |
olga-compute_pgen, olga-generate_sequences, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
|
quay.io/biocontainers/oligoarrayaux |
shpc-registry automated BioContainers addition for oligoarrayaux |
ct-energy, ct2rnaml, h-num.pl, hybrid-min, hybrid-ss-min, melt.pl, ss-count.pl |
|
GITHUB
|
quay.io/biocontainers/oligomap |
singularity registry hpc automated addition for oligomap |
oligomap |
|
GITHUB
|
quay.io/biocontainers/oligotyping |
shpc-registry automated BioContainers addition for oligotyping |
createlang, decompose, django-admin, django-admin.py, django-admin.pyc, droplang, entropy-analysis, epsg_tr.py, esri2wkt.py, gcps2vec.py, gcps2wld.py, gdal2tiles.py, gdal2xyz.py, gdal_auth.py, gdal_calc.py, gdal_edit.py, gdal_fillnodata.py, gdal_merge.py, gdal_polygonize.py, gdal_proximity.py, gdal_retile.py, gdal_sieve.py, gdalchksum.py, gdalcompare.py, gdalident.py, gdalimport.py, gdalmove.py, gdalserver, mkgraticule.py, nad2bin, o-bars-for-each-column.R, o-boxplots.R, o-cluster-analysis.R, o-create-GG-alignment-template-from-taxon, o-fasta-length-distribution, o-gen-dicts-for-qual-stats, o-gen-stackbar-with-sets-from-ENVIRONMENT, o-generate-consensus-from-alignment, o-generate-environment-from-matrix-counts, o-generate-exclusive-figures, o-generate-gephi-network-file, o-generate-html-output, o-generate-matching-qual-file, o-generate-matrix-files-from-ENVIRONMENT, o-generate-oligo-base-networks, o-get-reads-from-fasta, o-get-sample-info-from-fasta, o-heatmap.R, o-keep-or-remove-samples-from-fasta, o-lines-for-each-column.R, o-metaMDS-analysis-with-metadata.R, o-metaMDS-analysis.R, o-pad-with-gaps, o-populate-datasets-from-VAMPS-download, o-remove-gaps, o-sequence-distances, o-smart-trim, o-stackbar.R, o-subsample-fasta-file, o-subsample-matrix-file, o-treat-homopolymer-regions, o-trim, o-trim-uninformative-columns-from-alignment, o-visualize-distance-matrix.R, o-visualize-qual-scores-along-columns.py, oligotype, pct2rgb.py, pg_receivexlog, pg_resetxlog, pg_xlogdump, pylupdate4, pyrcc4, pyuic4, qdoc3, qmlviewer, qt3to4, qtconfig, qttracereplay, rgb2pct.py, createfontdatachunk.py, testepsg, enhancer.py, explode.py, gifmaker.py, painter.py, player.py, thresholder.py, viewer.py, dap-config |
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GITHUB
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quay.io/biocontainers/olivar |
singularity registry hpc automated addition for olivar |
f2py3.11, olivar, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl, sort-table |
|
GITHUB
|
quay.io/biocontainers/omamer |
singularity registry hpc automated addition for omamer |
omamer, cpuinfo, h5fuse.sh, mpg123, mpg123-id3dump, mpg123-strip, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, libgcrypt-config, mpicalc, yat2m, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, attr, balsam, getfattr, lprodump, lrelease-pro |
|
GITHUB
|
quay.io/biocontainers/omark |
singularity registry hpc automated addition for omark |
omamer, omark, cpuinfo, h5fuse.sh, mpg123, mpg123-id3dump, mpg123-strip, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, libgcrypt-config, mpicalc, yat2m, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, attr, balsam, getfattr, lprodump, lrelease-pro |
|
GITHUB
|
quay.io/biocontainers/omero-py |
shpc-registry automated BioContainers addition for omero-py |
omero, slice2py, futurize, pasteurize, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc |
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GITHUB
|
quay.io/biocontainers/omssa |
shpc-registry automated BioContainers addition for omssa |
omssa2pepXML, omssacl, omssamerge |
|
GITHUB
|
quay.io/biocontainers/oncocnv |
singularity registry hpc automated addition for oncocnv |
ONCOCNV_getCounts.pl, createTargetGC.pl, perChrVisualization.R, processControl.R, processSamples.R, fasta-sanitize.pl, shiftBed, plot-ampliconstats, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap, groupBy, intersectBed, linksBed, mapBed, maskFastaFromBed |
|
GITHUB
|
quay.io/biocontainers/oncofuse |
shpc-registry automated BioContainers addition for oncofuse |
oncofuse, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/oncogemini |
shpc-registry automated BioContainers addition for oncogemini |
oncogemini, peddy, toolshed, vcf2db.py, vcfanno, unidecode, cyvcf2, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py |
|
GITHUB
|
quay.io/biocontainers/oncopipe |
shpc-registry automated BioContainers addition for oncopipe |
snakemake, snakemake-bash-completion, jp.py, cxpm, sxpm, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign |
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GITHUB
|
quay.io/biocontainers/oncotator |
shpc-registry automated BioContainers addition for oncotator |
Oncotator, addDatasourceMd5, get_exons, initializeDatasource, initializeTranscriptDatasource, oncotator, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
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GITHUB
|
quay.io/biocontainers/onehot2seq |
shpc-registry automated BioContainers addition for onehot2seq |
onehot2seq, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/ont-fast5-api |
shpc-registry automated BioContainers addition for ont-fast5-api |
check_compression, compress_fast5, demux_fast5, fast5_subset, multi_to_single_fast5, single_to_multi_fast5, tar, f2py3.10, h5clear, h5format_convert, h5watch, h5fc, 2to3-3.10, idle3.10, pydoc3.10, python3.1 |
|
GITHUB
|
quay.io/biocontainers/ont-modkit |
singularity registry hpc automated addition for ont-modkit |
modkit |
|
GITHUB
|
quay.io/biocontainers/ont-tombo |
shpc-registry automated BioContainers addition for ont-tombo |
tombo, unit2, minimap2.py, faidx, f2py2, f2py2.7, tqdm, futurize, pasteurize, python2-config, python2.7-config |
|
GITHUB
|
quay.io/biocontainers/ont_vbz_hdf_plugin |
shpc-registry automated BioContainers addition for ont_vbz_hdf_plugin |
mirror_server, mirror_server_stop, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy |
|
GITHUB
|
quay.io/biocontainers/ontime |
singularity registry hpc automated addition for ontime |
ontime |
|
GITHUB
|
quay.io/biocontainers/onto2nx |
shpc-registry automated BioContainers addition for onto2nx |
csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, chardetect, 2to3-3.6, idle3.6, pydoc3.6, python3.6 |
|
GITHUB
|
quay.io/biocontainers/ope |
shpc-registry automated BioContainers addition for ope |
ope, openssl, perl5.30.3, screed, parsort, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh |
|
GITHUB
|
quay.io/biocontainers/open-cravat |
shpc-registry automated BioContainers addition for open-cravat |
oc, x86_64-conda_cos7-linux-gnu-ld, vba_extract.py, vcf_sample_filter.py, vcf_filter.py, vcf_melt, markdown_py, normalizer, chardetect, 2to3-3.9, idle3.9 |
|
GITHUB
|
quay.io/biocontainers/openbabel |
shpc-registry automated BioContainers addition for openbabel |
obfitall, obmm, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop |
|
GITHUB
|
quay.io/biocontainers/opencontactcli |
shpc-registry automated BioContainers addition for opencontactcli |
OpenContactCLI, contactgui.f, inputgui.f, ljresid, ljresidn, main_cli.py, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/openduck |
shpc-registry automated BioContainers addition for openduck |
duck_chunk, duck_prepare_sys, duck_smd_runs, frag_duck, get_wqb, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/openjdk |
shpc-registry automated BioContainers addition for openjdk |
extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/openmg |
shpc-registry automated BioContainers addition for openmg |
apt, openmg, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/openms-thirdparty |
shpc-registry automated BioContainers addition for openms-thirdparty |
AccurateMassSearch, AssayGeneratorMetabo, BaselineFilter, CVInspector, ClusterMassTraces, ClusterMassTracesByPrecursor, CometAdapter, CompNovo, CompNovoCID, ConsensusID, ConsensusMapNormalizer, CruxAdapter, DTAExtractor, DatabaseFilter, DatabaseSuitability, DeMeanderize, Decharger, DecoyDatabase, Digestor, DigestorMotif, EICExtractor, ERPairFinder, Epifany, ExternalCalibration, FFEval, FalseDiscoveryRate, FeatureFinderCentroided, FeatureFinderIdentification, FeatureFinderIsotopeWavelet, FeatureFinderMRM, FeatureFinderMetabo, FeatureFinderMetaboIdent, FeatureFinderMultiplex, FeatureLinkerLabeled, FeatureLinkerUnlabeled, FeatureLinkerUnlabeledKD, FeatureLinkerUnlabeledQT, Fido, FidoAdapter, FidoChooseParameters, FileConverter, FileFilter, FileInfo, FileMerger, FuzzyDiff, GNPSExport, GenericWrapper, HighResPrecursorMassCorrector, IDConflictResolver, IDDecoyProbability, IDExtractor, IDFileConverter, IDFilter, IDMapper, IDMassAccuracy, IDMerger, IDPosteriorErrorProbability, IDRTCalibration, IDRipper, IDScoreSwitcher, IDSplitter, InclusionExclusionListCreator, InternalCalibration, IsobaricAnalyzer, LabeledEval, LuciphorAdapter, MRMMapper, MRMPairFinder, MRMTransitionGroupPicker, MSFraggerAdapter, MSGFPlusAdapter, MSSimulator, MSstatsConverter, MaRaClusterAdapter, MapAlignerIdentification, MapAlignerPoseClustering, MapAlignerSpectrum, MapAlignerTreeGuided, MapNormalizer, MapRTTransformer, MapStatistics, MascotAdapter, MascotAdapterOnline, MassCalculator, MassTraceExtractor, MetaProSIP, MetaboliteAdductDecharger, MetaboliteSpectralMatcher, MultiplexResolver, MyriMatchAdapter, MzMLSplitter, MzTabExporter, NoiseFilterGaussian, NoiseFilterSGolay, NovorAdapter, NucleicAcidSearchEngine, OMSSAAdapter, OpenMSDatabasesInfo, OpenMSInfo, OpenPepXL, OpenPepXLLF, OpenSwathAnalyzer, OpenSwathAssayGenerator, OpenSwathChromatogramExtractor, OpenSwathConfidenceScoring, OpenSwathDIAPreScoring, OpenSwathDecoyGenerator, OpenSwathFeatureXMLToTSV, OpenSwathFileSplitter, OpenSwathMzMLFileCacher, OpenSwathRTNormalizer, OpenSwathRewriteToFeatureXML, OpenSwathWorkflow, PSMFeatureExtractor, PTModel, PTPredict, PeakPickerHiRes, PeakPickerIterative, PeakPickerWavelet, PepNovoAdapter, PeptideIndexer, PercolatorAdapter, PhosphoScoring, PrecursorIonSelector, PrecursorMassCorrector, ProteinInference, ProteinQuantifier, ProteinResolver, ProteomicsLFQ, QCCalculator, QCEmbedder, QCExporter, QCExtractor, QCImporter, QCMerger, QCShrinker, QualityControl, RNADigestor, RNAMassCalculator, RNPxlSearch, RNPxlXICFilter, RTEvaluation, RTModel, RTPredict, SeedListGenerator, SemanticValidator, SequenceCoverageCalculator, SimpleSearchEngine, SiriusAdapter, SpecLibCreator, SpecLibSearcher, SpectraFilterBernNorm, SpectraFilterMarkerMower, SpectraFilterNLargest, SpectraFilterNormalizer, SpectraFilterParentPeakMower, SpectraFilterScaler, SpectraFilterSqrtMower, SpectraFilterThresholdMower, SpectraFilterWindowMower, SpectraMerger, SpectraSTSearchAdapter, StaticModification, SvmTheoreticalSpectrumGeneratorTrainer, TICCalculator, TOFCalibration, TargetedFileConverter, TextExporter, ThermoRawFileParser, ThermoRawFileParser.exe, ThermoRawFileParser.sh, TransformationEvaluation, TriqlerConverter, XFDR, XMLValidator, XTandemAdapter, adjustScanRankerScoreByGroup, comet, comet.exe, crux, csc, csc-dim, csi, directag, idpAssemble, idpQonvert, idpQuery, illinkanalyzer, luciphor2, monograph, msgf2pin, msgf_plus, myrimatch, nunit-console, nunit-console2, nunit-console4, pepitome, pepnovo, percolator, quameter, qvality, sirius, sirius-gui, sqt2pin, tagrecon, tandem2pin, thermorawfileparser, vbc, xtandem, mono-package-runtime, sgen-grep-binprot, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr |
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GITHUB
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quay.io/biocontainers/openms-tools |
shpc-registry automated BioContainers addition for openms-tools |
AccurateMassSearch, AssayGeneratorMetabo, BaselineFilter, CVInspector, ClusterMassTraces, ClusterMassTracesByPrecursor, CometAdapter, CompNovo, CompNovoCID, ConsensusID, ConsensusMapNormalizer, CruxAdapter, DTAExtractor, DatabaseFilter, DeMeanderize, Decharger, DecoyDatabase, Digestor, DigestorMotif, EICExtractor, ERPairFinder, ExternalCalibration, FFEval, FalseDiscoveryRate, FeatureFinderCentroided, FeatureFinderIdentification, FeatureFinderIsotopeWavelet, FeatureFinderMRM, FeatureFinderMetabo, FeatureFinderMultiplex, FeatureFinderSuperHirn, FeatureLinkerLabeled, FeatureLinkerUnlabeled, FeatureLinkerUnlabeledKD, FeatureLinkerUnlabeledQT, FidoAdapter, FileConverter, FileFilter, FileInfo, FileMerger, FuzzyDiff, GenericWrapper, HighResPrecursorMassCorrector, IDConflictResolver, IDDecoyProbability, IDExtractor, IDFileConverter, IDFilter, IDMapper, IDMassAccuracy, IDMerger, IDPosteriorErrorProbability, IDRTCalibration, IDRipper, IDScoreSwitcher, IDSplitter, InclusionExclusionListCreator, InspectAdapter, InternalCalibration, IsobaricAnalyzer, LabeledEval, LowMemPeakPickerHiRes, LowMemPeakPickerHiResRandomAccess, LuciphorAdapter, MRMMapper, MRMPairFinder, MRMTransitionGroupPicker, MSFraggerAdapter, MSGFPlusAdapter, MSSimulator, MSstatsConverter, MaRaClusterAdapter, MapAlignerIdentification, MapAlignerPoseClustering, MapAlignerSpectrum, MapNormalizer, MapRTTransformer, MapStatistics, MascotAdapter, MascotAdapterOnline, MassCalculator, MassTraceExtractor, MetaProSIP, MetaboliteAdductDecharger, MetaboliteSpectralMatcher, MultiplexResolver, MyriMatchAdapter, MzMLSplitter, MzTabExporter, NoiseFilterGaussian, NoiseFilterSGolay, NovorAdapter, OMSSAAdapter, OpenMSInfo, OpenPepXL, OpenPepXLLF, OpenSwathAnalyzer, OpenSwathAssayGenerator, OpenSwathChromatogramExtractor, OpenSwathConfidenceScoring, OpenSwathDIAPreScoring, OpenSwathDecoyGenerator, OpenSwathFeatureXMLToTSV, OpenSwathFileSplitter, OpenSwathMzMLFileCacher, OpenSwathRTNormalizer, OpenSwathRewriteToFeatureXML, OpenSwathWorkflow, PSMFeatureExtractor, PTModel, PTPredict, PeakPickerHiRes, PeakPickerIterative, PeakPickerWavelet, PepNovoAdapter, PeptideIndexer, PercolatorAdapter, PhosphoScoring, PrecursorIonSelector, PrecursorMassCorrector, ProteinInference, ProteinQuantifier, ProteinResolver, QCCalculator, QCEmbedder, QCExporter, QCExtractor, QCImporter, QCMerger, QCShrinker, RNADigestor, RNPxlSearch, RNPxlXICFilter, RTEvaluation, RTModel, RTPredict, SeedListGenerator, SemanticValidator, SequenceCoverageCalculator, SimpleSearchEngine, SiriusAdapter, SpecLibCreator, SpecLibSearcher, SpectraFilterBernNorm, SpectraFilterMarkerMower, SpectraFilterNLargest, SpectraFilterNormalizer, SpectraFilterParentPeakMower, SpectraFilterScaler, SpectraFilterSqrtMower, SpectraFilterThresholdMower, SpectraFilterWindowMower, SpectraMerger, SpectraSTSearchAdapter, SvmTheoreticalSpectrumGeneratorTrainer, TICCalculator, TOFCalibration, TargetedFileConverter, TextExporter, TransformationEvaluation, XFDR, XMLValidator, XTandemAdapter, svm-predict, svm-scale, svm-train, CreateDOMDocument, DOMCount, DOMPrint, EnumVal, MemParse, PParse, PSVIWriter |
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GITHUB
|
quay.io/biocontainers/openms |
shpc-registry automated BioContainers addition for openms |
|
|
GITHUB
|
quay.io/biocontainers/openpyxl |
shpc-registry automated BioContainers addition for openpyxl |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/openslide-python |
shpc-registry automated BioContainers addition for openslide-python |
aclocal.bak, autoheader.bak, autom4te.bak, automake.bak, autoreconf.bak, autoscan.bak, autoupdate.bak, ifnames.bak, openslide-quickhash1sum, openslide-show-properties, openslide-write-png, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, 2to3-3.6 |
|
GITHUB
|
quay.io/biocontainers/openslide |
shpc-registry automated BioContainers addition for openslide |
|
|
GITHUB
|
quay.io/biocontainers/opentargets-urlzsource |
shpc-registry automated BioContainers addition for opentargets-urlzsource |
futurize, pasteurize, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/opentargets-validator |
shpc-registry automated BioContainers addition for opentargets-validator |
opentargets_validator, jsonschema, normalizer, futurize, pasteurize, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
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GITHUB
|
quay.io/biocontainers/opentargets |
shpc-registry automated BioContainers addition for opentargets |
|
|
GITHUB
|
quay.io/biocontainers/opfi |
shpc-registry automated BioContainers addition for opfi |
grf-alignment, grf-alignment2, grf-dbn, grf-filter, grf-intersperse, grf-main, grf-mite-cluster, grf-nest, hypothesis, pilercr, filter-table, spdi2prod, mmseqs, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl |
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GITHUB
|
quay.io/biocontainers/opsin |
shpc-registry automated BioContainers addition for opsin |
opsin, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/optbuild |
shpc-registry automated BioContainers addition for optbuild |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/optimir |
shpc-registry automated BioContainers addition for optimir |
optimir, cutadapt, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, bowtie2, bowtie2-align-l, bowtie2-align-s |
|
GITHUB
|
quay.io/biocontainers/optitype |
shpc-registry automated BioContainers addition for optitype |
OSSolverService, OptiTypePipeline.py, checkCopyright, checkcopyright, computeconf, config.ini, dispatch_srvr, evaluate_xhat, hlatyper.py, kill_pyro_mip_servers, launch_pyro_mip_servers, lbin, lpython, model.py, ossolverservice, phsolverserver, pyomo, pyomo_ns, pyomo_nsc, pyomo_old, pyomo_python, pypi_downloads, pyro_mip_server, pyutilib_test_driver, razers3, readsol, replaceCopyright, replacecopyright, results_schema, runbenders, runef, runph, scenariotreeserver, test.pyomo, test.pyutilib, nosetests-3.9, nosetests, pt2to3, ptdump, ptrepack, pttree, glpsol, futurize, pasteurize, fasta-sanitize.pl |
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GITHUB
|
quay.io/biocontainers/optplus |
shpc-registry automated BioContainers addition for optplus |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/orfanage |
singularity registry hpc automated addition for orfanage |
orfanage |
|
GITHUB
|
quay.io/biocontainers/orfipy |
shpc-registry automated BioContainers addition for orfipy |
orfipy, pyfastx, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/orfm |
shpc-registry automated BioContainers addition for orfm |
orfm |
|
GITHUB
|
quay.io/biocontainers/orfquant |
shpc-registry automated BioContainers addition for orfquant |
pandoc |
|
GITHUB
|
quay.io/biocontainers/orientagraph |
shpc-registry automated BioContainers addition for orientagraph |
f4ratio, fourpop, orientagraph, threepop |
|
GITHUB
|
quay.io/biocontainers/orientationpy |
singularity registry hpc automated addition for orientationpy |
numba, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tqdm, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/orna |
singularity registry hpc automated addition for orna |
ORNA, mirror_server, mirror_server_stop, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp, h5perf_serial, h5redeploy, h5repack, h5repart, h5stat, h5unjam, h5dump, h5cc |
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GITHUB
|
quay.io/biocontainers/orsum |
shpc-registry automated BioContainers addition for orsum |
orsum.py, plotFunctions.py, termCombinationLib.py, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp |
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GITHUB
|
quay.io/biocontainers/orthanq |
singularity registry hpc automated addition for orthanq |
amdgpu-arch, analyze-build, bugpoint, c-index-test, clang, clang++, clang-17, clang-apply-replacements, clang-apply-replacements-17, clang-change-namespace, clang-change-namespace-17, clang-check, clang-check-17, clang-cl, clang-cpp, clang-doc, clang-doc-17, clang-extdef-mapping, clang-extdef-mapping-17, clang-format, clang-format-17, clang-include-cleaner, clang-include-cleaner-17, clang-include-fixer, clang-include-fixer-17, clang-linker-wrapper, clang-linker-wrapper-17, clang-move, clang-move-17, clang-offload-bundler, clang-offload-bundler-17, clang-offload-packager, clang-offload-packager-17, clang-pseudo, clang-pseudo-17, clang-query, clang-query-17, clang-refactor, clang-refactor-17, clang-rename, clang-rename-17, clang-reorder-fields, clang-reorder-fields-17, clang-repl, clang-repl-17, clang-scan-deps, clang-scan-deps-17, clang-tidy, clang-tidy-17, clangd, diagtool, dsymutil, find-all-symbols, git-clang-format, hmaptool, intercept-build, llc, lli, llvm-addr2line, llvm-ar, llvm-as, llvm-bcanalyzer, llvm-bitcode-strip, llvm-c-test, llvm-cat, llvm-cfi-verify, llvm-config, llvm-cov, llvm-cvtres, llvm-cxxdump, llvm-cxxfilt, llvm-cxxmap, llvm-debuginfo-analyzer, llvm-debuginfod, llvm-debuginfod-find, llvm-diff, llvm-dis, llvm-dlltool, llvm-dwarfdump, llvm-dwarfutil, llvm-dwp, llvm-exegesis, llvm-extract, llvm-gsymutil, llvm-ifs, llvm-install-name-tool, llvm-jitlink, llvm-jitlistener, llvm-lib, llvm-libtool-darwin, llvm-link, llvm-lipo, llvm-lto, llvm-lto2, llvm-mc, llvm-mca, llvm-ml, llvm-modextract, llvm-mt, llvm-nm, llvm-objcopy, llvm-objdump, llvm-opt-report, llvm-otool, llvm-pdbutil, llvm-profdata, llvm-profgen, llvm-ranlib, llvm-rc, llvm-readelf, llvm-readobj, llvm-reduce, llvm-remark-size-diff, llvm-remarkutil, llvm-rtdyld, llvm-sim, llvm-size, llvm-split, llvm-stress, llvm-strings, llvm-strip, llvm-symbolizer, llvm-tapi-diff, llvm-tblgen, llvm-tli-checker, llvm-undname, llvm-windres, llvm-xray, modularize, nvptx-arch, opt, orthanq, pp-trace, run-clang-tidy, sancov, sanstats, scan-build, scan-build-py, scan-view, verify-uselistorder, x86_64-conda-linux-gnu-clang, x86_64-conda-linux-gnu-clang++, x86_64-conda-linux-gnu-clang++.cfg, x86_64-conda-linux-gnu-clang.cfg, cbc, clp, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp, h5perf_serial, h5redeploy, h5repack, h5repart, h5stat, h5unjam, h5dump, h5cc |
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GITHUB
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quay.io/biocontainers/orthodb |
singularity registry hpc automated addition for orthodb |
idle3.13, pydoc3.13, python3.13, python3.13-config, normalizer |
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GITHUB
|
quay.io/biocontainers/orthofinder |
shpc-registry automated BioContainers addition for orthofinder |
convert_orthofinder_tree_ids.py, fastme, iqtree2, make_ultrametric.py, orthofinder, primary_transcript.py, raxml-ng, raxml-ng-mpi, iqtree, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray |
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GITHUB
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quay.io/biocontainers/orthofisher |
singularity registry hpc automated addition for orthofisher |
orthofisher, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tqdm |
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GITHUB
|
quay.io/biocontainers/orthoflow |
singularity registry hpc automated addition for orthoflow |
orthoflow, phytest, treetime, markdown-it, flask, yte, plac_runner.py, docutils, pulptest, cbc, clp, humanfriendly, snakemake, snakemake-bash-completion, tabulate, hb-info, jupyter-trust, py.test, pytest, diffimg, jupyter, jupyter-migrate, jupyter-troubleshoot, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl |
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GITHUB
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quay.io/biocontainers/orthologer |
singularity registry hpc automated addition for orthologer |
bash, bashbug, brhclus, build_import_file, cmpclus, evolrate, extractpairs, findbrh, getclus, getinpar, indexdb, mergeinpar, orthologer, orthomapper, splitgenes, statclus, bsmp2info, fsa2xml, gbf2info, just-top-hits, systematic-mutations, rsync-ssl, aria2c, rsync, gawk-5.3.0, xxh128sum, xxh32sum, xxh64sum, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme |
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GITHUB
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quay.io/biocontainers/orthomcl |
shpc-registry automated BioContainers addition for orthomcl |
orthomclAdjustFasta, orthomclBlastParser, orthomclDropSchema, orthomclDumpPairsFiles, orthomclExtractProteinIdsFromGroupsFile, orthomclExtractProteinPairsFromGroupsFile, orthomclFilterFasta, orthomclInstallSchema, orthomclInstallSchema.sql, orthomclLoadBlast, orthomclLoadBlast.sql, orthomclMclToGroups, orthomclPairs, orthomclReduceFasta, orthomclReduceGroups, orthomclRemoveIdenticalGroups, orthomclSingletons, orthomclSortGroupMembersByScore, orthomclSortGroupsFile, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray, mcxassemble |
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GITHUB
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quay.io/biocontainers/osra |
shpc-registry automated BioContainers addition for osra |
GraphicsMagick++-config, GraphicsMagick-config, GraphicsMagickWand-config, babel, convertfilestopdf, convertfilestops, convertformat, convertsegfilestopdf, convertsegfilestops, converttopdf, converttops, fileinfo, font2c, gm, gocr, gocr.tcl, mkbitmap, ocrad, osra, potrace, printimage, printsplitimage, printtiff, splitimage2pdf, tesseract, wftopfa, xtractprotos, roundtrip, gnuplot, pdfdetach, pdffonts, pdfimages, pdfinfo, pdfseparate, pdftocairo, pdftohtml, pdftoppm |
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GITHUB
|
quay.io/biocontainers/ostir |
shpc-registry automated BioContainers addition for ostir |
ostir, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold |
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GITHUB
|
quay.io/biocontainers/outrigger |
shpc-registry automated BioContainers addition for outrigger |
outrigger, coverage, gffutils-cli, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py |
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GITHUB
|
quay.io/biocontainers/p7zip |
shpc-registry automated BioContainers addition for p7zip |
7z, 7za, 7zr |
|
GITHUB
|
quay.io/biocontainers/pacu_snp |
singularity registry hpc automated addition for pacu_snp |
PACU, PACU_map, count_recombinations_per_gene.py, extract_gubbins_clade.py, figtree, generate_files_for_clade_analysis.py, generate_ska_alignment.py, gubbins, gubbins_alignment_checker.py, mask_gubbins_aln.py, plot_gubbins.R, rapidnj, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex, rst2xml, run_gubbins.py, ska, snp-dists, sumlabels, sumtrees, eido, get_gprof, raxml-ng, raxml-ng-mpi, pandoc-lua, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, protoc-25.3.0, iqtree2, iqtree, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, seqkit, annot-tsv, jwebserver, pandoc-server, trimmomatic |
|
GITHUB
|
quay.io/biocontainers/pafpy |
shpc-registry automated BioContainers addition for pafpy |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/pairix |
shpc-registry automated BioContainers addition for pairix |
pairix, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairs_merger, process_merged_nodup.sh |
|
GITHUB
|
quay.io/biocontainers/pairsnp |
shpc-registry automated BioContainers addition for pairsnp |
pairsnp |
|
GITHUB
|
quay.io/biocontainers/pairtools |
shpc-registry automated BioContainers addition for pairtools |
pairtools, pbgzip, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix, pairs_merger |
|
GITHUB
|
quay.io/biocontainers/pal2nal |
shpc-registry automated BioContainers addition for pal2nal |
pal2nal.pl, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/pal_finder |
shpc-registry automated BioContainers addition for pal_finder |
long_seq_tm_test, ntdpal, oligotm, pal_finder, primer3_core, perl5.32.0, streamzip |
|
GITHUB
|
quay.io/biocontainers/paladin |
shpc-registry automated BioContainers addition for paladin |
paladin |
|
GITHUB
|
quay.io/biocontainers/palantir |
singularity registry hpc automated addition for palantir |
progressbar, protoc-25.3.0, h5tools_test_utils, igraph, scanpy, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, h5delete, numba, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin |
|
GITHUB
|
quay.io/biocontainers/palikiss |
singularity registry hpc automated addition for palikiss |
addRNAoptions.pl, gapc, pAliKiss, pAliKiss_enforce, pAliKiss_enforce_window, pAliKiss_eval, pAliKiss_local, pAliKiss_local_window, pAliKiss_mfe, pAliKiss_mfe_window, pAliKiss_probs, pAliKiss_probs_window, pAliKiss_rep_consensus, pAliKiss_rep_mis, pAliKiss_sci, pAliKiss_shapes, pAliKiss_shapes_window, pAliKiss_subopt, pAliKiss_subopt_window |
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GITHUB
|
quay.io/biocontainers/paml |
shpc-registry automated BioContainers addition for paml |
baseml, basemlg, chi2, codeml, evolver, infinitesites, mcmctree, pamp, yn00 |
|
GITHUB
|
quay.io/biocontainers/pan-plaster |
shpc-registry automated BioContainers addition for pan-plaster |
delta2vcf, plaster, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot, nucmer, promer, repeat-match, show-aligns |
|
GITHUB
|
quay.io/biocontainers/panacota |
shpc-registry automated BioContainers addition for panacota |
PanACoTA, fastme, gimme_taxa.py, iqtree2, ncbi-genome-download, ngd, quicktree, run_panacota.py, tbl2asn-test, fix-sqn-date, faketime, real-tbl2asn, prokka-abricate_to_fasta_db, iqtree, prokka, prokka-biocyc_to_fasta_db, prokka-build_kingdom_dbs, prokka-cdd_to_hmm, prokka-clusters_to_hmm |
|
GITHUB
|
quay.io/biocontainers/panacus |
singularity registry hpc automated addition for panacus |
panacus, panacus-visualize, tjbench, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/panaroo |
shpc-registry automated BioContainers addition for panaroo |
add_gff3_locus_tags.py, add_polypeptide_to_gff3_gene_models.py, append_to_column_9_value.py, append_to_fasta_header.py, append_to_fastq_read_header.py, calculate_gene_coverage_from_assembly.py, calculate_query_coverage_by_blast.py, check_for_embedded_fasta_headers.py, check_gff_for_internal_stops.py, compare_gene_structures.py, convert_aat_btab_to_gff3.py, convert_augustus_to_gff3.py, convert_blast_btab_to_bed.py, convert_blast_btab_to_gff3.py, convert_cegma_gff_to_gff3.py, convert_cufflinks_gtf_to_gff3.py, convert_fasta_contigs_to_gff3.py, convert_fastq_to_fasta.py, convert_genbank_to_gff3.py, convert_gff3_to_bed.py, convert_gff3_to_gbk.py, convert_gff3_to_gene_association_format.py, convert_gff3_to_ncbi_tbl.py, convert_gff_to_ncbi_gff3.py, convert_glimmerHMM_gff_to_gff3.py, convert_htab_to_bed.py, convert_metagenemark_gff_to_gff3.py, convert_pasa_gff_to_models.py, convert_prodigal_to_gff3.py, convert_scipio_gff_to_gff3.py, correct_gff3_CDS_phase_column.py, create_rsem_html_table.py, create_taxonomic_profile_from_blast.py, create_taxonomy_db.py, detect_inverted_repeats.py, download_assemblies_from_genbank.py, eggnog_to_sqlite3.py, extend_genes_to_stops.py, extract_fasta_regions.py, fasta_base_content.py, fasta_simple_stats.py, fasta_size_distribution_plot.py, fastq_simple_stats.py, filter_fasta_by_abundance.py, filter_fasta_by_header_regex.py, filter_fasta_by_type.py, filter_fastq_by_N_content.py, filter_gff3_by_id_list.py, filter_uniref_by_repid.py, filter_uniref_by_taxonomy.py, get_mpilup_from_id_list.py, hmmlib_to_sqlite3.py, interleave_fastq.py, join_columnar_files.py, list_biocode.py, make_cufflinks_ids_unique.py, make_go_index.py, make_go_slim.py, make_go_slim_index.py, mark_partial_genes.py, merge_bam_files.py, merge_fasta_files_and_uniquify_ids.py, merge_masked_fasta_files.py, merge_predicted_gff3.py, panaroo, panaroo-extract-gene, panaroo-filter-pa, panaroo-fmg, panaroo-gene-neighbourhood, panaroo-generate-gffs, panaroo-img, panaroo-integrate, panaroo-merge, panaroo-msa, panaroo-plot-abundance, panaroo-qc, panaroo-spydrpick, prepend_to_fasta_header.py, prokka-make_tarball, pwiz.py, randomly_subsample_fastq.py, reformat_fasta_residue_lengths.py, remove_duplicate_features.py, remove_duplicate_sequences.py, remove_masked_gene_models.py, remove_orphaned_features.py, reorient_sequences_by_id.py, replace_gff_type_column_value.py, replace_homopolymeric_repeats_with_Ns.py, report_basic_gff_model_agreement.py, report_coverage_gaps.py, report_gff3_statistics.py, report_gff_intron_and_intergenic_stats.py, report_go_slim_counts.py, report_or_replace_nonstandard_residues.py, reverse_misordered_cds_coords.py, run_prokka, select_training_and_evaluation_transcripts.py, set_source_column.py, split_fasta_into_even_files.py, split_interleaved_sequence_file.py, split_isoforms_into_individual_genes.py, split_molecules_on_gaps.py, subsample_fasta.py, taxadb, tigrfam_info_to_sqlite3.py, uniprot_sprot_to_sqlite3.py, uniref_to_sqlite3.py, update_selected_column9_values.py, validate_fasta.py, validate_feature_boundaries_on_molecules.py, write_fasta_from_gff.py, prank, prokka, prokka-biocyc_to_fasta_db, prokka-build_kingdom_dbs, prokka-cdd_to_hmm, prokka-clusters_to_hmm, prokka-genbank_to_fasta_db, prokka-genpept_to_fasta_db, prokka-hamap_to_hmm, prokka-tigrfams_to_hmm |
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GITHUB
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quay.io/biocontainers/pancake |
shpc-registry automated BioContainers addition for pancake |
pancake, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/pandas |
shpc-registry automated BioContainers addition for pandas |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/pandaseq |
shpc-registry automated BioContainers addition for pandaseq |
pandaseq, pandaseq-checkid, pandaseq-diff, pandaseq-hang, pandaxs |
|
GITHUB
|
quay.io/biocontainers/pandoc |
shpc-registry automated BioContainers addition for pandoc |
pandoc, pandoc-citeproc |
|
GITHUB
|
quay.io/biocontainers/pandora |
shpc-registry automated BioContainers addition for pandora |
pandora |
|
GITHUB
|
quay.io/biocontainers/panfeed |
singularity registry hpc automated addition for panfeed |
panfeed, panfeed-get-clusters, panfeed-get-kmers, panfeed-plot, tjbench, f2py3.11, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc |
|
GITHUB
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quay.io/biocontainers/pango-collapse |
singularity registry hpc automated addition for pango-collapse |
pango-collapse, cmark, futurize, pasteurize, pygmentize, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config |
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GITHUB
|
quay.io/biocontainers/pango-designation |
shpc-registry automated BioContainers addition for pango-designation |
pango_designation, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/pango_aliasor |
singularity registry hpc automated addition for pango_aliasor |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/pangolearn |
shpc-registry automated BioContainers addition for pangolearn |
pangoLEARN, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/pangolin-data |
singularity registry hpc automated addition for pangolin-data |
pangolin_data, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/pangolin |
shpc-registry automated BioContainers addition for pangolin |
constellations, extract_definitions.py, faToVcf, fido2-assert, fido2-cred, fido2-token, git-lfs, gofasta, matOptimize, matUtils, pangolearn.smk, pangolin, pangolin_data, preprocessing.smk, ripples, scorpio, scp, sftp, ssh, ssh-add, ssh-agent, ssh-keygen, ssh-keyscan, sshd, type_constellations.py, usher, usher.smk, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun |
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GITHUB
|
quay.io/biocontainers/pangu |
singularity registry hpc automated addition for pangu |
pangu, minimap2.py, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/pangwes |
singularity registry hpc automated addition for pangwes |
SpydrPick, cuttlefish, gfa1_parser, gwes_plot.r, unitig_distance, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/panisa |
singularity registry hpc automated addition for panisa |
ISFinder_search.py, panISa.py, normalizer, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
|
quay.io/biocontainers/panoct |
shpc-registry automated BioContainers addition for panoct |
gene_order.pl, panoct.pl, paralog_matchtable.pl, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/panoptes-ui |
shpc-registry automated BioContainers addition for panoptes-ui |
panoptes, flask, humanfriendly, py.test, pytest, chardetect, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
|
quay.io/biocontainers/panpasco |
shpc-registry automated BioContainers addition for panpasco |
GenomeAnalysisTK, croco-0.6-config, csslint-0.6, gatk3, gatk3-register, panpasco-distance, panpasco-pipeline, x86_64-conda_cos6-linux-gnu-pkg-config, flash, picard, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, trimmomatic, Magick++-config, MagickCore-config |
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GITHUB
|
quay.io/biocontainers/panphlan |
shpc-registry automated BioContainers addition for panphlan |
misc.py, panphlan_download_pangenome.py, panphlan_map.py, panphlan_profiling.py, perl5.32.0, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s |
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GITHUB
|
quay.io/biocontainers/pantax |
singularity registry hpc automated addition for pantax |
GraphAligner, aln_json_process.py, build_graph.py, data_preprocessing, extract_complete_genome.py, fastix, gaf_filter.py, gaf_filter2.py, genomes_cluster.py, get_genomes_info.py, gfaffix, mash2net.py, net2communities.py, odgi, otu_range.py, paf2net.py, pantax, partition-before-pggb, pggb, prepare_building.py, read_classification.py, seqwish, smoothxg, species_abundance_cal.py, split_approx_mappings_in_chunks.py, staticsData.py, strain_abundance_cal.py, strain_abundance_cal2.py, toolkits.py, vg, wfmash, pybind11-config, time, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave |
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GITHUB
|
quay.io/biocontainers/pantools |
shpc-registry automated BioContainers addition for pantools |
pantools, clm, clmformat, clxdo, kmc, kmc_dump, kmc_tools, mcl, mclblastline, mclcm, mclpipeline |
|
GITHUB
|
quay.io/biocontainers/panx |
shpc-registry automated BioContainers addition for panx |
FastTree.c, ancestral_reconstruction.py, ete, panX.py, temporal_signal.py, timetree_inference.py, createfontdatachunk.py, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray |
|
GITHUB
|
quay.io/biocontainers/papaa |
shpc-registry automated BioContainers addition for papaa |
papaa_alternative_genes_pathwaymapper.py, papaa_apply_weights.py, papaa_compare_within_models.R, papaa_external_sample_pred_targene_classifier.py, papaa_flatten_classifier_directory.py, papaa_map_mutation_class.py, papaa_pancancer_classifier.py, papaa_targene_cell_line_predictions.py, papaa_targene_pathway_count_heatmaps.py, papaa_targene_pharmacology.R, papaa_targene_summary_figures.R, papaa_visualize_decisions.py, papaa_within_disease_analysis.py, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin, jpgicc, linkicc, psicc |
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GITHUB
|
quay.io/biocontainers/paplot |
singularity registry hpc automated addition for paplot |
paplot, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/parafly |
shpc-registry automated BioContainers addition for parafly |
ParaFly |
|
GITHUB
|
quay.io/biocontainers/paragone |
singularity registry hpc automated addition for paragone |
HmmCleaner.pl, ali2fasta.pl, ali2phylip.pl, app-len-ids-ali.pl, change-ids-ali.pl, classify-ali.pl, crc32, decompose.py, export-itol.pl, extract-ali.pl, fasta2ali.pl, fetch-tax.pl, format-tree.pl, frameshiftSimul_final.pl, gawk-5.3.0, gawkbug, idealize-ali.pl, import-itol.pl, inst-abbr-ids.pl, inst-qual-filter.pl, inst-split-seqs.pl, inst-tax-filter.pl, jack-ali-dir.pl, list2mapper.pl, make_gene_folder.py, mask-ali.pl, paragone, pcre2posix_test, phylip2ali.pl, provis, prune-ali.pl, prune-tree.pl, rest-ids-ali.pl, run_treeshrink, run_treeshrink.py, setup-taxdir.pl, split-matrix.pl, split-rates-ali.pl, stock2ali.pl, subs-forest.pl, tab2mapper.pl, tax-filter-ali.pl, tax-mask-ali.pl, tp, transferCleaner.pl, tree2list.pl, tree2tpl.pl, iqtree2, readal, statal, trimal, mpg123, mpg123-id3dump, mpg123-strip, out123, clustalo, dumpsexp, findrule, gpg-error, gpgrt-config, hmac256, iqtree, libgcrypt-config, mpicalc, yat2m, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel |
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GITHUB
|
quay.io/biocontainers/paragraph |
shpc-registry automated BioContainers addition for paragraph |
__init__.py, addVariants.py, compare-alignments.py, findgrm.py, graph-to-fasta, grmpy, grmpy-vcf-merge.py, idxdepth, kmerstats, msa2vcf.py, multigrmpy.py, multiparagraph.py, pam, paragraph, paragraph2dot.py, test_blackbox, test_grm, vcf2paragraph.py, jsonschema, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, htsfile |
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GITHUB
|
quay.io/biocontainers/parallel-fastq-dump |
shpc-registry automated BioContainers addition for parallel-fastq-dump |
abi-dump.2.10.9, align-cache.2.10.9, align-info.2.10.9, bam-load.2.10.9, cache-mgr.2.10.9, cg-load.2.10.9, fasterq-dump-orig.2.10.9, fasterq-dump.2.10.9, fastq-dump-orig.2.10.9, fastq-dump.2.10.9, illumina-dump.2.10.9, kar.2.10.9, kdbmeta.2.10.9, kget.2.10.9, latf-load.2.10.9, md5cp.2.10.9, parallel-fastq-dump, prefetch-orig.2.10.9, prefetch.2.10.9, rcexplain.2.10.9, read-filter-redact.2.10.9, sam-dump-orig.2.10.9, sam-dump.2.10.9, sff-dump.2.10.9, sra-pileup-orig.2.10.9, sra-pileup.2.10.9, sra-sort-cg.2.10.9, sra-sort.2.10.9, sra-stat.2.10.9, srapath-orig.2.10.9, srapath.2.10.9, sratools.2.10.9, test-sra.2.10.9, vdb-config.2.10.9, vdb-copy.2.10.9, vdb-decrypt.2.10.9, vdb-diff.2.10.9, vdb-dump-orig.2.10.9, vdb-dump.2.10.9, vdb-encrypt.2.10.9, vdb-lock.2.10.9, vdb-passwd.2.10.9, vdb-unlock.2.10.9, vdb-validate.2.10.9, align-cache.2, md5cp.2, read-filter-redact.2, sra-sort-cg.2, vdb-diff.2, align-cache, fasterq-dump-orig, fastq-dump-orig, md5cp, prefetch-orig |
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GITHUB
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quay.io/biocontainers/parallel-meta-suite |
shpc-registry automated BioContainers addition for parallel-meta-suite |
ExtractRNA.o, PM-comp-corr, PM-comp-func, PM-comp-taxa, PM-extract-rna, PM-format-seq, PM-install, PM-parallel-meta, PM-pipeline, PM-plot-taxa, PM-predict-func, PM-predict-func-contribute, PM-predict-func-nsti, PM-rand-rare, PM-rare-curv, PM-select-func, PM-select-taxa, PM-split-seq, PM-update-taxa, placeholder, vsearch, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev |
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GITHUB
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quay.io/biocontainers/parallel-virfinder |
singularity registry hpc automated addition for parallel-virfinder |
dadaist2-mergeseqs, fu-16Sregion, fu-cov, fu-homocomp, fu-index, fu-msa, fu-multirelabel, fu-nanotags, fu-orf, fu-primers, fu-shred, fu-split, fu-sw, fu-tabcheck, fu-virfilter, parallel-virfinder.py, seqfu, cmark, pygmentize, futurize, pasteurize, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/paralyzer |
shpc-registry automated BioContainers addition for paralyzer |
PARalyzer, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/paraphase |
singularity registry hpc automated addition for paraphase |
paraphase, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/parasail-python |
shpc-registry automated BioContainers addition for parasail-python |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/parascopy |
shpc-registry automated BioContainers addition for parascopy |
_parascopy_freebayes, parascopy, tabix++, bc, dc, qualfa2fq.pl, xa2multi.pl, bwa, fasta-sanitize.pl, plot-ampliconstats, f2py3.9, ace2sam |
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GITHUB
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quay.io/biocontainers/paraview |
shpc-registry automated BioContainers addition for paraview |
bugpoint, c-index-test, cftp, ckeygen, clang, clang++, clang-check, clang-format, clang-tblgen, conch, llc, lli, llvm-ar, llvm-as, llvm-bcanalyzer, llvm-config, llvm-cov, llvm-diff, llvm-dis, llvm-dwarfdump, llvm-extract, llvm-link, llvm-mc, llvm-mcmarkup, llvm-nm, llvm-objdump, llvm-prof, llvm-ranlib, llvm-readobj, llvm-rtdyld, llvm-size, llvm-stress, llvm-symbolizer, llvm-tblgen, macho-dump, mailmail, opt, paraview-config, pvbatch, pvdataserver, pvpython, pvrenderserver, pvserver, pyhtmlizer, tkconch, trial, twist, twistd, easy_install-2.7, protoc, python2, python2.7, idle, python-config, smtpd.py, gif2h5, h52gif, h5c++ |
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GITHUB
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quay.io/biocontainers/pardre |
singularity registry hpc automated addition for pardre |
ParDRe, mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, mpifort, mpic++, mpicc, mpicxx, mpiexec, mpif77, mpif90, mpirun |
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GITHUB
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quay.io/biocontainers/parebrick |
singularity registry hpc automated addition for parebrick |
PaReBrick, PaReBrick-Charts, parebrick, parebrick-charts, nosetests-3.9, coverage, ete3, nosetests, xkbcli, py.test, pytest, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner, repc, fonttools, pyftmerge, pyftsubset |
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GITHUB
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quay.io/biocontainers/parent-map |
shpc-registry automated BioContainers addition for parent-map |
helpviewer, img2png, img2py, img2xpm, pycrust, pyshell, pyslices, pyslicesshell, pywxrc, wx-config, wxdemo, wxdocs, wxget, wxrc, wxrc-3.0, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, gtk-builder-convert, gtk-demo, gtk-query-immodules-2.0, gtk-update-icon-cache, gdk-pixbuf-thumbnailer |
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GITHUB
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quay.io/biocontainers/pargenes |
shpc-registry automated BioContainers addition for pargenes |
pargenes-hpc-debug.py, pargenes-hpc.py, pargenes.py, aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info, opal_wrapper, orte-clean, orte-info, orte-server |
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GITHUB
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quay.io/biocontainers/parmed |
shpc-registry automated BioContainers addition for parmed |
parmed, xparmed, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/parse-vcf |
singularity registry hpc automated addition for parse-vcf |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/parse_mito_blast |
singularity registry hpc automated addition for parse_mito_blast |
parse_mito_blast.py, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/parsimonious |
singularity registry hpc automated addition for parsimonious |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
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quay.io/biocontainers/parsnp |
shpc-registry automated BioContainers addition for parsnp |
Phi, Profile, extend.py, harvesttools, logger.py, parsnp, template.ini, fastANI, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, capnp, capnpc, capnpc-c++ |
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GITHUB
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quay.io/biocontainers/pasa |
shpc-registry automated BioContainers addition for pasa |
TransDecoder.LongOrfs, TransDecoder.Predict, ann_exons_ens.pl, ann_exons_ncbi.pl, ann_exons_up_sql.pl, ann_exons_up_www.pl, ann_feats2ipr.pl, ann_feats2ipr_e.pl, ann_feats_up_sql.pl, ann_feats_up_www2.pl, ann_ipr_www.pl, ann_pdb_cath.pl, ann_pdb_vast.pl, ann_pfam27.pl, ann_pfam28.pl, ann_pfam30.pl, ann_pfam30_tmptbl.pl, ann_pfam_www.pl, ann_upfeats_pfam_www_e.pl, annot_blast_btop2.pl, atoiindex, bulk-counts, cdbfasta, cdbyank, cdna_alignment_orf_to_genome_orf.pl, cmetindex, color_defs.pl, compute_base_probs.pl, cpuid, dbsnp_iit, ensembl_genes, exclude_similar_proteins.pl, exp_up_ensg.pl, expand_links.pl, expand_uniref50.pl, fa_coords, fasta, fasta36, fasta_prot_checker.pl, fastf36, fastm36, fasts36, fastx36, fasty36, ffindex_resume.pl, gene_list_to_gff.pl, get-genome, get_FL_accs.pl, get_longest_ORF_per_transcript.pl, get_top_longest_fasta_entries.pl, gff3_file_to_bed.pl, gff3_file_to_proteins.pl, gff3_gene_to_gtf_format.pl, gff3_genes, gff3_introns, gff3_splicesites, ggsearch36, glsearch36, gmap.nosimd, gmap.sse42, gmap_build, gmap_cat, gmap_process, gmapindex, gmapl, gmapl.nosimd, gmapl.sse42, gsnap, gsnap.nosimd, gsnap.sse42, gsnapl, gsnapl.nosimd, gsnapl.sse42, gss-server, gtf_genes, gtf_genome_to_cdna_fasta.pl, gtf_introns, gtf_splicesites, gtf_to_alignment_gff3.pl, gtf_to_bed.pl, gtf_transcript_splicesites, gvf_iit, iit_dump, iit_get, iit_store, indexdb_cat, kadmin.local, kadmind, kdb5_util, kprop, kpropd, kproplog, krb5-send-pr, krb5kdc, lalign36, lav2plt.pl, lavplt_ps.pl, lavplt_svg.pl, lighttpd, lighttpd-angel, links2sql.pl, m8_btop_msa.pl, m9B_btop_msa.pl, map_db, md_coords, nr_ORFs_gff3.pl, parse_m9.pl, pblat, pfam_runner.pl, pluginviewer, psl_genes, psl_introns, psl_splicesites, refine_gff3_group_iso_strip_utrs.pl, refine_hexamer_scores.pl, remove_eclipsed_ORFs.pl, res2R.pl, sam_sort, saslauthd, sc-counts, score_CDS_likelihood_all_6_frames.pl, select_best_ORFs_per_transcript.pl, seq_n_baseprobs_to_loglikelihood_vals.pl, shuffle_embed.pl, sim_server, slclust, snpindex, ssearch36, sserver, start_codon_refinement.pl, summ_domain_ident.pl, testsaslauthd, tfastf36, tfastm36, tfasts36, tfastx36, tfasty36, train_start_PWM.pl, trindex, uri_unescape.pl, uuserver, vcf_iit, velocity-counts, gmap, blat, db_convert, db_archive, db_checkpoint, db_deadlock, db_dump, db_hotbackup, db_load, db_log_verify |
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GITHUB
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quay.io/biocontainers/pash |
shpc-registry automated BioContainers addition for pash |
buildFastaIndex.rb, convertFastaQualToFastQ.rb, extractChromLengths.rb, getRCChrom.rb, keyFreq, makeIgnoreList, pash-3.0lx, pash2SAM, pash3.0.rb, pashToLff.rb, pprof, splitFastq.rb, jemalloc.sh, erb, gem, irb, rake, rdoc, ri, ruby, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/pass |
singularity registry hpc automated addition for pass |
PASS |
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GITHUB
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quay.io/biocontainers/pasta |
shpc-registry automated BioContainers addition for pasta |
fakealigner, faketree, fasttreeMP, hmmeralign, hmmerbuild, opal.jar, padaligner, randtree, raxml, raxmlp, run_pasta.py, run_pasta_gui.py, run_seqtools.py, prank, muscle, fasttree, sumlabels.py, sumtrees.py, clustalw2, mafft, hmmalign, hmmbuild, jaotc |
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GITHUB
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quay.io/biocontainers/paste-bio |
shpc-registry automated BioContainers addition for paste-bio |
scanpy, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, numba, pycc, natsort, mirror_server |
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GITHUB
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quay.io/biocontainers/pastml |
singularity registry hpc automated addition for pastml |
attr, balsam, esdcompat, geomap, getfattr, itol.py, itolexport.py, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, lprodump, lrelease-pro, lupdate-pro, meshdebug, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pastml, pasuspender, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, tracegen, transition_counter, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, xml2-config.bak, ete3, xkbcli, db_convert, cups-config, ippeveprinter, ipptool, db_archive, db_checkpoint, db_deadlock, db_dump, db_hotbackup, db_load |
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GITHUB
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quay.io/biocontainers/pastrami |
singularity registry hpc automated addition for pastrami |
pastrami.py, pathos_connect, plink2, portpicker, pox, ppserver, get_objgraph, undill, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, normalizer, python3.1 |
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GITHUB
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quay.io/biocontainers/pasty |
shpc-registry automated BioContainers addition for pasty |
executor, pasty, rich-click, cmark, coloredlogs, humanfriendly, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns |
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GITHUB
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quay.io/biocontainers/patchify |
singularity registry hpc automated addition for patchify |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/pathogen-embed |
singularity registry hpc automated addition for pathogen-embed |
pathogen-cluster, pathogen-distance, pathogen-embed, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, cygdb, cython, cythonize, numba, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tqdm, tjbench |
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GITHUB
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quay.io/biocontainers/pathogen-profiler |
shpc-registry automated BioContainers addition for pathogen-profiler |
add_dummy_AD.py, combine_vcf_variants.py, delly, lofreq, lofreq2_call_pparallel.py, lofreq2_indel_ovlp.py, lofreq2_somatic.py, lofreq2_vcfplot.py, rename_vcf_chrom.py, sam_add_rg.pl, update_version.sh, gatk, pilon, tabix++, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk |
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GITHUB
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quay.io/biocontainers/pathogentrack |
shpc-registry automated BioContainers addition for pathogentrack |
PathogenTrack, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/pathogist |
shpc-registry automated BioContainers addition for pathogist |
MentaLiST.jl, PATHOGIST, SpoTyping.py, SpoTyping_plot.r, abundance-dist-single.py, abundance-dist.py, annotate-partitions.py, build_db_functions.jl, calling_functions.jl, count-median.py, db_graph.jl, do-partition.py, extract-long-sequences.py, extract-paired-reads.py, extract-partitions.py, fastq-to-fasta.py, filter-abund-single.py, filter-abund.py, filter-stoptags.py, find-knots.py, interleave-reads.py, julia, kwip, kwip-stats, load-graph.py, load-into-counting.py, make-initial-stoptags.py, mentalist, merge-partitions.py, mlst_download_functions.jl, normalize-by-median.py, partition-graph.py, prince, pulpdoctest, readstats.py, sample-reads-randomly.py, snippy, snippy-core, snippy-vcf_filter, snippy-vcf_report, snippy-vcf_to_tab, split-paired-reads.py, trim-low-abund.py, unique-kmers.py, vcfnormalizesvs, vcfnull2ref, vcftools, vcfunphase, screed, plotBfst.R, plotHapLrt.R, plotHaplotypes.R, plotPfst.R, plotSmoothed.R, plotWCfst.R, plotXPEHH.R, plot_roc.r, snpEff |
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GITHUB
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quay.io/biocontainers/patholive |
shpc-registry automated BioContainers addition for patholive |
PathoLive.py, hilive, hilive-build, hilive-out, patholive, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, f2py3.6, certutil, nspr-config, nss-config, pk12util |
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GITHUB
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quay.io/biocontainers/pathoscope |
shpc-registry automated BioContainers addition for pathoscope |
pathoscope, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, bcftools |
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GITHUB
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quay.io/biocontainers/pathphynder |
singularity registry hpc automated addition for pathphynder |
pathPhynder, phynder, annot-tsv, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, glpsol, hb-info, fasta-sanitize.pl, plot-ampliconstats, tjbench, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl |
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GITHUB
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quay.io/biocontainers/pathracer |
shpc-registry automated BioContainers addition for pathracer |
pathracer |
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GITHUB
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quay.io/biocontainers/pathtools |
shpc-registry automated BioContainers addition for pathtools |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/pathwaymatcher |
shpc-registry automated BioContainers addition for pathwaymatcher |
pathwaymatcher, pathwaymatcher.py, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/pauda |
shpc-registry automated BioContainers addition for pauda |
pauda-build, pauda-run, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, extcheck |
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GITHUB
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quay.io/biocontainers/pauvre |
shpc-registry automated BioContainers addition for pauvre |
pauvre, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc, tificc |
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GITHUB
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quay.io/biocontainers/pavfinder |
singularity registry hpc automated addition for pavfinder |
abyss-db-csv, atoiindex, bash, bashbug, biobloomcategorizer, biobloommaker, biobloommicategorizer, biobloommimaker, bulk-counts, check_support.py, cmetindex, cpuid, dbsnp_iit, ensembl_genes, extract_transcript_sequence.py, faToNib, fa_coords, filter_fasta.py, find_sv_genome.py, find_sv_transcriptome.py, fusion-bloom, fusion-bloom.makefile, get-genome, gfClient, gfServer, gff3_genes, gff3_introns, gff3_splicesites, gmap.nosimd, gmap.sse42, gmap_build, gmap_cat, gmap_process, gmapindex, gmapl, gmapl.nosimd, gmapl.sse42, gsnap, gsnap.nosimd, gsnap.sse42, gsnapl, gsnapl.nosimd, gsnapl.sse42, gtf_genes, gtf_introns, gtf_splicesites, gtf_transcript_splicesites, gvf_iit, iit_dump, iit_get, iit_store, indexdb_cat, link_ssv.py, map_splice.py, md_coords, nibFrag, ntcard, nthll, pavfinder, pslPretty, pslReps, pslSort, psl_genes, psl_introns, psl_splicesites, rescue_fusion.py, rnabloom, sam_sort, sc-counts, skip_psl_self.awk, skip_psl_self_ss.awk, snpindex, strip_sam_qual.awk, strip_sam_seq_qual.awk, strip_sam_seq_qual_noself.awk, tap, tap2, transabyss, transabyss-merge, trindex, vcf_iit, velocity-counts, gmap, abyss-bloom-dbg, abyss-bloom-dist.mk.Makefile, abyss-db-txt, abyss-dida, abyss-paired-dbg, abyss-paired-dbg-mpi, abyss-pe.Makefile, abyss-sealer, ABYSS, ABYSS-P, AdjList, Consensus, DAssembler, DistanceEst, DistanceEst-ssq, KAligner, MergeContigs, MergePaths, Overlap, ParseAligns, PathConsensus, PathOverlap, PopBubbles, SimpleGraph |
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GITHUB
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quay.io/biocontainers/pb-assembly |
shpc-registry automated BioContainers addition for pb-assembly |
Catrack, DAM2fasta, DB2Falcon, DB2fasta, DBdump, DBdust, DBrm, DBshow, DBsplit, DBstats, FALCON_headerConverter.pl, HPC.REPmask, HPC.TANmask, HPC.daligner, LA4Falcon, LA4Ice, LAcat, LAcheck, LAdump, LAindex, LAmerge, LAshow, LAsort, LAsplit, REPmask, TANmask, blasr, daligner, daligner_p, datander, delta2vcf, dexta, falcon-phase, falcon-task, falconc, fasta2DAM, fasta2DB, fc_actg_coordinate, fc_calc_cutoff, fc_consensus, fc_consensus.exe, fc_contig_annotate, fc_ctg_link_analysis, fc_dedup_a_tigs, fc_dedup_h_tigs.py, fc_emit_haplotigs.py, fc_fasta2fasta, fc_fetch_reads, fc_gen_gfa_v1, fc_get_read_ctg_map, fc_get_read_hctg_map.py, fc_graph_to_contig, fc_graph_to_utgs, fc_ovlp_filter, fc_ovlp_filter_with_phase.py, fc_ovlp_stats, fc_ovlp_to_graph, fc_phase.py, fc_phased_ovlp_to_graph.py, fc_phasing_readmap.py, fc_pr_ctg_track, fc_primary_contig_index.pl, fc_quiver.py, fc_rr_ctg_track, fc_rr_hctg_track.exe, fc_rr_hctg_track.py, fc_rr_hctg_track2.exe, fc_rr_hctg_track2.py, fc_run, fc_run.py, fc_run1, fc_scrub_names.pl, fc_select_reads_from_bam.py, fc_unzip.py, fc_unzip_gen_gfa_v1.py, gcpp, heartbeat-wrapper, pbmm2, pwatcher-main, pwatcher-pypeflow-example, rangen, simulator, undexta, racon, rampler, racon_wrapper, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot, nucmer |
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GITHUB
|
quay.io/biocontainers/pb-dazzler |
shpc-registry automated BioContainers addition for pb-dazzler |
Catrack, DAM2fasta, DB2Falcon, DB2fasta, DBdump, DBdust, DBrm, DBshow, DBsplit, DBstats, HPC.REPmask, HPC.TANmask, HPC.daligner, LA4Falcon, LA4Ice, LAcat, LAcheck, LAdump, LAindex, LAmerge, LAshow, LAsort, LAsplit, REPmask, TANmask, daligner, daligner_p, datander, dexta, fasta2DAM, fasta2DB, rangen, simulator, undexta |
|
GITHUB
|
quay.io/biocontainers/pb-falcon-phase |
shpc-registry automated BioContainers addition for pb-falcon-phase |
FALCON_headerConverter.pl, falcon-phase, fc_primary_contig_index.pl, fc_scrub_names.pl, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/pb-falcon |
shpc-registry automated BioContainers addition for pb-falcon |
|
|
GITHUB
|
quay.io/biocontainers/pb-falconc |
shpc-registry automated BioContainers addition for pb-falconc |
falconc, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/pbaa |
shpc-registry automated BioContainers addition for pbaa |
pbaa |
|
GITHUB
|
quay.io/biocontainers/pbalign |
shpc-registry automated BioContainers addition for pbalign |
bam2sam, blasr, createChemistryHeader.py, extractUnmappedSubreads.py, loadChemistry.py, maskAlignedReads.py, pbalign, pbbamify, pbindex, pbindexdump, pbmerge, pbservice, sawriter, unit2, avro, cygdb, cython, cythonize, f2py2, f2py2.7, chardetect, python2-config, python2.7-config |
|
GITHUB
|
quay.io/biocontainers/pbbam |
shpc-registry automated BioContainers addition for pbbam |
ccs-kinetics-bystrandify, extracthifi, pbindex, pbindexdump, pbmerge, zmwfilter, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/pbccs |
shpc-registry automated BioContainers addition for pbccs |
ccs, ccs-alt |
|
GITHUB
|
quay.io/biocontainers/pbcommand |
shpc-registry automated BioContainers addition for pbcommand |
avro, f2py3.7, chardetect, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config |
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GITHUB
|
quay.io/biocontainers/pbcopper |
shpc-registry automated BioContainers addition for pbcopper |
|
|
GITHUB
|
quay.io/biocontainers/pbcore |
shpc-registry automated BioContainers addition for pbcore |
f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/pbcoretools |
shpc-registry automated BioContainers addition for pbcoretools |
bamsieve, dataset, pbtools-gather, pbvalidate, avro, f2py3.7, chardetect, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config |
|
GITHUB
|
quay.io/biocontainers/pbdagcon |
shpc-registry automated BioContainers addition for pbdagcon |
Catrack, DAM2fasta, DB2fasta, DB2quiva, DBdust, DBrm, DBshow, DBsplit, DBstats, HPCdaligner, HPCmapper, LAcat, LAcheck, LAmerge, LAshow, LAsort, LAsplit, daligner, dazcon, fasta2DAM, fasta2DB, pbdagcon, quiva2DB, simulator, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, h5clear |
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GITHUB
|
quay.io/biocontainers/pbfusion |
singularity registry hpc automated addition for pbfusion |
gffcache, pbfusion |
|
GITHUB
|
quay.io/biocontainers/pbgcpp |
shpc-registry automated BioContainers addition for pbgcpp |
gcpp |
|
GITHUB
|
quay.io/biocontainers/pbgzip |
shpc-registry automated BioContainers addition for pbgzip |
pbgzip |
|
GITHUB
|
quay.io/biocontainers/pbh5tools |
shpc-registry automated BioContainers addition for pbh5tools |
bash5tools.py, cmph5tools.py, unit2, cygdb, cython, cythonize, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7 |
|
GITHUB
|
quay.io/biocontainers/pbhoover |
shpc-registry automated BioContainers addition for pbhoover |
bash5tools.py, cmph5tools.py, dataset.py, pbhoover, vcf_filter.py, vcf_melt, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, python2-config, python2.7-config, python2, python2.7 |
|
GITHUB
|
quay.io/biocontainers/pbiotools |
shpc-registry automated BioContainers addition for pbiotools |
bam-to-wiggle, bed-to-bigBed, bed12-to-gtf, bedx-to-bedy, calculate-bed-overlap, convert-ccds-to-bed, count-aligned-reads, count-reads, create-aligned-read-count-bar-chart, create-init-ribo-track, create-mygene-report, dna-to-aa, download-srr-files, epylint, estimate-metagene-profile-bayes-factors, extract-bed-sequences, extract-cds-coordinates, extract-metagene-profiles, fasta-to-fastq, fastq-pe-dedupe, filter-bam-by-ids, fix-all-bed-files, get-all-utrs, get-read-length-distribution, gtf-to-bed12, isort, isort-identify-imports, join-long-chromosomes, merge-isoforms, nc3tonc4, nc4tonc3, ncinfo, parse-meme-names, pickle-stan, plot-read-length-distribution, pyensembl, pylint, pylint-config, pyreverse, remove-duplicate-bed-entries, remove-duplicate-sequences, remove-multimapping-reads, reorder-fasta, run-bowtie, run-signalp, run-tmhmm, select-periodic-offsets, split-bed12-blocks, split-long-chromosomes, subtract-bed, symilar, dask-scheduler, dask-ssh, dask-worker, get_objgraph, undill, bokeh, cygdb, cython, cythonize, zipcmp |
|
GITHUB
|
quay.io/biocontainers/pbipa |
shpc-registry automated BioContainers addition for pbipa |
falconc, ipa, ipa2-task, ipa2_graph_to_contig, ipa2_ovlp_to_graph, ipa_purge_dups, ipa_purge_dups_calcuts, ipa_purge_dups_get_seqs, ipa_purge_dups_ngscstat, ipa_purge_dups_pbcstat, ipa_purge_dups_split_fa, nighthawk, pancake, pblayout, plac_runner.py, yte, racon, rampler, racon_wrapper, pulptest, cbc, clp, snakemake, snakemake-bash-completion |
|
GITHUB
|
quay.io/biocontainers/pbjasmine |
singularity registry hpc automated addition for pbjasmine |
jasmine |
|
GITHUB
|
quay.io/biocontainers/pblaa |
shpc-registry automated BioContainers addition for pblaa |
laa, laagc |
|
GITHUB
|
quay.io/biocontainers/pblat |
shpc-registry automated BioContainers addition for pblat |
pblat |
|
GITHUB
|
quay.io/biocontainers/pbmarkdup |
shpc-registry automated BioContainers addition for pbmarkdup |
pbmarkdup |
|
GITHUB
|
quay.io/biocontainers/pbmm2 |
shpc-registry automated BioContainers addition for pbmm2 |
pbmm2 |
|
GITHUB
|
quay.io/biocontainers/pbpigeon |
singularity registry hpc automated addition for pbpigeon |
pigeon |
|
GITHUB
|
quay.io/biocontainers/pbptyper |
shpc-registry automated BioContainers addition for pbptyper |
executor, pbptyper, rich-click, fastANI, cmark, coloredlogs, humanfriendly, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table |
|
GITHUB
|
quay.io/biocontainers/pbsim |
shpc-registry automated BioContainers addition for pbsim |
|
|
GITHUB
|
quay.io/biocontainers/pbsim2 |
shpc-registry automated BioContainers addition for pbsim2 |
pbsim |
|
GITHUB
|
quay.io/biocontainers/pbsim3 |
singularity registry hpc automated addition for pbsim3 |
pbsim |
|
GITHUB
|
quay.io/biocontainers/pbskera |
singularity registry hpc automated addition for pbskera |
skera |
|
GITHUB
|
quay.io/biocontainers/pbstarphase |
singularity registry hpc automated addition for pbstarphase |
pbstarphase |
|
GITHUB
|
quay.io/biocontainers/pbsv |
shpc-registry automated BioContainers addition for pbsv |
pbsv |
|
GITHUB
|
quay.io/biocontainers/pbtk |
singularity registry hpc automated addition for pbtk |
ccs-kinetics-bystrandify, extracthifi, pbindex, pbindexdump, pbmerge, zmwfilter |
|
GITHUB
|
quay.io/biocontainers/pbwt |
shpc-registry automated BioContainers addition for pbwt |
pbwt, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/pcaone |
singularity registry hpc automated addition for pcaone |
PCAone, PCAone.avx2, PCAone.x64 |
|
GITHUB
|
quay.io/biocontainers/pcasuite |
singularity registry hpc automated addition for pcasuite |
bison, flex, flex++, genpcz, m4, pcaunzip, pcazip, pczdump, yacc, zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff, hdp, hrepack, jpeg2hdf, paltohdf |
|
GITHUB
|
quay.io/biocontainers/pcst-fast |
shpc-registry automated BioContainers addition for pcst-fast |
pybind11-config, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/pdbfixer |
shpc-registry automated BioContainers addition for pdbfixer |
pdbfixer, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10 |
|
GITHUB
|
quay.io/biocontainers/pdbx |
singularity registry hpc automated addition for pdbx |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config |
|
GITHUB
|
quay.io/biocontainers/pdfkit |
shpc-registry automated BioContainers addition for pdfkit |
wkhtmltoimage, wkhtmltopdf, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/pdivas |
singularity registry hpc automated addition for pdivas |
pdivas, cyvcf2, coloredlogs, humanfriendly, brotli, normalizer, f2py3.10, htsfile, bgzip, tabix, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/peakachu |
shpc-registry automated BioContainers addition for peakachu |
blockbuster.x, peakachu, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
|
GITHUB
|
quay.io/biocontainers/peakhood |
shpc-registry automated BioContainers addition for peakhood |
bed_generate_unique_ids.py, gtf_add_transcript_biotype_info.py, peakhood, twoBitToFa, twoBitInfo, markdown_py, my_print_defaults, mysql_config, perror, fasta-sanitize.pl, shiftBed, plot-ampliconstats, annotateBed |
|
GITHUB
|
quay.io/biocontainers/peakranger |
shpc-registry automated BioContainers addition for peakranger |
peakranger |
|
GITHUB
|
quay.io/biocontainers/peaks2utr |
singularity registry hpc automated addition for peaks2utr |
macs2, peaks2utr, peaks2utr-demo, gffutils-cli, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, hb-info, tjbench, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap |
|
GITHUB
|
quay.io/biocontainers/peaksql |
shpc-registry automated BioContainers addition for peaksql |
numba, pycc, faidx, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/peakzilla |
shpc-registry automated BioContainers addition for peakzilla |
peakzilla.py, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/pear |
shpc-registry automated BioContainers addition for pear |
pear, pearRM |
|
GITHUB
|
quay.io/biocontainers/pecat |
singularity registry hpc automated addition for pecat |
pecat.pl, rampler, racon, racon_wrapper, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, sdust, k8, paftools.js, minimap2, python3.1 |
|
GITHUB
|
quay.io/biocontainers/ped_parser |
shpc-registry automated BioContainers addition for ped_parser |
ped_parser, py.test, pytest, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7 |
|
GITHUB
|
quay.io/biocontainers/peddy |
shpc-registry automated BioContainers addition for peddy |
peddy, toolshed, cyvcf2, coloredlogs, humanfriendly, f2py3.9, opj_compress, opj_decompress, opj_dump, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/pedesigner |
singularity registry hpc automated addition for pedesigner |
cas-offinder, edonr256-hash, edonr512-hash, gost12-256-hash, gost12-512-hash, llvm-spirv-15, pedesigner, poclcc, ccmake, cmake, cpack, ctest, ed2k-link, has160-hash, magnet-link, rhash, sfv-hash, tiger-hash, tth-hash, whirlpool-hash, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo |
|
GITHUB
|
quay.io/biocontainers/peekseq |
singularity registry hpc automated addition for peekseq |
peekseq.pl |
|
GITHUB
|
quay.io/biocontainers/peer |
singularity registry hpc automated addition for peer |
peertool |
|
GITHUB
|
quay.io/biocontainers/peewee |
shpc-registry automated BioContainers addition for peewee |
pwiz.py, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/pegasusio |
shpc-registry automated BioContainers addition for pegasusio |
pegasusio, natsort, mirror_server, mirror_server_stop, f2py3.9, opj_compress, opj_decompress, opj_dump, h5clear, h5format_convert, h5watch |
|
GITHUB
|
quay.io/biocontainers/pegasuspy |
shpc-registry automated BioContainers addition for pegasuspy |
csv-import, demuxEM, loompy, orc-memory, orc-scan, pegasus, pegasusio, pybind11-config, timezone-dump, torchrun, wordcloud_cli, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja |
|
GITHUB
|
quay.io/biocontainers/peglit |
singularity registry hpc automated addition for peglit |
RNAmultifold, peglit, peglit.inspect, peglit.score, tjbench, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex, RNAsnoop, RNAfold, Kinfold, RNALfold, RNAaliduplex, RNAalifold, RNAcofold, RNAdistance, RNAduplex, RNAeval, RNAforester |
|
GITHUB
|
quay.io/biocontainers/pegs |
shpc-registry automated BioContainers addition for pegs |
mk_pegs_intervals, pegs, vba_extract.py, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc |
|
GITHUB
|
quay.io/biocontainers/peka |
shpc-registry automated BioContainers addition for peka |
peka, peka.py, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, shiftBed, annotateBed |
|
GITHUB
|
quay.io/biocontainers/pepgenome |
shpc-registry automated BioContainers addition for pepgenome |
pepgenome, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/pepquery |
shpc-registry automated BioContainers addition for pepquery |
pepquery, jpackage, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink |
|
GITHUB
|
quay.io/biocontainers/pepr |
shpc-registry automated BioContainers addition for pepr |
PePr, PePr-postprocess, PePr-preprocess, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/pepsirf |
singularity registry hpc automated addition for pepsirf |
pepsirf, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/peptide-shaker |
shpc-registry automated BioContainers addition for peptide-shaker |
peptide-shaker, easy_install-2.7, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj |
|
GITHUB
|
quay.io/biocontainers/peptides |
singularity registry hpc automated addition for peptides |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/perbase |
shpc-registry automated BioContainers addition for perbase |
perbase |
|
GITHUB
|
quay.io/biocontainers/percolator |
shpc-registry automated BioContainers addition for percolator |
|
|
GITHUB
|
quay.io/biocontainers/peregrine-2021 |
singularity registry hpc automated addition for peregrine-2021 |
pg_asm, pg_build_idx, pg_build_sdb, pg_dedup, pg_dp_graph, pg_getreads, pg_graph, pg_layout, pg_ovlp, pg_ovlp_ec, pg_resolve, parsort, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh, env_parallel.pdksh, env_parallel.sh, env_parallel.tcsh, env_parallel.zsh, niceload, parcat, parset, sem, sql, parallel, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-aceperl |
shpc-registry automated BioContainers addition for perl-aceperl |
ace.pl, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-acme-damn |
shpc-registry automated BioContainers addition for perl-acme-damn |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-algorithm-cluster |
shpc-registry automated BioContainers addition for perl-algorithm-cluster |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-algorithm-dependency |
shpc-registry automated BioContainers addition for perl-algorithm-dependency |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-algorithm-diff |
shpc-registry automated BioContainers addition for perl-algorithm-diff |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-algorithm-munkres |
shpc-registry automated BioContainers addition for perl-algorithm-munkres |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-aliased |
shpc-registry automated BioContainers addition for perl-aliased |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-alien-build |
singularity registry hpc automated addition for perl-alien-build |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-alien-libxml2 |
singularity registry hpc automated addition for perl-alien-libxml2 |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-apache-test |
shpc-registry automated BioContainers addition for perl-apache-test |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-app-cpanminus |
shpc-registry automated BioContainers addition for perl-app-cpanminus |
cpanm, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-appconfig |
shpc-registry automated BioContainers addition for perl-appconfig |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-archive-extract |
shpc-registry automated BioContainers addition for perl-archive-extract |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-archive-tar-wrapper |
shpc-registry automated BioContainers addition for perl-archive-tar-wrapper |
l4p-tmpl, dbilogstrip, dbiprof, dbiproxy, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-archive-tar |
shpc-registry automated BioContainers addition for perl-archive-tar |
|
|
GITHUB
|
quay.io/biocontainers/perl-archive-zip |
shpc-registry automated BioContainers addition for perl-archive-zip |
crc32, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-array-compare |
shpc-registry automated BioContainers addition for perl-array-compare |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-array-set |
shpc-registry automated BioContainers addition for perl-array-set |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-array-utils |
shpc-registry automated BioContainers addition for perl-array-utils |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-atlas-modules |
shpc-registry automated BioContainers addition for perl-atlas-modules |
crc32, dm_date, dm_zdump, validjson, pg_amcheck, pod_cover, pg_verifybackup, pg_checksums, findrule, tzselect, zdump, zic, oid2name, pg_receivewal |
|
GITHUB
|
quay.io/biocontainers/perl-attribute-handlers |
shpc-registry automated BioContainers addition for perl-attribute-handlers |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-authen-sasl-saslprep |
shpc-registry automated BioContainers addition for perl-authen-sasl-saslprep |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-autodie |
shpc-registry automated BioContainers addition for perl-autodie |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-autoloader |
shpc-registry automated BioContainers addition for perl-autoloader |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-b-debug |
shpc-registry automated BioContainers addition for perl-b-debug |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-b-hooks-endofscope |
shpc-registry automated BioContainers addition for perl-b-hooks-endofscope |
cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-b |
shpc-registry automated BioContainers addition for perl-b |
|
|
GITHUB
|
quay.io/biocontainers/perl-base |
shpc-registry automated BioContainers addition for perl-base |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-bignum |
shpc-registry automated BioContainers addition for perl-bignum |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-bio-asn1-entrezgene |
shpc-registry automated BioContainers addition for perl-bio-asn1-entrezgene |
bp_find-blast-matches.pl, ace.pl, ccconfig, SOAPsh.pl, map, mirrorMappings, mkCSGB2312, mkmapfile, stubmaker.pl, chartex |
|
GITHUB
|
quay.io/biocontainers/perl-bio-automatedannotation |
shpc-registry automated BioContainers addition for perl-bio-automatedannotation |
annotate_bacteria, gene_name_occurances, parse_genes_from_gffs, bp_pairwise_kaks.pl, bp_search2BSML.pl, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search |
|
GITHUB
|
quay.io/biocontainers/perl-bio-bigfile |
shpc-registry automated BioContainers addition for perl-bio-bigfile |
bigWigToWig.pl, ibd2sdi, index_bigwigset.pl, innochecksum, myisam_ftdump, myisamchk, myisamlog, myisampack, mysql, mysql.server, mysql_config_editor, mysql_secure_installation, mysql_ssl_rsa_setup, mysql_tzinfo_to_sql, mysql_upgrade, mysqladmin, mysqlbinlog, mysqlcheck, mysqld, mysqld_multi, mysqld_safe, mysqldump, mysqldumpslow, mysqlimport, mysqlpump, mysqlshow, mysqlslap, wigToBigWig.pl, zlib_decompress, bp_pairwise_kaks.pl, bp_search2BSML.pl, bp_aacomp.pl, bp_biofetch_genbank_proxy.pl, bp_bioflat_index.pl, bp_biogetseq.pl, bp_blast2tree.pl, bp_bulk_load_gff.pl, bp_chaos_plot.pl, bp_classify_hits_kingdom.pl |
|
GITHUB
|
quay.io/biocontainers/perl-bio-bpwrapper |
singularity registry hpc automated addition for perl-bio-bpwrapper |
DrawGram.jar, DrawTree.jar, TMscore, bioaln, bioseq, biotree, bstats, clique, comppair, consense, contml, contrast, conus_compare, conus_train, dca, dialign-tx, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, dollop, dolmove, dolpenny, drawgram, drawgram_gui, drawtree, drawtree_gui, fakealigner, faketree, famsa, fasttreeMP, fitch, gendist, hmmeralign, hmmerbuild, hyperopt-mongo-worker, kalign, kitsch, matplotlib, mix, move, mustang, neighbor, opal.jar, pModel, padaligner, pars, penny, phylip, probcons, probconsRNA, proml, promlk, protdist, protpars, randtree, raxml, raxmlp, rbs, rdbg, restdist, restml, retree, run_pasta.py, run_pasta_gui.py, run_seqtools.py, sap, scalar, scompare, seqboot, sfold, strain_ml, treedist, typeprof, TMalign, dunamai, racc, make_pscores.pl, poa, bundle, bundler, prank, gdbm_dump, gdbm_load, gdbmtool, clustalo, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, bl2seq, blastall, blastclust, blastpgp, copymat, erb |
|
GITHUB
|
quay.io/biocontainers/perl-bio-cigar |
shpc-registry automated BioContainers addition for perl-bio-cigar |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-bio-coordinate |
shpc-registry automated BioContainers addition for perl-bio-coordinate |
bp_find-blast-matches.pl, ace.pl, ccconfig, SOAPsh.pl, map, mirrorMappings, mkCSGB2312, mkmapfile, stubmaker.pl, chartex |
|
GITHUB
|
quay.io/biocontainers/perl-bio-das |
shpc-registry automated BioContainers addition for perl-bio-das |
bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc |
|
GITHUB
|
quay.io/biocontainers/perl-bio-db-embl |
shpc-registry automated BioContainers addition for perl-bio-db-embl |
bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc |
|
GITHUB
|
quay.io/biocontainers/perl-bio-db-hts |
shpc-registry automated BioContainers addition for perl-bio-db-hts |
bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc |
|
GITHUB
|
quay.io/biocontainers/perl-bio-db-refseq |
shpc-registry automated BioContainers addition for perl-bio-db-refseq |
bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc |
|
GITHUB
|
quay.io/biocontainers/perl-bio-db-swissprot |
shpc-registry automated BioContainers addition for perl-bio-db-swissprot |
bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc |
|
GITHUB
|
quay.io/biocontainers/perl-bio-easel |
shpc-registry automated BioContainers addition for perl-bio-easel |
esl-alidepair.pl, esl-ssplit.pl, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-bio-eutilities |
shpc-registry automated BioContainers addition for perl-bio-eutilities |
bp_einfo, bp_genbank_ref_extractor, bp_pairwise_kaks.pl, bp_search2BSML.pl, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search |
|
GITHUB
|
quay.io/biocontainers/perl-bio-featureio |
shpc-registry automated BioContainers addition for perl-bio-featureio |
bp_find-blast-matches.pl, ace.pl, ccconfig, SOAPsh.pl, map, mirrorMappings, mkCSGB2312, mkmapfile, stubmaker.pl, chartex |
|
GITHUB
|
quay.io/biocontainers/perl-bio-gff3 |
shpc-registry automated BioContainers addition for perl-bio-gff3 |
gff3_from_fasta, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-bio-kmer |
singularity registry hpc automated addition for perl-bio-kmer |
DrawGram.jar, DrawTree.jar, TMscore, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, bstats, cit2pmid, clique, combine-uid-lists, comppair, consense, contml, contrast, conus_compare, conus_train, dca, dialign-tx, difference-uid-lists, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, dollop, dolmove, dolpenny, download-pmc, drawgram, drawgram_gui, drawtree, drawtree_gui, ds2pme, fakealigner, faketree, famsa, fasttreeMP, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, fitch, gbf2fsa, gbf2ref, gendist, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, gm2ranges, gm2segs, hmmeralign, hmmerbuild, hyperopt-mongo-worker, ini2xml, jsonl2xml, just-first-key, kalign, kitsch, mix, move, mustang, neighbor, nhance.sh, opal.jar, pModel, padaligner, pars, penny, phylip, pma2apa, pma2pme, pmc2bioc, pmc2info, probcons, probconsRNA, proml, promlk, protdist, protpars, quote-grouped-elements, randtree, raxml, raxmlp, rbs, rdbg, ref2pmid, refseq-nm-cds, restdist, restml, retree, run_pasta.py, run_pasta_gui.py, run_seqtools.py, sap, scn2xml, scompare, seqboot, sfold, strain_ml, stream-local, test-pmc-index, toml2xml, treedist, typeprof, yaml2xml, TMalign, make_pscores.pl, racc, poa, prank, bundle, bundler, RNAmultifold, gdbm_dump, gdbm_load, gdbmtool, clustalo, bl2seq, blastall, blastclust, blastpgp, copymat, erb, fastacmd, formatdb, formatrpsdb, gem, impala, irb, makemat |
|
GITHUB
|
quay.io/biocontainers/perl-bio-mlst-check |
shpc-registry automated BioContainers addition for perl-bio-mlst-check |
download_fasta_database, download_mlst_databases, get_emm_sequence_type, get_sequence_type, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc |
|
GITHUB
|
quay.io/biocontainers/perl-bio-phylo-cipres |
shpc-registry automated BioContainers addition for perl-bio-phylo-cipres |
cipresrun, imgsize, xml_grep, xml_merge, xml_pp, xml_spellcheck, xml_split, tpage, ttree, webtidy, tidyp |
|
GITHUB
|
quay.io/biocontainers/perl-bio-phylo-forest-dbtree |
singularity registry hpc automated addition for perl-bio-phylo-forest-dbtree |
dbicadmin, megatree-loader, megatree-ncbi-loader, megatree-phylotree-loader, megatree-pruner, config_data, imgsize, xml_grep, xml_merge, xml_pp, xml_spellcheck, xml_split, tpage, ttree, webtidy, tidyp, bdf2gdfont.pl, dbilogstrip, dbiprof, dbiproxy, package-stash-conflicts, htmltree, lwp-download, lwp-dump, lwp-mirror, lwp-request, bdftogd, gd2copypal, gd2togif, gd2topng |
|
GITHUB
|
quay.io/biocontainers/perl-bio-phylo |
shpc-registry automated BioContainers addition for perl-bio-phylo |
|
|
GITHUB
|
quay.io/biocontainers/perl-bio-procedural |
shpc-registry automated BioContainers addition for perl-bio-procedural |
bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc |
|
GITHUB
|
quay.io/biocontainers/perl-bio-rna-barmap |
singularity registry hpc automated addition for perl-bio-rna-barmap |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-bio-rna-barriers |
singularity registry hpc automated addition for perl-bio-rna-barriers |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-bio-rna-rnaalisplit |
shpc-registry automated BioContainers addition for perl-bio-rna-rnaalisplit |
FUNCS.pm, MetamakeDemos.pl, PDBFUNCS.pm, R-scape, R-scape-sim, R-scape-sim-nobps, R-view, RNAalisplit.pl, RNAz, SelectSubFamilyFromStockholm.pl, Stockholm.pm, appcov, eval_alignment.pl, msafilter, pdb_parse.pl, r2r, r2r_msa_comply.pl, rnazAnnotate.pl, rnazBEDsort.pl, rnazBEDstats.pl, rnazBlast.pl, rnazCluster.pl, rnazFilter.pl, rnazIndex.pl, rnazMAF2BED.pl, rnazRandomizeAln.pl, rnazSelectSeqs.pl, rnazSort.pl, rnazWindow.pl, bp_pairwise_kaks.pl, bp_search2BSML.pl, gnuplot, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker |
|
GITHUB
|
quay.io/biocontainers/perl-bio-rna-treekin |
singularity registry hpc automated addition for perl-bio-rna-treekin |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-bio-samtools |
shpc-registry automated BioContainers addition for perl-bio-samtools |
bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc |
|
GITHUB
|
quay.io/biocontainers/perl-bio-searchio-hmmer |
singularity registry hpc automated addition for perl-bio-searchio-hmmer |
bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc, bp_genbank2gff3, bp_index, bp_local_taxonomydb_query, bp_make_mrna_protein, bp_mask_by_search, bp_mrtrans, bp_mutate, bp_nexus2nh, bp_nrdb, bp_oligo_count, bp_process_gadfly, bp_process_sgd, bp_revtrans-motif, bp_search2alnblocks, bp_search2gff |
|
GITHUB
|
quay.io/biocontainers/perl-bio-tools-phylo-paml |
shpc-registry automated BioContainers addition for perl-bio-tools-phylo-paml |
bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, baseml, basemlg, chi2, codeml, evolver, infinitesites, mcmctree |
|
GITHUB
|
quay.io/biocontainers/perl-bio-tools-run-alignment-clustalw |
shpc-registry automated BioContainers addition for perl-bio-tools-run-alignment-clustalw |
bp_find-blast-matches.pl, ace.pl, ccconfig, SOAPsh.pl, clustalw, map, mirrorMappings, mkCSGB2312, mkmapfile, stubmaker.pl |
|
GITHUB
|
quay.io/biocontainers/perl-bio-tools-run-alignment-tcoffee |
shpc-registry automated BioContainers addition for perl-bio-tools-run-alignment-tcoffee |
bp_find-blast-matches.pl, t_coffee, ace.pl, ccconfig, SOAPsh.pl, map, mirrorMappings, mkCSGB2312, mkmapfile, stubmaker.pl |
|
GITHUB
|
quay.io/biocontainers/perl-bio-tools-run-remoteblast |
shpc-registry automated BioContainers addition for perl-bio-tools-run-remoteblast |
bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc |
|
GITHUB
|
quay.io/biocontainers/perl-bio-trace-abif |
shpc-registry automated BioContainers addition for perl-bio-trace-abif |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-bio-viennangs |
shpc-registry automated BioContainers addition for perl-bio-viennangs |
Tutorial_pipeline03.pl, assembly_hub_constructor.pl, bam_split.pl, bam_to_bigwig.pl, bam_uniq.pl, bed2bedGraph.pl, bed2nt2aa.pl, bed62bed12.pl, fasta_multigrep.pl, fasta_regex.pl, fasta_subgrep.pl, fetchChromSizes, gff2bed.pl, kmer_analysis.pl, newUCSCdb.pl, normalize_multicov.pl, rnaseq_peakfinder.pl, sj_visualizer.pl, splice_site_summary.pl, track_hub_constructor.pl, trim_fastq.pl, pod_cover, bedGraphToBigWig, bedToBigBed, faToTwoBit, gifecho, gifinto, gdlib-config, bam2bedgraph, bp_find-blast-matches.pl, ace.pl |
|
GITHUB
|
quay.io/biocontainers/perl-bioperl-core |
shpc-registry automated BioContainers addition for perl-bioperl-core |
bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc |
|
GITHUB
|
quay.io/biocontainers/perl-bioperl-run |
shpc-registry automated BioContainers addition for perl-bioperl-run |
bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc |
|
GITHUB
|
quay.io/biocontainers/perl-bioperl |
shpc-registry automated BioContainers addition for perl-bioperl |
|
|
GITHUB
|
quay.io/biocontainers/perl-biosails |
shpc-registry automated BioContainers addition for perl-biosails |
perl-reversion, moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-biox-seq |
shpc-registry automated BioContainers addition for perl-biox-seq |
bgzip.pl, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-biox-workflow-command |
shpc-registry automated BioContainers addition for perl-biox-workflow-command |
biosails-biox-render.py, biox, biox-workflow.pl, mustache.pl, perl-reversion, findrule, l4p-tmpl, config_data, dbilogstrip, dbiprof, dbiproxy, moose-outdated, package-stash-conflicts, cpanm, json_xs |
|
GITHUB
|
quay.io/biocontainers/perl-biox-workflow-plugin-filedetails |
shpc-registry automated BioContainers addition for perl-biox-workflow-plugin-filedetails |
biox-workflow.pl, filedetails.pl, findrule, config_data, perl5.22.0, c2ph, pstruct, moose-outdated, package-stash-conflicts, cpanm, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-biox-workflow-plugin-fileexists |
shpc-registry automated BioContainers addition for perl-biox-workflow-plugin-fileexists |
biox-workflow.pl, findrule, config_data, perl5.22.0, c2ph, pstruct, moose-outdated, package-stash-conflicts, cpanm, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-biox-workflow |
shpc-registry automated BioContainers addition for perl-biox-workflow |
|
|
GITHUB
|
quay.io/biocontainers/perl-bit-vector |
shpc-registry automated BioContainers addition for perl-bit-vector |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-blib |
shpc-registry automated BioContainers addition for perl-blib |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-bloom-faster |
shpc-registry automated BioContainers addition for perl-bloom-faster |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-border-style |
shpc-registry automated BioContainers addition for perl-border-style |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-btlib |
shpc-registry automated BioContainers addition for perl-btlib |
fetch, indexer, netfetch, perl5.22.0, c2ph, pstruct, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-bundle-bioperl |
shpc-registry automated BioContainers addition for perl-bundle-bioperl |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-business-isbn-data |
shpc-registry automated BioContainers addition for perl-business-isbn-data |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-business-isbn |
shpc-registry automated BioContainers addition for perl-business-isbn |
|
|
GITHUB
|
quay.io/biocontainers/perl-cache-cache |
shpc-registry automated BioContainers addition for perl-cache-cache |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-cairo |
shpc-registry automated BioContainers addition for perl-cairo |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-capture-tiny |
shpc-registry automated BioContainers addition for perl-capture-tiny |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-carp-clan |
shpc-registry automated BioContainers addition for perl-carp-clan |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-carp |
shpc-registry automated BioContainers addition for perl-carp |
|
|
GITHUB
|
quay.io/biocontainers/perl-cg-pipeline |
shpc-registry automated BioContainers addition for perl-cg-pipeline |
bp_find-blast-matches.pl, ace.pl, ccconfig, SOAPsh.pl, map, mirrorMappings, mkCSGB2312, mkmapfile, stubmaker.pl, chartex |
|
GITHUB
|
quay.io/biocontainers/perl-cgi |
shpc-registry automated BioContainers addition for perl-cgi |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-class-accessor |
shpc-registry automated BioContainers addition for perl-class-accessor |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-class-data-inheritable |
shpc-registry automated BioContainers addition for perl-class-data-inheritable |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-class-inspector |
shpc-registry automated BioContainers addition for perl-class-inspector |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-class-load-xs |
shpc-registry automated BioContainers addition for perl-class-load-xs |
package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-class-load |
shpc-registry automated BioContainers addition for perl-class-load |
|
|
GITHUB
|
quay.io/biocontainers/perl-class-method-modifiers |
shpc-registry automated BioContainers addition for perl-class-method-modifiers |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-class-methodmaker |
shpc-registry automated BioContainers addition for perl-class-methodmaker |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-class-singleton |
shpc-registry automated BioContainers addition for perl-class-singleton |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-class-std-fast |
shpc-registry automated BioContainers addition for perl-class-std-fast |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-class-std |
shpc-registry automated BioContainers addition for perl-class-std |
|
|
GITHUB
|
quay.io/biocontainers/perl-class-trigger |
singularity registry hpc automated addition for perl-class-trigger |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-class-xsaccessor |
shpc-registry automated BioContainers addition for perl-class-xsaccessor |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-clone-choose |
shpc-registry automated BioContainers addition for perl-clone-choose |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-clone-pp |
shpc-registry automated BioContainers addition for perl-clone-pp |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-clone |
shpc-registry automated BioContainers addition for perl-clone |
|
|
GITHUB
|
quay.io/biocontainers/perl-color-theme |
shpc-registry automated BioContainers addition for perl-color-theme |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-common-sense |
shpc-registry automated BioContainers addition for perl-common-sense |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-compress-bgzf |
shpc-registry automated BioContainers addition for perl-compress-bgzf |
bgzip.pl, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-compress-raw-bzip2 |
shpc-registry automated BioContainers addition for perl-compress-raw-bzip2 |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-compress-raw-zlib |
shpc-registry automated BioContainers addition for perl-compress-raw-zlib |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-config-any |
shpc-registry automated BioContainers addition for perl-config-any |
cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-config-autoconf |
shpc-registry automated BioContainers addition for perl-config-autoconf |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-config-general |
shpc-registry automated BioContainers addition for perl-config-general |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-config-simple |
shpc-registry automated BioContainers addition for perl-config-simple |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-config-tiny |
shpc-registry automated BioContainers addition for perl-config-tiny |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-const-fast |
shpc-registry automated BioContainers addition for perl-const-fast |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-constant |
shpc-registry automated BioContainers addition for perl-constant |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-convert-binary-c |
shpc-registry automated BioContainers addition for perl-convert-binary-c |
ccconfig, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-convert-binhex |
shpc-registry automated BioContainers addition for perl-convert-binhex |
binhex.pl, debinhex.pl, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-cpan-meta-check |
shpc-registry automated BioContainers addition for perl-cpan-meta-check |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-cpan-meta-requirements |
shpc-registry automated BioContainers addition for perl-cpan-meta-requirements |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-cpan-meta-validator |
shpc-registry automated BioContainers addition for perl-cpan-meta-validator |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-cpan-meta-yaml |
shpc-registry automated BioContainers addition for perl-cpan-meta-yaml |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-cpan-meta |
shpc-registry automated BioContainers addition for perl-cpan-meta |
|
|
GITHUB
|
quay.io/biocontainers/perl-cpan-shell |
shpc-registry automated BioContainers addition for perl-cpan-shell |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-crypt-openssl-guess |
shpc-registry automated BioContainers addition for perl-crypt-openssl-guess |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-crypt-openssl-random |
shpc-registry automated BioContainers addition for perl-crypt-openssl-random |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-crypt-openssl-rsa |
shpc-registry automated BioContainers addition for perl-crypt-openssl-rsa |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-crypt-rc4 |
shpc-registry automated BioContainers addition for perl-crypt-rc4 |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-data-compare |
shpc-registry automated BioContainers addition for perl-data-compare |
findrule, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-data-dump |
shpc-registry automated BioContainers addition for perl-data-dump |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-data-dumper |
shpc-registry automated BioContainers addition for perl-data-dumper |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-data-lock |
shpc-registry automated BioContainers addition for perl-data-lock |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-data-match |
shpc-registry automated BioContainers addition for perl-data-match |
findrule, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-data-munge |
shpc-registry automated BioContainers addition for perl-data-munge |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-data-optlist |
shpc-registry automated BioContainers addition for perl-data-optlist |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-data-predicate |
shpc-registry automated BioContainers addition for perl-data-predicate |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-data-stag |
shpc-registry automated BioContainers addition for perl-data-stag |
stag-autoschema.pl, stag-db.pl, stag-diff.pl, stag-drawtree.pl, stag-filter.pl, stag-findsubtree.pl, stag-flatten.pl, stag-grep.pl, stag-handle.pl, stag-itext2simple.pl |
|
GITHUB
|
quay.io/biocontainers/perl-data-utilities |
shpc-registry automated BioContainers addition for perl-data-utilities |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-data-uuid |
shpc-registry automated BioContainers addition for perl-data-uuid |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-data-visitor |
shpc-registry automated BioContainers addition for perl-data-visitor |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-data-walk |
shpc-registry automated BioContainers addition for perl-data-walk |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-date-format |
shpc-registry automated BioContainers addition for perl-date-format |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-date-manip |
shpc-registry automated BioContainers addition for perl-date-manip |
dm_date, dm_zdump, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-datetime-format-strptime |
shpc-registry automated BioContainers addition for perl-datetime-format-strptime |
package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-datetime-locale |
shpc-registry automated BioContainers addition for perl-datetime-locale |
package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-datetime-timezone |
shpc-registry automated BioContainers addition for perl-datetime-timezone |
package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-datetime |
shpc-registry automated BioContainers addition for perl-datetime |
|
|
GITHUB
|
quay.io/biocontainers/perl-db-file |
shpc-registry automated BioContainers addition for perl-db-file |
db_convert, db_archive, db_checkpoint, db_deadlock, db_dump, db_hotbackup, db_load, db_log_verify, db_printlog, db_recover |
|
GITHUB
|
quay.io/biocontainers/perl-dbd-mysql |
shpc-registry automated BioContainers addition for perl-dbd-mysql |
use-devel-checklib, my_print_defaults, mysql_config, perror, dbilogstrip, dbiprof, dbiproxy, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-dbd-pg |
shpc-registry automated BioContainers addition for perl-dbd-pg |
pg_verify_checksums, pg_standby, tzselect, zdump, zic, oid2name, pg_receivewal, pg_resetwal, pg_waldump, vacuumlo, clusterdb |
|
GITHUB
|
quay.io/biocontainers/perl-dbd-sqlite |
shpc-registry automated BioContainers addition for perl-dbd-sqlite |
dbilogstrip, dbiprof, dbiproxy, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-dbi |
shpc-registry automated BioContainers addition for perl-dbi |
dbilogstrip, dbiprof, dbiproxy, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-dbm-deep |
shpc-registry automated BioContainers addition for perl-dbm-deep |
dbilogstrip, dbiprof, dbiproxy, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-devel-assert |
shpc-registry automated BioContainers addition for perl-devel-assert |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-devel-checkbin |
shpc-registry automated BioContainers addition for perl-devel-checkbin |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-devel-checklib |
singularity registry hpc automated addition for perl-devel-checklib |
use-devel-checklib, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-devel-checkos |
shpc-registry automated BioContainers addition for perl-devel-checkos |
use-devel-assertos, findrule, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-devel-cover |
shpc-registry automated BioContainers addition for perl-devel-cover |
cover, cpancover, gcov2perl, pod_cover, imgsize, tpage, ttree, moose-outdated, package-stash-conflicts, cpanm, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-devel-cycle |
shpc-registry automated BioContainers addition for perl-devel-cycle |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-devel-globaldestruction |
shpc-registry automated BioContainers addition for perl-devel-globaldestruction |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-devel-overloadinfo |
shpc-registry automated BioContainers addition for perl-devel-overloadinfo |
package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-devel-size |
shpc-registry automated BioContainers addition for perl-devel-size |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-devel-stacktrace |
shpc-registry automated BioContainers addition for perl-devel-stacktrace |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-devel-symdump |
shpc-registry automated BioContainers addition for perl-devel-symdump |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-digest-crc |
shpc-registry automated BioContainers addition for perl-digest-crc |
|
|
GITHUB
|
quay.io/biocontainers/perl-digest-crc32 |
shpc-registry automated BioContainers addition for perl-digest-crc32 |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-digest-hmac |
shpc-registry automated BioContainers addition for perl-digest-hmac |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-digest-md5-file |
shpc-registry automated BioContainers addition for perl-digest-md5-file |
lwp-download, lwp-dump, lwp-mirror, lwp-request, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-digest-md5 |
shpc-registry automated BioContainers addition for perl-digest-md5 |
|
|
GITHUB
|
quay.io/biocontainers/perl-digest-perl-md5 |
shpc-registry automated BioContainers addition for perl-digest-perl-md5 |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-digest-sha |
shpc-registry automated BioContainers addition for perl-digest-sha |
|
|
GITHUB
|
quay.io/biocontainers/perl-digest-sha1 |
shpc-registry automated BioContainers addition for perl-digest-sha1 |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-dist-checkconflicts |
shpc-registry automated BioContainers addition for perl-dist-checkconflicts |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-dumbbench |
shpc-registry automated BioContainers addition for perl-dumbbench |
dumbbench, use-devel-assertos, findrule, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-dynaloader |
shpc-registry automated BioContainers addition for perl-dynaloader |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-email-date-format |
shpc-registry automated BioContainers addition for perl-email-date-format |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-email-simple |
shpc-registry automated BioContainers addition for perl-email-simple |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-encode-locale |
shpc-registry automated BioContainers addition for perl-encode-locale |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-encode |
shpc-registry automated BioContainers addition for perl-encode |
|
|
GITHUB
|
quay.io/biocontainers/perl-env-path |
shpc-registry automated BioContainers addition for perl-env-path |
envpath, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-env |
shpc-registry automated BioContainers addition for perl-env |
|
|
GITHUB
|
quay.io/biocontainers/perl-error |
shpc-registry automated BioContainers addition for perl-error |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-escape-houdini |
shpc-registry automated BioContainers addition for perl-escape-houdini |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-estscan1 |
shpc-registry automated BioContainers addition for perl-estscan1 |
ESTScan1, fetch, indexer, netfetch, perl5.22.0, c2ph, pstruct, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-estscan2 |
shpc-registry automated BioContainers addition for perl-estscan2 |
ESTScan, fetch, indexer, netfetch, perl5.22.0, c2ph, pstruct, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-eval-closure |
shpc-registry automated BioContainers addition for perl-eval-closure |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-excel-writer-xlsx |
shpc-registry automated BioContainers addition for perl-excel-writer-xlsx |
crc32, extract_vba, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-exception-class |
shpc-registry automated BioContainers addition for perl-exception-class |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-experimental |
shpc-registry automated BioContainers addition for perl-experimental |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-exporter-tidy |
shpc-registry automated BioContainers addition for perl-exporter-tidy |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-exporter-tiny |
shpc-registry automated BioContainers addition for perl-exporter-tiny |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-exporter |
shpc-registry automated BioContainers addition for perl-exporter |
|
|
GITHUB
|
quay.io/biocontainers/perl-extutils-cbuilder |
shpc-registry automated BioContainers addition for perl-extutils-cbuilder |
cpanm, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-extutils-config |
shpc-registry automated BioContainers addition for perl-extutils-config |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-extutils-constant |
shpc-registry automated BioContainers addition for perl-extutils-constant |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-extutils-cppguess |
shpc-registry automated BioContainers addition for perl-extutils-cppguess |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-extutils-depends |
shpc-registry automated BioContainers addition for perl-extutils-depends |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-extutils-helpers |
shpc-registry automated BioContainers addition for perl-extutils-helpers |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-extutils-installpaths |
shpc-registry automated BioContainers addition for perl-extutils-installpaths |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-extutils-makemaker |
shpc-registry automated BioContainers addition for perl-extutils-makemaker |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-extutils-manifest |
shpc-registry automated BioContainers addition for perl-extutils-manifest |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-extutils-parsexs |
shpc-registry automated BioContainers addition for perl-extutils-parsexs |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-extutils-pkgconfig |
shpc-registry automated BioContainers addition for perl-extutils-pkgconfig |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-fast |
shpc-registry automated BioContainers addition for perl-fast |
alncut, alnpi, fascodon, fascomp, fasconvert, fascut, fasfilter, fasgrep, fashead, faslen, faspaste, fasrc, fassort, fassub, fastail, fastax, fastaxsort, fastr, fasuniq, faswc, fasxl, gbfalncut, gbfcut, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-fastx-abi |
shpc-registry automated BioContainers addition for perl-fastx-abi |
abi2fq, mergeabi, stripabitags, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-fastx-reader |
shpc-registry automated BioContainers addition for perl-fastx-reader |
fqc, fqlen.pl, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-ffi-checklib |
singularity registry hpc automated addition for perl-ffi-checklib |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-file-chdir |
shpc-registry automated BioContainers addition for perl-file-chdir |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-file-compare |
shpc-registry automated BioContainers addition for perl-file-compare |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-file-copy-link |
shpc-registry automated BioContainers addition for perl-file-copy-link |
copylink, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-file-copy-recursive-reduced |
shpc-registry automated BioContainers addition for perl-file-copy-recursive-reduced |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-file-copy-recursive |
shpc-registry automated BioContainers addition for perl-file-copy-recursive |
|
|
GITHUB
|
quay.io/biocontainers/perl-file-details |
shpc-registry automated BioContainers addition for perl-file-details |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-file-fetch |
shpc-registry automated BioContainers addition for perl-file-fetch |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-file-find-rule |
shpc-registry automated BioContainers addition for perl-file-find-rule |
findrule, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-file-find |
shpc-registry automated BioContainers addition for perl-file-find |
|
|
GITHUB
|
quay.io/biocontainers/perl-file-grep |
shpc-registry automated BioContainers addition for perl-file-grep |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-file-homedir |
shpc-registry automated BioContainers addition for perl-file-homedir |
cpanm, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-file-listing |
shpc-registry automated BioContainers addition for perl-file-listing |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-file-next |
shpc-registry automated BioContainers addition for perl-file-next |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-file-path |
shpc-registry automated BioContainers addition for perl-file-path |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-file-pushd |
shpc-registry automated BioContainers addition for perl-file-pushd |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-file-readbackwards |
shpc-registry automated BioContainers addition for perl-file-readbackwards |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-file-remove |
shpc-registry automated BioContainers addition for perl-file-remove |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-file-share |
shpc-registry automated BioContainers addition for perl-file-share |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-file-sharedir-install |
shpc-registry automated BioContainers addition for perl-file-sharedir-install |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-file-sharedir |
shpc-registry automated BioContainers addition for perl-file-sharedir |
|
|
GITHUB
|
quay.io/biocontainers/perl-file-slurp-tiny |
shpc-registry automated BioContainers addition for perl-file-slurp-tiny |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-file-slurp |
shpc-registry automated BioContainers addition for perl-file-slurp |
|
|
GITHUB
|
quay.io/biocontainers/perl-file-slurper |
shpc-registry automated BioContainers addition for perl-file-slurper |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-file-sort |
shpc-registry automated BioContainers addition for perl-file-sort |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-file-spec |
shpc-registry automated BioContainers addition for perl-file-spec |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-file-tee |
shpc-registry automated BioContainers addition for perl-file-tee |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-file-temp |
shpc-registry automated BioContainers addition for perl-file-temp |
perl5.22.0, c2ph, pstruct, cpanm, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-file-touch |
shpc-registry automated BioContainers addition for perl-file-touch |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-file-util |
shpc-registry automated BioContainers addition for perl-file-util |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-file-which |
shpc-registry automated BioContainers addition for perl-file-which |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-filedirutil |
shpc-registry automated BioContainers addition for perl-filedirutil |
moose-outdated, package-stash-conflicts, cpanm, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-filesys-df |
shpc-registry automated BioContainers addition for perl-filesys-df |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-filter-simple |
shpc-registry automated BioContainers addition for perl-filter-simple |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-findbin-libs |
shpc-registry automated BioContainers addition for perl-findbin-libs |
perl-reversion, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-findbin-real |
shpc-registry automated BioContainers addition for perl-findbin-real |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-findbin |
shpc-registry automated BioContainers addition for perl-findbin |
|
|
GITHUB
|
quay.io/biocontainers/perl-font-afm |
shpc-registry automated BioContainers addition for perl-font-afm |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-font-ttf |
shpc-registry automated BioContainers addition for perl-font-ttf |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-forks |
shpc-registry automated BioContainers addition for perl-forks |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-gd-svg |
shpc-registry automated BioContainers addition for perl-gd-svg |
bdf2gdfont.pl, bdftogd, gd2copypal, gd2togif, gd2topng, gdcmpgif, gdparttopng, gdtopng, giftogd2, pngtogd |
|
GITHUB
|
quay.io/biocontainers/perl-gd |
shpc-registry automated BioContainers addition for perl-gd |
|
|
GITHUB
|
quay.io/biocontainers/perl-gdgraph-histogram |
shpc-registry automated BioContainers addition for perl-gdgraph-histogram |
bdf2gdfont.pl, bdftogd, gd2copypal, gd2togif, gd2topng, gdcmpgif, gdparttopng, gdtopng, giftogd2, pngtogd |
|
GITHUB
|
quay.io/biocontainers/perl-gdgraph |
shpc-registry automated BioContainers addition for perl-gdgraph |
|
|
GITHUB
|
quay.io/biocontainers/perl-gdtextutil |
shpc-registry automated BioContainers addition for perl-gdtextutil |
bdf2gdfont.pl, bdftogd, gd2copypal, gd2togif, gd2topng, gdcmpgif, gdparttopng, gdtopng, giftogd2, pngtogd |
|
GITHUB
|
quay.io/biocontainers/perl-getopt-argvfile |
shpc-registry automated BioContainers addition for perl-getopt-argvfile |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-getopt-long-descriptive |
shpc-registry automated BioContainers addition for perl-getopt-long-descriptive |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-getopt-long |
shpc-registry automated BioContainers addition for perl-getopt-long |
|
|
GITHUB
|
quay.io/biocontainers/perl-gfacs |
shpc-registry automated BioContainers addition for perl-gfacs |
gFACs.pl, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml, basemlg, chi2, codeml, evolver, infinitesites |
|
GITHUB
|
quay.io/biocontainers/perl-git-wrapper-plus |
shpc-registry automated BioContainers addition for perl-git-wrapper-plus |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-git-wrapper |
shpc-registry automated BioContainers addition for perl-git-wrapper |
|
|
GITHUB
|
quay.io/biocontainers/perl-go-perl |
shpc-registry automated BioContainers addition for perl-go-perl |
go-apply-xslt, go-dag-summary.pl, go-export-graph.pl, go-export-prolog.pl, go-filter-subset.pl, go-show-assocs-by-node.pl, go-show-paths-to-root.pl, go2chadoxml, go2error_report, go2fmt.pl, go2godb_prestore, go2obo, go2obo_html, go2obo_text, go2obo_xml, go2owl, go2pathlist, go2prolog, go2rdf, go2rdfxml, go2summary, go2sxpr, go2tbl, go2text_html, go2xml, map2slim, stag-autoschema.pl, stag-db.pl, stag-diff.pl, stag-drawtree.pl, stag-filter.pl, stag-findsubtree.pl, stag-flatten.pl, stag-grep.pl, stag-handle.pl, stag-itext2simple.pl |
|
GITHUB
|
quay.io/biocontainers/perl-graph-readwrite |
shpc-registry automated BioContainers addition for perl-graph-readwrite |
yapp, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-graph |
shpc-registry automated BioContainers addition for perl-graph |
|
|
GITHUB
|
quay.io/biocontainers/perl-graphics-colornames |
shpc-registry automated BioContainers addition for perl-graphics-colornames |
config_data, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-graphics-colorobject |
shpc-registry automated BioContainers addition for perl-graphics-colorobject |
config_data, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-graphviz |
shpc-registry automated BioContainers addition for perl-graphviz |
xpath, xml_grep, xml_merge, xml_pp, xml_spellcheck, xml_split, webtidy, tidyp, diffimg, delaunay |
|
GITHUB
|
quay.io/biocontainers/perl-grass |
shpc-registry automated BioContainers addition for perl-grass |
bdf2gdfont.PLS, brass_bedpe2vcf.pl, cgpAppendIdsToVcf.pl, cgpVCFSplit.pl, cover, cpancover, cvtbdf.pl, dotty, gcov2perl, grass.pl, lneato, pod_cover, bp_pairwise_kaks.pl, bp_search2BSML.pl, gdlib-config, bam2bedgraph, perl5.22.0, ace.pl, ccconfig, SOAPsh.pl, map |
|
GITHUB
|
quay.io/biocontainers/perl-gtdbtk |
shpc-registry automated BioContainers addition for perl-gtdbtk |
pfam_search.pl, gifecho, gifinto, gdlib-config, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml, basemlg, chi2 |
|
GITHUB
|
quay.io/biocontainers/perl-hash-merge |
shpc-registry automated BioContainers addition for perl-hash-merge |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-hash-util-fieldhash-compat |
shpc-registry automated BioContainers addition for perl-hash-util-fieldhash-compat |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-heap-simple-perl |
shpc-registry automated BioContainers addition for perl-heap-simple-perl |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-heap-simple-xs |
shpc-registry automated BioContainers addition for perl-heap-simple-xs |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-heap-simple |
shpc-registry automated BioContainers addition for perl-heap-simple |
|
|
GITHUB
|
quay.io/biocontainers/perl-heap |
shpc-registry automated BioContainers addition for perl-heap |
|
|
GITHUB
|
quay.io/biocontainers/perl-hook-lexwrap |
shpc-registry automated BioContainers addition for perl-hook-lexwrap |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-hpc-runner-command-plugin-logger-sqlite |
shpc-registry automated BioContainers addition for perl-hpc-runner-command-plugin-logger-sqlite |
ansitable-list-border-styles, ansitable-list-color-themes, ansitable-list-style-sets, dbicadmin, hpcrunner.pl, perl-reversion, findrule, l4p-tmpl, imgsize, tpage, ttree, dbilogstrip, dbiprof, dbiproxy, moose-outdated, package-stash-conflicts |
|
GITHUB
|
quay.io/biocontainers/perl-hpc-runner-command |
shpc-registry automated BioContainers addition for perl-hpc-runner-command |
|
|
GITHUB
|
quay.io/biocontainers/perl-hpc-runner-mce |
shpc-registry automated BioContainers addition for perl-hpc-runner-mce |
mcerunner.pl, findrule, l4p-tmpl, perl5.22.0, c2ph, pstruct, moose-outdated, package-stash-conflicts, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-hpc-runner-pbs |
shpc-registry automated BioContainers addition for perl-hpc-runner-pbs |
cpus.in, cpus.pl, pbsrunner.pl, slurmrunner.pl, slurmrunnerbasic.pl, slurmrunnerrsyslog.pl, testnodes.pl, findrule, l4p-tmpl, perl5.22.0, c2ph, pstruct, tpage, ttree, moose-outdated, package-stash-conflicts, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-hpc-runner-scheduler |
shpc-registry automated BioContainers addition for perl-hpc-runner-scheduler |
l4p-tmpl, config_data, perl5.22.0, c2ph, pstruct, imgsize, tpage, ttree, dbilogstrip, dbiprof |
|
GITHUB
|
quay.io/biocontainers/perl-hpc-runner-slurm |
shpc-registry automated BioContainers addition for perl-hpc-runner-slurm |
cpus.in, cpus.pl, mcerunner.pl, slurmrunner.pl, slurmrunnerbasic.pl, slurmrunnerrsyslog.pl, testnodes.pl, findrule, l4p-tmpl, config_data, perl5.22.0, c2ph, pstruct, imgsize, tpage, ttree, dbilogstrip |
|
GITHUB
|
quay.io/biocontainers/perl-hpc-runner |
shpc-registry automated BioContainers addition for perl-hpc-runner |
|
|
GITHUB
|
quay.io/biocontainers/perl-html-element-extended |
shpc-registry automated BioContainers addition for perl-html-element-extended |
htmltree, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-html-entities-numbered |
shpc-registry automated BioContainers addition for perl-html-entities-numbered |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-html-form |
shpc-registry automated BioContainers addition for perl-html-form |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-html-formatter |
shpc-registry automated BioContainers addition for perl-html-formatter |
htmltree, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-html-parser |
shpc-registry automated BioContainers addition for perl-html-parser |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-html-tableextract |
shpc-registry automated BioContainers addition for perl-html-tableextract |
htmltree, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-html-tagset |
shpc-registry automated BioContainers addition for perl-html-tagset |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-html-template |
shpc-registry automated BioContainers addition for perl-html-template |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-html-tidy |
shpc-registry automated BioContainers addition for perl-html-tidy |
webtidy, tidyp, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-html-tree |
shpc-registry automated BioContainers addition for perl-html-tree |
htmltree, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-html-treebuilder-xpath |
shpc-registry automated BioContainers addition for perl-html-treebuilder-xpath |
htmltree, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-http-cookies |
shpc-registry automated BioContainers addition for perl-http-cookies |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-http-daemon |
shpc-registry automated BioContainers addition for perl-http-daemon |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-http-date |
shpc-registry automated BioContainers addition for perl-http-date |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-http-message |
shpc-registry automated BioContainers addition for perl-http-message |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-http-negotiate |
shpc-registry automated BioContainers addition for perl-http-negotiate |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-http-server-simple |
shpc-registry automated BioContainers addition for perl-http-server-simple |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-http-tiny |
shpc-registry automated BioContainers addition for perl-http-tiny |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-if |
shpc-registry automated BioContainers addition for perl-if |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-image-exiftool |
shpc-registry automated BioContainers addition for perl-image-exiftool |
exiftool, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-image-info |
shpc-registry automated BioContainers addition for perl-image-info |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-image-size |
shpc-registry automated BioContainers addition for perl-image-size |
imgsize, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-import-into |
shpc-registry automated BioContainers addition for perl-import-into |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-importer |
shpc-registry automated BioContainers addition for perl-importer |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-indirect |
shpc-registry automated BioContainers addition for perl-indirect |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-inline-c |
shpc-registry automated BioContainers addition for perl-inline-c |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-inline |
shpc-registry automated BioContainers addition for perl-inline |
|
|
GITHUB
|
quay.io/biocontainers/perl-integer |
shpc-registry automated BioContainers addition for perl-integer |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-io-all |
shpc-registry automated BioContainers addition for perl-io-all |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-io-compress-deflate |
shpc-registry automated BioContainers addition for perl-io-compress-deflate |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-io-compress |
shpc-registry automated BioContainers addition for perl-io-compress |
|
|
GITHUB
|
quay.io/biocontainers/perl-io-gzip |
shpc-registry automated BioContainers addition for perl-io-gzip |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-io-handle |
shpc-registry automated BioContainers addition for perl-io-handle |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-io-html |
shpc-registry automated BioContainers addition for perl-io-html |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-io-interactive |
shpc-registry automated BioContainers addition for perl-io-interactive |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-io-null |
shpc-registry automated BioContainers addition for perl-io-null |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-io-pager |
shpc-registry automated BioContainers addition for perl-io-pager |
tp, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-io-prompt |
shpc-registry automated BioContainers addition for perl-io-prompt |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-io-scalar |
shpc-registry automated BioContainers addition for perl-io-scalar |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-io-sessiondata |
shpc-registry automated BioContainers addition for perl-io-sessiondata |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-io-socket-inet6 |
shpc-registry automated BioContainers addition for perl-io-socket-inet6 |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-io-socket-ssl |
shpc-registry automated BioContainers addition for perl-io-socket-ssl |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-io-string |
shpc-registry automated BioContainers addition for perl-io-string |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-io-stringy |
shpc-registry automated BioContainers addition for perl-io-stringy |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-io-tty |
shpc-registry automated BioContainers addition for perl-io-tty |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-io-uncompress-bunzip2 |
shpc-registry automated BioContainers addition for perl-io-uncompress-bunzip2 |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-io-uncompress-gunzip |
shpc-registry automated BioContainers addition for perl-io-uncompress-gunzip |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-io-uncompress-rawinflate |
shpc-registry automated BioContainers addition for perl-io-uncompress-rawinflate |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-io-zlib |
shpc-registry automated BioContainers addition for perl-io-zlib |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-ipc-cmd |
shpc-registry automated BioContainers addition for perl-ipc-cmd |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-ipc-run |
shpc-registry automated BioContainers addition for perl-ipc-run |
|
|
GITHUB
|
quay.io/biocontainers/perl-ipc-run3 |
shpc-registry automated BioContainers addition for perl-ipc-run3 |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-ipc-sharelite |
shpc-registry automated BioContainers addition for perl-ipc-sharelite |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-ipc-system-simple |
shpc-registry automated BioContainers addition for perl-ipc-system-simple |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-jcode |
shpc-registry automated BioContainers addition for perl-jcode |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-json-create |
shpc-registry automated BioContainers addition for perl-json-create |
validjson, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-json-maybexs |
shpc-registry automated BioContainers addition for perl-json-maybexs |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-json-parse |
shpc-registry automated BioContainers addition for perl-json-parse |
validjson, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-json-pp |
shpc-registry automated BioContainers addition for perl-json-pp |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-json-validator |
singularity registry hpc automated addition for perl-json-validator |
hypnotoad, mojo, morbo, yamlpp5-events, yamlpp5-highlight, yamlpp5-load, yamlpp5-load-dump, yamlpp5-parse-emit |
|
GITHUB
|
quay.io/biocontainers/perl-json-xs |
shpc-registry automated BioContainers addition for perl-json-xs |
json_xs, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-json |
shpc-registry automated BioContainers addition for perl-json |
|
|
GITHUB
|
quay.io/biocontainers/perl-lib |
shpc-registry automated BioContainers addition for perl-lib |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-libwww-perl |
shpc-registry automated BioContainers addition for perl-libwww-perl |
lwp-download, lwp-dump, lwp-mirror, lwp-request, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-libxml-perl |
shpc-registry automated BioContainers addition for perl-libxml-perl |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-list-compare |
shpc-registry automated BioContainers addition for perl-list-compare |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-list-moreutils-xs |
shpc-registry automated BioContainers addition for perl-list-moreutils-xs |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-list-moreutils |
shpc-registry automated BioContainers addition for perl-list-moreutils |
|
|
GITHUB
|
quay.io/biocontainers/perl-list-someutils |
shpc-registry automated BioContainers addition for perl-list-someutils |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-list-uniq |
shpc-registry automated BioContainers addition for perl-list-uniq |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-list-util |
shpc-registry automated BioContainers addition for perl-list-util |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-local-lib |
shpc-registry automated BioContainers addition for perl-local-lib |
config_data, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-locale-maketext-simple |
shpc-registry automated BioContainers addition for perl-locale-maketext-simple |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-locale |
shpc-registry automated BioContainers addition for perl-locale |
|
|
GITHUB
|
quay.io/biocontainers/perl-lockfile-simple |
shpc-registry automated BioContainers addition for perl-lockfile-simple |
|
|
GITHUB
|
quay.io/biocontainers/perl-log-any |
shpc-registry automated BioContainers addition for perl-log-any |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-log-log4perl |
shpc-registry automated BioContainers addition for perl-log-log4perl |
l4p-tmpl, dbilogstrip, dbiprof, dbiproxy, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-logger-simple |
shpc-registry automated BioContainers addition for perl-logger-simple |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-lwp-mediatypes |
shpc-registry automated BioContainers addition for perl-lwp-mediatypes |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-lwp-protocol-https |
shpc-registry automated BioContainers addition for perl-lwp-protocol-https |
lwp-download, lwp-dump, lwp-mirror, lwp-request, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-lwp-simple |
shpc-registry automated BioContainers addition for perl-lwp-simple |
lwp-download, lwp-dump, lwp-mirror, lwp-request, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-lyve-set |
shpc-registry automated BioContainers addition for perl-lyve-set |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-mac-propertylist |
shpc-registry automated BioContainers addition for perl-mac-propertylist |
download-entities.pl, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-mailtools |
shpc-registry automated BioContainers addition for perl-mailtools |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-math-base-convert |
shpc-registry automated BioContainers addition for perl-math-base-convert |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-math-bezier |
shpc-registry automated BioContainers addition for perl-math-bezier |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-math-bigint |
shpc-registry automated BioContainers addition for perl-math-bigint |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-math-bigrat |
shpc-registry automated BioContainers addition for perl-math-bigrat |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-math-cdf |
shpc-registry automated BioContainers addition for perl-math-cdf |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-math-combinatorics |
shpc-registry automated BioContainers addition for perl-math-combinatorics |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-math-complex |
shpc-registry automated BioContainers addition for perl-math-complex |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-math-derivative |
shpc-registry automated BioContainers addition for perl-math-derivative |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-math-matrix |
shpc-registry automated BioContainers addition for perl-math-matrix |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-math-matrixreal |
shpc-registry automated BioContainers addition for perl-math-matrixreal |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-math-random-mt-auto |
shpc-registry automated BioContainers addition for perl-math-random-mt-auto |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-math-random |
shpc-registry automated BioContainers addition for perl-math-random |
|
|
GITHUB
|
quay.io/biocontainers/perl-math-round |
shpc-registry automated BioContainers addition for perl-math-round |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-math-spline |
shpc-registry automated BioContainers addition for perl-math-spline |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-math-utils |
shpc-registry automated BioContainers addition for perl-math-utils |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-math-vecstat |
shpc-registry automated BioContainers addition for perl-math-vecstat |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-mce-shared |
shpc-registry automated BioContainers addition for perl-mce-shared |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-mce |
shpc-registry automated BioContainers addition for perl-mce |
|
|
GITHUB
|
quay.io/biocontainers/perl-memoize |
shpc-registry automated BioContainers addition for perl-memoize |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-metabolomics-fragment-annotation |
shpc-registry automated BioContainers addition for perl-metabolomics-fragment-annotation |
xml_grep, xml_merge, xml_pp, xml_spellcheck, xml_split, webtidy, tidyp, htmltree, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-mime-base64 |
shpc-registry automated BioContainers addition for perl-mime-base64 |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-mime-lite |
shpc-registry automated BioContainers addition for perl-mime-lite |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-mime-quotedprint |
shpc-registry automated BioContainers addition for perl-mime-quotedprint |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-mime-tools |
shpc-registry automated BioContainers addition for perl-mime-tools |
binhex.pl, debinhex.pl, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-mime-types |
shpc-registry automated BioContainers addition for perl-mime-types |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-minion-backend-sqlite |
singularity registry hpc automated addition for perl-minion-backend-sqlite |
hypnotoad, mojo, morbo, pg_amcheck, pg_verifybackup, pg_checksums, tzselect, zdump, zic, oid2name, pg_receivewal, pg_resetwal, pg_waldump, vacuumlo, clusterdb, createdb, createuser, dropdb, dropuser, ecpg, initdb, pg_archivecleanup, pg_basebackup, pg_controldata, pg_ctl, pg_dump, pg_dumpall, pg_isready |
|
GITHUB
|
quay.io/biocontainers/perl-minion |
singularity registry hpc automated addition for perl-minion |
hypnotoad, mojo, morbo, pg_amcheck, pg_verifybackup, pg_checksums, tzselect, zdump, zic, oid2name, pg_receivewal, pg_resetwal, pg_waldump, vacuumlo, clusterdb, createdb, createuser, dropdb, dropuser, ecpg, initdb, pg_archivecleanup, pg_basebackup, pg_controldata, pg_ctl, pg_dump, pg_dumpall, pg_isready |
|
GITHUB
|
quay.io/biocontainers/perl-mixin-linewise |
shpc-registry automated BioContainers addition for perl-mixin-linewise |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-mldbm-sync |
shpc-registry automated BioContainers addition for perl-mldbm-sync |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-mldbm |
shpc-registry automated BioContainers addition for perl-mldbm |
|
|
GITHUB
|
quay.io/biocontainers/perl-module-build-tiny |
shpc-registry automated BioContainers addition for perl-module-build-tiny |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-module-build |
shpc-registry automated BioContainers addition for perl-module-build |
|
|
GITHUB
|
quay.io/biocontainers/perl-module-corelist |
shpc-registry automated BioContainers addition for perl-module-corelist |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-module-extract-use |
shpc-registry automated BioContainers addition for perl-module-extract-use |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-module-fromperlver |
shpc-registry automated BioContainers addition for perl-module-fromperlver |
perl-reversion, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-module-implementation |
shpc-registry automated BioContainers addition for perl-module-implementation |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-module-list |
shpc-registry automated BioContainers addition for perl-module-list |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-module-load-conditional |
shpc-registry automated BioContainers addition for perl-module-load-conditional |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-module-load |
shpc-registry automated BioContainers addition for perl-module-load |
|
|
GITHUB
|
quay.io/biocontainers/perl-module-loaded |
shpc-registry automated BioContainers addition for perl-module-loaded |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-module-metadata |
shpc-registry automated BioContainers addition for perl-module-metadata |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-module-pluggable |
shpc-registry automated BioContainers addition for perl-module-pluggable |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-module-runtime-conflicts |
shpc-registry automated BioContainers addition for perl-module-runtime-conflicts |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-module-runtime |
shpc-registry automated BioContainers addition for perl-module-runtime |
|
|
GITHUB
|
quay.io/biocontainers/perl-module-scandeps |
shpc-registry automated BioContainers addition for perl-module-scandeps |
scandeps.pl, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-module-util |
shpc-registry automated BioContainers addition for perl-module-util |
pm_which, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-mojo-pg |
singularity registry hpc automated addition for perl-mojo-pg |
hypnotoad, mojo, morbo, pg_amcheck, pg_verifybackup, pg_checksums, tzselect, zdump, zic, oid2name, pg_receivewal, pg_resetwal, pg_waldump, vacuumlo, clusterdb, createdb, createuser, dropdb, dropuser, ecpg, initdb, pg_archivecleanup, pg_basebackup, pg_controldata, pg_ctl, pg_dump, pg_dumpall, pg_isready |
|
GITHUB
|
quay.io/biocontainers/perl-mojo-sqlite |
singularity registry hpc automated addition for perl-mojo-sqlite |
hypnotoad, mojo, morbo, config_data, dbilogstrip, dbiprof, dbiproxy |
|
GITHUB
|
quay.io/biocontainers/perl-moo |
shpc-registry automated BioContainers addition for perl-moo |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-moose |
shpc-registry automated BioContainers addition for perl-moose |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-moosex-app-role-log4perl |
shpc-registry automated BioContainers addition for perl-moosex-app-role-log4perl |
l4p-tmpl, dbilogstrip, dbiprof, dbiproxy, moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-moosex-app |
shpc-registry automated BioContainers addition for perl-moosex-app |
|
|
GITHUB
|
quay.io/biocontainers/perl-moosex-clone |
shpc-registry automated BioContainers addition for perl-moosex-clone |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-moosex-fileattribute |
shpc-registry automated BioContainers addition for perl-moosex-fileattribute |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-moosex-getopt |
shpc-registry automated BioContainers addition for perl-moosex-getopt |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-moosex-nonmoose |
shpc-registry automated BioContainers addition for perl-moosex-nonmoose |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-moosex-object-pluggable |
shpc-registry automated BioContainers addition for perl-moosex-object-pluggable |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-moosex-role-parameterized |
shpc-registry automated BioContainers addition for perl-moosex-role-parameterized |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-moosex-role-withoverloading |
shpc-registry automated BioContainers addition for perl-moosex-role-withoverloading |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-moosex-singleton |
shpc-registry automated BioContainers addition for perl-moosex-singleton |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-moosex-strictconstructor |
shpc-registry automated BioContainers addition for perl-moosex-strictconstructor |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-moosex-types-path-class |
shpc-registry automated BioContainers addition for perl-moosex-types-path-class |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-moosex-types-path-tiny |
shpc-registry automated BioContainers addition for perl-moosex-types-path-tiny |
moose-outdated, package-stash-conflicts, cpanm, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-moosex-types-stringlike |
shpc-registry automated BioContainers addition for perl-moosex-types-stringlike |
moose-outdated, package-stash-conflicts, cpanm, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-moosex-types |
shpc-registry automated BioContainers addition for perl-moosex-types |
|
|
GITHUB
|
quay.io/biocontainers/perl-mro-compat |
shpc-registry automated BioContainers addition for perl-mro-compat |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-ms |
shpc-registry automated BioContainers addition for perl-ms |
bgzip.pl, cv2storable.pl, index_mzml, index_pepxml, unimod2storable.pl, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-namespace-autoclean |
shpc-registry automated BioContainers addition for perl-namespace-autoclean |
package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-namespace-clean |
shpc-registry automated BioContainers addition for perl-namespace-clean |
package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-net-ftp-recursive |
shpc-registry automated BioContainers addition for perl-net-ftp-recursive |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-net-ftp |
shpc-registry automated BioContainers addition for perl-net-ftp |
|
|
GITHUB
|
quay.io/biocontainers/perl-net-http |
shpc-registry automated BioContainers addition for perl-net-http |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-net-netrc |
shpc-registry automated BioContainers addition for perl-net-netrc |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-net-ssleay |
shpc-registry automated BioContainers addition for perl-net-ssleay |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-ntlm |
shpc-registry automated BioContainers addition for perl-ntlm |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-number-compare |
shpc-registry automated BioContainers addition for perl-number-compare |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-number-format |
shpc-registry automated BioContainers addition for perl-number-format |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-number-misc |
shpc-registry automated BioContainers addition for perl-number-misc |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-number-range |
shpc-registry automated BioContainers addition for perl-number-range |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-number-witherror |
shpc-registry automated BioContainers addition for perl-number-witherror |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-object-insideout |
shpc-registry automated BioContainers addition for perl-object-insideout |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-obogaf-parser |
shpc-registry automated BioContainers addition for perl-obogaf-parser |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-ole-storage_lite |
shpc-registry automated BioContainers addition for perl-ole-storage_lite |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-onto-perl |
shpc-registry automated BioContainers addition for perl-onto-perl |
bioportal_csv2obo.pl, dm_date, dm_zdump, get_ancestor_terms.pl, get_child_terms.pl, get_descendent_terms.pl, get_lowest_common_ancestor.pl, get_obsolete_term_id_vs_def_in_go.pl, get_obsolete_term_id_vs_name_in_go.pl, get_obsolete_terms.pl, get_parent_terms.pl, get_relationship_id_vs_relationship_def.pl, get_relationship_id_vs_relationship_name.pl, get_relationship_id_vs_relationship_namespace.pl, get_relationship_types.pl, get_root_terms.pl, get_subontology_from.pl, get_term_id_vs_term_def.pl, get_term_id_vs_term_name.pl, get_term_id_vs_term_namespace.pl, get_term_local_neighbourhood.pl, get_term_synonyms.pl, get_terms.pl, get_terms_and_synonyms.pl, get_terms_by_name.pl, go2csv.pl, go2owl.pl, goa2rdf.pl, obo2apo.pl, obo2owl.pl, obo2rdf.pl, obo2tran.pl, obo2xml.pl, obo_intersection.pl, obo_transitive_reduction.pl, obo_trimming.pl, obo_union.pl, owl2obo.pl, xpath, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-package-deprecationmanager |
shpc-registry automated BioContainers addition for perl-package-deprecationmanager |
package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-package-stash-xs |
shpc-registry automated BioContainers addition for perl-package-stash-xs |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-package-stash |
shpc-registry automated BioContainers addition for perl-package-stash |
|
|
GITHUB
|
quay.io/biocontainers/perl-padwalker |
shpc-registry automated BioContainers addition for perl-padwalker |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-par-dist |
shpc-registry automated BioContainers addition for perl-par-dist |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-par-packer |
shpc-registry automated BioContainers addition for perl-par-packer |
crc32, par.pl, parl, parldyn, pp, scandeps.pl, tkpp, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-par |
shpc-registry automated BioContainers addition for perl-par |
|
|
GITHUB
|
quay.io/biocontainers/perl-parallel-forkmanager |
shpc-registry automated BioContainers addition for perl-parallel-forkmanager |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-parallel-iterator |
shpc-registry automated BioContainers addition for perl-parallel-iterator |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-parallel-loops |
shpc-registry automated BioContainers addition for perl-parallel-loops |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-params-check |
shpc-registry automated BioContainers addition for perl-params-check |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-params-coerce |
shpc-registry automated BioContainers addition for perl-params-coerce |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-params-util |
shpc-registry automated BioContainers addition for perl-params-util |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-params-validate |
shpc-registry automated BioContainers addition for perl-params-validate |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-params-validationcompiler |
shpc-registry automated BioContainers addition for perl-params-validationcompiler |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-parent |
shpc-registry automated BioContainers addition for perl-parent |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-parse-recdescent |
shpc-registry automated BioContainers addition for perl-parse-recdescent |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-parse-yapp |
shpc-registry automated BioContainers addition for perl-parse-yapp |
yapp, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-path-class |
shpc-registry automated BioContainers addition for perl-path-class |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-path-tiny |
shpc-registry automated BioContainers addition for perl-path-tiny |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-pathtools |
shpc-registry automated BioContainers addition for perl-pathtools |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-pbkdf2-tiny |
shpc-registry automated BioContainers addition for perl-pbkdf2-tiny |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-pcap |
shpc-registry automated BioContainers addition for perl-pcap |
bamToBw.pl, bam_stats.pl, bam_to_sra_sub.pl, bwa_aln.pl, bwa_mem.pl, cgpAppendIdsToVcf.pl, cgpVCFSplit.pl, cover, cpancover, detectExtremeDepth.pl, diff_bams.pl, gcov2perl, gnos_pull.pl, monitor.pl, ppi2html, tab-to-vcf, vcf-haplotypes, xam_coverage_bins.pl, xml_to_bas.pl, fill-aa, fill-an-ac, fill-fs, fill-ref-md5, vcf-annotate, vcf-compare, vcf-concat, vcf-consensus, vcf-contrast, vcf-convert |
|
GITHUB
|
quay.io/biocontainers/perl-pdf-api2 |
shpc-registry automated BioContainers addition for perl-pdf-api2 |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-pdf-table |
shpc-registry automated BioContainers addition for perl-pdf-table |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-pegex |
shpc-registry automated BioContainers addition for perl-pegex |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-perl-osnames |
shpc-registry automated BioContainers addition for perl-perl-osnames |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-perl-ostype |
shpc-registry automated BioContainers addition for perl-perl-ostype |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-perl-unsafe-signals |
shpc-registry automated BioContainers addition for perl-perl-unsafe-signals |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-perl-version |
shpc-registry automated BioContainers addition for perl-perl-version |
perl-reversion, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-perl4-corelibs |
shpc-registry automated BioContainers addition for perl-perl4-corelibs |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-perldoc |
singularity registry hpc automated addition for perl-perldoc |
perl-doc |
|
GITHUB
|
quay.io/biocontainers/perl-perlio-encoding |
shpc-registry automated BioContainers addition for perl-perlio-encoding |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-perlio-gzip |
shpc-registry automated BioContainers addition for perl-perlio-gzip |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-perlio-utf8_strict |
shpc-registry automated BioContainers addition for perl-perlio-utf8_strict |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-perlio |
shpc-registry automated BioContainers addition for perl-perlio |
|
|
GITHUB
|
quay.io/biocontainers/perl-pod-checker |
shpc-registry automated BioContainers addition for perl-pod-checker |
cpanm, podselect, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-pod-coverage-trustpod |
shpc-registry automated BioContainers addition for perl-pod-coverage-trustpod |
pod_cover, cpanm, podselect, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-pod-coverage |
shpc-registry automated BioContainers addition for perl-pod-coverage |
|
|
GITHUB
|
quay.io/biocontainers/perl-pod-elemental |
shpc-registry automated BioContainers addition for perl-pod-elemental |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-pod-escapes |
shpc-registry automated BioContainers addition for perl-pod-escapes |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-pod-eventual |
shpc-registry automated BioContainers addition for perl-pod-eventual |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-pod-parser |
shpc-registry automated BioContainers addition for perl-pod-parser |
cpanm, podselect, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-pod-plaintext |
shpc-registry automated BioContainers addition for perl-pod-plaintext |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-pod-simple-text |
shpc-registry automated BioContainers addition for perl-pod-simple-text |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-pod-simple |
shpc-registry automated BioContainers addition for perl-pod-simple |
|
|
GITHUB
|
quay.io/biocontainers/perl-pod-usage |
shpc-registry automated BioContainers addition for perl-pod-usage |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-posix |
shpc-registry automated BioContainers addition for perl-posix |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-postscript |
shpc-registry automated BioContainers addition for perl-postscript |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-ppi |
shpc-registry automated BioContainers addition for perl-ppi |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-prefork |
shpc-registry automated BioContainers addition for perl-prefork |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-probe-perl |
shpc-registry automated BioContainers addition for perl-probe-perl |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-proc-fork |
shpc-registry automated BioContainers addition for perl-proc-fork |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-readonly |
shpc-registry automated BioContainers addition for perl-readonly |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-retroseq |
singularity registry hpc automated addition for perl-retroseq |
esd2esi, exonerate, exonerate-server, fasta2esd, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds, ipcress, retroseq.pl, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap, groupBy, intersectBed |
|
GITHUB
|
quay.io/biocontainers/perl-return-multilevel |
shpc-registry automated BioContainers addition for perl-return-multilevel |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-role-tiny-with |
shpc-registry automated BioContainers addition for perl-role-tiny-with |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-role-tiny |
shpc-registry automated BioContainers addition for perl-role-tiny |
|
|
GITHUB
|
quay.io/biocontainers/perl-safe |
shpc-registry automated BioContainers addition for perl-safe |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-sanger-cgp-allelecount |
shpc-registry automated BioContainers addition for perl-sanger-cgp-allelecount |
alleleCounter.pl, alleleCounterToJson.pl, cgpAppendIdsToVcf.pl, cgpVCFSplit.pl, cover, cpancover, gcov2perl, tab-to-vcf, vcf-haplotypes, fill-aa, fill-an-ac, fill-fs, fill-ref-md5, vcf-annotate, vcf-compare, vcf-concat, vcf-consensus, vcf-contrast, vcf-convert |
|
GITHUB
|
quay.io/biocontainers/perl-sanger-cgp-battenberg |
shpc-registry automated BioContainers addition for perl-sanger-cgp-battenberg |
alleleCounter, alleleCounter.pl, bamToBw.pl, bam_stats.pl, bam_to_sra_sub.pl, battenberg.pl, battenberg_CN_to_VCF.pl, battenberg_version.pl, bwa_aln.pl, bwa_mem.pl, cgpAppendIdsToVcf.pl, cgpVCFSplit.pl, cover, cpancover, detectExtremeDepth.pl, diff_bams.pl, download_generate_bberg_ref_files.pl, gcov2perl, gnos_pull.pl, impute2, monitor.pl, ppi2html, tab-to-vcf, vcf-haplotypes, xam_coverage_bins.pl, xml_to_bas.pl, fill-aa, fill-an-ac, fill-fs, fill-ref-md5, vcf-annotate, vcf-compare, vcf-concat, vcf-consensus, vcf-contrast, vcf-convert |
|
GITHUB
|
quay.io/biocontainers/perl-sanger-cgp-vagrent |
shpc-registry automated BioContainers addition for perl-sanger-cgp-vagrent |
Admin_CacheFileBuilder.pl, Admin_EnsemblReferenceFileGenerator.pl, Admin_EnsemblTranscriptFilter.pl, Admin_GeneRegionBedDumper.pl, AnnotateVcf.pl, addVagrentContext.pl, l4p-tmpl, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches |
|
GITHUB
|
quay.io/biocontainers/perl-sanger-cgp-vcf |
shpc-registry automated BioContainers addition for perl-sanger-cgp-vcf |
cgpAppendIdsToVcf.pl, cgpVCFSplit.pl, tab-to-vcf, vcf-haplotypes, fill-aa, fill-an-ac, fill-fs, fill-ref-md5, vcf-annotate, vcf-compare, vcf-concat, vcf-consensus, vcf-contrast, vcf-convert |
|
GITHUB
|
quay.io/biocontainers/perl-scalar-list-utils |
shpc-registry automated BioContainers addition for perl-scalar-list-utils |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-scalar-util-numeric |
shpc-registry automated BioContainers addition for perl-scalar-util-numeric |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-scope-guard |
shpc-registry automated BioContainers addition for perl-scope-guard |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-sereal-decoder |
shpc-registry automated BioContainers addition for perl-sereal-decoder |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-sereal-encoder |
shpc-registry automated BioContainers addition for perl-sereal-encoder |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-sereal |
shpc-registry automated BioContainers addition for perl-sereal |
|
|
GITHUB
|
quay.io/biocontainers/perl-set-intervaltree |
shpc-registry automated BioContainers addition for perl-set-intervaltree |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-set-intspan |
shpc-registry automated BioContainers addition for perl-set-intspan |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-set-object |
singularity registry hpc automated addition for perl-set-object |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-set-scalar |
shpc-registry automated BioContainers addition for perl-set-scalar |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-slurp |
shpc-registry automated BioContainers addition for perl-slurp |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-snap |
shpc-registry automated BioContainers addition for perl-snap |
SNAP.pl, SNAPstats.pl, codons-xyplot.pl, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-soap-lite |
shpc-registry automated BioContainers addition for perl-soap-lite |
SOAPsh.pl, stubmaker.pl, binhex.pl, debinhex.pl, lwp-download, lwp-dump, lwp-mirror, lwp-request, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-socket |
shpc-registry automated BioContainers addition for perl-socket |
|
|
GITHUB
|
quay.io/biocontainers/perl-socket6 |
shpc-registry automated BioContainers addition for perl-socket6 |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-sort-key |
shpc-registry automated BioContainers addition for perl-sort-key |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-sort-mergesort |
shpc-registry automated BioContainers addition for perl-sort-mergesort |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-sort-naturally |
shpc-registry automated BioContainers addition for perl-sort-naturally |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-sort-versions |
shpc-registry automated BioContainers addition for perl-sort-versions |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-specio-exporter |
shpc-registry automated BioContainers addition for perl-specio-exporter |
config_data, cpanm, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-specio |
shpc-registry automated BioContainers addition for perl-specio |
|
|
GITHUB
|
quay.io/biocontainers/perl-spiffy |
shpc-registry automated BioContainers addition for perl-spiffy |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-spreadsheet-parseexcel |
shpc-registry automated BioContainers addition for perl-spreadsheet-parseexcel |
map, mirrorMappings, mkCSGB2312, mkmapfile, chartex, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-spreadsheet-writeexcel |
shpc-registry automated BioContainers addition for perl-spreadsheet-writeexcel |
chartex, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-sql-abstract |
singularity registry hpc automated addition for perl-sql-abstract |
config_data |
|
GITHUB
|
quay.io/biocontainers/perl-sql-statement |
shpc-registry automated BioContainers addition for perl-sql-statement |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-statistics-basic |
shpc-registry automated BioContainers addition for perl-statistics-basic |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-statistics-caseresampling |
shpc-registry automated BioContainers addition for perl-statistics-caseresampling |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-statistics-descriptive |
shpc-registry automated BioContainers addition for perl-statistics-descriptive |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-statistics-distributions |
shpc-registry automated BioContainers addition for perl-statistics-distributions |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-statistics-frequency |
shpc-registry automated BioContainers addition for perl-statistics-frequency |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-statistics-lite |
shpc-registry automated BioContainers addition for perl-statistics-lite |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-statistics-r |
shpc-registry automated BioContainers addition for perl-statistics-r |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-statistics-ttest |
shpc-registry automated BioContainers addition for perl-statistics-ttest |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-storable |
shpc-registry automated BioContainers addition for perl-storable |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-string-approx |
shpc-registry automated BioContainers addition for perl-string-approx |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-string-diff |
shpc-registry automated BioContainers addition for perl-string-diff |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-string-escape |
shpc-registry automated BioContainers addition for perl-string-escape |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-string-random |
shpc-registry automated BioContainers addition for perl-string-random |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-string-rewriteprefix |
shpc-registry automated BioContainers addition for perl-string-rewriteprefix |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-string-truncate |
shpc-registry automated BioContainers addition for perl-string-truncate |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-string-util |
shpc-registry automated BioContainers addition for perl-string-util |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-sub-attribute |
shpc-registry automated BioContainers addition for perl-sub-attribute |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-sub-exporter-formethods |
shpc-registry automated BioContainers addition for perl-sub-exporter-formethods |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-sub-exporter-progressive |
shpc-registry automated BioContainers addition for perl-sub-exporter-progressive |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-sub-exporter |
shpc-registry automated BioContainers addition for perl-sub-exporter |
|
|
GITHUB
|
quay.io/biocontainers/perl-sub-identify |
shpc-registry automated BioContainers addition for perl-sub-identify |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-sub-info |
shpc-registry automated BioContainers addition for perl-sub-info |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-sub-install |
shpc-registry automated BioContainers addition for perl-sub-install |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-sub-name |
shpc-registry automated BioContainers addition for perl-sub-name |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-sub-quote |
shpc-registry automated BioContainers addition for perl-sub-quote |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-sub-uplevel |
shpc-registry automated BioContainers addition for perl-sub-uplevel |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-super |
shpc-registry automated BioContainers addition for perl-super |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-svg-graph |
shpc-registry automated BioContainers addition for perl-svg-graph |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-svg |
shpc-registry automated BioContainers addition for perl-svg |
|
|
GITHUB
|
quay.io/biocontainers/perl-symbol-util |
shpc-registry automated BioContainers addition for perl-symbol-util |
cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-symbol |
shpc-registry automated BioContainers addition for perl-symbol |
|
|
GITHUB
|
quay.io/biocontainers/perl-sys-info-base |
shpc-registry automated BioContainers addition for perl-sys-info-base |
tts, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-sys-info-driver-linux |
shpc-registry automated BioContainers addition for perl-sys-info-driver-linux |
tts, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-sys-info |
shpc-registry automated BioContainers addition for perl-sys-info |
|
|
GITHUB
|
quay.io/biocontainers/perl-sys-sigaction |
shpc-registry automated BioContainers addition for perl-sys-sigaction |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-tap-harness-env |
shpc-registry automated BioContainers addition for perl-tap-harness-env |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-task-weaken |
shpc-registry automated BioContainers addition for perl-task-weaken |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-template-toolkit |
shpc-registry automated BioContainers addition for perl-template-toolkit |
imgsize, tpage, ttree, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-term-app-roles |
shpc-registry automated BioContainers addition for perl-term-app-roles |
moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-term-detect-software |
shpc-registry automated BioContainers addition for perl-term-detect-software |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-term-encoding |
shpc-registry automated BioContainers addition for perl-term-encoding |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-term-progressbar |
shpc-registry automated BioContainers addition for perl-term-progressbar |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-term-table |
shpc-registry automated BioContainers addition for perl-term-table |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-termreadkey |
shpc-registry automated BioContainers addition for perl-termreadkey |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-base |
shpc-registry automated BioContainers addition for perl-test-base |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-builder-tester |
shpc-registry automated BioContainers addition for perl-test-builder-tester |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-class-moose |
shpc-registry automated BioContainers addition for perl-test-class-moose |
pm_which, moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-classapi |
shpc-registry automated BioContainers addition for perl-test-classapi |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-cleannamespaces |
shpc-registry automated BioContainers addition for perl-test-cleannamespaces |
package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-cpan-meta |
shpc-registry automated BioContainers addition for perl-test-cpan-meta |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-deep |
shpc-registry automated BioContainers addition for perl-test-deep |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-differences |
shpc-registry automated BioContainers addition for perl-test-differences |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-test-eol |
shpc-registry automated BioContainers addition for perl-test-eol |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-exception |
shpc-registry automated BioContainers addition for perl-test-exception |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-exec |
shpc-registry automated BioContainers addition for perl-test-exec |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-fatal |
shpc-registry automated BioContainers addition for perl-test-fatal |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-file-contents |
shpc-registry automated BioContainers addition for perl-test-file-contents |
pod_cover, cpanm, podselect, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-file |
shpc-registry automated BioContainers addition for perl-test-file |
|
|
GITHUB
|
quay.io/biocontainers/perl-test-files |
shpc-registry automated BioContainers addition for perl-test-files |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-fork |
shpc-registry automated BioContainers addition for perl-test-fork |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-harness |
shpc-registry automated BioContainers addition for perl-test-harness |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-inter |
shpc-registry automated BioContainers addition for perl-test-inter |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-leaktrace |
shpc-registry automated BioContainers addition for perl-test-leaktrace |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-lectrotest |
shpc-registry automated BioContainers addition for perl-test-lectrotest |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-longstring |
shpc-registry automated BioContainers addition for perl-test-longstring |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-memory-cycle |
shpc-registry automated BioContainers addition for perl-test-memory-cycle |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-mockmodule |
shpc-registry automated BioContainers addition for perl-test-mockmodule |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-more |
shpc-registry automated BioContainers addition for perl-test-more |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-test-most |
shpc-registry automated BioContainers addition for perl-test-most |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-needs |
shpc-registry automated BioContainers addition for perl-test-needs |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-notabs |
shpc-registry automated BioContainers addition for perl-test-notabs |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-nowarnings |
shpc-registry automated BioContainers addition for perl-test-nowarnings |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-object |
shpc-registry automated BioContainers addition for perl-test-object |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-output |
shpc-registry automated BioContainers addition for perl-test-output |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-pod-coverage |
shpc-registry automated BioContainers addition for perl-test-pod-coverage |
pod_cover, cpanm, podselect, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-pod |
shpc-registry automated BioContainers addition for perl-test-pod |
|
|
GITHUB
|
quay.io/biocontainers/perl-test-prereq |
shpc-registry automated BioContainers addition for perl-test-prereq |
config_data, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-requires |
shpc-registry automated BioContainers addition for perl-test-requires |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-requiresinternet |
shpc-registry automated BioContainers addition for perl-test-requiresinternet |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-script |
shpc-registry automated BioContainers addition for perl-test-script |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-simple |
shpc-registry automated BioContainers addition for perl-test-simple |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-subcalls |
shpc-registry automated BioContainers addition for perl-test-subcalls |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-sys-info |
shpc-registry automated BioContainers addition for perl-test-sys-info |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-toolbox |
shpc-registry automated BioContainers addition for perl-test-toolbox |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-trap |
shpc-registry automated BioContainers addition for perl-test-trap |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-unit-lite |
shpc-registry automated BioContainers addition for perl-test-unit-lite |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-utf8 |
shpc-registry automated BioContainers addition for perl-test-utf8 |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-warn |
shpc-registry automated BioContainers addition for perl-test-warn |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-warnings |
shpc-registry automated BioContainers addition for perl-test-warnings |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-without-module |
shpc-registry automated BioContainers addition for perl-test-without-module |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test-xml |
shpc-registry automated BioContainers addition for perl-test-xml |
xpath, xml_grep, xml_merge, xml_pp, xml_spellcheck, xml_split, webtidy, tidyp, htmltree, perl5.32.1 |
|
GITHUB
|
quay.io/biocontainers/perl-test-yaml |
shpc-registry automated BioContainers addition for perl-test-yaml |
test-yaml, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test |
shpc-registry automated BioContainers addition for perl-test |
|
|
GITHUB
|
quay.io/biocontainers/perl-test2-plugin-nowarnings |
shpc-registry automated BioContainers addition for perl-test2-plugin-nowarnings |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test2-suite |
shpc-registry automated BioContainers addition for perl-test2-suite |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-test2 |
shpc-registry automated BioContainers addition for perl-test2 |
|
|
GITHUB
|
quay.io/biocontainers/perl-text-abbrev |
shpc-registry automated BioContainers addition for perl-text-abbrev |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-text-ansitable |
shpc-registry automated BioContainers addition for perl-text-ansitable |
ansitable-list-border-styles, ansitable-list-color-themes, ansitable-list-style-sets, moose-outdated, package-stash-conflicts, cpanm, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-text-asciitable |
shpc-registry automated BioContainers addition for perl-text-asciitable |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-text-balanced |
shpc-registry automated BioContainers addition for perl-text-balanced |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-text-csv |
shpc-registry automated BioContainers addition for perl-text-csv |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-text-csv_xs |
shpc-registry automated BioContainers addition for perl-text-csv_xs |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-text-diff |
shpc-registry automated BioContainers addition for perl-text-diff |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-text-format |
shpc-registry automated BioContainers addition for perl-text-format |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-text-glob |
shpc-registry automated BioContainers addition for perl-text-glob |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-text-levenshtein |
shpc-registry automated BioContainers addition for perl-text-levenshtein |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-text-levenshteinxs |
shpc-registry automated BioContainers addition for perl-text-levenshteinxs |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-text-nsp |
shpc-registry automated BioContainers addition for perl-text-nsp |
combig-script.sh, combig.pl, count.pl, count2huge.pl, find-compounds.pl, huge-count.pl, huge-delete.pl, huge-merge.pl, huge-sort.pl, huge-split.pl, kocos-script.sh, kocos.pl, rank-script.sh, rank.pl, statistic.pl, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-text-parsewords |
shpc-registry automated BioContainers addition for perl-text-parsewords |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-text-soundex |
shpc-registry automated BioContainers addition for perl-text-soundex |
perl5.22.0, c2ph, pstruct, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-text-tabs-wrap |
shpc-registry automated BioContainers addition for perl-text-tabs-wrap |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-text-tabs |
shpc-registry automated BioContainers addition for perl-text-tabs |
|
|
GITHUB
|
quay.io/biocontainers/perl-text-template-simple |
shpc-registry automated BioContainers addition for perl-text-template-simple |
tts, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-text-template |
shpc-registry automated BioContainers addition for perl-text-template |
|
|
GITHUB
|
quay.io/biocontainers/perl-text-wrap |
shpc-registry automated BioContainers addition for perl-text-wrap |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-threaded |
shpc-registry automated BioContainers addition for perl-threaded |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-tie-cache |
shpc-registry automated BioContainers addition for perl-tie-cache |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-tie-cacher |
shpc-registry automated BioContainers addition for perl-tie-cacher |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-tie-hash-indexed |
shpc-registry automated BioContainers addition for perl-tie-hash-indexed |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-tie-hash |
shpc-registry automated BioContainers addition for perl-tie-hash |
|
|
GITHUB
|
quay.io/biocontainers/perl-tie-ixhash |
shpc-registry automated BioContainers addition for perl-tie-ixhash |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-tie-log4perl |
shpc-registry automated BioContainers addition for perl-tie-log4perl |
l4p-tmpl, dbilogstrip, dbiprof, dbiproxy, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-tie-refhash-weak |
shpc-registry automated BioContainers addition for perl-tie-refhash-weak |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-tie-refhash |
shpc-registry automated BioContainers addition for perl-tie-refhash |
|
|
GITHUB
|
quay.io/biocontainers/perl-tie-toobject |
shpc-registry automated BioContainers addition for perl-tie-toobject |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-time-hires |
shpc-registry automated BioContainers addition for perl-time-hires |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-time-local |
shpc-registry automated BioContainers addition for perl-time-local |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-time-piece |
shpc-registry automated BioContainers addition for perl-time-piece |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-timedate |
shpc-registry automated BioContainers addition for perl-timedate |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-tree-dag_node |
shpc-registry automated BioContainers addition for perl-tree-dag_node |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-try-tiny-retry |
shpc-registry automated BioContainers addition for perl-try-tiny-retry |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-try-tiny |
shpc-registry automated BioContainers addition for perl-try-tiny |
|
|
GITHUB
|
quay.io/biocontainers/perl-type-tiny |
shpc-registry automated BioContainers addition for perl-type-tiny |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-types-serialiser |
shpc-registry automated BioContainers addition for perl-types-serialiser |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-types-standard |
shpc-registry automated BioContainers addition for perl-types-standard |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-unicode-map |
shpc-registry automated BioContainers addition for perl-unicode-map |
map, mirrorMappings, mkCSGB2312, mkmapfile, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-unicode-normalize |
shpc-registry automated BioContainers addition for perl-unicode-normalize |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-unicode-stringprep |
shpc-registry automated BioContainers addition for perl-unicode-stringprep |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-unicode-utf8 |
shpc-registry automated BioContainers addition for perl-unicode-utf8 |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-uri-db |
singularity registry hpc automated addition for perl-uri-db |
|
|
GITHUB
|
quay.io/biocontainers/perl-uri-nested |
singularity registry hpc automated addition for perl-uri-nested |
|
|
GITHUB
|
quay.io/biocontainers/perl-uri |
shpc-registry automated BioContainers addition for perl-uri |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-url-encode |
singularity registry hpc automated addition for perl-url-encode |
|
|
GITHUB
|
quay.io/biocontainers/perl-util-properties |
shpc-registry automated BioContainers addition for perl-util-properties |
lwp-download, lwp-dump, lwp-mirror, lwp-request, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-variable-magic |
shpc-registry automated BioContainers addition for perl-variable-magic |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-vars |
shpc-registry automated BioContainers addition for perl-vars |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-vcftools-vcf |
shpc-registry automated BioContainers addition for perl-vcftools-vcf |
perl5.22.0, c2ph, pstruct, podselect |
|
GITHUB
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quay.io/biocontainers/perl-velvetoptimiser |
shpc-registry automated BioContainers addition for perl-velvetoptimiser |
VelvetOptimiser.pl, velvetg, velveth, gifecho, gifinto, gdlib-config, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml |
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GITHUB
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quay.io/biocontainers/perl-version-next |
shpc-registry automated BioContainers addition for perl-version-next |
perl-reversion, perl5.32.1, streamzip |
|
GITHUB
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quay.io/biocontainers/perl-version |
shpc-registry automated BioContainers addition for perl-version |
|
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GITHUB
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quay.io/biocontainers/perl-want |
shpc-registry automated BioContainers addition for perl-want |
perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/perl-warnings-register |
shpc-registry automated BioContainers addition for perl-warnings-register |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-www-mechanize |
shpc-registry automated BioContainers addition for perl-www-mechanize |
mech-dump, config_data, htmltree, lwp-download, lwp-dump, lwp-mirror, lwp-request, cpanm, perl5.26.2, podselect |
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GITHUB
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quay.io/biocontainers/perl-www-robotrules |
shpc-registry automated BioContainers addition for perl-www-robotrules |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-xml-dom-xpath |
shpc-registry automated BioContainers addition for perl-xml-dom-xpath |
lwp-download, lwp-dump, lwp-mirror, lwp-request, perl5.32.1, streamzip |
|
GITHUB
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quay.io/biocontainers/perl-xml-dom |
shpc-registry automated BioContainers addition for perl-xml-dom |
|
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GITHUB
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quay.io/biocontainers/perl-xml-entities |
shpc-registry automated BioContainers addition for perl-xml-entities |
download-entities.pl, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-xml-filter-buffertext |
shpc-registry automated BioContainers addition for perl-xml-filter-buffertext |
perl5.32.1, streamzip |
|
GITHUB
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quay.io/biocontainers/perl-xml-libxml |
shpc-registry automated BioContainers addition for perl-xml-libxml |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-xml-libxslt |
shpc-registry automated BioContainers addition for perl-xml-libxslt |
xml2-config.bak, xslt-config, xsltproc, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-xml-namespacesupport |
shpc-registry automated BioContainers addition for perl-xml-namespacesupport |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-xml-parser-lite |
shpc-registry automated BioContainers addition for perl-xml-parser-lite |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-xml-parser |
shpc-registry automated BioContainers addition for perl-xml-parser |
|
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GITHUB
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quay.io/biocontainers/perl-xml-regexp |
shpc-registry automated BioContainers addition for perl-xml-regexp |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-xml-sax-base |
shpc-registry automated BioContainers addition for perl-xml-sax-base |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-xml-sax-expat |
shpc-registry automated BioContainers addition for perl-xml-sax-expat |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-xml-sax-writer |
shpc-registry automated BioContainers addition for perl-xml-sax-writer |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-xml-sax |
shpc-registry automated BioContainers addition for perl-xml-sax |
|
|
GITHUB
|
quay.io/biocontainers/perl-xml-semanticdiff |
shpc-registry automated BioContainers addition for perl-xml-semanticdiff |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-xml-simple |
shpc-registry automated BioContainers addition for perl-xml-simple |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-xml-twig |
shpc-registry automated BioContainers addition for perl-xml-twig |
xml_grep, xml_merge, xml_pp, xml_spellcheck, xml_split, webtidy, tidyp, htmltree, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-xml-writer |
shpc-registry automated BioContainers addition for perl-xml-writer |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-xml-xpath |
shpc-registry automated BioContainers addition for perl-xml-xpath |
xpath, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-xml-xpathengine |
shpc-registry automated BioContainers addition for perl-xml-xpathengine |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-xsloader |
shpc-registry automated BioContainers addition for perl-xsloader |
perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/perl-xxx |
shpc-registry automated BioContainers addition for perl-xxx |
yamlpp5-events, yamlpp5-highlight, yamlpp5-load, yamlpp5-load-dump, yamlpp5-parse-emit, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-yaml-libyaml |
shpc-registry automated BioContainers addition for perl-yaml-libyaml |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-yaml-pp |
shpc-registry automated BioContainers addition for perl-yaml-pp |
yamlpp5-events, yamlpp5-highlight, yamlpp5-load, yamlpp5-load-dump, yamlpp5-parse-emit, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-yaml-tiny |
shpc-registry automated BioContainers addition for perl-yaml-tiny |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/perl-yaml |
shpc-registry automated BioContainers addition for perl-yaml |
|
|
GITHUB
|
quay.io/biocontainers/perl |
shpc-registry automated BioContainers addition for perl |
|
|
GITHUB
|
quay.io/biocontainers/pfam_scan |
shpc-registry automated BioContainers addition for pfam_scan |
pfam_scan.pl, bp_pairwise_kaks.pl, bp_search2BSML.pl, bp_aacomp.pl, bp_biofetch_genbank_proxy.pl, bp_bioflat_index.pl, bp_biogetseq.pl, bp_blast2tree.pl, bp_bulk_load_gff.pl, bp_chaos_plot.pl, bp_classify_hits_kingdom.pl |
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GITHUB
|
quay.io/biocontainers/pfp |
singularity registry hpc automated addition for pfp |
check, check64, exprop, exprop64, mpfp++, mpfp++64, pfp++, pfp++64, vcf_to_fa, htsfile, bgzip, tabix |
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GITHUB
|
quay.io/biocontainers/pftools |
shpc-registry automated BioContainers addition for pftools |
2ft, 6ft, compare_2_profiles.pl, fasta_to_fastq.pl, gtop, htop, make_iupac_cmp.pl, pfcalibrateV3, pfdump, pfemit, pfindex, pfmake, pfpam, pfscale, pfscan, pfscanV3, pfsearch, pfsearchV3, pfw, ps_scan.pl, psa2msa, ptof, ptoh, scramble_fasta.pl, sort_fasta.pl, split_profile_file.pl, perl5.32.1, streamzip |
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GITHUB
|
quay.io/biocontainers/pgcgap |
shpc-registry automated BioContainers addition for pgcgap |
COG.pl, Plot_ANIheatmap.R, Plot_COG.R, Plot_COG_Abundance.R, Plot_MashHeatmap.R, _gdlib-config, abricate, abricate-get_db, abyss-stack-size, alignGFA, bogart, bogus, canu, canu-time, correctOverlaps, create_pan_genome, create_pan_genome_plots.R, dumpBlob, edalign, errorEstimate, extract_proteome_from_gff, falconsense, fastme, filterCorrectionLayouts, filterCorrectionOverlaps, findErrors, findErrors-Dump, fmplot.py, gawk-5.0.1, generateCorrectionLayouts, get_ANImatrix.pl, get_Mash_Matrix.pl, get_flag_relative_abundances_table.pl, gubbins, iterative_cdhit, loadCorrectedReads, loadErates, loadTrimmedReads, mergeRanges, meryl-import, meryl-lookup, mhapConvert, mmapConvert, orthofinder, ovStoreBucketizer, ovStoreBuild, ovStoreConfig, ovStoreDump, ovStoreIndexer, ovStoreSorter, ovStoreStats, overlapAlign, overlapConvert, overlapImport, overlapInCore, overlapInCorePartition, overlapPair, pal2nal.pl, pan_genome_assembly_statistics, pan_genome_core_alignment, pan_genome_post_analysis, pan_genome_reorder_spreadsheet, parallel_all_against_all_blastp, pgcgap, plot_3Dpie.R, prefixEditDistance-matchLimitGenerate, protein_alignment_from_nucleotides, query_pan_genome, roary, roary-create_pan_genome_plots.R, roary-pan_genome_reorder_spreadsheet, roary-query_pan_genome, roary-unique_genes_per_sample, run_gubbins.py, sequence, sickle, snippy, snippy-clean_full_aln, snippy-core, snippy-multi, snippy-vcf_extract_subs, snippy-vcf_report, snippy-vcf_to_tab, splitHaplotype, splitReads, sqStoreCreate, sqStoreCreatePartition, sqStoreDumpFASTQ, sqStoreDumpMetaData, tgStoreCompress, tgStoreDump, tgStoreFilter, tgStoreLoad, tgTigDisplay, transfer_annotation_to_groups, triangle2list.pl, trimReads, utgcns, vcfnormalizesvs, vcfnull2ref, vcfunphase, wtdbgConvert, yapp, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject |
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GITHUB
|
quay.io/biocontainers/pgdspider |
shpc-registry automated BioContainers addition for pgdspider |
PGDSpider2-cli, PGDSpider2-gui, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/pgenlib |
singularity registry hpc automated addition for pgenlib |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/pggb |
shpc-registry automated BioContainers addition for pggb |
gfaffix, odgi, pggb, rich-click, seqwish, smoothxg, time, vg, wfmash, multiqc, bc, dc, cmark, gff2gff.py, coloredlogs, humanfriendly, pigz, unpigz, markdown_py |
|
GITHUB
|
quay.io/biocontainers/pglite |
shpc-registry automated BioContainers addition for pglite |
pglite |
|
GITHUB
|
quay.io/biocontainers/pgma-simple |
shpc-registry automated BioContainers addition for pgma-simple |
pgma |
|
GITHUB
|
quay.io/biocontainers/pgr-tk |
singularity registry hpc automated addition for pgr-tk |
pgr-mdb, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/pgrc |
singularity registry hpc automated addition for pgrc |
PgRC |
|
GITHUB
|
quay.io/biocontainers/pgsa |
shpc-registry automated BioContainers addition for pgsa |
PgSAgen, PgSAtest |
|
GITHUB
|
quay.io/biocontainers/pgscatalog-utils |
singularity registry hpc automated addition for pgscatalog-utils |
pgscatalog-aggregate, pgscatalog-ancestry-adjust, pgscatalog-combine, pgscatalog-download, pgscatalog-intersect, pgscatalog-match, pgscatalog-matchmerge, pgscatalog-relabel, protoc-25.3.0, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave, nl-link-ifindex2name, nl-link-list |
|
GITHUB
|
quay.io/biocontainers/pgscatalog.calc |
singularity registry hpc automated addition for pgscatalog.calc |
pgscatalog-aggregate, pgscatalog-ancestry-adjust, pgscatalog-combine, pgscatalog-download, pgscatalog-relabel, protoc-25.3.0, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave, nl-link-ifindex2name, nl-link-list |
|
GITHUB
|
quay.io/biocontainers/pgscatalog.core |
singularity registry hpc automated addition for pgscatalog.core |
pgscatalog-combine, pgscatalog-download, pgscatalog-relabel, httpx, pbunzip2, pbzcat, pbzip2, igzip, pigz, unpigz, natsort, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tqdm |
|
GITHUB
|
quay.io/biocontainers/pgscatalog.match |
singularity registry hpc automated addition for pgscatalog.match |
pgscatalog-combine, pgscatalog-download, pgscatalog-intersect, pgscatalog-match, pgscatalog-matchmerge, pgscatalog-relabel, protoc-25.3.0, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave, nl-link-ifindex2name, nl-link-list |
|
GITHUB
|
quay.io/biocontainers/pgx-pipe-helper |
shpc-registry automated BioContainers addition for pgx-pipe-helper |
complete_locus, locus2bed, validate_locus, snakemake, snakemake-bash-completion, jp.py, cxpm, sxpm, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign |
|
GITHUB
|
quay.io/biocontainers/pgx-variant-tools |
shpc-registry automated BioContainers addition for pgx-variant-tools |
|
|
GITHUB
|
quay.io/biocontainers/pgzip |
singularity registry hpc automated addition for pgzip |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/phables |
singularity registry hpc automated addition for phables |
bsdcat, bsdcpio, bsdtar, conda2solv, dumpsolv, installcheck, mamba, mamba-package, markdown-it, mergesolv, phables, repo2solv, testsolv, stone, conda-env, cph, plac_runner.py, yte, docutils, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, pulptest, cbc, clp, humanfriendly, snakemake, snakemake-bash-completion, jp.py, tabulate, py.test, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen |
|
GITHUB
|
quay.io/biocontainers/phabox |
singularity registry hpc automated addition for phabox |
Cherry_single, PhaGCN_single, PhaMer_single, PhaTYP_single, checksum-profile, datasets-cli, elastishadow, huggingface-cli, phabox, pprodigal, transformers-cli, torch_shm_manager, get_gprof, protoc-25.3.0, xxh128sum, xxh32sum, xxh64sum, xxhsum, isympy, torchrun, convert-caffe2-to-onnx, convert-onnx-to-caffe2, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, numpy-config, elasticurl, elasticurl_cpp, elastipubsub, get_objgraph, undill, csv-import, orc-memory, orc-scan, timezone-dump |
|
GITHUB
|
quay.io/biocontainers/phamb |
singularity registry hpc automated addition for phamb |
run_RF.py, run_RF_modules.py, split_contigs.py, vambtools.py, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/phame |
shpc-registry automated BioContainers addition for phame |
CanSNPs.pl, ParseTree.pl, SNP_INDEL_count.pl, SNP_analysis.pl, buildSNPDB.pl, catAlign.pl, ccmake, checkNUCmer.pl, cmake, cpack, ctest, demuxbyname2.sh, ed2k-link, edonr256-hash, edonr512-hash, extractGenes.pl, get_repeat_coords.pl, gost-hash, has160-hash, hyphy, magnet-link, pal2nal.pl, parallel_run.pl, parseGapsNUCmer.pl, parseSitePAML.pl, phame, removeGaps.pl, removeRepeats.pl, rhash, runContigNUCmer.pl, runHyPhy.pl, runNUCmer.pl, runPAML.pl, runReadsMapping.pl, runReadsToGenome.pl, sfv-hash, tiger-hash, translate.pl, tth-hash, whirlpool-hash, addssu.sh, adjusthomopolymers.sh, analyzeaccession.sh, analyzegenes.sh, applyvariants.sh, bbcms.sh, bloomfilter.sh, callgenes.sh, comparegff.sh, consensus.sh |
|
GITHUB
|
quay.io/biocontainers/phanotate |
shpc-registry automated BioContainers addition for phanotate |
EukHighConfidenceFilter, covels-SE, coves-SE, eufindtRNA, fasta2gsi, phanotate.py, sstofa, tRNAscan-SE, tRNAscan-SE.conf, trnascan-1.4, cmalign, cmbuild, cmcalibrate, cmconvert, cmemit, cmfetch, cmpress, cmscan, cmsearch, cmstat |
|
GITHUB
|
quay.io/biocontainers/phantasm |
singularity registry hpc automated addition for phantasm |
average_nucleotide_identity.py, delta_filter_wrapper.py, genbank_get_genomes_by_taxon.py, generax, phantasm, pysemver, xenoGI, iqtree2, blastn_vdb, tblastn_vdb, iqtree, pcre2posix_test, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb, impala, makemat, megablast, uuid, uuid-config, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc |
|
GITHUB
|
quay.io/biocontainers/phantompeakqualtools |
shpc-registry automated BioContainers addition for phantompeakqualtools |
run_spp.R, gawk-5.1.0, awk, gawk, fasta-sanitize.pl, plot-ampliconstats, f2py3.9, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl |
|
GITHUB
|
quay.io/biocontainers/pharokka |
singularity registry hpc automated addition for pharokka |
EukHighConfidenceFilter, MitoHighConfidenceFilter, covels-SE, coves-SE, databases.py, eufindtRNA, fasta2gsi, input_commands.py, install_databases.py, phanotate.py, pharokka.py, post_processing.py, processes.py, pyrodigal, sstofa, tRNAscan-SE, tRNAscan-SE.conf, tjbench, trnascan-1.4, version.py, mmseqs, minced, aragorn, jpackage, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, cmalign, cmbuild, cmcalibrate, cmconvert, cmemit, cmfetch, cmpress, cmscan, cmsearch, cmstat, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py |
|
GITHUB
|
quay.io/biocontainers/phaser |
singularity registry hpc automated addition for phaser |
phaser.py, phaser_annotate.py, phaser_gene_ae.py, vcf_sample_filter.py, vcf_filter.py, vcf_melt, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/phasius |
singularity registry hpc automated addition for phasius |
phasius |
|
GITHUB
|
quay.io/biocontainers/phast |
shpc-registry automated BioContainers addition for phast |
all_dists, base_evolve, chooseLines, clean_genes, consEntropy, convert_coords, display_rate_matrix, dless, dlessP, draw_tree, eval_predictions, exoniphy, hmm_train, hmm_tweak, hmm_view, indelFit, indelHistory, maf_parse, makeHKY, modFreqs, msa_diff, msa_split, msa_view, pbsDecode, pbsEncode, pbsScoreMatrix, pbsTrain, phast, phastBias, phastCons, phastMotif, phastOdds, phyloBoot, phyloFit, phyloP, prequel, refeature, stringiphy, treeGen, tree_doctor |
|
GITHUB
|
quay.io/biocontainers/phastaf |
shpc-registry automated BioContainers addition for phastaf |
phastaf, any2fasta, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod |
|
GITHUB
|
quay.io/biocontainers/phate |
shpc-registry automated BioContainers addition for phate |
fonttools, pyftmerge, pyftsubset, ttx, brotli, futurize, pasteurize, f2py3.10, img2webp, cwebp |
|
GITHUB
|
quay.io/biocontainers/phava |
singularity registry hpc automated addition for phava |
gawk-5.3.0, gawkbug, phava, aria2c, annot-tsv, xmlget, xmltext, aaindexextract, abiview, acdgalaxy, acdlog, acdpretty, acdtable, acdtrace, acdvalid, aligncopy, aligncopypair, antigenic, assemblyget, backtranambig, backtranseq, banana, biosed, btwisted, cachedas, cachedbfetch, cacheebeyesearch, cacheensembl |
|
GITHUB
|
quay.io/biocontainers/phcue-ck |
singularity registry hpc automated addition for phcue-ck |
phcue-ck |
|
GITHUB
|
quay.io/biocontainers/pheniqs |
shpc-registry automated BioContainers addition for pheniqs |
pheniqs, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/phenix |
shpc-registry automated BioContainers addition for phenix |
GenomeAnalysisTK, filter_vcf.py, gatk-register, phenix.py, prepare_reference.py, run_snp_pipeline.py, vcf2distancematrix.py, vcf2fasta.py, vcf2json.py, gatk, picard, vcf_sample_filter.py, vcf_filter.py, vcf_melt, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l |
|
GITHUB
|
quay.io/biocontainers/phenograph |
singularity registry hpc automated addition for phenograph |
igraph, numpy-config, glpsol, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/phertilizer |
singularity registry hpc automated addition for phertilizer |
phertilizer, numba, pycc, diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts, transform, rsvg-convert, gtk-builder-convert, gtk-demo, gtk-query-immodules-2.0, gtk-update-icon-cache, acyclic, bcomps, ccomps, circo, dijkstra, dot, dot2gxl |
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GITHUB
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quay.io/biocontainers/phiercc |
singularity registry hpc automated addition for phiercc |
HCCeval, pHierCC, numba, pycc, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.8, opj_compress, opj_decompress, opj_dump, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/phigaro |
shpc-registry automated BioContainers addition for phigaro |
phigaro, phigaro-setup, prodigal, hmmpgmd_shard, easel, esl-mixdchlet, f2py3.6, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid |
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GITHUB
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quay.io/biocontainers/phip-stat |
singularity registry hpc automated addition for phip-stat |
phip, tqdm, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/phipack |
shpc-registry automated BioContainers addition for phipack |
Phi, Profile |
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GITHUB
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quay.io/biocontainers/phirbo |
shpc-registry automated BioContainers addition for phirbo |
phirbo, phirbo.py, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/phispy |
shpc-registry automated BioContainers addition for phispy |
PhiSpy.py, compare_predictions_to_phages.py, make_training_sets.py, mark_prophage_features.py, plot_stats.py, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
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quay.io/biocontainers/phist |
singularity registry hpc automated addition for phist |
kmer-db, phist, phist.py, matcher, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/phizz |
shpc-registry automated BioContainers addition for phizz |
phizz, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/phold |
singularity registry hpc automated addition for phold |
archspec, datasets-cli, foldseek, gawk-5.3.0, gawkbug, genl-ctrl-list, get_gprof, huggingface-cli, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave, nl-link-ifindex2name, nl-link-list, nl-link-name2ifindex, nl-link-release, nl-link-set, nl-link-stats, nl-list-caches, nl-list-sockets, nl-monitor, nl-neigh-add, nl-neigh-delete, nl-neigh-list, nl-neightbl-list, nl-nh-list, nl-pktloc-lookup, nl-qdisc-add, nl-qdisc-delete, nl-qdisc-list, nl-route-add, nl-route-delete, nl-route-get, nl-route-list, nl-rule-list, nl-tctree-list, nl-util-addr, phold, protoc-25.1.0, pyrodigal, pyrodigal-gv, spm_decode, spm_encode, spm_export_vocab, spm_normalize, spm_train, torch_shm_manager, transformers-cli, aria2c, cmtime, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, mckey, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, ucmatose, udaddy, udpong, io_demo, ucx_info |
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GITHUB
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quay.io/biocontainers/phonenumbers |
shpc-registry automated BioContainers addition for phonenumbers |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/phykit |
singularity registry hpc automated addition for phykit |
phykit, pk_al, pk_alignment_length, pk_alignment_length_no_gaps, pk_aln_len, pk_aln_len_no_gaps, pk_alng, pk_bipartition_support_stats, pk_blm, pk_branch_length_multiplier, pk_bss, pk_cb, pk_cc, pk_clan_check, pk_collapse, pk_collapse_branches, pk_column_score, pk_covarying_evolutionary_rates, pk_cover, pk_create_concat, pk_create_concatenation_matrix, pk_cs, pk_degree_of_violation_of_a_molecular_clock, pk_dvmc, pk_evo_rate, pk_evolutionary_rate, pk_faidx, pk_gc, pk_gc_content, pk_ge, pk_get_entry, pk_hidden_paralogy_check, pk_ibs, pk_il, pk_internal_branch_stats, pk_internode_labeler, pk_is_monophyletic, pk_labels, pk_last_common_ancestor_subtree, pk_lb_score, pk_lbs, pk_lca_subtree, pk_long_branch_score, pk_monophyly_check, pk_nearest_neighbor_interchange, pk_nni, pk_p2n, pk_pairwise_id, pk_pairwise_identity, pk_pal2nal, pk_parsimony_informative_sites, pk_patristic_distances, pk_pd, pk_pi, pk_pis, pk_polyt, pk_polyt_test, pk_polytomy_test, pk_print, pk_print_tree, pk_prune, pk_prune_tree, pk_pt, pk_ptt, pk_rcv, pk_rel_comp_var, pk_relative_composition_variability, pk_rename_fasta, pk_rename_fasta_entries, pk_rename_tips, pk_rename_tree, pk_rename_tree_tips, pk_rf, pk_rf_dist, pk_rf_distance, pk_robinson_foulds_distance, pk_root, pk_root_tree, pk_rt, pk_sat, pk_saturation, pk_sop, pk_sops, pk_spurious_seq, pk_spurious_sequence, pk_ss, pk_sum_of_pairs_score, pk_t2t, pk_t2t_dist, pk_t2t_nd, pk_t2t_node_dist, pk_tbs, pk_terminal_branch_stats, pk_thread_dna, pk_tip_labels, pk_tip_to_tip_distance, pk_tip_to_tip_node_distance, pk_tl, pk_tness, pk_tor, pk_total_tree_length, pk_toverr, pk_tree_labels, pk_tree_len, pk_treeness, pk_treeness_over_rcv, pk_variable_sites, pk_vs, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/phylics |
shpc-registry automated BioContainers addition for phylics |
iptest3, iptest, ipython3, ipython, numba, pycc, natsort, pygmentize, f2py3.8, opj_compress |
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GITHUB
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quay.io/biocontainers/phylip |
shpc-registry automated BioContainers addition for phylip |
DrawGram.jar, DrawTree.jar, clique, consense, contml, contrast, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, dollop, dolmove, dolpenny, drawgram, drawgram_gui, drawtree, drawtree_gui, fitch, gendist, kitsch, mix, move, neighbor, pars, penny, phylip, proml, promlk, protdist, protpars, restdist, restml, retree, seqboot, treedist, factor, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj |
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GITHUB
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quay.io/biocontainers/phyloacc |
singularity registry hpc automated addition for phyloacc |
PhyloAcc-GT, PhyloAcc-ST, phyloacc.py, phyloacc_post.py, tjbench, plac_runner.py, yte, docutils, pulptest, cbc, clp, snakemake, snakemake-bash-completion, tabulate, jupyter-trust, jupyter, jupyter-migrate, jupyter-troubleshoot, rst2html4.py, jsonschema, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py, rst2xetex.py, rst2xml.py |
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GITHUB
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quay.io/biocontainers/phyloaln |
singularity registry hpc automated addition for phyloaln |
PhyloAln, alignseq.pl, connect.pl, merge_seqs.py, revertransseq.pl, root_tree.py, select_seqs.py, test_effect.py, transseq.pl, trim_matrix.py, bsmp2info, fsa2xml, gbf2info, just-top-hits, systematic-mutations, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, TMalign, make_pscores.pl, poa, gawk-5.3.0, RNAmultifold, gawkbug, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists |
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GITHUB
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quay.io/biocontainers/phylobayes-mpi |
shpc-registry automated BioContainers addition for phylobayes-mpi |
bpcomp, cvrep, io_demo, pb_mpi, readpb_mpi, tracecomp, ucx_info, ucx_perftest, ucx_read_profile, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun |
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GITHUB
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quay.io/biocontainers/phylocsf |
shpc-registry automated BioContainers addition for phylocsf |
PhyloCSF, PhyloCSF.Linux.x86_64, ocaml, ocamlc, ocamlc.byte, ocamlc.opt, ocamlcmt, ocamlcp, ocamlcp.byte, ocamlcp.opt, ocamldebug, ocamldep, ocamldep.byte, ocamldep.opt, ocamldoc, ocamldoc.opt, ocamllex, ocamllex.byte, ocamllex.opt, ocamlmklib, ocamlmklib.byte, ocamlmklib.opt, ocamlmktop, ocamlmktop.byte, ocamlmktop.opt, ocamlobjinfo, ocamlobjinfo.byte, ocamlobjinfo.opt, ocamlopt, ocamlopt.byte, ocamlopt.opt, ocamloptp, ocamloptp.byte, ocamloptp.opt, ocamlprof, ocamlprof.byte, ocamlprof.opt, ocamlrun, ocamlyacc, c89, c99 |
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GITHUB
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quay.io/biocontainers/phylocsfpp |
shpc-registry automated BioContainers addition for phylocsfpp |
phylocsf++ |
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GITHUB
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quay.io/biocontainers/phylodeep_data_bdss |
singularity registry hpc automated addition for phylodeep_data_bdss |
bdss_ci_paths, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/phylodm |
shpc-registry automated BioContainers addition for phylodm |
f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/phylofisher |
singularity registry hpc automated addition for phylofisher |
aa_comp_calculator.py, aa_recoder.py, apply_to_db.py, astral, astral_runner.py, attr, backup_restoration.py, balsam, bipartition_examiner.py, bmge.yaml, build_database.py, config.py, dist_est, divvier.yaml, dumpsexp, explore_database.py, fast_site_remover.py, fast_taxa_remover.py, fisher.py, forest.py, genetic_code_examiner.py, getfattr, gfmix.yaml, gfmix_mammal.smk, gfmix_runner.py, gpg-error, gpgrt-config, heterotachy.py, hmac256, informant.py, install_deps.py, jackd, lame, libgcrypt-config, lprodump, lrelease-pro, lupdate-pro, mafft.yaml, mammal.yaml, mammal_modeler.py, matplotlib, matrix_constructor.py, meshdebug, mpg123, mpg123-id3dump, mpg123-strip, mpicalc, orc-bugreport, orcc, out123, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, prep_final_dataset.py, prequal.yaml, pulseaudio, purge.py, qmlformat, qmltime, qmltyperegistrar, qpaeq, random_resampler.py, raxml.yaml, rtc_binner.py, select_orthologs.py, select_taxa.py, setfattr, sgt_constructor.py, sgt_constructor.smk, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, taxon_collapser.py, tracegen, trimal.yaml, working_dataset_constructor.py, yat2m, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set, sndfile-play, sndfile-salvage, docutils, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div, cd-hit-div.pl, cd-hit-est-2d, cd-hit-para.pl |
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GITHUB
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quay.io/biocontainers/phyloflash |
shpc-registry automated BioContainers addition for phyloflash |
ENA_phyloFlash.pl, emirge.py, emirge_amplicon.py, emirge_makedb.py, emirge_rename_fasta.py, phyloFlash.pl, phyloFlash_barplot.R, phyloFlash_compare.pl, phyloFlash_fastgFishing.pl, phyloFlash_heatmap.R, phyloFlash_makedb.pl, phyloFlash_plotscript_svg.pl, kmutate.sh, runhmm.sh, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, sketchblacklist2.sh |
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GITHUB
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quay.io/biocontainers/phylogenetics |
shpc-registry automated BioContainers addition for phylogenetics |
jupyter-console, jupyter-qtconsole, g-ir-doc-tool, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect |
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GITHUB
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quay.io/biocontainers/phylogenize |
singularity registry hpc automated addition for phylogenize |
git2, vsearch, hb-info, tjbench, glpsol, pandoc |
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GITHUB
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quay.io/biocontainers/phylommand |
shpc-registry automated BioContainers addition for phylommand |
contree, pairalign, treeator, treebender, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/phylopandas |
shpc-registry automated BioContainers addition for phylopandas |
sumlabels.py, sumtrees.py, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config |
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GITHUB
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quay.io/biocontainers/phylophlan |
shpc-registry automated BioContainers addition for phylophlan |
phylophlan, phylophlan_draw_metagenomic, phylophlan_get_reference, phylophlan_metagenomic, phylophlan_setup_database, phylophlan_strain_finder, phylophlan_write_config_file, phylophlan_write_default_configs.sh, readal, statal, trimal, iqtree, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3 |
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GITHUB
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quay.io/biocontainers/phylorank |
shpc-registry automated BioContainers addition for phylorank |
phylorank, dendropy-format, sumlabels.py, sumtrees.py, futurize, pasteurize, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9 |
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GITHUB
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quay.io/biocontainers/phylornn |
singularity registry hpc automated addition for phylornn |
phyml, phyml-mpi, phytime, seq-gen, import_pb_to_tensorboard, h5delete, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun, shmemcc, shmemfort, shmemrun, estimator_ckpt_converter, dendropy-format, google-oauthlib-tool, sumlabels.py, tf_upgrade_v2, aec, sumtrees.py, aggregate_profile.pl, profile2mat.pl, tflite_convert |
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GITHUB
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quay.io/biocontainers/phylotoast |
shpc-registry automated BioContainers addition for phylotoast |
LDA.py, LDA_bubble.py, PCoA.py, PCoA_bubble.py, assign_taxonomy_by_blast_result.py, barcode_filter.py, biom_relative_abundance.py, condense_workflow.py, core_overlap_plot.py, diversity.py, extract_shared_or_unique_otuids.py, filter_biom.py, filter_keep_otus_by_sample.py, filter_rep_set.py, iTol.py, iptest2, ipython2, merge_otu_results.py, multi_parallel_pick_otus.py, multi_qsub.py, network_plots_gephi.py, otu_condense.py, otu_to_tax_name.py, pick_otus_condense.py, primer_average.py, prune_otus.py, pyqi, restrict_repset.py, split_sequence_data.py, transform_biom.py, transpose_biom.py, biom, sample, easy_install-2.7, iptest, ipython, natsort, qhelpconverter, pygmentize, pylupdate5, pyrcc5 |
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GITHUB
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quay.io/biocontainers/phylovega |
shpc-registry automated BioContainers addition for phylovega |
jupyter-console, jupyter-qtconsole, phylovega, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run, iptest3, sumlabels.py |
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GITHUB
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quay.io/biocontainers/phyluce |
shpc-registry automated BioContainers addition for phyluce |
Gblocks, GenomeAnalysisTK, ParaFly, PtR, SAM_nameSorted_to_uniq_count_stats.pl, Trinity, TrinityStats.pl, abundance_estimates_to_matrix.pl, align_and_estimate_abundance.pl, analyze_blastPlus_topHit_coverage.pl, bowtie_PE_separate_then_join.pl, cattrees.py, collectl, colmux, dipspades.py, fasta_tool, fastool, filter_fasta_by_rsem_values.pl, gatk3, gatk3-register, gawk-5.0.1, illumiprocessor, insilico_read_normalization.pl, itero, lastz, lastz_32, lastz_D, long_branch_symmdiff.py, phyluce_align_add_missing_data_designators, phyluce_align_convert_degen_bases, phyluce_align_convert_one_align_to_another, phyluce_align_explode_alignments, phyluce_align_extract_taxa_from_alignments, phyluce_align_extract_taxon_fasta_from_alignments, phyluce_align_filter_alignments, phyluce_align_filter_characters_from_alignments, phyluce_align_format_concatenated_phylip_for_paml, phyluce_align_format_nexus_files_for_mrbayes, phyluce_align_format_nexus_files_for_raxml, phyluce_align_get_align_summary_data, phyluce_align_get_aligns_partitioned_by_cluster, phyluce_align_get_bed_from_lastz, phyluce_align_get_gblocks_trimmed_alignments_from_untrimmed, phyluce_align_get_incomplete_matrix_estimates, phyluce_align_get_indels_from_alignments, phyluce_align_get_informative_sites, phyluce_align_get_only_loci_with_min_taxa, phyluce_align_get_ry_recoded_alignments, phyluce_align_get_smilogram_from_alignments, phyluce_align_get_taxon_locus_counts_in_alignments, phyluce_align_get_trimal_trimmed_alignments_from_untrimmed, phyluce_align_get_trimmed_alignments_from_untrimmed, phyluce_align_move_align_by_conf_file, phyluce_align_output_list_of_taxon_counts, phyluce_align_parallel_sate, phyluce_align_randomly_sample_and_concatenate, phyluce_align_reduce_alignments_with_raxml, phyluce_align_remove_empty_taxa, phyluce_align_remove_locus_name_from_nexus_lines, phyluce_align_screen_alignments_for_problems, phyluce_align_seqcap_align, phyluce_align_split_concat_nexus_to_loci, phyluce_assembly_assemblo_abyss, phyluce_assembly_assemblo_spades, phyluce_assembly_assemblo_trinity, phyluce_assembly_assemblo_velvet, phyluce_assembly_copy_trinity_symlinks, phyluce_assembly_explode_get_fastas_file, phyluce_assembly_extract_contigs_to_barcodes, phyluce_assembly_filter_seqs_from_fastas, phyluce_assembly_get_bed_for_genome_enabled_taxon, phyluce_assembly_get_fasta_lengths, phyluce_assembly_get_fastas_from_match_counts, phyluce_assembly_get_fastq_lengths, phyluce_assembly_get_match_counts, phyluce_assembly_get_trinity_coverage, phyluce_assembly_get_trinity_coverage_for_uce_loci, phyluce_assembly_match_contigs_to_barcodes, phyluce_assembly_match_contigs_to_probes, phyluce_assembly_parse_trinity_coverage_for_uce_loci_log, phyluce_assembly_parse_trinity_coverage_log, phyluce_assembly_screen_probes_for_dupes, phyluce_genetrees_generate_multilocus_bootstrap_count, phyluce_genetrees_get_mean_bootrep_support, phyluce_genetrees_get_tree_counts, phyluce_genetrees_locus_stats, phyluce_genetrees_order_gene_tree_file, phyluce_genetrees_phybase, phyluce_genetrees_reformat_raxml_output, phyluce_genetrees_reformat_trees, phyluce_genetrees_rename_tree_leaves, phyluce_genetrees_run_raxml_bootstraps, phyluce_genetrees_run_raxml_genetrees, phyluce_genetrees_run_raxml_multilocus_bootstraps, phyluce_genetrees_sort_multilocus_bootstraps, phyluce_genetrees_split_models_from_genetrees, phyluce_ncbi_chunk_fasta_for_ncbi, phyluce_ncbi_example-prep.conf, phyluce_ncbi_prep_uce_align_files_for_ncbi, phyluce_ncbi_prep_uce_align_files_for_ncbi_targeted_locus_db, phyluce_ncbi_prep_uce_fasta_files_for_ncbi, phyluce_probe_easy_lastz, phyluce_probe_get_clusters_from_bed, phyluce_probe_get_clusters_from_taxa, phyluce_probe_get_genome_sequences_from_bed, phyluce_probe_get_locus_bed_from_lastz_files, phyluce_probe_get_multi_fasta_table, phyluce_probe_get_multi_merge_table, phyluce_probe_get_probe_bed_from_lastz_files, phyluce_probe_get_screened_loci_by_proximity, phyluce_probe_get_subsets_of_tiled_probes, phyluce_probe_get_tiled_probe_from_multiple_inputs, phyluce_probe_get_tiled_probes, phyluce_probe_query_multi_fasta_table, phyluce_probe_query_multi_merge_table, phyluce_probe_reconstruct_uce_from_probe, phyluce_probe_remove_duplicate_hits_from_probes_using_lastz, phyluce_probe_remove_overlapping_probes_given_config, phyluce_probe_run_multiple_lastzs_sqlite, phyluce_probe_slice_sequence_from_genomes, phyluce_probe_strip_masked_loci_from_set, phyluce_snp_bwa_align, phyluce_snp_bwa_multiple_align, phyluce_snp_convert_vcf_to_snapp, phyluce_snp_convert_vcf_to_structure, phyluce_snp_find_snps_in_bed_interval, phyluce_snp_get_dbsnp_freq_stats, phyluce_snp_get_dbsnp_variability_for_all_uces, phyluce_snp_get_from_uce_alignments, phyluce_snp_phase_uces, phyluce_snp_prep_interval_list_file_for_picard, phyluce_snp_screen_phased_alignments, phyluce_snp_screen_vcf_files, phyluce_snp_summarize_vcf_file, phyluce_utilities_cleanup_trinity, phyluce_utilities_combine_reads, phyluce_utilities_filter_bed_by_fasta, phyluce_utilities_get_bed_from_fasta, phyluce_utilities_merge_multiple_gzip_files, phyluce_utilities_merge_next_seq_gzip_files, phyluce_utilities_replace_many_links, phyluce_utilities_sample_reads_from_files, phyluce_utilities_unmix_fasta_reads, retrieve_sequences_from_fasta.pl, run_DE_analysis.pl, run_DE_analysis_from_samples_file.pl, run_RSEM_from_samples_file.pl, run_Trinity_edgeR_pipeline.pl, run_Trinity_from_samples_file.pl, slclust, spades-dipspades-core, strict_consensus_merge.py, readal, statal, trimal, abyss-bloom-dist.mk.Makefile, abyss-pe.Makefile, ABYSS, ABYSS-P, AdjList, Consensus, DAssembler |
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GITHUB
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quay.io/biocontainers/phyml |
shpc-registry automated BioContainers addition for phyml |
phyml, phyml-mpi, phyrex, phytime, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun |
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GITHUB
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quay.io/biocontainers/phynder |
singularity registry hpc automated addition for phynder |
annot-tsv, phynder, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/phynteny |
singularity registry hpc automated addition for phynteny |
compute_confidence, generate_training_data, install_models, matplotlib, phynteny, train_model, import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, aec, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, markdown_py, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, protoc |
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GITHUB
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quay.io/biocontainers/phyphy |
shpc-registry automated BioContainers addition for phyphy |
ete3, compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util |
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GITHUB
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quay.io/biocontainers/physher |
singularity registry hpc automated addition for physher |
physher |
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GITHUB
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quay.io/biocontainers/physiofit4galaxy |
singularity registry hpc automated addition for physiofit4galaxy |
2to3-3.11, f2py3.11, idle3.11, physiofit4galaxy, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/physlr |
singularity registry hpc automated addition for physlr |
ntcard, nthits, nthll, physlr, pypy, pypy3, pypy3.7, gdbm_dump, gdbm_load, gdbmtool, pigz, unpigz, tqdm, f2py3.7, python3.7, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/phytest |
singularity registry hpc automated addition for phytest |
phytest, treetime, markdown-it, py.test, pytest, tjbench, pygmentize, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc, python3.1 |
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GITHUB
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quay.io/biocontainers/phyx |
shpc-registry automated BioContainers addition for phyx |
pxaa2cdn, pxbdfit, pxbdsim, pxboot, pxbp, pxcat, pxclsq, pxcltr, pxcolt, pxcomp, pxconsq, pxcontrates, pxfqfilt, pxlog, pxlssq, pxlstr, pxmono, pxmrca, pxmrcacut, pxmrcaname, pxnj, pxnw, pxrecode, pxrevcomp, pxrls, pxrlt, pxrmk, pxrms, pxrmt, pxrr, pxs2fa, pxs2nex, pxs2phy, pxseqgen, pxssort, pxsstat, pxstrec, pxsw, pxt2new, pxt2nex, pxtcol, pxtcomb, pxtgen, pxtlate, pxtrt, pxtscale, pxupgma, pxvcf2fa, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/pia |
singularity registry hpc automated addition for pia |
jwebserver, pia, jpackage, hb-info, cups-config, ippeveprinter, ipptool, tjbench, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb, jinfo |
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GITHUB
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quay.io/biocontainers/piawka |
singularity registry hpc automated addition for piawka |
aggregate_regions.awk, bash, bashbug, mawk, piawka, piawka_par.sh, summarize_blks.awk, annot-tsv, parsort, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh, env_parallel.pdksh, env_parallel.sh, env_parallel.tcsh, env_parallel.zsh, niceload, parcat, parset, sem, sql, parallel, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/picard-slim |
shpc-registry automated BioContainers addition for picard-slim |
picard, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell |
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GITHUB
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quay.io/biocontainers/picard |
shpc-registry automated BioContainers addition for picard |
picard |
|
GITHUB
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quay.io/biocontainers/picopore |
shpc-registry automated BioContainers addition for picopore |
picopore, picopore-realtime, picopore-rename, picopore-test, watchmedo, futurize, pasteurize, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
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GITHUB
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quay.io/biocontainers/picrust |
shpc-registry automated BioContainers addition for picrust |
|
|
GITHUB
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quay.io/biocontainers/picrust2 |
shpc-registry automated BioContainers addition for picrust2 |
add_descriptions.py, convert_table.py, epa-ng, gappa, hmmc2, hmmerfm-exactmatch, hsp.py, metagenome_pipeline.py, pathway_pipeline.py, picrust2_pipeline.py, place_seqs.py, print_picrust2_config.py, run-sepp.sh, run_abundance.py, run_sepp.py, run_tipp.py, run_tipp_tool.py, run_upp.py, seppJsonMerger.jar, shuffle_predictions.py, split_sequences.py, coverage, guppy, pplacer, biom, dendropy-format, sumlabels.py, sumtrees.py, py.test, pytest, glpsol |
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GITHUB
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quay.io/biocontainers/piemmer |
shpc-registry automated BioContainers addition for piemmer |
doesitcache, iptest3, iptest, ipython3, ipython, cygdb, cython, cythonize, py.test, pytest |
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GITHUB
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quay.io/biocontainers/pifcosm |
shpc-registry automated BioContainers addition for pifcosm |
Gblocks, PifCoSm.pl, RogueNaRok, RogueNaRok-parallel, contree, pairalign, rnr-lsi, rnr-mast, rnr-prune, rnr-tii, treeator, treebender, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, FastTree-2.1.10.c, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl |
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GITHUB
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quay.io/biocontainers/pigz |
shpc-registry automated BioContainers addition for pigz |
pigz, unpigz |
|
GITHUB
|
quay.io/biocontainers/pileometh |
shpc-registry automated BioContainers addition for pileometh |
PileOMeth |
|
GITHUB
|
quay.io/biocontainers/piler-cr |
shpc-registry automated BioContainers addition for piler-cr |
pilercr |
|
GITHUB
|
quay.io/biocontainers/piler |
shpc-registry automated BioContainers addition for piler |
|
|
GITHUB
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quay.io/biocontainers/pileuppy |
shpc-registry automated BioContainers addition for pileuppy |
pileuppy, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/pilon |
shpc-registry automated BioContainers addition for pilon |
pilon, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/pin_hic |
singularity registry hpc automated addition for pin_hic |
pin_hic, pin_hic_it |
|
GITHUB
|
quay.io/biocontainers/pindel |
shpc-registry automated BioContainers addition for pindel |
pindel, pindel2vcf, pindel2vcf4tcga, sam2pindel, htsfile, bgzip, tabix |
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GITHUB
|
quay.io/biocontainers/pipelign |
shpc-registry automated BioContainers addition for pipelign |
gb2fas, pipelign, iqtree, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div |
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GITHUB
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quay.io/biocontainers/piper |
shpc-registry automated BioContainers addition for piper |
py.test, pytest, jsonschema, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/pipits |
shpc-registry automated BioContainers addition for pipits |
AbundanceStats, AlignmentTools, Clustering, FrameBot, ITSx, KmerFilter, ProbeMatch, ReadSeq, SeqFilters, SequenceMatch, classifier, fasta_clipping_histogram.pl, fasta_formatter, fasta_nucleotide_changer, fastq_masker, fastq_quality_boxplot_graph.sh, fastq_quality_converter, fastq_quality_filter, fastq_quality_trimmer, fastq_to_fasta, fastx_artifacts_filter, fastx_barcode_splitter.pl, fastx_clipper, fastx_collapser, fastx_nucleotide_distribution_graph.sh, fastx_nucleotide_distribution_line_graph.sh, fastx_quality_stats, fastx_renamer, fastx_reverse_complement, fastx_trimmer, fastx_uncollapser, hmmgs, pipits_funguild.py, pipits_funits, pipits_getsamplelistfromfasta, pipits_phylotype_biom, pipits_process, pipits_reformatAssignedTaxonomy, pipits_rereplicate, pipits_retrain_rdp, pipits_uc2otutable, pispino_createreadpairslist, pispino_seqprep, nosetests-3.9, seqkit, biom, vsearch, nosetests, cygdb, cython, cythonize, hmmpgmd_shard, easel |
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GITHUB
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quay.io/biocontainers/pipmir |
shpc-registry automated BioContainers addition for pipmir |
PIPmiR, RNAfold, Kinfold, RNALfold, RNAaliduplex, RNAalifold, RNAcofold, RNAdistance, RNAduplex, RNAeval, RNAforester |
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GITHUB
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quay.io/biocontainers/piranha-polio |
singularity registry hpc automated addition for piranha-polio |
check_compression, compress_fast5, consensus.smk, demux_fast5, fast5_subset, hdf2tf.py, import_pb_to_tensorboard, medaka, medaka_consensus, medaka_counts, medaka_data_path, medaka_haploid_variant, medaka_version_report, mini_align, multi_to_single_fast5, piranha, piranha_preprocessing.smk, piranha_vp1.smk, piranha_wg_2tile.smk, single_to_multi_fast5, snipit, snipit.smk, snp_functions.py, variation.smk, aec, plac_runner.py, yte, minimap2.py, estimator_ckpt_converter, mako-render, docutils, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tar, gff2gff.py, pulptest, tf_upgrade_v2, cbc, clp, tflite_convert, saved_model_cli, toco, toco_from_protos |
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GITHUB
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quay.io/biocontainers/piranha |
shpc-registry automated BioContainers addition for piranha |
Piranha, Simulate, bamtools-2.4.1, bamtools |
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GITHUB
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quay.io/biocontainers/pirate |
shpc-registry automated BioContainers addition for pirate |
PIRATE, PIRATE_to_Rtab.pl, PIRATE_to_roary.pl, analyse_blast_outputs.pl, analyse_loci_list.pl, annotate_treeWAS_output.pl, convert_to_distmat.pl, convert_to_treeWAS.pl, create_pangenome_alignment_aa.pl, pangenome_variants_to_treeWAS.pl, paralogs_to_Rtab.pl, select_representative, subsample_outputs.pl, subset_alignments.pl, unique_sequences.pl, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray, mcxassemble |
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GITHUB
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quay.io/biocontainers/piret |
shpc-registry automated BioContainers addition for piret |
detectionCall, exactSNP, featureCounts, flattenGTF, hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_simulate_reads.py, hisatgenotype.py, hisatgenotype_build_genome.py, hisatgenotype_extract_reads.py, hisatgenotype_extract_vars.py, hisatgenotype_hla_cyp.py, hisatgenotype_locus.py, luigi, luigi-deps, luigi-deps-tree, luigi-grep, luigid, piret, prepDE.py, propmapped, qualityScores, removeDup, repair, stringtie, subindel, subjunc, sublong, subread-align, subread-buildindex, subread-fullscan, txUnique, bamtools, jp.py, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py |
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GITHUB
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quay.io/biocontainers/pirs |
shpc-registry automated BioContainers addition for pirs |
2bwt-builder, AUTHORS, COPYING, NEWS, alignment_stator, baseCalling_Matrix_analyzer, baseCalling_Matrix_calculator, baseCalling_Matrix_merger, gc_coverage_bias, gc_coverage_bias_plot, indelstat_sam_bam, pirs, soap, soap.coverage, chrpath, gnuplot, basenc, xkbcli, b2sum, base32, base64, basename, cat, chcon |
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GITHUB
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quay.io/biocontainers/piscem-infer |
singularity registry hpc automated addition for piscem-infer |
piscem-infer |
|
GITHUB
|
quay.io/biocontainers/piscem |
singularity registry hpc automated addition for piscem |
piscem |
|
GITHUB
|
quay.io/biocontainers/pisces |
shpc-registry automated BioContainers addition for pisces |
pisces, pisces_vqr |
|
GITHUB
|
quay.io/biocontainers/pispino |
shpc-registry automated BioContainers addition for pispino |
fasta_clipping_histogram.pl, fasta_formatter, fasta_nucleotide_changer, fastq_masker, fastq_quality_boxplot_graph.sh, fastq_quality_converter, fastq_quality_filter, fastq_quality_trimmer, fastq_to_fasta, fastx_artifacts_filter, fastx_barcode_splitter.pl, fastx_clipper, fastx_collapser, fastx_nucleotide_distribution_graph.sh, fastx_nucleotide_distribution_line_graph.sh, fastx_quality_stats, fastx_renamer, fastx_reverse_complement, fastx_trimmer, fastx_uncollapser, pispino_createreadpairslist, pispino_seqprep, vsearch, nosetests, cygdb, cython, cythonize, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/pixelator |
singularity registry hpc automated addition for pixelator |
cmtime, elastipubsub5, h5fuse.sh, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, io_demo, mckey, mqtt5_app, mqtt5_canary, mqtt5canary, pixelator, protoc-23.4.0, pysemver, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, ucmatose, ucx_info, ucx_perftest, ucx_read_profile, udaddy, udpong, umi_tools, yapf, yapf-diff, yappi, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, pyfastx, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, fastp, h5delete, orc-contents, orc-metadata, orc-statistics, sha256_profile, igraph, scanpy, cutadapt, gflags_completions.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir |
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GITHUB
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quay.io/biocontainers/pizzly |
shpc-registry automated BioContainers addition for pizzly |
pizzly, pizzly_flatten_json.py, pizzly_flatten_json.py.bak, pizzly_get_fragment_length.py, pizzly_get_fragment_length.py.bak, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, h5clear, h5format_convert |
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GITHUB
|
quay.io/biocontainers/pkiss |
shpc-registry automated BioContainers addition for pkiss |
addRNAoptions.pl, gapc, pKiss, pKiss_enforce, pKiss_enforce_window, pKiss_eval, pKiss_local, pKiss_local_window, pKiss_mfe, pKiss_mfe_window, pKiss_probs, pKiss_probs_window, pKiss_shapes, pKiss_shapes_window, pKiss_subopt, pKiss_subopt_window, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/planemo |
shpc-registry automated BioContainers addition for planemo |
bagit.py, bioblend-galaxy-tests, black, black-primer, blackd, cheetah, cheetah-analyze, cheetah-compile, galaxy-tool-test, galaxy-wait, get-tool-list, gxwf-abstract-export, gxwf-lint, gxwf-to-format2, gxwf-to-native, gxwf-viz, install_tool_deps, mulled-build, mulled-build-channel, mulled-build-files, mulled-build-tool, mulled-list, mulled-search, mulled-update-singularity-containers, planemo, prov-compare, prov-convert, run-data-managers, setup-data-libraries, shed-tools, virtualenv, workflow-install, workflow-to-tools, cwltool, conda-env, cph, schema-salad-doc, schema-salad-tool, asadmin, bundle_image, cfadmin, cq, csv2rdf |
|
GITHUB
|
quay.io/biocontainers/plannotate |
shpc-registry automated BioContainers addition for plannotate |
EukHighConfidenceFilter, base58, covels-SE, coves-SE, csv-import, elasticurl, elasticurl_cpp, elastipubsub, eufindtRNA, fasta2gsi, jupyter-dejavu, jupyter-execute, orc-memory, orc-scan, plannotate, rg, send2trash, sstofa, streamlit, streamlit.cmd, tRNAscan-SE, tRNAscan-SE.conf, timezone-dump, trnascan-1.4, watchmedo, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin |
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GITHUB
|
quay.io/biocontainers/plant_tribes_assembly_post_processor |
shpc-registry automated BioContainers addition for plant_tribes_assembly_post_processor |
AssemblyPostProcessor, ESTScan, TransDecoder.LongOrfs, TransDecoder.Predict, cap3, cdna_alignment_orf_to_genome_orf.pl, compute_base_probs.pl, exclude_similar_proteins.pl, fasta_prot_checker.pl, fetch, ffindex_resume.pl, formcon, gene_list_to_gff.pl, genometools-config, get_FL_accs.pl, get_longest_ORF_per_transcript.pl, get_top_longest_fasta_entries.pl, gff3_file_to_bed.pl, gff3_file_to_proteins.pl, gff3_gene_to_gtf_format.pl, gt, gtf_genome_to_cdna_fasta.pl, gtf_to_alignment_gff3.pl, gtf_to_bed.pl, indexer, netfetch, nr_ORFs_gff3.pl, pfam_runner.pl, refine_gff3_group_iso_strip_utrs.pl, refine_hexamer_scores.pl, remove_eclipsed_ORFs.pl, score_CDS_likelihood_all_6_frames.pl, select_best_ORFs_per_transcript.pl, seq_n_baseprobs_to_loglikelihood_vals.pl, start_codon_refinement.pl, train_start_PWM.pl, uri_unescape.pl, readal, statal, trimal, db_convert, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi, linsi |
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GITHUB
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quay.io/biocontainers/plant_tribes_gene_family_aligner |
shpc-registry automated BioContainers addition for plant_tribes_gene_family_aligner |
GeneFamilyAligner, fakealigner, faketree, fasttreeMP, hmmeralign, hmmerbuild, opal.jar, padaligner, randtree, raxml, raxmlp, run_pasta.py, run_pasta_gui.py, run_seqtools.py, readal, statal, trimal, prank, dendropy-format, muscle, fasttree, sumlabels.py, sumtrees.py, clustalw2 |
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GITHUB
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quay.io/biocontainers/plant_tribes_gene_family_classifier |
shpc-registry automated BioContainers addition for plant_tribes_gene_family_classifier |
GeneFamilyClassifier, CA.pm, cacert.pem, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras, pm-collect, readme.pdf |
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GITHUB
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quay.io/biocontainers/plant_tribes_gene_family_integrator |
shpc-registry automated BioContainers addition for plant_tribes_gene_family_integrator |
GeneFamilyIntegrator, perl5.32.0, streamzip |
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GITHUB
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quay.io/biocontainers/plant_tribes_gene_family_phylogeny_builder |
shpc-registry automated BioContainers addition for plant_tribes_gene_family_phylogeny_builder |
GeneFamilyPhylogenyBuilder, raxmlHPC, raxmlHPC-AVX2, raxmlHPC-PTHREADS, raxmlHPC-PTHREADS-AVX2, raxmlHPC-PTHREADS-SSE3, raxmlHPC-SSE3, FastTree-2.1.10.c, FastTreeMP, FastTree, fasttree |
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GITHUB
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quay.io/biocontainers/plant_tribes_kaks_analysis |
shpc-registry automated BioContainers addition for plant_tribes_kaks_analysis |
EMMIX, KaKsAnalysis, bioruby, br_biofetch.rb, br_bioflat.rb, br_biogetseq.rb, br_pmfetch.rb, bundle, bundler, crb-blast, racc, racc2y, y2racc, gdbm_dump, gdbm_load, gdbmtool, erb, gem, irb, rake, rdoc, ri, ruby |
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GITHUB
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quay.io/biocontainers/plantcv |
shpc-registry automated BioContainers addition for plantcv |
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GITHUB
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quay.io/biocontainers/plasclass |
shpc-registry automated BioContainers addition for plasclass |
classify_fasta.py, train.py, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/plascope |
shpc-registry automated BioContainers addition for plascope |
centrifuge, centrifuge-BuildSharedSequence.pl, centrifuge-RemoveEmptySequence.pl, centrifuge-RemoveN.pl, centrifuge-build, centrifuge-build-bin, centrifuge-class, centrifuge-compress.pl, centrifuge-download, centrifuge-inspect, centrifuge-inspect-bin, centrifuge-kreport, centrifuge-sort-nt.pl, centrifuge_evaluate.py, centrifuge_simulate_reads.py, plaScope.sh, cds-mapping-stats, cds-subgraphs, mag-improve, spades-convert-bin-to-fasta, spades-gsimplifier, spades-kmer-estimating, spades-read-filter, spaligner, spades-bwa, spades-core |
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GITHUB
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quay.io/biocontainers/plasflow |
shpc-registry automated BioContainers addition for plasflow |
PlasFlow.py, enhancer.py, explode.py, gifmaker.py, painter.py, player.py, thresholder.py, viewer.py, pilconvert.py, pildriver.py, pilfile.py |
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GITHUB
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quay.io/biocontainers/plasmidfinder |
shpc-registry automated BioContainers addition for plasmidfinder |
download-db.sh, kma, kma_index, kma_shm, kma_update, plasmidfinder.py, tabulate, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml |
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GITHUB
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quay.io/biocontainers/plasmidhawk |
shpc-registry automated BioContainers addition for plasmidhawk |
delta2vcf, plasmidhawk, plaster, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot, nucmer, promer, repeat-match, show-aligns |
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GITHUB
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quay.io/biocontainers/plasmidid |
shpc-registry automated BioContainers addition for plasmidid |
adapt_filter_coverage.sh, blast_align.sh, blast_to_bed.sh, blast_to_complete.sh, blast_to_link.sh, bowtie_mapper.sh, build_karyotype.sh, calculate_seqlen.sh, cdhit_cluster.sh, check_dependencies.sh, check_mandatory_files.sh, coordinate_adapter.sh, download_plasmid_database.py, draw_circos_images.sh, filter_fasta.sh, get_coverage.sh, gff_to_bed.sh, mash_screener.sh, mashclust.py, ncbi_database_fetcher.sh, plasmidID, process_cluster_output.sh, prokka_annotation.sh, quality_trim.sh, rename_from_fasta.sh, sam_to_bam.sh, spades_assembly.sh, summary_report_pid.py, summary_table.sh, tbl2asn-test, fix-sqn-date, circos, circos.exe, compile.bat, compile.make, faketime, gddiag, list.modules, real-tbl2asn, test.modules |
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GITHUB
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quay.io/biocontainers/plasmidtron |
shpc-registry automated BioContainers addition for plasmidtron |
plasmidtron, plotkmers, kmc, kmc_dump, kmc_tools, fastaq, spades-bwa, spades-core, spades-corrector-core, spades-gbuilder, spades-gmapper, spades-hammer |
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GITHUB
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quay.io/biocontainers/plasnet |
singularity registry hpc automated addition for plasnet |
plasnet, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/plass |
shpc-registry automated BioContainers addition for plass |
plass, gawk-5.1.0, awk, gawk, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/plassembler |
singularity registry hpc automated addition for plassembler |
NanoFilt, bam.py, case_one.py, case_one_kmer.py, case_three.py, case_three_kmer.py, cleanup.py, concat.py, coronaspades.py, deduplicate.py, depth.py, double_mapping.py, extract.py, flye, flye-minimap2, flye-modules, flye-samtools, input_commands.py, install_database.py, log.py, mapping.py, metaplasmidspades.py, metaviralspades.py, miniasm, minidot, plassembler.py, qc.py, rnaviralspades.py, run_flye.py, run_mash.py, run_unicycler.py, unicycler, version.py, fastp, seqkit, racon, rampler, racon_wrapper, cds-mapping-stats, cds-subgraphs, mag-improve, spades-convert-bin-to-fasta, spades-gsimplifier, spades-kmer-estimating, spades-read-filter, spaligner, spades-bwa, spades-core, spades-corrector-core, spades-gbuilder, spades-gmapper, spades-hammer, spades-ionhammer, spades-kmercount, spades-truseq-scfcorrection, capnp, capnpc, capnpc-c++ |
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GITHUB
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quay.io/biocontainers/plastedma |
singularity registry hpc automated addition for plastedma |
CDHIT_parser.py, CDHIT_seq_download.py, RNAmultifold, TMalign, UPIMAPI_parser.py, docker_run.py, hmm_process.py, hmm_vali.py, hmmsearch_run.py, make_pscores.pl, plastedma.py, poa, seq_download.py, snakemake_util.py, t_coffee_run.py, clustalo, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb, impala, makemat, megablast, RNAdos, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, AnalyseDists, AnalyseSeqs, RNAlocmin, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div |
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GITHUB
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quay.io/biocontainers/plastid |
shpc-registry automated BioContainers addition for plastid |
counts_in_region, crossmap, cs, fasta_clipping_histogram.pl, fasta_formatter, fasta_nucleotide_changer, fastq_masker, fastq_quality_boxplot_graph.sh, fastq_quality_converter, fastq_quality_filter, fastq_quality_trimmer, fastq_to_fasta, fastx_artifacts_filter, fastx_barcode_splitter.pl, fastx_clipper, fastx_collapser, fastx_nucleotide_distribution_graph.sh, fastx_nucleotide_distribution_line_graph.sh, fastx_quality_stats, fastx_renamer, fastx_reverse_complement, fastx_trimmer, fastx_uncollapser, findjuncs, get_count_vectors, gff_parent_types, make_wiggle, metagene, phase_by_size, psite, reformat_transcripts, slidejuncs, test_table_equality, nosetests-3.9, bowtie, bowtie-build, bowtie-inspect, nosetests, cygdb, cython, cythonize, fonttools, pyftmerge |
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GITHUB
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quay.io/biocontainers/platon |
shpc-registry automated BioContainers addition for platon |
delta2vcf, platon, cmalign, cmbuild, cmcalibrate, cmconvert, cmemit, cmfetch, cmpress, cmscan, cmsearch, cmstat |
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GITHUB
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quay.io/biocontainers/platypus-conquistador |
shpc-registry automated BioContainers addition for platypus-conquistador |
iptest2, ipython2, platypus, iptest, ipython, natsort, qhelpconverter, f2py2, f2py2.7, qwebengine_convert_dict, pygmentize, canbusutil, qgltf |
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GITHUB
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quay.io/biocontainers/platypus-variant |
shpc-registry automated BioContainers addition for platypus-variant |
platypus, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/plek |
shpc-registry automated BioContainers addition for plek |
PLEK, PLEK.model, PLEK.py, PLEK.range, PLEKModelling.py, PLEK_generate_scripts.R, PLEK_setup.py, PLEK_spsn, svm-easy.py, svm-subset.py, svm_grid_modelling.py, svm_grid_modelling_singlet.py, svm-predict, svm-scale, svm-train, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/pling |
singularity registry hpc automated addition for pling |
dingII, plasnet, pling, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex, rst2xml, sourmash, eido, screed, protoc-25.3.0, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, mapview, mgaps, run-mummer1, run-mummer3, stone, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot, nucmer, promer, repeat-match |
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GITHUB
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quay.io/biocontainers/plink |
shpc-registry automated BioContainers addition for plink |
plink |
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GITHUB
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quay.io/biocontainers/plink2 |
shpc-registry automated BioContainers addition for plink2 |
plink2 |
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GITHUB
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quay.io/biocontainers/plinkio |
singularity registry hpc automated addition for plinkio |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/plncpro |
shpc-registry automated BioContainers addition for plncpro |
plncpro, plncpro_format_ff.sh, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/plotcritic |
shpc-registry automated BioContainers addition for plotcritic |
plotcritic, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/plotly |
shpc-registry automated BioContainers addition for plotly |
jupyter-trust, jupyter, jupyter-migrate, jupyter-troubleshoot, jsonschema, chardetect, 2to3-3.6, idle3.6, pydoc3.6, python3.6 |
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GITHUB
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quay.io/biocontainers/plotsr |
singularity registry hpc automated addition for plotsr |
plotsr, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, gif2rgb, gifbuild, gifclrmp, giffix, giftext, giftool |
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GITHUB
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quay.io/biocontainers/pm4ngs |
shpc-registry automated BioContainers addition for pm4ngs |
bagit.py, bioconda2biocontainer, bioconda2cwldocker, biocontainers-search, cheetah, cheetah-analyze, cheetah-compile, cookiecutter, galaxy-tool-test, goenrichment, jupyter-console, jupyter-qtconsole, mulled-build, mulled-build-channel, mulled-build-files, mulled-build-tool, mulled-list, mulled-search, mulled-update-singularity-containers, pm4ngs-chipexo, pm4ngs-chipexo-demo, pm4ngs-chipseq, pm4ngs-chipseq-demo, pm4ngs-create, pm4ngs-rnaseq, pm4ngs-rnaseq-demo, pm4ngs-server, prov-compare, prov-convert, wsdump.py, cwltool, conda-env, cph, schema-salad-doc, schema-salad-tool, pdfattach, csv2rdf, pdfdetach, pdffonts, pdfimages |
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GITHUB
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quay.io/biocontainers/pmdtools |
shpc-registry automated BioContainers addition for pmdtools |
plotPMD, pmdtools, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa |
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GITHUB
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quay.io/biocontainers/pmga |
singularity registry hpc automated addition for pmga |
executor, pmga, pmga-build, mash, coloredlogs, humanfriendly, pigz, unpigz, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl, sort-table |
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GITHUB
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quay.io/biocontainers/pmlst |
singularity registry hpc automated addition for pmlst |
download-db.sh, kma, kma_index, kma_shm, kma_update, pmlst.py, tabulate, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl, sort-table, spdi2tbl, split-at-intron, tbl2xml, transmute.Linux |
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GITHUB
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quay.io/biocontainers/pmmrcalculator |
shpc-registry automated BioContainers addition for pmmrcalculator |
pmmrcalculator, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/pmultiqc |
shpc-registry automated BioContainers addition for pmultiqc |
parse_sdrf, multiqc, cmark, coloredlogs, humanfriendly, py.test, pytest, markdown_py, pygmentize, fonttools, pyftmerge |
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GITHUB
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quay.io/biocontainers/pmx_biobb |
shpc-registry automated BioContainers addition for pmx_biobb |
pmx, fonttools, pyftmerge, pyftsubset, ttx, brotli, futurize, pasteurize, f2py3.7, img2webp, cwebp |
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GITHUB
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quay.io/biocontainers/pneumo-typer |
singularity registry hpc automated addition for pneumo-typer |
blastn_vdb, faToNib, gfClient, nibFrag, pneumo-typer, pslPretty, pslReps, pslSort, tblastn_vdb, gfServer, twoBitToFa, blat, twoBitInfo, uuid, uuid-config, faToTwoBit, bp_aacomp, bp_bioflat_index, bp_biogetseq, bp_dbsplit, bp_extract_feature_seq, bp_fastam9_to_table, bp_fetch, bp_filter_search, bp_find-blast-matches, bp_gccalc, bp_genbank2gff3, bp_index, bp_local_taxonomydb_query, bp_make_mrna_protein, bp_mask_by_search, bp_mrtrans, bp_mutate, bp_nexus2nh |
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GITHUB
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quay.io/biocontainers/pneumocat |
shpc-registry automated BioContainers addition for pneumocat |
PneumoCaT.py, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, guess-ploidy.py |
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GITHUB
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quay.io/biocontainers/poa |
shpc-registry automated BioContainers addition for poa |
make_pscores.pl, poa, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb, impala, makemat |
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GITHUB
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quay.io/biocontainers/pod5 |
singularity registry hpc automated addition for pod5 |
pod5, protoc-25.3.0, h5tools_test_utils, numpy-config, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, elasticurl, elasticurl_cpp, elastipubsub, h5fuse.sh, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, gflags_completions.sh, h5delete, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin |
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GITHUB
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quay.io/biocontainers/polap |
singularity registry hpc automated addition for polap |
abi-dump.3, abi-dump.3.1.1, align-info.3, align-info.3.1.1, assembly-stats, bioawk, cache-mgr.3, cache-mgr.3.1.1, check-corrupt, check-corrupt.3, check-corrupt.3.1.1, convert_orthofinder_tree_ids.py, csvtk, fasterq-dump-orig.3.1.1, fasterq-dump.3, fasterq-dump.3.1.1, fastme, fastq-dump-orig.3.1.1, fastq-dump.3, fastq-dump.3.1.1, gfastats, illumina-dump.3, illumina-dump.3.1.1, kdbmeta.3, kdbmeta.3.1.1, make_ultrametric.py, ngs-pileup, ngs-pileup.3, ngs-pileup.3.1.1, orthofinder, polap, polap-conda-environment-fmlrc.yaml, polap-conda-environment.yaml, polap-mt.1.c70.3.faa, polap-parsing.sh, polap-pt.2.c70.3.faa, polap.sh, prefetch-orig.3.1.1, prefetch.3, prefetch.3.1.1, primary_transcript.py, rcexplain.3, rcexplain.3.1.1, rcl, rcl-dot-resmap.pl, rcl-qc, rcl-qm.R, rcl-relevel.pl, rcl-select.pl, rcldo.pl, ref-variation, ref-variation.3, ref-variation.3.1.1, run-polap-genes.R, run-polap-jellyfish.R, run-polap-mtcontig.R, run-polap-ncbitools, run-polap-pairs.R, sam-dump-orig.3.1.1, sam-dump.3, sam-dump.3.1.1, sff-dump.3, sff-dump.3.1.1, sra-info, sra-info.3, sra-info.3.1.1, sra-pileup-orig.3.1.1, sra-pileup.3, sra-pileup.3.1.1, sra-search, sra-search.3, sra-search.3.1.1, sra-stat.3, sra-stat.3.1.1, srapath-orig.3.1.1, srapath.3, srapath.3.1.1, sratools.3, sratools.3.1.1, test-sra.3, test-sra.3.1.1, var-expand, var-expand.3, var-expand.3.1.1, vdb-config.3, vdb-config.3.1.1, vdb-decrypt.3, vdb-decrypt.3.1.1, vdb-dump-orig.3.1.1, vdb-dump.3, vdb-dump.3.1.1, vdb-encrypt.3, vdb-encrypt.3.1.1, vdb-validate.3, vdb-validate.3.1.1, bsmp2info, flye-modules, flye-samtools, fsa2xml, gbf2info, just-top-hits, raxml-ng, raxml-ng-mpi, systematic-mutations, flye, flye-minimap2, fasterq-dump-orig, fastq-dump-orig, prefetch-orig, sam-dump-orig, sra-pileup-orig, srapath-orig, iqtree2, sratools, abi-dump, align-info, cache-mgr, fasterq-dump, fastq-dump, illumina-dump |
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GITHUB
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quay.io/biocontainers/polars |
singularity registry hpc automated addition for polars |
f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
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quay.io/biocontainers/poly-qtlseq |
singularity registry hpc automated addition for poly-qtlseq |
pcre2posix_test, polyQtlseq, jwebserver, lttng-gen-tp, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, snpEff, fastp, gff2gff.py, igzip, jpackage, hb-info, qualfa2fq.pl, xa2multi.pl, guess-ploidy.py, plot-roh.py, run-roh.pl, bwa, cups-config, ippeveprinter, ipptool, color-chrs.pl, plot-vcfstats, bcftools |
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GITHUB
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quay.io/biocontainers/polymutt |
shpc-registry automated BioContainers addition for polymutt |
bugpoint, c-index-test, clang, clang++, clang-4.0, clang-check, clang-cl, clang-cpp, clang-format, clang-import-test, clang-offload-bundler, git-clang-format, llc, lli, llvm-ar, llvm-as, llvm-bcanalyzer, llvm-c-test, llvm-cat, llvm-config, llvm-cov, llvm-cxxdump, llvm-cxxfilt, llvm-diff, llvm-dis, llvm-dsymutil, llvm-dwarfdump, llvm-dwp, llvm-extract, llvm-lib, llvm-link, llvm-lto, llvm-lto2, llvm-mc, llvm-mcmarkup, llvm-modextract, llvm-nm, llvm-objdump, llvm-opt-report, llvm-pdbdump, llvm-profdata, llvm-ranlib, llvm-readobj, llvm-rtdyld, llvm-size, llvm-split, llvm-stress, llvm-strings, llvm-symbolizer, llvm-tblgen, llvm-xray, obj2yaml, opt, polymutt, sancov, sanstats, scan-build, scan-view, verify-uselistorder, yaml2obj |
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GITHUB
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quay.io/biocontainers/polypolish |
singularity registry hpc automated addition for polypolish |
polypolish, polypolish_insert_filter.pxd, polypolish_insert_filter.py, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/polystest |
shpc-registry automated BioContainers addition for polystest |
convertFromProline.R, runPolySTestCLI.R, run_polystest_app.R |
|
GITHUB
|
quay.io/biocontainers/pomegranate |
shpc-registry automated BioContainers addition for pomegranate |
cygdb, cython, cythonize, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m |
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GITHUB
|
quay.io/biocontainers/pomoxis |
shpc-registry automated BioContainers addition for pomoxis |
assess_assembly, assess_homopolymers, catalogue_errors, common_errors_from_bam, coverage_from_bam, coverage_from_fastx, fast_convert, find_indels, intersect_assembly_errors, long_fastx, mini_align, mini_assemble, miniasm, minidot, pomoxis_path, porechop, qscores_from_summary, ref_seqs_from_bam, reverse_bed, split_fastx, stats_from_bam, subsample_bam, summary_from_stats, tag_bam, trim_alignments, seqkit, racon, rampler, racon_wrapper, gff2gff.py, sdust, paftools.js, minimap2, k8, guess-ploidy.py |
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GITHUB
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quay.io/biocontainers/poolsnp |
singularity registry hpc automated addition for poolsnp |
PoolSNP.sh, PoolSnp.py, bad-sites.py, max-cov.py, parsort, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh, env_parallel.pdksh, env_parallel.sh, env_parallel.tcsh, env_parallel.zsh, niceload, parcat, parset, sem, sql, parallel, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
|
quay.io/biocontainers/popdel |
shpc-registry automated BioContainers addition for popdel |
popdel, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/popera |
shpc-registry automated BioContainers addition for popera |
popera, popera_dhs_count, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, ace2sam |
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GITHUB
|
quay.io/biocontainers/popgen-entropy |
shpc-registry automated BioContainers addition for popgen-entropy |
entropy, estpost.entropy, mirror_server, mirror_server_stop, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy |
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GITHUB
|
quay.io/biocontainers/poplddecay |
singularity registry hpc automated addition for poplddecay |
PopLDdecay |
|
GITHUB
|
quay.io/biocontainers/popoolation2 |
singularity registry hpc automated addition for popoolation2 |
cmh-test.pl, cmh2gwas.pl, combig-script.sh, combig.pl, count.pl, count2huge.pl, create-genewise-sync.pl, filter-sync-by-gtf.pl, find-compounds.pl, fisher-test.pl, fst-sliding.pl, huge-count.pl, huge-delete.pl, huge-merge.pl, huge-sort.pl, huge-split.pl, identify-indel-regions.pl, igv, igv_hidpi, kocos-script.sh, kocos.pl, mpileup2sync, mpileup2sync.pl, pwc2igv.pl, rank-script.sh, rank.pl, snp-frequency-diff.pl, statistic.pl, subsample-synchronized.pl, subsample_sync2GenePop.pl, subsample_sync2fasta.pl, synchronize-pileup.pl, jwebserver, annot-tsv, jpackage, qualfa2fq.pl, xa2multi.pl, bwa, cups-config, ippeveprinter, ipptool, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, fasta-sanitize.pl, plot-ampliconstats, jfr, tjbench, jdeprscan, jhsdb, jimage, jlink, jmod, jshell |
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GITHUB
|
quay.io/biocontainers/poppunk |
shpc-registry automated BioContainers addition for poppunk |
SvtAv1DecApp, SvtAv1EncApp, aomdec, aomenc, asn1Coding, asn1Decoding, asn1Parser, ffmpeg, ffprobe, gtk-builder-tool, gtk-encode-symbolic-svg, gtk-launch, gtk-query-immodules-3.0, gtk-query-settings, h264dec, h264enc, lame, mandrake, p11-kit, p11tool, poppunk, poppunk_add_weights.py, poppunk_assign, poppunk_batch_mst.py, poppunk_calculate_rand_indices.py, poppunk_calculate_silhouette.py, poppunk_easy_run.py, poppunk_extract_components.py, poppunk_extract_distances.py, poppunk_info, poppunk_iterate.py, poppunk_mandrake, poppunk_mst, poppunk_references, poppunk_visualise, rapidnj, sketchlib, trust, vpxdec, vpxenc, x264, x265, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv, psktool |
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GITHUB
|
quay.io/biocontainers/popscle |
shpc-registry automated BioContainers addition for popscle |
popscle, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats |
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GITHUB
|
quay.io/biocontainers/popt |
shpc-registry automated BioContainers addition for popt |
|
|
GITHUB
|
quay.io/biocontainers/pore-c |
shpc-registry automated BioContainers addition for pore-c |
intake, intake-server, pairtools, pbgzip, pore_c, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, cooler, bam2pairs, column_remover.pl, duplicate_header_remover.pl |
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GITHUB
|
quay.io/biocontainers/porechop |
shpc-registry automated BioContainers addition for porechop |
porechop, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
|
quay.io/biocontainers/porechop_abi |
singularity registry hpc automated addition for porechop_abi |
porechop_abi, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/poretools |
shpc-registry automated BioContainers addition for poretools |
|
|
GITHUB
|
quay.io/biocontainers/porfast |
shpc-registry automated BioContainers addition for porfast |
porfast |
|
GITHUB
|
quay.io/biocontainers/portcullis |
shpc-registry automated BioContainers addition for portcullis |
junctools, portcullis, portcullis_rule_filter, tabulate, fasta-sanitize.pl, plot-ampliconstats, f2py3.8, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long |
|
GITHUB
|
quay.io/biocontainers/poseidon-trident |
shpc-registry automated BioContainers addition for poseidon-trident |
trident |
|
GITHUB
|
quay.io/biocontainers/poseidon-xerxes |
singularity registry hpc automated addition for poseidon-xerxes |
xerxes |
|
GITHUB
|
quay.io/biocontainers/potrace |
shpc-registry automated BioContainers addition for potrace |
mkbitmap, potrace |
|
GITHUB
|
quay.io/biocontainers/pourrna |
shpc-registry automated BioContainers addition for pourrna |
RNAmultifold, pourRNA, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold |
|
GITHUB
|
quay.io/biocontainers/pout2mzid |
shpc-registry automated BioContainers addition for pout2mzid |
pout2mzid, xsd, CreateDOMDocument, DOMCount, DOMPrint, EnumVal, MemParse, PParse, PSVIWriter, Redirect, SAX2Count |
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GITHUB
|
quay.io/biocontainers/pp-sketchlib |
shpc-registry automated BioContainers addition for pp-sketchlib |
poppunk_sketch, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, h5clear |
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GITHUB
|
quay.io/biocontainers/pp |
shpc-registry automated BioContainers addition for pp |
|
|
GITHUB
|
quay.io/biocontainers/ppanggolin |
shpc-registry automated BioContainers addition for ppanggolin |
gawk-5.0.1, ppanggolin, mmseqs, aragorn, cmalign, cmbuild, cmcalibrate, cmconvert, cmemit, cmfetch, cmpress, cmscan |
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GITHUB
|
quay.io/biocontainers/ppanini |
shpc-registry automated BioContainers addition for ppanini |
ppanini, ppanini_barplot, ppanini_cluster2genes, ppanini_fasta_select, ppanini_gene_caller, ppanini_infer_gene, ppanini_join_tables, ppanini_press, ppanini_rename_contigs, ppanini_rev_uniref_mapper, ppanini_rocplot, ppanini_scatterplot, ppanini_test, qhelpconverter, f2py2, f2py2.7, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner, repc |
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GITHUB
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quay.io/biocontainers/pplacer |
shpc-registry automated BioContainers addition for pplacer |
pplacer, rppr, guppy |
|
GITHUB
|
quay.io/biocontainers/pprodigal |
singularity registry hpc automated addition for pprodigal |
pprodigal, prodigal, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/ppx |
shpc-registry automated BioContainers addition for ppx |
ppx, normalizer, tqdm, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/predex |
shpc-registry automated BioContainers addition for predex |
predex, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/predicthaplo |
shpc-registry automated BioContainers addition for predicthaplo |
predicthaplo |
|
GITHUB
|
quay.io/biocontainers/preface |
shpc-registry automated BioContainers addition for preface |
PREFACE, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/prefersim |
shpc-registry automated BioContainers addition for prefersim |
PReFerSim |
|
GITHUB
|
quay.io/biocontainers/prequal |
shpc-registry automated BioContainers addition for prequal |
prequal |
|
GITHUB
|
quay.io/biocontainers/preseq |
shpc-registry automated BioContainers addition for preseq |
preseq, to-mr, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/president |
shpc-registry automated BioContainers addition for president |
pblat, president, screed, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/presto |
shpc-registry automated BioContainers addition for presto |
AlignSets.py, AssemblePairs.py, BuildConsensus.py, ClusterSets.py, CollapseSeq.py, ConvertHeaders.py, EstimateError.py, FilterSeq.py, MaskPrimers.py, PairSeq.py, ParseHeaders.py, ParseLog.py, SplitSeq.py, UnifyHeaders.py, vsearch, muscle, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns |
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GITHUB
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quay.io/biocontainers/prestor |
shpc-registry automated BioContainers addition for prestor |
a2ping, a5toa4, adhocfilelist, afm2afm, allcm, allec, allneeded, arara, arlatex, authorindex, autoinst, bbl2bib, bibdoiadd, bibexport, bibmradd, bibtex, bibzbladd, bundledoc, cachepic, checkcites, checklistings, cjk-gs-integrate, context, contextjit, convbkmk, ctangle, ctanify, ctanupload, ctie, cweave, de-macro, depythontex, diadia, dtxgen, dvi2fax, dviasm, dvicopy, dvipdfm, dvipdfmx, dvipdft, dvired, dvitomp, dvitype, e2pall, ebb, ebong, epspdf, epspdftk, epstopdf, etex, exceltex, extractbb, fig4latex, findhyph, fmtutil, fmtutil-sys, fmtutil-user, fontinst, fragmaster, getmapdl, gftodvi, gftopk, gftype, initex, installfont-tl, jamo-normalize, kanji-config-updmap, kanji-config-updmap-sys, kanji-config-updmap-user, kanji-fontmap-creator, komkindex, kpseaccess, kpsepath, kpsereadlink, kpsestat, kpsetool, kpsewhere, kpsewhich, kpsexpand, latex, latex-git-log, latex-papersize, latex2man, latex2nemeth, latexdiff, latexdiff-vc, latexfileversion, latexindent, latexmk, latexpand, latexrevise, lily-glyph-commands, lily-image-commands, lily-rebuild-pdfs, listbib, listings-ext.sh, ltx2crossrefxml, ltxfileinfo, ltximg, lua2dox_filter, luaotfload-tool, luatools, lwarpmk, m-tx, make4ht, makedtx, makeglossaries, makeglossaries-lite, match_parens, mathspic, mf2pt1, mflua, mflua-nowin, mfluajit, mfluajit-nowin, mfplain, mft, mkgrkindex, mkjobtexmf, mkocp, mkofm, mkpic, mkt1font, mktexfmt, mktexlsr, mktexmf, mktexpk, mktextfm, mpost, mptopdf, mtxrun, mtxrunjit, multibibliography, musixflx, musixtex, odvicopy, odvitype, ofm2opl, omfonts, opl2ofm, ot2kpx, otangle, otp2ocp, outocp, ovf2ovp, ovp2ovf, patgen, pbibtex, pdf180, pdf270, pdf90, pdfannotextractor, pdfatfi, pdfbook, pdfbook2, pdfcrop, pdfflip, pdfjam, pdfjam-pocketmod, pdfjam-slides3up, pdfjam-slides6up, pdfjoin, pdflatex, pdflatexpicscale, pdfnup, pdfpun, pdftex, pdftosrc, pdfxup, pdvitype, pedigree, perl5.22.2, perltex, pfarrei, pkfix, pkfix-helper, pktogf, pktype, pltotf, pmxchords, pn2pdf, pooltype, ppltotf, ps2frag, ps4pdf, pslatex, pst2pdf, ptex, ptex2pdf, ptftopl, purifyeps, pygmentex, pythontex, repstopdf, rpdfcrop, rubibtex, rubikrotation, rumakeindex, rungs, simpdftex, splitindex, srcredact, sty2dtx, svn-multi, synctex, tangle, teckit_compile, tex, tex4ebook, texconfig, texconfig-dialog, texconfig-sys, texcount, texdef, texdiff, texdirflatten, texdoc, texexec, texfot, texhash, texlinks, texliveonfly, texloganalyser, texmfstart, texosquery, texosquery-jre5, texosquery-jre8, tftopl, thumbpdf, tie, tlmgr, ttf2afm, ttf2kotexfont, typeoutfileinfo, ulqda, updmap, updmap-sys, updmap-user, urlbst, vftovp, vpe, vpl2ovp, vpl2vpl, vptovf, weave, wofm2opl, wopl2ofm, wovf2ovp, wovp2ovf, xdvipdfmx, xetex, yplan, c2ph, pstruct, pandoc-citeproc, pandoc, podselect, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/pretext-suite |
shpc-registry automated BioContainers addition for pretext-suite |
PretextGraph, PretextGraph.avx, PretextGraph.avx2, PretextGraph.sse41, PretextGraph.sse42, PretextMap, PretextMap.avx, PretextMap.avx2, PretextMap.noext, PretextMap.sse41, PretextMap.sse42, PretextSnapshot, PretextSnapshot.avx, PretextSnapshot.avx2, PretextSnapshot.sse41, PretextSnapshot.sse42 |
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GITHUB
|
quay.io/biocontainers/pretextgraph |
shpc-registry automated BioContainers addition for pretextgraph |
PretextGraph, PretextGraph.avx, PretextGraph.avx2, PretextGraph.sse41, PretextGraph.sse42 |
|
GITHUB
|
quay.io/biocontainers/pretextmap |
shpc-registry automated BioContainers addition for pretextmap |
PretextMap, PretextMap.avx, PretextMap.avx2, PretextMap.noext, PretextMap.sse41, PretextMap.sse42 |
|
GITHUB
|
quay.io/biocontainers/pretextsnapshot |
shpc-registry automated BioContainers addition for pretextsnapshot |
PretextSnapshot, PretextSnapshot.avx, PretextSnapshot.avx2, PretextSnapshot.sse41, PretextSnapshot.sse42 |
|
GITHUB
|
quay.io/biocontainers/primalscheme |
shpc-registry automated BioContainers addition for primalscheme |
primalscheme, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc, tificc |
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GITHUB
|
quay.io/biocontainers/primedlamp |
shpc-registry automated BioContainers addition for primedlamp |
PrimedLAMP, PrimedLAMP_Amplicon_Success, PrimedLAMP_Cross_Reactivity_Update, PrimedLAMP_Custom, PrimedLAMP_Inclusivity_Update, PrimedLAMP_Tm_Update, clustalo, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras, pm-collect, readme.pdf, bt-context.txt, bt-link |
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GITHUB
|
quay.io/biocontainers/primedrpa |
shpc-registry automated BioContainers addition for primedrpa |
PrimedRPA, clustalo, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml |
|
GITHUB
|
quay.io/biocontainers/primer3-py |
shpc-registry automated BioContainers addition for primer3-py |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/primer3 |
shpc-registry automated BioContainers addition for primer3 |
|
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GITHUB
|
quay.io/biocontainers/primerclip |
shpc-registry automated BioContainers addition for primerclip |
primerclip, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
|
quay.io/biocontainers/primerforge |
singularity registry hpc automated addition for primerforge |
primerForge, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/primerprospector |
shpc-registry automated BioContainers addition for primerprospector |
amplicons_histograms.py, analyze_primers.py, bt2line, check_callstack, check_primer_barcode_dimers.py, clean_fasta.py, clog2_join, clog2_print, clog2_repair, generate_linkers.py, generate_primers_denovo.py, get_amplicons_and_reads.py, make_pp_rst_file.py, mpich2version, optimize_primers.py, sort_denovo_primers.py, taxa_assignment_report.py, taxa_coverage.py, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, easy_install-2.7, mpic++, mpicc, mpicxx, mpiexec, mpif77 |
|
GITHUB
|
quay.io/biocontainers/primers |
singularity registry hpc automated addition for primers |
primers, seqfold, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/primrose |
singularity registry hpc automated addition for primrose |
primrose |
|
GITHUB
|
quay.io/biocontainers/prince |
shpc-registry automated BioContainers addition for prince |
prince, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/prinseq-plus-plus |
shpc-registry automated BioContainers addition for prinseq-plus-plus |
prinseq++ |
|
GITHUB
|
quay.io/biocontainers/prinseq |
shpc-registry automated BioContainers addition for prinseq |
|
|
GITHUB
|
quay.io/biocontainers/probabilistic2020 |
shpc-registry automated BioContainers addition for probabilistic2020 |
extract_gene_seq, mut_annotate, probabilistic2020, simulate_non_silent_ratio, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/probamconvert |
shpc-registry automated BioContainers addition for probamconvert |
proBAM.py, proBAM_ENSEMBL.py, proBAM_GUI.py, proBAM_IDparser.py, proBAM_biomart.py, proBAM_coref.py, proBAM_input.py, proBAM_mzTab.py, proBAM_mzid.py, proBAM_pepxml.py, proBAM_proBED.py, easydev_buildPackage, ibrowse, multigit, browse, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, aggregate_profile.pl |
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GITHUB
|
quay.io/biocontainers/probcons |
shpc-registry automated BioContainers addition for probcons |
probcons, compare |
|
GITHUB
|
quay.io/biocontainers/probconsrna |
shpc-registry automated BioContainers addition for probconsrna |
probconsRNA |
|
GITHUB
|
quay.io/biocontainers/probeit |
shpc-registry automated BioContainers addition for probeit |
genmap, probeit, setcover, seqkit, mmseqs, gawk-5.1.0, awk, gawk, idn2, shiftBed, annotateBed, bamToBed, bamToFastq |
|
GITHUB
|
quay.io/biocontainers/proda |
shpc-registry automated BioContainers addition for proda |
proda |
|
GITHUB
|
quay.io/biocontainers/prodigal-gv |
singularity registry hpc automated addition for prodigal-gv |
prodigal-gv |
|
GITHUB
|
quay.io/biocontainers/prodigal |
shpc-registry automated BioContainers addition for prodigal |
prodigal |
|
GITHUB
|
quay.io/biocontainers/profile_dists |
singularity registry hpc automated addition for profile_dists |
cmtime, cpuinfo, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, mckey, profile_dists, protoc-24.3.0, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, ucmatose, udaddy, udpong, h5fuse.sh, io_demo, ucx_info, ucx_perftest, ucx_read_profile, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, h5delete, gflags_completions.sh, pt2to3 |
|
GITHUB
|
quay.io/biocontainers/progressivemauve |
shpc-registry automated BioContainers addition for progressivemauve |
progressiveMauve |
|
GITHUB
|
quay.io/biocontainers/prokaryote |
shpc-registry automated BioContainers addition for prokaryote |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/prokbert |
singularity registry hpc automated addition for prokbert |
cmtime, datasets-cli, get_gprof, huggingface-cli, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, mckey, protoc-24.4.0, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, sacremoses, transformers-cli, ucmatose, udaddy, udpong, cpuinfo, io_demo, ucx_info, ucx_perftest, ucx_read_profile, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, isympy, torchrun, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, xxh128sum, xxh32sum, xxh64sum, xxhsum, elasticurl, elasticurl_cpp, elastipubsub, convert-caffe2-to-onnx, convert-onnx-to-caffe2, csv-import, orc-memory, orc-scan |
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GITHUB
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quay.io/biocontainers/prokka |
shpc-registry automated BioContainers addition for prokka |
prokka, prokka-abricate_to_fasta_db, prokka-biocyc_to_fasta_db, prokka-build_kingdom_dbs, prokka-cdd_to_hmm, prokka-clusters_to_hmm, prokka-genbank_to_fasta_db, prokka-genpept_to_fasta_db, prokka-hamap_to_hmm, prokka-tigrfams_to_hmm, prokka-uniprot_to_fasta_db, tbl2asn-test, fix-sqn-date, faketime, real-tbl2asn, minced, tbl2asn, idn, aragorn, barrnap, bp_aacomp, bp_bioflat_index |
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GITHUB
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quay.io/biocontainers/proksee |
shpc-registry automated BioContainers addition for proksee |
icarus.py, metaquast, metaquast.py, proksee, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, skesa, circos, circos.exe, compile.bat, compile.make, fastp, gddiag, glimmerhmm, glimmhmm.pl, list.modules, test.modules |
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GITHUB
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quay.io/biocontainers/promotercalculator |
singularity registry hpc automated addition for promotercalculator |
promoter-calculator, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/pronto |
shpc-registry automated BioContainers addition for pronto |
x86_64-conda_cos7-linux-gnu-ld, chardetect, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/proot |
shpc-registry automated BioContainers addition for proot |
proot |
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GITHUB
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quay.io/biocontainers/proovframe |
shpc-registry automated BioContainers addition for proovframe |
proovframe, proovframe-fix, proovframe-map, proovframe-prf, seqkit, diamond, sdust, paftools.js, minimap2, k8, perl5.26.2, podselect |
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GITHUB
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quay.io/biocontainers/prophane |
shpc-registry automated BioContainers addition for prophane |
bsdcat, bsdcpio, bsdtar, conda2solv, dumpsolv, installcheck, mamba, mergesolv, prophane, repo2solv, testsolv, conda-env, cph, pulptest, cbc, clp, snakemake, snakemake-bash-completion, tabulate, jupyter-trust, jupyter |
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GITHUB
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quay.io/biocontainers/prophasm |
shpc-registry automated BioContainers addition for prophasm |
prophasm |
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GITHUB
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quay.io/biocontainers/prophex |
shpc-registry automated BioContainers addition for prophex |
prophex |
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GITHUB
|
quay.io/biocontainers/prophyle |
shpc-registry automated BioContainers addition for prophyle |
prophyle, prophyle_analyze.py, prophyle_assignment.py, prophyle_ncbi_tree.py, prophyle_otu_table.py, prophyle_paired_end.py, prophyle_plot_tree.py, prophyle_propagation_makefile.py, prophyle_propagation_postprocessing.py, prophyle_propagation_preprocessing.py, prophyle_split_allseq.py, ete3, compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, f2py3.6, certutil, nspr-config, nss-config |
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GITHUB
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quay.io/biocontainers/propy3 |
singularity registry hpc automated addition for propy3 |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/prosampler |
shpc-registry automated BioContainers addition for prosampler |
ProSampler |
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GITHUB
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quay.io/biocontainers/prosic |
shpc-registry automated BioContainers addition for prosic |
prosic |
|
GITHUB
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quay.io/biocontainers/prosolo |
shpc-registry automated BioContainers addition for prosolo |
bugpoint, c-index-test, clang, clang++, clang-10, clang-apply-replacements, clang-change-namespace, clang-check, clang-cl, clang-cpp, clang-doc, clang-extdef-mapping, clang-format, clang-import-test, clang-include-fixer, clang-move, clang-offload-bundler, clang-offload-wrapper, clang-query, clang-refactor, clang-rename, clang-reorder-fields, clang-scan-deps, clang-tidy, clangd, diagtool, dsymutil, find-all-symbols, git-clang-format, hmaptool, llc, lli, llvm-addr2line, llvm-ar, llvm-as, llvm-bcanalyzer, llvm-c-test, llvm-cat, llvm-cfi-verify, llvm-config, llvm-cov, llvm-cvtres, llvm-cxxdump, llvm-cxxfilt, llvm-cxxmap, llvm-diff, llvm-dis, llvm-dlltool, llvm-dwarfdump, llvm-dwp, llvm-elfabi, llvm-exegesis, llvm-extract, llvm-ifs, llvm-install-name-tool, llvm-jitlink, llvm-jitlistener, llvm-lib, llvm-link, llvm-lipo, llvm-lto, llvm-lto2, llvm-mc, llvm-mca, llvm-modextract, llvm-mt, llvm-nm, llvm-objcopy, llvm-objdump, llvm-opt-report, llvm-pdbutil, llvm-profdata, llvm-ranlib, llvm-rc, llvm-readelf, llvm-readobj, llvm-reduce, llvm-rtdyld, llvm-size, llvm-split, llvm-stress, llvm-strings, llvm-strip, llvm-symbolizer, llvm-tblgen, llvm-undname, llvm-xray, modularize, obj2yaml, opt, pp-trace, prosolo, sancov, sanstats, scan-build, scan-view, verify-uselistorder, yaml2obj |
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GITHUB
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quay.io/biocontainers/prot-scriber |
singularity registry hpc automated addition for prot-scriber |
prot-scriber |
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GITHUB
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quay.io/biocontainers/proteinortho |
shpc-registry automated BioContainers addition for proteinortho |
proteinortho, proteinortho2html.pl, proteinortho2tree.pl, proteinortho2xml.pl, proteinortho6.pl, proteinortho_cleanupblastgraph, proteinortho_clustering, proteinortho_compareProteinorthoGraphs.pl, proteinortho_do_mcl.pl, proteinortho_extract_from_graph.pl, proteinortho_ffadj_mcs.py, proteinortho_formatUsearch.pl, proteinortho_grab_proteins.pl, proteinortho_graphMinusRemovegraph, proteinortho_history.pl, proteinortho_singletons.pl, proteinortho_summary.pl, proteinortho_treeBuilderCore, diamond, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/proteomiqon-alignmentbasedquantification |
singularity registry hpc automated addition for proteomiqon-alignmentbasedquantification |
proteomiqon-alignmentbasedquantification, lttng-gen-tp |
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GITHUB
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quay.io/biocontainers/proteomiqon-alignmentbasedquantstatistics |
singularity registry hpc automated addition for proteomiqon-alignmentbasedquantstatistics |
lttng-gen-tp, proteomiqon-alignmentbasedquantstatistics |
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GITHUB
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quay.io/biocontainers/proteomiqon-joinquantpepionswithproteins |
shpc-registry automated BioContainers addition for proteomiqon-joinquantpepionswithproteins |
lttng-gen-tp, proteomiqon-joinquantpepionswithproteins |
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GITHUB
|
quay.io/biocontainers/proteomiqon-labeledproteinquantification |
shpc-registry automated BioContainers addition for proteomiqon-labeledproteinquantification |
lttng-gen-tp, proteomiqon-labeledproteinquantification |
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GITHUB
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quay.io/biocontainers/proteomiqon-labelfreeproteinquantification |
shpc-registry automated BioContainers addition for proteomiqon-labelfreeproteinquantification |
lttng-gen-tp, proteomiqon-labelfreeproteinquantification |
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GITHUB
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quay.io/biocontainers/proteomiqon-mzmltomzlite |
shpc-registry automated BioContainers addition for proteomiqon-mzmltomzlite |
lttng-gen-tp, proteomiqon-mzmltomzlite |
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GITHUB
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quay.io/biocontainers/proteomiqon-peptidedb |
shpc-registry automated BioContainers addition for proteomiqon-peptidedb |
lttng-gen-tp, proteomiqon-peptidedb |
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GITHUB
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quay.io/biocontainers/proteomiqon-peptidespectrummatching |
shpc-registry automated BioContainers addition for proteomiqon-peptidespectrummatching |
lttng-gen-tp, proteomiqon-peptidespectrummatching |
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GITHUB
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quay.io/biocontainers/proteomiqon-proteininference |
shpc-registry automated BioContainers addition for proteomiqon-proteininference |
lttng-gen-tp, proteomiqon-proteininference |
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GITHUB
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quay.io/biocontainers/proteomiqon-psmbasedquantification |
shpc-registry automated BioContainers addition for proteomiqon-psmbasedquantification |
lttng-gen-tp, proteomiqon-psmbasedquantification |
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GITHUB
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quay.io/biocontainers/proteomiqon-psmstatistics |
shpc-registry automated BioContainers addition for proteomiqon-psmstatistics |
lttng-gen-tp, proteomiqon-psmstatistics |
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GITHUB
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quay.io/biocontainers/proteowizard |
shpc-registry automated BioContainers addition for proteowizard |
chainsaw, idcat, idconvert, msaccess, msbenchmark, mscat, msconvert, msdiff, msdir, msistats, mspicture, peakaboo, pepcat, pepsum, qtofpeakpicker, sldout, txt2mzml |
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GITHUB
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quay.io/biocontainers/protgraph |
shpc-registry automated BioContainers addition for protgraph |
geomet, protgraph, protgraph_compact_fasta, protgraph_generate_fasta_decoys, protgraph_pepsqlite_to_fasta, protgraph_print_sums, protgraph_replace_fasta_header, igraph, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis, ndmetis, glpsol, protoc, normalizer |
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GITHUB
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quay.io/biocontainers/protk |
shpc-registry automated BioContainers addition for protk |
ASAPRatioPeptideParser, ASAPRatioProteinRatioParser, ASAPRatioPvalueParser, CombineOut, CompactParser, DatabaseParser, DiscoFilter, InterProphetParser, InteractParser, LibraPeptideParser, LibraProteinRatioParser, Mascot2XML, Mayu.pl, MzXML2Search, Out2XML, PTMProphetParser, PepXMLViewer.cgi, PeptideMapper, PeptideProphetParser, ProphetModels.pl, ProtProphModels.pl, ProteinProphet, Q3ProteinRatioParser, RTCalc, RTCatalogParser, RefreshParser, RespectParser, SSRCalc3.par, SSRCalc3.pl, Sequest2XML, Sqt2XML, StPeter, Tandem2XML, XPressPeptideParser, XPressProteinRatioParser, add_mz, add_retention_times.rb, augustus_to_proteindb.rb, batchcoverage, bioruby, br_biofetch.rb, br_bioflat.rb, br_biogetseq.rb, br_pmfetch.rb, calculate_pi, checkdb, compareProts.pl, compareProts3.pl, compareProts_ClusterHM.pl, createChargeFile.pl, decoyFASTA, decoyFastaGenerator.pl, digestdb, exporTPP.pl, fileDownloader.pl, filter_psms.rb, get_prots.pl, hardklor, interprophet.rb, make_decoy.rb, maker_to_proteindb.rb, manage_db.rb, mascot_search.rb, mascot_to_pepxml.rb, mergeCharges.pl, msgfplus_search.rb, mzid_to_pepxml.rb, mzid_to_protxml.rb, omssa_search.rb, out2summary, pep_dbcount, peptide_prophet.rb, pepxml_to_table.rb, pepxmlcheck.pl, perl-reversion, protein_prophet.rb, protk_setup.rb, protxml2html.pl, protxml_to_gff.rb, protxml_to_psql.rb, protxml_to_table.rb, renamedat.pl, repair_run_summary.rb, replaceall.pl, restclient, sixframe.rb, spectrast, spectrast_create.rb, spectrast_filter.rb, subsetdb, swissprot_to_table.rb, tandem_search.rb, tandem_to_pepxml.rb, tpp_hostname, tpp_models.pl, tpptray.bat, translateDNA2AA-FASTA, unimod_to_loc.rb, uniprot_mapper.rb, updatepaths.pl, xinteract, erb, gem, irb, rake, rdoc, ri, ruby, perl5.22.0, c2ph, pstruct |
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GITHUB
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quay.io/biocontainers/protmapper |
shpc-registry automated BioContainers addition for protmapper |
protmapper, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, jp.py, chardetect, 2to3-3.9, idle3.9, pydoc3.9 |
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GITHUB
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quay.io/biocontainers/protrac |
shpc-registry automated BioContainers addition for protrac |
bdf2gdfont.PLS, cvtbdf.pl, proTRAC_2.4.2.pl, bdf2gdfont.pl, bdftogd, gd2copypal, gd2togif, gd2topng, gdcmpgif, gdparttopng, gdtopng, giftogd2, pngtogd |
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GITHUB
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quay.io/biocontainers/provean |
singularity registry hpc automated addition for provean |
provean, provean.sh, FET.pl, cd-hit-clstr_2_blm8.pl, clstr_list.pl, clstr_list_sort.pl, cd-hit, cd-hit-2d, cd-hit-2d-para.pl, cd-hit-454, cd-hit-div, cd-hit-div.pl, cd-hit-est-2d, cd-hit-para.pl, clstr2tree.pl, clstr2txt.pl, clstr2xml.pl, clstr_cut.pl, clstr_merge.pl, clstr_merge_noorder.pl, clstr_quality_eval.pl, clstr_quality_eval_by_link.pl, clstr_reduce.pl, clstr_renumber.pl, clstr_rep.pl, clstr_reps_faa_rev.pl, clstr_rev.pl |
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GITHUB
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quay.io/biocontainers/prscs |
singularity registry hpc automated addition for prscs |
PRScs.py, gigrnd.py, mcmc_gtb.py, parse_genet.py, mirror_server, mirror_server_stop, f2py3.10, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp, h5perf_serial, h5redeploy, h5repack, h5repart, h5stat, h5unjam, h5dump, h5cc |
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GITHUB
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quay.io/biocontainers/prymer |
singularity registry hpc automated addition for prymer |
amplicon3_core, long_seq_tm_test, ntdpal, ntthal, oligotm, primer3_core, primer3_masker, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/psap |
shpc-registry automated BioContainers addition for psap |
black, blackd, psap, versioneer, fonttools, pyftmerge, pyftsubset, ttx, tqdm, brotli, f2py3.10, img2webp, cwebp, dwebp |
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GITHUB
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quay.io/biocontainers/psascan |
shpc-registry automated BioContainers addition for psascan |
psascan |
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GITHUB
|
quay.io/biocontainers/psass |
shpc-registry automated BioContainers addition for psass |
psass |
|
GITHUB
|
quay.io/biocontainers/psdm |
shpc-registry automated BioContainers addition for psdm |
psdm |
|
GITHUB
|
quay.io/biocontainers/pseudo-it |
singularity registry hpc automated addition for pseudo-it |
pseudo_it.py, 2to3-3.11, gatk, idle3.11, pydoc3.11, python3.11, python3.11-config, picard, gff2gff.py, cups-config, ippeveprinter, ipptool, qualfa2fq.pl, xa2multi.pl, bwa, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, fasta-sanitize.pl, shiftBed, plot-ampliconstats, annotateBed |
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GITHUB
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quay.io/biocontainers/psiclass |
shpc-registry automated BioContainers addition for psiclass |
add-genename, classes, combine-subexons, junc, psiclass, subexon-info, trust-splice, vote-transcripts, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/psims |
singularity registry hpc automated addition for psims |
f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, xslt-config, xsltproc, python3.1 |
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GITHUB
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quay.io/biocontainers/psirc |
singularity registry hpc automated addition for psirc |
create_custom_transcriptome_fa.pl, psirc, psirc-quant, psirc_v1.0.pl, h5tools_test_utils, annot-tsv, h5fuse.sh, h5delete, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp, h5perf_serial, h5redeploy, h5repack, h5repart, h5stat, h5unjam, h5dump |
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GITHUB
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quay.io/biocontainers/psm-utils |
singularity registry hpc automated addition for psm-utils |
f2py3.11, psm-utils, psm_utils, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, cmark, pygmentize, fonttools, pyftmerge, pyftsubset, ttx, brotli, futurize, pasteurize, xslt-config, xsltproc, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/psm_fragments |
shpc-registry automated BioContainers addition for psm_fragments |
xslt-config, xsltproc, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc |
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GITHUB
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quay.io/biocontainers/psmc |
singularity registry hpc automated addition for psmc |
Makefile, avg.pl, calD, calD.c, calD.o, cntcpg, cntcpg.c, cntcpg.o, ctime_plot.pl, dec2ctime.pl, decode2bed.pl, fq2psmcfa, fq2psmcfa.c, fq2psmcfa.o, history2ms.pl, khash.h, ms2psmcfa.pl, mutDiff, mutDiff.c, mutDiff.o, pcnt_bezier.lua, psmc, psmc2history.pl, psmc_plot.pl, psmc_trunc.pl, splitfa, splitfa.c, splitfa.o |
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GITHUB
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quay.io/biocontainers/pstools |
shpc-registry automated BioContainers addition for pstools |
pstools |
|
GITHUB
|
quay.io/biocontainers/pstrain |
singularity registry hpc automated addition for pstrain |
GenomeAnalysisTK.jar, PStrain.py, PStrain_m2.py, add_metadata_tree.py, breadth_depth.py, collect_metaphlan_datbase.sh, consensus.py, consensus_aDNA.py, extract_markers.py, iteration.py, merge.py, merge_metaphlan_tables.py, metaphlan, my_imports.py, phylophlan, phylophlan_assign_sgbs, phylophlan_draw_metagenomic, phylophlan_get_reference, phylophlan_setup_database, phylophlan_strain_finder, phylophlan_write_config_file, phylophlan_write_default_configs.sh, picard.jar, pipeline.py, pipeline_V30.py, plot_tree_graphlan.py, poly.py, polymut.py, pstrain, pstrain_index_metaphlan3.sh, psudo.py, read_fastx.py, reads_info.py, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex, rst2xml, sample2markers.py, sgb_to_gtdb_profile.py, single_merge.py, single_species.py, strain_transmission.py, strainphlan, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gbf2fsa, gbf2ref, gm2ranges, gm2segs, ini2xml, jsonl2xml |
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GITHUB
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quay.io/biocontainers/psytrans |
shpc-registry automated BioContainers addition for psytrans |
psytrans.py, svm-predict, svm-scale, svm-train, CA.pm, cacert.pem, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt |
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GITHUB
|
quay.io/biocontainers/ptgaul |
singularity registry hpc automated addition for ptgaul |
assembly-stats, combine_gfa.py, flye, flye-minimap2, flye-modules, flye-samtools, ptGAUL.sh, seqkit, seqtk, sdust, paftools.js, minimap2, k8, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/ptools_bin |
shpc-registry automated BioContainers addition for ptools_bin |
10x_bam2fastq, compress, createDiff, getSeq_genome_wN, getSeq_genome_woN, makeBAM.sh, makeDiff.sh, makeFastq.sh, make_unique, makepBAM_genome.sh, makepBAM_transcriptome.sh, pbam2bam, pbam_mapped_transcriptome, print_unique, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
|
quay.io/biocontainers/ptrimmer |
shpc-registry automated BioContainers addition for ptrimmer |
ptrimmer |
|
GITHUB
|
quay.io/biocontainers/pubchempy |
shpc-registry automated BioContainers addition for pubchempy |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/pubmlst_client |
shpc-registry automated BioContainers addition for pubmlst_client |
pubmlst_download, pubmlst_list, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/pulchra |
shpc-registry automated BioContainers addition for pulchra |
pulchra |
|
GITHUB
|
quay.io/biocontainers/pullseq |
shpc-registry automated BioContainers addition for pullseq |
pullseq, seqdiff |
|
GITHUB
|
quay.io/biocontainers/pureclip |
shpc-registry automated BioContainers addition for pureclip |
compute_CLmotif_scores.sh, dreme-py3, fasta-dinucleotide-shuffle-py3, fasta-hamming-enrich-py3, fasta-re-match, meme-chip_html_to_tsv, momo, pureclip, winextract, xsltproc_lite, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip |
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GITHUB
|
quay.io/biocontainers/purge-dups-runner |
singularity registry hpc automated addition for purge-dups-runner |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/purge_dups |
shpc-registry automated BioContainers addition for purge_dups |
calcuts, get_seqs, ngscstat, pbcstat, purge_dups, split_fa, sdust, paftools.js, minimap2, k8 |
|
GITHUB
|
quay.io/biocontainers/purge_haplotigs |
shpc-registry automated BioContainers addition for purge_haplotigs |
purge_haplotigs, sdust, paftools.js, minimap2, k8, fasta-sanitize.pl, shiftBed, plot-ampliconstats, annotateBed, bamToBed, bamToFastq |
|
GITHUB
|
quay.io/biocontainers/purple-bio |
shpc-registry automated BioContainers addition for purple-bio |
tqdm, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7 |
|
GITHUB
|
quay.io/biocontainers/pvacseq |
shpc-registry automated BioContainers addition for pvacseq |
connexion, pvacseq, pvacseq-ui, flask, vcf_sample_filter.py, vcf_filter.py, vcf_melt, easy_install-3.6, jsonschema, 2to3-3.6, idle3.6, pydoc3.6, python3.6 |
|
GITHUB
|
quay.io/biocontainers/pxblat |
singularity registry hpc automated addition for pxblat |
pxblat, markdown-it, pygmentize, f2py3.10, htsfile, bgzip, tabix, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/py-graphviz |
shpc-registry automated BioContainers addition for py-graphviz |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/py2bit |
shpc-registry automated BioContainers addition for py2bit |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/py2neo |
shpc-registry automated BioContainers addition for py2neo |
geoff, neokit, py2neo, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/py_fasta_validator |
singularity registry hpc automated addition for py_fasta_validator |
py_fasta_validator, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/pyaavf |
shpc-registry automated BioContainers addition for pyaavf |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/pyabpoa |
singularity registry hpc automated addition for pyabpoa |
cygdb, cython, cythonize, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/pyalveo |
shpc-registry automated BioContainers addition for pyalveo |
pyjwt, chardetect, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config |
|
GITHUB
|
quay.io/biocontainers/pyaml |
shpc-registry automated BioContainers addition for pyaml |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/pyani |
shpc-registry automated BioContainers addition for pyani |
average_nucleotide_identity.py, delta_filter_wrapper.py, genbank_get_genomes_by_taxon.py, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb, impala, makemat |
|
GITHUB
|
quay.io/biocontainers/pyarrow |
shpc-registry automated BioContainers addition for pyarrow |
csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin |
|
GITHUB
|
quay.io/biocontainers/pyasn1-modules |
shpc-registry automated BioContainers addition for pyasn1-modules |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/pyasp |
shpc-registry automated BioContainers addition for pyasp |
2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/pyasr |
shpc-registry automated BioContainers addition for pyasr |
sumlabels.py, sumtrees.py, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
|
GITHUB
|
quay.io/biocontainers/pybamparser |
shpc-registry automated BioContainers addition for pybamparser |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/pybamtools |
shpc-registry automated BioContainers addition for pybamtools |
f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/pybarrnap |
singularity registry hpc automated addition for pybarrnap |
pybarrnap, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/pybbi |
shpc-registry automated BioContainers addition for pybbi |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/pybda |
shpc-registry automated BioContainers addition for pybda |
|
|
GITHUB
|
quay.io/biocontainers/pybdei |
singularity registry hpc automated addition for pybdei |
bdei_infer, bdei_loglikelihood, bdei_u, generate_bd, generate_bdei, generate_bdss, generate_mtbd, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, numpy-config, mpg123, mpg123-id3dump, mpg123-strip, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, mpicalc, yat2m, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, balsam, lprodump, lrelease-pro, lupdate-pro |
|
GITHUB
|
quay.io/biocontainers/pybedgraph |
shpc-registry automated BioContainers addition for pybedgraph |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/pybedlite |
singularity registry hpc automated addition for pybedlite |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/pybedtools |
shpc-registry automated BioContainers addition for pybedtools |
f2py3.6, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools |
|
GITHUB
|
quay.io/biocontainers/pybel |
shpc-registry automated BioContainers addition for pybel |
geoff, neokit, p2n, py2neo, pybel, pyfiglet, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, pygmentize, chardetect, python2-config, python2.7-config, python2 |
|
GITHUB
|
quay.io/biocontainers/pybigtools |
singularity registry hpc automated addition for pybigtools |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/pybigwig |
shpc-registry automated BioContainers addition for pybigwig |
2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/pybiolib |
singularity registry hpc automated addition for pybiolib |
biolib, gunicorn, wsdump, flask, cmark, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, pygmentize, futurize, pasteurize, normalizer, python3.1 |
|
GITHUB
|
quay.io/biocontainers/pybiomart |
shpc-registry automated BioContainers addition for pybiomart |
futurize, pasteurize, f2py3.8, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/pybmtools |
singularity registry hpc automated addition for pybmtools |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/pychopper |
shpc-registry automated BioContainers addition for pychopper |
cdna_classifier.py, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat |
|
GITHUB
|
quay.io/biocontainers/pycli |
shpc-registry automated BioContainers addition for pycli |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/pyclone-vi |
shpc-registry automated BioContainers addition for pyclone-vi |
pyclone-vi, numba, pycc, f2py3.9, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++ |
|
GITHUB
|
quay.io/biocontainers/pyclone |
shpc-registry automated BioContainers addition for pyclone |
|
|
GITHUB
|
quay.io/biocontainers/pycluster |
shpc-registry automated BioContainers addition for pycluster |
f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/pycodestyle |
shpc-registry automated BioContainers addition for pycodestyle |
pycodestyle, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/pycomo |
singularity registry hpc automated addition for pycomo |
depinfo, pycomo, httpx, isympy, markdown-it, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, glpsol, futurize, pasteurize, pygmentize |
|
GITHUB
|
quay.io/biocontainers/pycoqc |
shpc-registry automated BioContainers addition for pycoqc |
Barcode_split, Fast5_to_seq_summary, pycoQC, jupyter-trust, jupyter, jupyter-migrate, jupyter-troubleshoot, jsonschema, tqdm, f2py3.7, chardetect, 2to3-3.7, idle3.7 |
|
GITHUB
|
quay.io/biocontainers/pycov3 |
singularity registry hpc automated addition for pycov3 |
pycov3, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/pycrac |
shpc-registry automated BioContainers addition for pycrac |
pyAlignment2Tab.py, pyBarcodeFilter.py, pyBinCollector.py, pyCalculateChromosomeLengths.py, pyCalculateFDRs.py, pyCalculateMutationFrequencies.py, pyCheckGTFfile.py, pyClusterReads.py, pyExtractLinesFromGTF.py, pyFasta2tab.py, pyFastqDuplicateRemover.py, pyFastqJoiner.py, pyFastqSplitter.py, pyFilterGTF.py, pyGTF2bed.py, pyGTF2bedGraph.py, pyGTF2sgr.py, pyGetGTFSources.py, pyGetGeneNamesFromGTF.py, pyMotif.py, pyNormalizeIntervalLengths.py, pyPileup.py, pyReadAligner.py, pyReadCounters.py, pySelectMotifsFromGTF.py, pybed2GTF.py, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/pycsg |
shpc-registry automated BioContainers addition for pycsg |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/pyctv_taxonomy |
singularity registry hpc automated addition for pyctv_taxonomy |
pyctv.py, pyctv_taxonomy.py, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, normalizer, python3.1 |
|
GITHUB
|
quay.io/biocontainers/pydamage |
shpc-registry automated BioContainers addition for pydamage |
pydamage, fonttools, pyftmerge, pyftsubset, ttx, tqdm, brotli, f2py3.10, img2webp, cwebp, dwebp |
|
GITHUB
|
quay.io/biocontainers/pydemult |
shpc-registry automated BioContainers addition for pydemult |
pydemult, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/pydeseq2 |
singularity registry hpc automated addition for pydeseq2 |
h5delete, jupyter-console, jupyter-events, jupyter-nbclassic, jupyter-nbclassic-bundlerextension, jupyter-nbclassic-extension, jupyter-nbclassic-serverextension, jupyter-server, qtpy, wsdump, jupyter-qtconsole, mpg123, mpg123-id3dump, mpg123-strip, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, jupyter-execute, libgcrypt-config, mpicalc, yat2m, jupyter-dejavu, send2trash, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, attr, balsam, getfattr |
|
GITHUB
|
quay.io/biocontainers/pydmtools |
singularity registry hpc automated addition for pydmtools |
f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, python3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/pydna |
shpc-registry automated BioContainers addition for pydna |
f2py3.8, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/pydna_repeatfinder |
singularity registry hpc automated addition for pydna_repeatfinder |
pydna_repeatfinder, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/pydnase |
shpc-registry automated BioContainers addition for pydnase |
dnase_average_profile.py, dnase_bias_estimator.py, dnase_cut_counter.py, dnase_ddhs_scorer.py, dnase_to_JSON.py, dnase_to_javatreeview.py, dnase_wig_tracks.py, example_footprint_scores.py, wellington_bootstrap.py, wellington_footprints.py, fonttools, pyftmerge, pyftsubset, ttx, brotli, fasta-sanitize.pl, shiftBed, plot-ampliconstats, annotateBed, bamToBed |
|
GITHUB
|
quay.io/biocontainers/pydoe |
shpc-registry automated BioContainers addition for pydoe |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/pydotplus |
shpc-registry automated BioContainers addition for pydotplus |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/pydownsampler |
shpc-registry automated BioContainers addition for pydownsampler |
pydownsampler, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/pydp |
shpc-registry automated BioContainers addition for pydp |
numba, pycc, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config |
|
GITHUB
|
quay.io/biocontainers/pydpi |
shpc-registry automated BioContainers addition for pydpi |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/pydustmasker |
singularity registry hpc automated addition for pydustmasker |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/pyeasyfuse |
singularity registry hpc automated addition for pyeasyfuse |
easy-fuse, gffutils-cli, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py, bed_count_overlapping.py, bed_coverage.py, bed_coverage_by_interval.py, bed_diff_basewise_summary.py, bed_extend_to.py, bed_intersect.py, bed_intersect_basewise.py, bed_merge_overlapping.py, bed_rand_intersect.py, bed_subtract_basewise.py, bnMapper.py, div_snp_table_chr.py, find_in_sorted_file.py, gene_fourfold_sites.py |
|
GITHUB
|
quay.io/biocontainers/pyega3 |
shpc-registry automated BioContainers addition for pyega3 |
htsget, pyega3, normalizer, tqdm, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/pyensembl |
shpc-registry automated BioContainers addition for pyensembl |
epylint, isort, isort-identify-imports, pyensembl, pylint, pylint-config, pyreverse, symilar, get_objgraph, undill, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/pyexcelerator |
shpc-registry automated BioContainers addition for pyexcelerator |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/pyfaidx |
shpc-registry automated BioContainers addition for pyfaidx |
vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/pyfamsa |
singularity registry hpc automated addition for pyfamsa |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/pyfasta |
shpc-registry automated BioContainers addition for pyfasta |
pyfasta, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/pyfastani |
singularity registry hpc automated addition for pyfastani |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/pyfastaq |
shpc-registry automated BioContainers addition for pyfastaq |
fastaq, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/pyfastg |
singularity registry hpc automated addition for pyfastg |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/pyfastx |
shpc-registry automated BioContainers addition for pyfastx |
pyfastx, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/pyfba |
shpc-registry automated BioContainers addition for pyfba |
black, black-primer, blackd, jupyter-console, jupyter-dejavu, jupyter-execute, jupyter-qtconsole, pyfba, send2trash, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run, curve_keygen, xkbcli |
|
GITHUB
|
quay.io/biocontainers/pyfiglet |
shpc-registry automated BioContainers addition for pyfiglet |
pyfiglet, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/pyfish |
singularity registry hpc automated addition for pyfish |
f2py3.11, pyfish, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/pygcap |
singularity registry hpc automated addition for pygcap |
pygcap, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/pygenetic_code |
singularity registry hpc automated addition for pygenetic_code |
pygenetic_code, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/pygenometracks |
shpc-registry automated BioContainers addition for pygenometracks |
make_tracks_file, pgt, pyGenomeTracks, cooler, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix |
|
GITHUB
|
quay.io/biocontainers/pygenomeviz |
singularity registry hpc automated addition for pygenomeviz |
f2py3.11, pgv-download-dataset, pgv-mmseqs, pgv-mummer, pgv-pmauve, pgv-simpleplot, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
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quay.io/biocontainers/pygmes |
shpc-registry automated BioContainers addition for pygmes |
pygmes, ete3, diamond, prodigal, faidx, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config |
|
GITHUB
|
quay.io/biocontainers/pygraphviz |
shpc-registry automated BioContainers addition for pygraphviz |
dotty, lneato, easy_install-3.6, acyclic, bcomps, ccomps, circo, dijkstra, dot, dot2gxl, dot_builtins, edgepaint |
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GITHUB
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quay.io/biocontainers/pygresql |
shpc-registry automated BioContainers addition for pygresql |
pg_standby, oid2name, pg_receivewal, pg_resetwal, pg_waldump, vacuumlo, clusterdb, createdb, createuser, dropdb |
|
GITHUB
|
quay.io/biocontainers/pygtftk |
shpc-registry automated BioContainers addition for pygtftk |
gtftk, nosetests-3.9, nosetests, diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare |
|
GITHUB
|
quay.io/biocontainers/pygvcf2coverage |
shpc-registry automated BioContainers addition for pygvcf2coverage |
pygvcf2coverage, cyvcf2, coloredlogs, humanfriendly, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
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GITHUB
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quay.io/biocontainers/pyhalcyon |
shpc-registry automated BioContainers addition for pyhalcyon |
halcyon, freeze_graph, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, markdown_py, protoc, f2py3.7 |
|
GITHUB
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quay.io/biocontainers/pyham |
singularity registry hpc automated addition for pyham |
mpg123, mpg123-id3dump, mpg123-strip, orc-bugreport, orcc, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, libgcrypt-config, mpicalc, yat2m, tjbench, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, attr, balsam, getfattr, jackd |
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GITHUB
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quay.io/biocontainers/pyhashxx |
shpc-registry automated BioContainers addition for pyhashxx |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/pyhmmer |
shpc-registry automated BioContainers addition for pyhmmer |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/pyhmmsearch |
singularity registry hpc automated addition for pyhmmsearch |
pyhmmsearch, reformat_pyhmmsearch, serialize_hmm_models, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tqdm |
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GITHUB
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quay.io/biocontainers/pyimagingmspec |
shpc-registry automated BioContainers addition for pyimagingmspec |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
|
GITHUB
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quay.io/biocontainers/pyimzml |
shpc-registry automated BioContainers addition for pyimzml |
wheezy.template, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/pyinotify |
shpc-registry automated BioContainers addition for pyinotify |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/pyiron |
shpc-registry automated BioContainers addition for pyiron |
ase, ase-build, ase-db, ase-gui, ase-info, ase-run, phonopy, phonopy-FHI-aims, phonopy-bandplot, phonopy-crystal-born, phonopy-dispmanager, phonopy-gruneisen, phonopy-gruneisenplot, phonopy-pdosplot, phonopy-propplot, phonopy-qha, phonopy-tdplot, phonopy-vasp-born, phonopy-vasp-efe, flask, pt2to3, ptdump, ptrepack, pttree, qhelpconverter, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen |
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GITHUB
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quay.io/biocontainers/pyjaspar |
shpc-registry automated BioContainers addition for pyjaspar |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/pyjess |
singularity registry hpc automated addition for pyjess |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/pykofamsearch |
singularity registry hpc automated addition for pykofamsearch |
pykofamsearch, reformat_enzymes, reformat_pykofamsearch, serialize_kofam_models, subset_serialized_models, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tqdm |
|
GITHUB
|
quay.io/biocontainers/pylca |
shpc-registry automated BioContainers addition for pylca |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/pylibseq |
shpc-registry automated BioContainers addition for pylibseq |
msp, mspms, tskit, f2py3.6, jsonschema, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
|
GITHUB
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quay.io/biocontainers/pyliftover |
shpc-registry automated BioContainers addition for pyliftover |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/pyloh |
shpc-registry automated BioContainers addition for pyloh |
PyLOH.py, qhelpconverter, guess-ploidy.py, plot-roh.py, run-roh.pl, f2py2, f2py2.7, color-chrs.pl, qwebengine_convert_dict, plot-vcfstats, canbusutil |
|
GITHUB
|
quay.io/biocontainers/pylprotpredictor |
shpc-registry automated BioContainers addition for pylprotpredictor |
PylProtPredictor, codecov, flake8, pycodestyle, pyflakes, pylprotpredictor, coverage, diamond, py.test, pytest, prodigal, f2py3.8, chardetect, 2to3-3.8, idle3.8, pydoc3.8 |
|
GITHUB
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quay.io/biocontainers/pymisc-utils |
shpc-registry automated BioContainers addition for pymisc-utils |
__init__.py, call-program, call-sbatch, call_program.py, call_sbatch.py, column_selector.py, dask_utils.py, dataset_manager.py, deprecated_decorator.py, external_sparse_matrix_list.py, gene_ontology_utils.py, incremental_count_vectorizer.py, incremental_gaussian_estimator.py, latex.py, logging_utils.py, math_utils.py, ml_utils.py, mpl_utils.py, multicolumn_imputer.py, multicolumn_label_encoder.py, mygene_utils.py, nlp_utils.py, nltk, pandas_utils.py, parallel.py, physionet_utils.py, scancel-range, scancel_range.py, scip_utils.py, shell_utils.py, simple_numeric_bow_union.py, slurm.py, sparse_vector.py, ssh_utils.py, stats_utils.py, suppress_stdout_stderr.py, test-gzip, test_gzip.py, utils.py, validation_utils.py, runxlrd.py, dask-scheduler, dask-ssh, dask-worker, bokeh, diffimg, delaunay, gts-config, gts2dxf, gts2oogl |
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GITHUB
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quay.io/biocontainers/pymix |
shpc-registry automated BioContainers addition for pymix |
assistant-qt4, ccache-swig, designer-qt4, ghmm-config, lconvert-qt4, linguist-qt4, lrelease-qt4, lupdate-qt4, moc-qt4, pixeltool-qt4, probdist, pylupdate4, pyrcc4, pyuic4, qcollectiongenerator-qt4, qdbus-qt4, qdbuscpp2xml-qt4, qdbusviewer-qt4, qdbusxml2cpp-qt4, qdoc3-qt4, qhelpconverter-qt4, qhelpgenerator-qt4, qmake-qt4, qmlplugindump-qt4, qmlviewer-qt4, qt3to4-qt4, qtconfig-qt4, qttracereplay-qt4, rcc-qt4, scluster, smix_hmm, swig, uic-qt4, xmlpatterns-qt4, xmlpatternsvalidator-qt4, cluster, sip, qt.conf, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/pymlst |
singularity registry hpc automated addition for pymlst |
alembic, claMLST, clamlst, kma, kma_index, kma_shm, kma_update, pyMLST, pymlst, wgMLST, wgmlst, blat, mako-render, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns, mafft-fftnsi, mafft-ginsi, mafft-homologs.rb, mafft-linsi, mafft-nwns, mafft-nwnsi, mafft-profile, mafft-qinsi, mafft-xinsi, nwns, nwnsi, mafft, py.test, pytest |
|
GITHUB
|
quay.io/biocontainers/pymochi |
singularity registry hpc automated addition for pymochi |
demo_mochi.py, protoc-24.4.0, run_mochi.py, isympy, torchrun, convert-caffe2-to-onnx, convert-onnx-to-caffe2, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, tjbench, protoc, fonttools, pyftmerge, pyftsubset, ttx, brotli |
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GITHUB
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quay.io/biocontainers/pymot |
shpc-registry automated BioContainers addition for pymot |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/pymsaviz |
singularity registry hpc automated addition for pymsaviz |
f2py3.11, pymsaviz, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/pymummer |
shpc-registry automated BioContainers addition for pymummer |
fastaq, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer |
|
GITHUB
|
quay.io/biocontainers/pymuonsuite |
shpc-registry automated BioContainers addition for pymuonsuite |
ase, ase-build, ase-db, ase-gui, ase-info, ase-run, magresaverage, phylogen, pm-asephonons, pm-muairss, pm-muairss-gen, pm-nq, pm-symmetry, pm-uep-opt, pm-uep-plot, soprano_submitter, vasp2cell, flask, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp |
|
GITHUB
|
quay.io/biocontainers/pymvpa |
shpc-registry automated BioContainers addition for pymvpa |
ccache-swig, nib-conform, nib-dicomfs, nib-diff, nib-ls, nib-nifti-dx, nib-roi, nib-stats, nib-tck2trk, nib-trk2tck, parrec2nii, swig, svm-predict, svm-scale, svm-train, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config |
|
GITHUB
|
quay.io/biocontainers/pymzml |
shpc-registry automated BioContainers addition for pymzml |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/pynacl |
shpc-registry automated BioContainers addition for pynacl |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/pynast |
shpc-registry automated BioContainers addition for pynast |
pynast, aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info, opal_wrapper, orte-clean, orte-info, orte-server |
|
GITHUB
|
quay.io/biocontainers/pynnotator |
shpc-registry automated BioContainers addition for pynnotator |
distro, pynnotator, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/pynteny |
singularity registry hpc automated addition for pynteny |
csv-import, ipython3.10, orc-memory, orc-scan, pyfastx, pynteny, pysemver, streamlit, streamlit.cmd, timezone-dump, watchmedo, orc-contents, orc-metadata, orc-statistics, plasma-store-server, plasma_store, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, cmark, jupyter-kernel, jupyter-kernelspec, jupyter-run, curve_keygen, ipython3, ipython, jupyter-trust, prodigal, jupyter, jupyter-migrate |
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GITHUB
|
quay.io/biocontainers/pyomero-upload |
shpc-registry automated BioContainers addition for pyomero-upload |
omero, omero.bat, setpythonpath.bat, slice2py, winconfig.bat, futurize, pasteurize, f2py3.7, chardetect, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
|
GITHUB
|
quay.io/biocontainers/pyomo |
shpc-registry automated BioContainers addition for pyomo |
2to3-3.4, OSSolverService, PyomoOSSolverService, checkCopyright, checkcopyright, computeconf, dispatch_srvr, easy_install-3.4, idle3.4, kill_pyro_mip_servers, launch_pyro_mip_servers, lbin, lpython, phsolverserver, pydoc3.4, pyomo, pyomo_ns, pyomo_nsc, pyomo_old, pyomo_python, pypi_downloads, pyro_mip_server, python3.4, python3.4-config, python3.4m, python3.4m-config, pyutilib_test_driver, pyvenv-3.4, readsol, replaceCopyright, replacecopyright, results_schema, runbenders, runef, runph, test.pyomo, test.pyutilib, nosetests, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config, pyvenv |
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GITHUB
|
quay.io/biocontainers/pyopal |
singularity registry hpc automated addition for pyopal |
archspec, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/pyopenms |
shpc-registry automated BioContainers addition for pyopenms |
svm-predict, svm-scale, svm-train, CreateDOMDocument, DOMCount, DOMPrint, EnumVal, MemParse, PParse, PSVIWriter |
|
GITHUB
|
quay.io/biocontainers/pyopt |
shpc-registry automated BioContainers addition for pyopt |
mpichversion, mpivars, parkill, hydra_nameserver, hydra_persist, hydra_pmi_proxy, mpiexec.hydra, mpifort, mpic++, mpicc |
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GITHUB
|
quay.io/biocontainers/pypairs |
shpc-registry automated BioContainers addition for pypairs |
cyclone, sandbag, numba, pycc, natsort, tqdm, f2py3.8, h5clear, h5format_convert, h5watch, h5fc, gif2h5 |
|
GITHUB
|
quay.io/biocontainers/pypeflow |
shpc-registry automated BioContainers addition for pypeflow |
heartbeat-wrapper, pwatcher-main, pwatcher-pypeflow-example, futurize, pasteurize, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/pypgatk |
shpc-registry automated BioContainers addition for pypgatk |
epylint, isort, isort-identify-imports, pylint, pypgatk_cli, pypgatk_cli.py, pyreverse, symilar, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, chardetect |
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GITHUB
|
quay.io/biocontainers/pypgx |
shpc-registry automated BioContainers addition for pypgx |
fuc, pypgx, tabulate, natsort, fonttools, pyftmerge, pyftsubset, ttx, brotli, xslt-config, xsltproc, jaotc |
|
GITHUB
|
quay.io/biocontainers/pypints |
shpc-registry automated BioContainers addition for pypints |
pints_boundary_extender, pints_caller, pints_normalizer, pints_visualizer, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, fasta-sanitize.pl, shiftBed, plot-ampliconstats, annotateBed |
|
GITHUB
|
quay.io/biocontainers/pypiper |
shpc-registry automated BioContainers addition for pypiper |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/pyplink |
singularity registry hpc automated addition for pyplink |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/pypolca |
singularity registry hpc automated addition for pypolca |
pypolca, split_ref_by_bai_datasize.py, vcfnullgenofields, vcfwave, sam_add_rg.pl, update_version.sh, tabix++, bamleftalign, coverage_to_regions.py, fasta_generate_regions.py, freebayes-parallel, generate_freebayes_region_scripts.sh, freebayes, abba-baba, bFst, bed2region, bgziptabix, dumpContigsFromHeader, genotypeSummary, hapLrt, iHS, meltEHH, normalize-iHS, pFst, pVst, permuteGPAT++, permuteSmooth, plotHaps, popStats |
|
GITHUB
|
quay.io/biocontainers/pypore |
shpc-registry automated BioContainers addition for pypore |
filterfiles.py, pypore_batch_csv.py, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/pyprophet |
shpc-registry automated BioContainers addition for pyprophet |
|
|
GITHUB
|
quay.io/biocontainers/pyqi |
shpc-registry automated BioContainers addition for pyqi |
pyqi, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/pyquant-ms |
shpc-registry automated BioContainers addition for pyquant-ms |
fastadigest.py, fastadigeststats.py, fastxTrimmer.py, featureCollapser.py, fetchOrfs.py, incorporateGFF.py, incorporateVCF.py, intersectFiles.py, junctionalReads.py, proteinInference.py, ptmSummary.py, pyQuant, f2py2, f2py2.7, xslt-config, xsltproc, python2-config, python2.7-config, python2, python2.7, idle, python-config |
|
GITHUB
|
quay.io/biocontainers/pyquery |
shpc-registry automated BioContainers addition for pyquery |
easy_install-2.7, xslt-config, xsltproc, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/pyrad |
shpc-registry automated BioContainers addition for pyrad |
pyrad, vsearch, muscle, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config |
|
GITHUB
|
quay.io/biocontainers/pyranges |
shpc-registry automated BioContainers addition for pyranges |
tabulate, natsort, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/pyrle |
shpc-registry automated BioContainers addition for pyrle |
tabulate, natsort, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config |
|
GITHUB
|
quay.io/biocontainers/pyrodigal-gv |
singularity registry hpc automated addition for pyrodigal-gv |
archspec, pyrodigal, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/pyrodigal |
shpc-registry automated BioContainers addition for pyrodigal |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/pyroe |
singularity registry hpc automated addition for pyroe |
h5delete, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, pyroe, aec, scanpy, tabulate, numba, pycc, natsort, fonttools, pyftmerge, pyftsubset, ttx, normalizer, tqdm, brotli, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed |
|
GITHUB
|
quay.io/biocontainers/pyrovelocity |
singularity registry hpc automated addition for pyrovelocity |
fits2bitmap, fitscheck, fitsdiff, fitsheader, fitsinfo, jlpm, jupyter-lab, jupyter-labextension, jupyter-labhub, jupyter-nbclassic, jupyter-nbclassic-bundlerextension, jupyter-nbclassic-extension, jupyter-nbclassic-serverextension, jupyter-server, keyring, loompy, pkginfo, poetry, pyjson5, pyrovelocity, samp_hub, showtable, volint, wcslint, wsdump, jupyter-execute, jupyter-dejavu, send2trash, scanpy, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, google-oauthlib-tool, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, cmark, jupyter-nbconvert, doesitcache, jupyter-kernel, jupyter-kernelspec, jupyter-run, pybabel, tensorboard, curve_keygen, ipython3, ipython, numba, pycc |
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GITHUB
|
quay.io/biocontainers/pyrpipe |
shpc-registry automated BioContainers addition for pyrpipe |
cairosvg, pyrpipe, pyrpipe_diagnostic, weasyprint, multiqc, get_objgraph, undill, coloredlogs, humanfriendly, markdown_py, futurize, pasteurize, chardetect, f2py3.9 |
|
GITHUB
|
quay.io/biocontainers/pysais |
singularity registry hpc automated addition for pysais |
cpuinfo, h5fuse.sh, h5delete, pt2to3, ptdump, ptrepack, pttree, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp, h5perf_serial, h5redeploy, h5repack, h5repart |
|
GITHUB
|
quay.io/biocontainers/pysam |
shpc-registry automated BioContainers addition for pysam |
color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m |
|
GITHUB
|
quay.io/biocontainers/pysamstats |
shpc-registry automated BioContainers addition for pysamstats |
pysamstats, pt2to3, ptdump, ptrepack, pttree, mirror_server, mirror_server_stop, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6 |
|
GITHUB
|
quay.io/biocontainers/pyscaf |
shpc-registry automated BioContainers addition for pyscaf |
FastaIndex, fasta_stats, pyScaf, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/pyscenic |
singularity registry hpc automated addition for pyscenic |
arboreto_with_multiprocessing.py, checksum-profile, csv2loom, db2feather, elastishadow, gmt2regions, invertdb, protoc-27.5.0, pyscenic, loompy, get_gprof, dask, dask-scheduler, dask-ssh, dask-worker, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, h5tools_test_utils, elasticurl, elasticurl_cpp, elastipubsub, get_objgraph, undill, csv-import, orc-memory, orc-scan, timezone-dump, bokeh, h5fuse.sh, orc-contents, orc-metadata, orc-statistics |
|
GITHUB
|
quay.io/biocontainers/pyseer |
shpc-registry automated BioContainers addition for pyseer |
annotate_hits_pyseer, enet_predict_pyseer, phandango_mapper, pyseer, scree_plot_pyseer, similarity_pyseer, square_mash, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical, bam2bed_sge, bam2bed_sge-float128 |
|
GITHUB
|
quay.io/biocontainers/pyseq-align |
shpc-registry automated BioContainers addition for pyseq-align |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/pysftp |
shpc-registry automated BioContainers addition for pysftp |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/pyslim |
shpc-registry automated BioContainers addition for pyslim |
kastore, msp, mspms, tskit, jsonschema, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7 |
|
GITHUB
|
quay.io/biocontainers/pyslow5 |
shpc-registry automated BioContainers addition for pyslow5 |
x86_64-conda_cos7-linux-gnu-ld, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/pysnptools |
shpc-registry automated BioContainers addition for pysnptools |
f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/pyspoa |
shpc-registry automated BioContainers addition for pyspoa |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/pysradb |
shpc-registry automated BioContainers addition for pysradb |
pysradb, xml2-config.bak, normalizer, tqdm, xslt-config, xsltproc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1 |
|
GITHUB
|
quay.io/biocontainers/pysvg |
shpc-registry automated BioContainers addition for pysvg |
easy_install-2.7, xslt-config, xsltproc, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/pysvmlight |
shpc-registry automated BioContainers addition for pysvmlight |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/pytabix |
shpc-registry automated BioContainers addition for pytabix |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/pytables |
shpc-registry automated BioContainers addition for pytables |
conv-template, from-template, pt2to3, ptdump, ptrepack, pttree, 2to3-3.6, idle3.6, pydoc3.6, python3.6 |
|
GITHUB
|
quay.io/biocontainers/pytaxonkit |
shpc-registry automated BioContainers addition for pytaxonkit |
taxonkit, py.test, pytest, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/pyteomics |
shpc-registry automated BioContainers addition for pyteomics |
xml2-config.bak, fonttools, pyftmerge, pyftsubset, ttx, brotli, xslt-config, xsltproc, f2py3.10, opj_compress |
|
GITHUB
|
quay.io/biocontainers/pytest-cov |
shpc-registry automated BioContainers addition for pytest-cov |
2to3-3.4, coverage-3.4, coverage3, easy_install-3.4, idle3.4, pydoc3.4, python3.4, python3.4-config, python3.4m, python3.4m-config, pyvenv-3.4, coverage, py.test, pytest, tclsh8.5, wish8.5, pyvenv |
|
GITHUB
|
quay.io/biocontainers/pytest-marks |
shpc-registry automated BioContainers addition for pytest-marks |
easy_install-3.6, py.test, pytest, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config |
|
GITHUB
|
quay.io/biocontainers/pytest-mock |
shpc-registry automated BioContainers addition for pytest-mock |
pbr, easy_install-3.6, py.test, pytest, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m |
|
GITHUB
|
quay.io/biocontainers/pytest-mpl |
shpc-registry automated BioContainers addition for pytest-mpl |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/pytest-timeout |
shpc-registry automated BioContainers addition for pytest-timeout |
py.test-3.5, easy_install-3.5, py.test, pytest, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config |
|
GITHUB
|
quay.io/biocontainers/pytest-workflow |
shpc-registry automated BioContainers addition for pytest-workflow |
py.test, pytest, jsonschema, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config |
|
GITHUB
|
quay.io/biocontainers/pytest-xdist |
shpc-registry automated BioContainers addition for pytest-xdist |
easy_install-3.6, py.test, pytest, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config |
|
GITHUB
|
quay.io/biocontainers/pythomics |
shpc-registry automated BioContainers addition for pythomics |
fastadigest.py, fastadigeststats.py, fastxTrimmer.py, featureCollapser.py, fetchOrfs.py, incorporateGFF.py, incorporateVCF.py, intersectFiles.py, junctionalReads.py, proteinInference.py, ptmSummary.py, xslt-config, xsltproc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/python-bioext |
shpc-registry automated BioContainers addition for python-bioext |
bam2fna, bam2msa, bamclip, bealign, clipedge, consensus, msa2bam, seqmerge, translate, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/python-bioformats |
shpc-registry automated BioContainers addition for python-bioformats |
jpackage, jp.py, cups-config, ippeveprinter, ipptool, futurize, pasteurize, f2py3.10, jfr, aserver |
|
GITHUB
|
quay.io/biocontainers/python-chado |
shpc-registry automated BioContainers addition for python-chado |
chakin, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
|
GITHUB
|
quay.io/biocontainers/python-cluster |
shpc-registry automated BioContainers addition for python-cluster |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/python-codon-tables |
shpc-registry automated BioContainers addition for python-codon-tables |
2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/python-consensuscore |
shpc-registry automated BioContainers addition for python-consensuscore |
|
|
GITHUB
|
quay.io/biocontainers/python-consensuscore2 |
shpc-registry automated BioContainers addition for python-consensuscore2 |
f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/python-crypt4gh |
singularity registry hpc automated addition for python-crypt4gh |
crypt4gh, crypt4gh-keygen, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/python-dateutil |
shpc-registry automated BioContainers addition for python-dateutil |
2to3-3.4, easy_install-3.4, idle3.4, pydoc3.4, python3.4, python3.4-config, python3.4m, python3.4m-config, pyvenv-3.4, tclsh8.5, wish8.5, pyvenv |
|
GITHUB
|
quay.io/biocontainers/python-edlib |
shpc-registry automated BioContainers addition for python-edlib |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/python-eel |
shpc-registry automated BioContainers addition for python-eel |
eel, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/python-fakemp |
shpc-registry automated BioContainers addition for python-fakemp |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/python-goenrichment |
shpc-registry automated BioContainers addition for python-goenrichment |
goenrich, goenrich_createdb, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc |
|
GITHUB
|
quay.io/biocontainers/python-hivclustering |
shpc-registry automated BioContainers addition for python-hivclustering |
TNS, bam2fna, bam2msa, bamclip, bealign, ccache-swig, clipedge, consensus, hivnetworkannotate, hivnetworkcsv, msa2bam, seqmerge, swig, translate, f2py3.6, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, 2to3-3.6, idle3.6 |
|
GITHUB
|
quay.io/biocontainers/python-hppy |
shpc-registry automated BioContainers addition for python-hppy |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/python-htsget |
shpc-registry automated BioContainers addition for python-htsget |
htsget, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/python-hyphy-python |
shpc-registry automated BioContainers addition for python-hyphy-python |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/python-igraph |
shpc-registry automated BioContainers addition for python-igraph |
igraph, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5 |
|
GITHUB
|
quay.io/biocontainers/python-intervaltree |
shpc-registry automated BioContainers addition for python-intervaltree |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/python-levenshtein |
shpc-registry automated BioContainers addition for python-levenshtein |
nosetests, cygdb, cython, cythonize, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config |
|
GITHUB
|
quay.io/biocontainers/python-libsbml |
shpc-registry automated BioContainers addition for python-libsbml |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/python-magic |
shpc-registry automated BioContainers addition for python-magic |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/python-mailund-newick |
shpc-registry automated BioContainers addition for python-mailund-newick |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/python-monovar |
singularity registry hpc automated addition for python-monovar |
monovar.py, fasta-sanitize.pl, plot-ampliconstats, brotli, normalizer, f2py3.10, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim, wgsim_eval.pl, samtools |
|
GITHUB
|
quay.io/biocontainers/python-msgpack |
shpc-registry automated BioContainers addition for python-msgpack |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/python-newick |
shpc-registry automated BioContainers addition for python-newick |
2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/python-nextflow |
singularity registry hpc automated addition for python-nextflow |
nextflow, nextflow.bak, jpackage, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd, df, dir, dircolors, dirname, du, echo |
|
GITHUB
|
quay.io/biocontainers/python-omero |
shpc-registry automated BioContainers addition for python-omero |
omero, omero.bat, setpythonpath.bat, slice2py, winconfig.bat, futurize, pasteurize, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/python-rnacentral |
shpc-registry automated BioContainers addition for python-rnacentral |
rnacentral.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/python-sortedcontainers |
shpc-registry automated BioContainers addition for python-sortedcontainers |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/python-tripal |
shpc-registry automated BioContainers addition for python-tripal |
|
|
GITHUB
|
quay.io/biocontainers/python-weblogo |
shpc-registry automated BioContainers addition for python-weblogo |
transformseq, weblogo, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config |
|
GITHUB
|
quay.io/biocontainers/python-wget |
shpc-registry automated BioContainers addition for python-wget |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/python |
shpc-registry automated BioContainers addition for python |
|
|
GITHUB
|
quay.io/biocontainers/python_circos |
singularity registry hpc automated addition for python_circos |
fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/pythoncyc |
singularity registry hpc automated addition for pythoncyc |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/pythonnet |
shpc-registry automated BioContainers addition for pythonnet |
monograph, nunit-console, nunit-console2, nunit-console4, prj2make, mono-package-runtime, sgen-grep-binprot, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr |
|
GITHUB
|
quay.io/biocontainers/pythonpy |
shpc-registry automated BioContainers addition for pythonpy |
py, py2, py2.7, pycompleter, pycompleter2, pycompleter2.7, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/pytransaln |
singularity registry hpc automated addition for pytransaln |
pytransaln, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/pytrf |
singularity registry hpc automated addition for pytrf |
pytrf, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config |
|
GITHUB
|
quay.io/biocontainers/pytriangle |
shpc-registry automated BioContainers addition for pytriangle |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/pytrimal |
singularity registry hpc automated addition for pytrimal |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/pytximport |
singularity registry hpc automated addition for pytximport |
pytximport, protoc-25.3.0, numpy-config, dask, h5tools_test_utils, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, dask-scheduler, dask-ssh, dask-worker, elasticurl, elasticurl_cpp, elastipubsub, h5fuse.sh, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, bokeh, gflags_completions.sh, h5delete |
|
GITHUB
|
quay.io/biocontainers/pyvcf |
shpc-registry automated BioContainers addition for pyvcf |
vcf_sample_filter.py, vcf_filter.py, vcf_melt, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m |
|
GITHUB
|
quay.io/biocontainers/pyvcf3 |
singularity registry hpc automated addition for pyvcf3 |
vcf_sample_filter.py, vcf_filter.py, vcf_melt, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/pyvolve |
shpc-registry automated BioContainers addition for pyvolve |
conv-template, from-template, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
|
GITHUB
|
quay.io/biocontainers/pywdl |
shpc-registry automated BioContainers addition for pywdl |
wdl, wdl2dot, xtermcolor, py.test, pytest, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/pywfa |
singularity registry hpc automated addition for pywfa |
|
|
GITHUB
|
quay.io/biocontainers/pywgsim |
singularity registry hpc automated addition for pywgsim |
pywgsim, plac_runner.py, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/pyx |
shpc-registry automated BioContainers addition for pyx |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/qax |
shpc-registry automated BioContainers addition for qax |
qax, zip, zipcmp, zipmerge, ziptool |
|
GITHUB
|
quay.io/biocontainers/qcat |
shpc-registry automated BioContainers addition for qcat |
qcat, qcat-eval, qcat-eval-truth, qcat-roc, minimap2.py, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7 |
|
GITHUB
|
quay.io/biocontainers/qcli |
shpc-registry automated BioContainers addition for qcli |
qcli_make_rst, qcli_make_script, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/qcumber |
shpc-registry automated BioContainers addition for qcumber |
QCumber-2, kraken, kraken-build, kraken-filter, kraken-mpa-report, kraken-report, kraken-translate, ktClassifyBLAST, ktGetContigMagnitudes, ktGetLCA, ktGetLibPath, ktGetTaxIDFromAcc, ktGetTaxInfo, ktImportBLAST, ktImportDiskUsage, ktImportEC, ktImportFCP |
|
GITHUB
|
quay.io/biocontainers/qfilt |
shpc-registry automated BioContainers addition for qfilt |
qfilt |
|
GITHUB
|
quay.io/biocontainers/qgrs-cpp |
shpc-registry automated BioContainers addition for qgrs-cpp |
qgrs |
|
GITHUB
|
quay.io/biocontainers/qhery |
singularity registry hpc automated addition for qhery |
lofreq, lofreq2_call_pparallel.py, lofreq2_indel_ovlp.py, lofreq2_somatic.py, lofreq2_vcfplot.py, nextclade, qhery, gff2gff.py, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl, sort-table, spdi2tbl, split-at-intron, tbl2xml, transmute.Linux |
|
GITHUB
|
quay.io/biocontainers/qhull |
shpc-registry automated BioContainers addition for qhull |
qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox |
|
GITHUB
|
quay.io/biocontainers/qiime-default-reference |
shpc-registry automated BioContainers addition for qiime-default-reference |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/qiime |
shpc-registry automated BioContainers addition for qiime |
|
|
GITHUB
|
quay.io/biocontainers/qiimetomaaslin |
shpc-registry automated BioContainers addition for qiimetomaaslin |
qiimeToMaaslin.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/qiskit-xyz2pdb |
singularity registry hpc automated addition for qiskit-xyz2pdb |
qiskit-xyz2pdb, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/qorts |
shpc-registry automated BioContainers addition for qorts |
qorts, qortsGenMultiQC.R, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/qsignature |
shpc-registry automated BioContainers addition for qsignature |
qsignature, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/qtip |
shpc-registry automated BioContainers addition for qtip |
qtip, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/qtlseq |
shpc-registry automated BioContainers addition for qtlseq |
qtlplot, qtlseq, snpEff, trimmomatic, gff2gff.py, qualfa2fq.pl, xa2multi.pl, bwa, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl |
|
GITHUB
|
quay.io/biocontainers/quake |
shpc-registry automated BioContainers addition for quake |
build_bithash, correct, correct_stats, count-kmers, count-qmers, count_qmers, cov_model.py, cov_model.r, cov_model_qmer.r, kmer_hist.r, quake.py, reduce-kmers, reduce-qmers, trim, jellyfish, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/qualimap |
shpc-registry automated BioContainers addition for qualimap |
qualimap, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/quantiprot |
shpc-registry automated BioContainers addition for quantiprot |
f2py3.8, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/quantms-utils |
singularity registry hpc automated addition for quantms-utils |
deeplc, deeplc-gui, fasta2speclib, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, helpviewer, img2png, img2py, img2xpm, mokapot, ms2pip, ms2rescore, ms2rescore-gui, ms2rescore-report, parse_sdrf, progressbar, psm_utils, pyaml, pycrust, pyshell, pyslices, pyslicesshell, pywxrc, quantmsutilsc, triqler, wx-config, wxdemo, wxdocs, wxget, wxrc, wxrc-3.1, cpuinfo, svm-predict, svm-scale, svm-train, xgboost, plasma-store-server, plasma_store, import_pb_to_tensorboard, markdown-it, CreateDOMDocument, DOMCount, DOMPrint, EnumVal, MemParse, PParse, PSVIWriter, Redirect, SAX2Count, SAX2Print, SAXCount, SAXPrint, SCMPrint, SEnumVal, StdInParse, XInclude |
|
GITHUB
|
quay.io/biocontainers/quantpi |
singularity registry hpc automated addition for quantpi |
add_metadata_tree.py, alpha_diversity.py, beta_diversity.py, bracken, bracken-build, breadth_depth.py, combine_bracken_outputs.py, combine_kreports.py, combine_mpa.py, consensus.py, consensus_aDNA.py, coverm, dashing, est_abundance.py, extract_kraken_reads.py, extract_markers.py, filter_bracken.out.py, fix_unmapped.py, generate_kmer_distribution.py, humann, humann3, humann3_databases, humann_associate, humann_barplot, humann_benchmark, humann_build_custom_database, humann_config, humann_databases, humann_genefamilies_genus_level, humann_humann1_kegg, humann_infer_taxonomy, humann_join_tables, humann_reduce_table, humann_regroup_table, humann_rename_table, humann_renorm_table, humann_rna_dna_norm, humann_split_stratified_table, humann_split_table, humann_strain_profiler, humann_test, humann_unpack_pathways, iqtree2, kmcp, kmer2read_distr, kraken2, kraken2-build, kraken2-inspect, kreport2krona.py, kreport2mpa.py, ktClassifyHits, ktImportHits, ldc-build-runtime, ldc-profdata, ldc-prune-cache, ldc2, ldmd2, make_kreport.py, make_ktaxonomy.py, merge_metaphlan_tables.py, metaphlan, metapi, phylophlan, phylophlan_draw_metagenomic, phylophlan_get_reference, phylophlan_metagenomic, phylophlan_setup_database, phylophlan_strain_finder, phylophlan_write_config_file, phylophlan_write_default_configs.sh, plot_tree_graphlan.py, poly.py, polymut.py, quantpi, read_fastx.py, remove_minimap2_duplicated_headers, rich-click, sample2markers.py, starcode, strain_transmission.py, strainphlan, readal, sambamba, statal, trimal, multiqc, rsync-ssl, stone, fastp, ktClassifyBLAST, ktGetContigMagnitudes, ktGetLCA, ktGetLibPath, ktGetTaxIDFromAcc, ktGetTaxInfo, ktImportBLAST, ktImportDiskUsage, ktImportEC, ktImportFCP, ktImportGalaxy, ktImportKrona, ktImportMETAREP-BLAST, ktImportMETAREP-EC, ktImportMGRAST, ktImportPhymmBL, ktImportRDP |
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GITHUB
|
quay.io/biocontainers/quantwiz-iq |
shpc-registry automated BioContainers addition for quantwiz-iq |
QuantWiz_IQ, QuantWiz_IQ.pl, xml_grep, xml_merge, xml_pp, xml_spellcheck, xml_split, webtidy, tidyp, htmltree, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/quasildr |
shpc-registry automated BioContainers addition for quasildr |
pybind11-config, run_graphdr.py, run_structdr.py, get_objgraph, undill, numba, pycc, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9 |
|
GITHUB
|
quay.io/biocontainers/quasirecomb |
shpc-registry automated BioContainers addition for quasirecomb |
quasirecomb, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/quasitools |
shpc-registry automated BioContainers addition for quasitools |
|
|
GITHUB
|
quay.io/biocontainers/quast |
shpc-registry automated BioContainers addition for quast |
icarus.py, metaquast, metaquast.py, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, circos, circos.exe, compile.bat, compile.make, gddiag, glimmerhmm, glimmhmm.pl, list.modules, test.modules, trainGlimmerHMM |
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GITHUB
|
quay.io/biocontainers/quatradis |
singularity registry hpc automated addition for quatradis |
basqcol, fetchseq, mixreads, quatradis.smk, readstats, simqual, simread, smalt, snakeviz, splitmates, splitreads, tradis, tradis_comparison.R, tradis_essentiality.R, trunkreads, stone, plac_runner.py, yte, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, pulptest, cbc, clp, snakemake, snakemake-bash-completion, jp.py, tabulate, py.test, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, pytest |
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GITHUB
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quay.io/biocontainers/query_phenomizer |
shpc-registry automated BioContainers addition for query_phenomizer |
|
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GITHUB
|
quay.io/biocontainers/quickbam |
singularity registry hpc automated addition for quickbam |
flagstats-quickbam, readcount-quickbam, snp-pileup-quickbam, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics |
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GITHUB
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quay.io/biocontainers/quickdeconvolution |
singularity registry hpc automated addition for quickdeconvolution |
QuickDeconvolution |
|
GITHUB
|
quay.io/biocontainers/quickmerge |
shpc-registry automated BioContainers addition for quickmerge |
merge_wrapper.py, quickmerge, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot |
|
GITHUB
|
quay.io/biocontainers/quicksect |
shpc-registry automated BioContainers addition for quicksect |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/quicksnp |
singularity registry hpc automated addition for quicksnp |
QuickSNP.py, h5delete, tjbench, aec, doesitcache, ipython3, cygdb, cython, cythonize, ipython, natsort, py.test, pytest, pygmentize, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, f2py3.10, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif |
|
GITHUB
|
quay.io/biocontainers/quicktree |
shpc-registry automated BioContainers addition for quicktree |
quicktree |
|
GITHUB
|
quay.io/biocontainers/quip |
shpc-registry automated BioContainers addition for quip |
bammd5, fastqmd5, quip, quipcat, unquip |
|
GITHUB
|
quay.io/biocontainers/quorum |
shpc-registry automated BioContainers addition for quorum |
merge_mate_pairs, quorum, quorum_create_database, quorum_error_correct_reads, split_mate_pairs, jellyfish, perl5.32.0, streamzip |
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GITHUB
|
quay.io/biocontainers/quota_anchor |
singularity registry hpc automated addition for quota_anchor |
anchorwave, anchorwave_avx2, anchorwave_avx512, anchorwave_sse2, anchorwave_sse4.1, gffread, gmap.nosimd, gmap_cat, gmapl.nosimd, gsnap.nosimd, gsnapl.nosimd, indexdb_cat, pal2nal.pl, quota_Anchor, trindex, atoiindex, cmetindex, cpuid, dbsnp_iit, ensembl_genes, fa_coords, get-genome, gff3_genes, gff3_introns, gff3_splicesites, gmap.sse42, gmap_build, gmap_process, gmapindex, gmapl, gmapl.sse42, gsnap, gsnap.sse42, gsnapl, gsnapl.sse42, gtf_genes, gtf_introns, gtf_splicesites, gtf_transcript_splicesites |
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GITHUB
|
quay.io/biocontainers/r-abdiv |
singularity registry hpc automated addition for r-abdiv |
|
|
GITHUB
|
quay.io/biocontainers/r-abind |
shpc-registry automated BioContainers addition for r-abind |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-acidbase |
shpc-registry automated BioContainers addition for r-acidbase |
|
|
GITHUB
|
quay.io/biocontainers/r-acidcli |
shpc-registry automated BioContainers addition for r-acidcli |
|
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GITHUB
|
quay.io/biocontainers/r-acidexperiment |
shpc-registry automated BioContainers addition for r-acidexperiment |
|
|
GITHUB
|
quay.io/biocontainers/r-acidgenerics |
shpc-registry automated BioContainers addition for r-acidgenerics |
|
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GITHUB
|
quay.io/biocontainers/r-acidgenomes |
shpc-registry automated BioContainers addition for r-acidgenomes |
|
|
GITHUB
|
quay.io/biocontainers/r-acidgsea |
shpc-registry automated BioContainers addition for r-acidgsea |
pandoc |
|
GITHUB
|
quay.io/biocontainers/r-acidmarkdown |
shpc-registry automated BioContainers addition for r-acidmarkdown |
|
|
GITHUB
|
quay.io/biocontainers/r-acidplots |
shpc-registry automated BioContainers addition for r-acidplots |
|
|
GITHUB
|
quay.io/biocontainers/r-acidplyr |
shpc-registry automated BioContainers addition for r-acidplyr |
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GITHUB
|
quay.io/biocontainers/r-acidsinglecell |
shpc-registry automated BioContainers addition for r-acidsinglecell |
|
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GITHUB
|
quay.io/biocontainers/r-ada |
shpc-registry automated BioContainers addition for r-ada |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-ade4 |
shpc-registry automated BioContainers addition for r-ade4 |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-adegenet |
shpc-registry automated BioContainers addition for r-adegenet |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-adephylo |
shpc-registry automated BioContainers addition for r-adephylo |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-agricolae |
shpc-registry automated BioContainers addition for r-agricolae |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-ahocorasicktrie |
shpc-registry automated BioContainers addition for r-ahocorasicktrie |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-airr |
shpc-registry automated BioContainers addition for r-airr |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-alakazam |
shpc-registry automated BioContainers addition for r-alakazam |
glpsol |
|
GITHUB
|
quay.io/biocontainers/r-algdesign |
shpc-registry automated BioContainers addition for r-algdesign |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-amap |
shpc-registry automated BioContainers addition for r-amap |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-ampir |
shpc-registry automated BioContainers addition for r-ampir |
|
|
GITHUB
|
quay.io/biocontainers/r-ampliconduo |
shpc-registry automated BioContainers addition for r-ampliconduo |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-ampvis |
shpc-registry automated BioContainers addition for r-ampvis |
|
|
GITHUB
|
quay.io/biocontainers/r-ampvis2 |
shpc-registry automated BioContainers addition for r-ampvis2 |
parsort, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh, env_parallel.pdksh |
|
GITHUB
|
quay.io/biocontainers/r-anndata |
shpc-registry automated BioContainers addition for r-anndata |
|
|
GITHUB
|
quay.io/biocontainers/r-annotables |
shpc-registry automated BioContainers addition for r-annotables |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-aod |
shpc-registry automated BioContainers addition for r-aod |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-aptreeshape |
shpc-registry automated BioContainers addition for r-aptreeshape |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-archr |
singularity registry hpc automated addition for r-archr |
pandoc |
|
GITHUB
|
quay.io/biocontainers/r-argparse |
shpc-registry automated BioContainers addition for r-argparse |
easy_install-3.6, uconv, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6 |
|
GITHUB
|
quay.io/biocontainers/r-argparser |
shpc-registry automated BioContainers addition for r-argparser |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-argumentcheck |
shpc-registry automated BioContainers addition for r-argumentcheck |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-aroma.affymetrix |
shpc-registry automated BioContainers addition for r-aroma.affymetrix |
|
|
GITHUB
|
quay.io/biocontainers/r-aroma.apd |
shpc-registry automated BioContainers addition for r-aroma.apd |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-aroma.core |
shpc-registry automated BioContainers addition for r-aroma.core |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-ash |
shpc-registry automated BioContainers addition for r-ash |
pango-querymodules, uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-asics |
shpc-registry automated BioContainers addition for r-asics |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-autospill |
shpc-registry automated BioContainers addition for r-autospill |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-azimuth |
singularity registry hpc automated addition for r-azimuth |
pandoc-lua, h5tools_test_utils, pandoc-server, h5fuse.sh, h5delete, pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, glpsol, hb-info, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench, h5clear, h5format_convert |
|
GITHUB
|
quay.io/biocontainers/r-base |
shpc-registry automated BioContainers addition for r-base |
|
|
GITHUB
|
quay.io/biocontainers/r-base64 |
shpc-registry automated BioContainers addition for r-base64 |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-basejump |
shpc-registry automated BioContainers addition for r-basejump |
wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-batch |
shpc-registry automated BioContainers addition for r-batch |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-batchjobs |
shpc-registry automated BioContainers addition for r-batchjobs |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-bbmisc |
shpc-registry automated BioContainers addition for r-bbmisc |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-bbmle |
shpc-registry automated BioContainers addition for r-bbmle |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-bc3net |
shpc-registry automated BioContainers addition for r-bc3net |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-bcbiobase |
shpc-registry automated BioContainers addition for r-bcbiobase |
|
|
GITHUB
|
quay.io/biocontainers/r-bcbiornaseq |
shpc-registry automated BioContainers addition for r-bcbiornaseq |
pandoc |
|
GITHUB
|
quay.io/biocontainers/r-bcbiosinglecell |
shpc-registry automated BioContainers addition for r-bcbiosinglecell |
pandoc |
|
GITHUB
|
quay.io/biocontainers/r-beanplot |
shpc-registry automated BioContainers addition for r-beanplot |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-bedr |
shpc-registry automated BioContainers addition for r-bedr |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-bedtoolsr |
singularity registry hpc automated addition for r-bedtoolsr |
shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap, groupBy, intersectBed, linksBed, mapBed, maskFastaFromBed, mergeBed, multiBamCov |
|
GITHUB
|
quay.io/biocontainers/r-beyondcell |
singularity registry hpc automated addition for r-beyondcell |
geosop, geos-config, numba, pycc, f2py3.6, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, glpsol, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/r-bh |
shpc-registry automated BioContainers addition for r-bh |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-biasedurn |
shpc-registry automated BioContainers addition for r-biasedurn |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-biclust |
shpc-registry automated BioContainers addition for r-biclust |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-biganalytics |
shpc-registry automated BioContainers addition for r-biganalytics |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-biglm |
shpc-registry automated BioContainers addition for r-biglm |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-bigmemory |
shpc-registry automated BioContainers addition for r-bigmemory |
|
|
GITHUB
|
quay.io/biocontainers/r-bigmemory.sri |
shpc-registry automated BioContainers addition for r-bigmemory.sri |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-bio3d |
shpc-registry automated BioContainers addition for r-bio3d |
|
|
GITHUB
|
quay.io/biocontainers/r-biodb |
shpc-registry automated BioContainers addition for r-biodb |
|
|
GITHUB
|
quay.io/biocontainers/r-biom |
shpc-registry automated BioContainers addition for r-biom |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-biomark |
shpc-registry automated BioContainers addition for r-biomark |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-biomartr |
shpc-registry automated BioContainers addition for r-biomartr |
|
|
GITHUB
|
quay.io/biocontainers/r-bioverbs |
shpc-registry automated BioContainers addition for r-bioverbs |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-bipartite |
shpc-registry automated BioContainers addition for r-bipartite |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-bisquerna |
shpc-registry automated BioContainers addition for r-bisquerna |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-bit |
shpc-registry automated BioContainers addition for r-bit |
|
|
GITHUB
|
quay.io/biocontainers/r-bit64 |
shpc-registry automated BioContainers addition for r-bit64 |
pango-querymodules, pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-blockfest |
shpc-registry automated BioContainers addition for r-blockfest |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-blockmodeling |
shpc-registry automated BioContainers addition for r-blockmodeling |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-bma |
shpc-registry automated BioContainers addition for r-bma |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-breakaway |
shpc-registry automated BioContainers addition for r-breakaway |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/r-brio |
shpc-registry automated BioContainers addition for r-brio |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-bseqsc |
shpc-registry automated BioContainers addition for r-bseqsc |
|
|
GITHUB
|
quay.io/biocontainers/r-buencolors |
singularity registry hpc automated addition for r-buencolors |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/r-bulkanalyser |
singularity registry hpc automated addition for r-bulkanalyser |
qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, udunits2, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums, projsync, gdal-config, gdal_contour, gdal_grid, gdal_rasterize, gdal_translate, gdaladdo, gdalbuildvrt |
|
GITHUB
|
quay.io/biocontainers/r-calder2 |
shpc-registry automated BioContainers addition for r-calder2 |
calder, dask, dask scheduler, dask ssh, dask worker, cooler, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix |
|
GITHUB
|
quay.io/biocontainers/r-calibrate |
shpc-registry automated BioContainers addition for r-calibrate |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-canopy |
shpc-registry automated BioContainers addition for r-canopy |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-car |
shpc-registry automated BioContainers addition for r-car |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-caroline |
shpc-registry automated BioContainers addition for r-caroline |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-cate |
shpc-registry automated BioContainers addition for r-cate |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-catools |
shpc-registry automated BioContainers addition for r-catools |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-ccqtl |
singularity registry hpc automated addition for r-ccqtl |
ccqtl, hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/r-ccube |
shpc-registry automated BioContainers addition for r-ccube |
|
|
GITHUB
|
quay.io/biocontainers/r-cellassign |
shpc-registry automated BioContainers addition for r-cellassign |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-cellosaurus |
singularity registry hpc automated addition for r-cellosaurus |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/r-cghflasso |
shpc-registry automated BioContainers addition for r-cghflasso |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-cghseg |
singularity registry hpc automated addition for r-cghseg |
|
|
GITHUB
|
quay.io/biocontainers/r-changepoint |
shpc-registry automated BioContainers addition for r-changepoint |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-chbutils |
shpc-registry automated BioContainers addition for r-chbutils |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-checkmate |
shpc-registry automated BioContainers addition for r-checkmate |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-checkpoint |
shpc-registry automated BioContainers addition for r-checkpoint |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-chord |
singularity registry hpc automated addition for r-chord |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, tjbench, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/r-chromium |
singularity registry hpc automated addition for r-chromium |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/r-chromvarmotifs |
singularity registry hpc automated addition for r-chromvarmotifs |
|
|
GITHUB
|
quay.io/biocontainers/r-cimpl |
shpc-registry automated BioContainers addition for r-cimpl |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-circlize |
shpc-registry automated BioContainers addition for r-circlize |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-classdiscovery |
shpc-registry automated BioContainers addition for r-classdiscovery |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-cleangeostreamr |
singularity registry hpc automated addition for r-cleangeostreamr |
bsdunzip, curate_chemical_data, curate_spatial_data, fitsverify, gdal_footprint, minigzip, minizip, pandoc-lua, protoc-25.3.0, sozip, git2, pg_amcheck, h5tools_test_utils, gdal_create, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pdfsig, pandoc-server, applygeo, bsdcat, bsdcpio, bsdtar, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_verifybackup, projsync, gdal-config, gdal_contour, gdal_grid, gdal_rasterize |
|
GITHUB
|
quay.io/biocontainers/r-clinfun |
shpc-registry automated BioContainers addition for r-clinfun |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-clustree |
singularity registry hpc automated addition for r-clustree |
pcre2posix_test, glpsol, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/r-clvalid |
shpc-registry automated BioContainers addition for r-clvalid |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-cnogpro |
shpc-registry automated BioContainers addition for r-cnogpro |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-cobrar |
singularity registry hpc automated addition for r-cobrar |
glpsol, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/r-codedepends |
shpc-registry automated BioContainers addition for r-codedepends |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-coenocliner |
shpc-registry automated BioContainers addition for r-coenocliner |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-coloc |
shpc-registry automated BioContainers addition for r-coloc |
|
|
GITHUB
|
quay.io/biocontainers/r-combinat |
shpc-registry automated BioContainers addition for r-combinat |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-compquadform |
shpc-registry automated BioContainers addition for r-compquadform |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-compute.es |
shpc-registry automated BioContainers addition for r-compute.es |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-conos |
singularity registry hpc automated addition for r-conos |
glpsol |
|
GITHUB
|
quay.io/biocontainers/r-consensustme |
shpc-registry automated BioContainers addition for r-consensustme |
|
|
GITHUB
|
quay.io/biocontainers/r-corbi |
shpc-registry automated BioContainers addition for r-corbi |
|
|
GITHUB
|
quay.io/biocontainers/r-corncob |
shpc-registry automated BioContainers addition for r-corncob |
glpsol |
|
GITHUB
|
quay.io/biocontainers/r-corpcor |
shpc-registry automated BioContainers addition for r-corpcor |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-corrplot |
shpc-registry automated BioContainers addition for r-corrplot |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-cp4p |
shpc-registry automated BioContainers addition for r-cp4p |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-crbhits |
singularity registry hpc automated addition for r-crbhits |
git2, hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/r-crisprcleanr |
shpc-registry automated BioContainers addition for r-crisprcleanr |
|
|
GITHUB
|
quay.io/biocontainers/r-crmn |
shpc-registry automated BioContainers addition for r-crmn |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-cssam |
shpc-registry automated BioContainers addition for r-cssam |
|
|
GITHUB
|
quay.io/biocontainers/r-d3heatmap |
shpc-registry automated BioContainers addition for r-d3heatmap |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-dartr |
shpc-registry automated BioContainers addition for r-dartr |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach, applygeo |
|
GITHUB
|
quay.io/biocontainers/r-data.table |
shpc-registry automated BioContainers addition for r-data.table |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-dbchip |
shpc-registry automated BioContainers addition for r-dbchip |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-ddir |
shpc-registry automated BioContainers addition for r-ddir |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-ddrtree |
shpc-registry automated BioContainers addition for r-ddrtree |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-deconstructsigs |
shpc-registry automated BioContainers addition for r-deconstructsigs |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-delaporte |
shpc-registry automated BioContainers addition for r-delaporte |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-deldir |
shpc-registry automated BioContainers addition for r-deldir |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-dendextend |
shpc-registry automated BioContainers addition for r-dendextend |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-densityclust |
shpc-registry automated BioContainers addition for r-densityclust |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-deoptimr |
shpc-registry automated BioContainers addition for r-deoptimr |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-deseqanalysis |
shpc-registry automated BioContainers addition for r-deseqanalysis |
|
|
GITHUB
|
quay.io/biocontainers/r-dgeclustering |
shpc-registry automated BioContainers addition for r-dgeclustering |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-diagram |
shpc-registry automated BioContainers addition for r-diagram |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-diffcorr |
shpc-registry automated BioContainers addition for r-diffcorr |
|
|
GITHUB
|
quay.io/biocontainers/r-digest |
shpc-registry automated BioContainers addition for r-digest |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-dimsum |
shpc-registry automated BioContainers addition for r-dimsum |
DiMSum, DiMSum.R, starcode, cutadapt, vsearch, fastqc, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, pandoc |
|
GITHUB
|
quay.io/biocontainers/r-dinamic.duo |
singularity registry hpc automated addition for r-dinamic.duo |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/r-diptest |
shpc-registry automated BioContainers addition for r-diptest |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-disco |
shpc-registry automated BioContainers addition for r-disco |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-discriminer |
shpc-registry automated BioContainers addition for r-discriminer |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-disprose |
singularity registry hpc automated addition for r-disprose |
|
|
GITHUB
|
quay.io/biocontainers/r-dnet |
shpc-registry automated BioContainers addition for r-dnet |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-docopt |
shpc-registry automated BioContainers addition for r-docopt |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-dorng |
shpc-registry automated BioContainers addition for r-dorng |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-downloader |
shpc-registry automated BioContainers addition for r-downloader |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-dowser |
singularity registry hpc automated addition for r-dowser |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/r-dpeak |
shpc-registry automated BioContainers addition for r-dpeak |
perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/r-dplyr |
shpc-registry automated BioContainers addition for r-dplyr |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-drc |
shpc-registry automated BioContainers addition for r-drc |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-dsb |
singularity registry hpc automated addition for r-dsb |
pcre2posix_test, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/r-dunn.test |
shpc-registry automated BioContainers addition for r-dunn.test |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-dwls |
shpc-registry automated BioContainers addition for r-dwls |
geosop, geos-config, glpsol |
|
GITHUB
|
quay.io/biocontainers/r-dynamictreecut |
shpc-registry automated BioContainers addition for r-dynamictreecut |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-e1071 |
shpc-registry automated BioContainers addition for r-e1071 |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-eacon |
shpc-registry automated BioContainers addition for r-eacon |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-easydifferentialgenecoexpression |
singularity registry hpc automated addition for r-easydifferentialgenecoexpression |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/r-easylift |
singularity registry hpc automated addition for r-easylift |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/r-ebimetagenomics |
shpc-registry automated BioContainers addition for r-ebimetagenomics |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-ecodist |
shpc-registry automated BioContainers addition for r-ecodist |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-eggnog |
singularity registry hpc automated addition for r-eggnog |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/r-ellipse |
shpc-registry automated BioContainers addition for r-ellipse |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-emdbook |
shpc-registry automated BioContainers addition for r-emdbook |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-emlassemblyline |
singularity registry hpc automated addition for r-emlassemblyline |
hb-info, tjbench, glpsol, jq, onig-config, pandoc |
|
GITHUB
|
quay.io/biocontainers/r-empiricalfdr.deseq2 |
shpc-registry automated BioContainers addition for r-empiricalfdr.deseq2 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-enchantr |
shpc-registry automated BioContainers addition for r-enchantr |
pandoc-server, glpsol, pandoc |
|
GITHUB
|
quay.io/biocontainers/r-enrichr |
shpc-registry automated BioContainers addition for r-enrichr |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-epic |
shpc-registry automated BioContainers addition for r-epic |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-epitrace |
singularity registry hpc automated addition for r-epitrace |
pandoc-lua, protoc-25.3.0, numpy-config, pandoc-server, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin |
|
GITHUB
|
quay.io/biocontainers/r-erah |
singularity registry hpc automated addition for r-erah |
h5fuse.sh, h5delete, zipcmp, zipmerge, ziptool, hb-info, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp, hdfed, hdfimport, hdfls, hdfpack, hdftopal, hdftor8, hdfunpac, hdiff, hdp, hrepack |
|
GITHUB
|
quay.io/biocontainers/r-exactranktests |
shpc-registry automated BioContainers addition for r-exactranktests |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-exomedepth |
shpc-registry automated BioContainers addition for r-exomedepth |
|
|
GITHUB
|
quay.io/biocontainers/r-extrafont |
shpc-registry automated BioContainers addition for r-extrafont |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-extrafontdb |
shpc-registry automated BioContainers addition for r-extrafontdb |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-eztune |
singularity registry hpc automated addition for r-eztune |
hb-info, tjbench, pandoc |
|
GITHUB
|
quay.io/biocontainers/r-facets |
shpc-registry automated BioContainers addition for r-facets |
|
|
GITHUB
|
quay.io/biocontainers/r-factominer |
shpc-registry automated BioContainers addition for r-factominer |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-fail |
shpc-registry automated BioContainers addition for r-fail |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-fastbaps |
shpc-registry automated BioContainers addition for r-fastbaps |
run_fastbaps, pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach, applygeo |
|
GITHUB
|
quay.io/biocontainers/r-fastcluster |
shpc-registry automated BioContainers addition for r-fastcluster |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-fastica |
shpc-registry automated BioContainers addition for r-fastica |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-fastmatch |
shpc-registry automated BioContainers addition for r-fastmatch |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-fastqcr |
shpc-registry automated BioContainers addition for r-fastqcr |
pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-fateid |
shpc-registry automated BioContainers addition for r-fateid |
|
|
GITHUB
|
quay.io/biocontainers/r-fda |
shpc-registry automated BioContainers addition for r-fda |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-fdrtool |
shpc-registry automated BioContainers addition for r-fdrtool |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-ff |
shpc-registry automated BioContainers addition for r-ff |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-fftwtools |
shpc-registry automated BioContainers addition for r-fftwtools |
pngcp, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail |
|
GITHUB
|
quay.io/biocontainers/r-fgwas |
shpc-registry automated BioContainers addition for r-fgwas |
parsort, perl5.32.0, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh |
|
GITHUB
|
quay.io/biocontainers/r-fields |
shpc-registry automated BioContainers addition for r-fields |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-findpython |
shpc-registry automated BioContainers addition for r-findpython |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-firebrowser |
shpc-registry automated BioContainers addition for r-firebrowser |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-fitdistrplus |
shpc-registry automated BioContainers addition for r-fitdistrplus |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-flashclust |
shpc-registry automated BioContainers addition for r-flashclust |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-flexclust |
shpc-registry automated BioContainers addition for r-flexclust |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-flexmix |
shpc-registry automated BioContainers addition for r-flexmix |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-flowr |
shpc-registry automated BioContainers addition for r-flowr |
flowr, uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-fmsb |
shpc-registry automated BioContainers addition for r-fmsb |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-fnn |
shpc-registry automated BioContainers addition for r-fnn |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-fpc |
shpc-registry automated BioContainers addition for r-fpc |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-freerange |
shpc-registry automated BioContainers addition for r-freerange |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-funr |
shpc-registry automated BioContainers addition for r-funr |
funr, pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-funrar |
shpc-registry automated BioContainers addition for r-funrar |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-futile.logger |
shpc-registry automated BioContainers addition for r-futile.logger |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-futile.options |
shpc-registry automated BioContainers addition for r-futile.options |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-future |
shpc-registry automated BioContainers addition for r-future |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-gam |
shpc-registry automated BioContainers addition for r-gam |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-gamlss.data |
shpc-registry automated BioContainers addition for r-gamlss.data |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-gamlss.dist |
shpc-registry automated BioContainers addition for r-gamlss.dist |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-gamlss |
shpc-registry automated BioContainers addition for r-gamlss |
|
|
GITHUB
|
quay.io/biocontainers/r-gap |
shpc-registry automated BioContainers addition for r-gap |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-garnett |
shpc-registry automated BioContainers addition for r-garnett |
testepsg, gdal_create, pg_standby, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, applygeo, geotifcp |
|
GITHUB
|
quay.io/biocontainers/r-gbm |
shpc-registry automated BioContainers addition for r-gbm |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-gchromvar |
singularity registry hpc automated addition for r-gchromvar |
pandoc-lua, pandoc-server, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/r-gdtools |
shpc-registry automated BioContainers addition for r-gdtools |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-geiger |
shpc-registry automated BioContainers addition for r-geiger |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-genabel.data |
shpc-registry automated BioContainers addition for r-genabel.data |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-genabel |
shpc-registry automated BioContainers addition for r-genabel |
|
|
GITHUB
|
quay.io/biocontainers/r-geneexpressionfromgeo |
singularity registry hpc automated addition for r-geneexpressionfromgeo |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/r-genemodel |
shpc-registry automated BioContainers addition for r-genemodel |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-genenet |
shpc-registry automated BioContainers addition for r-genenet |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-genometricorr |
shpc-registry automated BioContainers addition for r-genometricorr |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-genomictools.filehandler |
shpc-registry automated BioContainers addition for r-genomictools.filehandler |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-genomictools |
shpc-registry automated BioContainers addition for r-genomictools |
|
|
GITHUB
|
quay.io/biocontainers/r-geoaxe |
shpc-registry automated BioContainers addition for r-geoaxe |
geos-config, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-geomap |
shpc-registry automated BioContainers addition for r-geomap |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-george |
shpc-registry automated BioContainers addition for r-george |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/r-getopt |
shpc-registry automated BioContainers addition for r-getopt |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-getoptlong |
shpc-registry automated BioContainers addition for r-getoptlong |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-ggally |
shpc-registry automated BioContainers addition for r-ggally |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-ggalt |
shpc-registry automated BioContainers addition for r-ggalt |
nad2bin, invgeod, invproj, cs2cs, geod, proj, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail |
|
GITHUB
|
quay.io/biocontainers/r-gganatogram |
shpc-registry automated BioContainers addition for r-gganatogram |
|
|
GITHUB
|
quay.io/biocontainers/r-ggbiplot |
shpc-registry automated BioContainers addition for r-ggbiplot |
|
|
GITHUB
|
quay.io/biocontainers/r-ggcoverage |
singularity registry hpc automated addition for r-ggcoverage |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/r-ggdendro |
shpc-registry automated BioContainers addition for r-ggdendro |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-ggmsa |
shpc-registry automated BioContainers addition for r-ggmsa |
projsync, invgeod, invproj, projinfo, cct, gie, cs2cs, geod, proj |
|
GITHUB
|
quay.io/biocontainers/r-ggplot2 |
shpc-registry automated BioContainers addition for r-ggplot2 |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-ggrasp |
shpc-registry automated BioContainers addition for r-ggrasp |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-ggrepel |
shpc-registry automated BioContainers addition for r-ggrepel |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-ggsignif |
shpc-registry automated BioContainers addition for r-ggsignif |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-ggthemes |
shpc-registry automated BioContainers addition for r-ggthemes |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-giant |
shpc-registry automated BioContainers addition for r-giant |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-gkmsvm |
shpc-registry automated BioContainers addition for r-gkmsvm |
|
|
GITHUB
|
quay.io/biocontainers/r-globaloptions |
shpc-registry automated BioContainers addition for r-globaloptions |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-globals |
shpc-registry automated BioContainers addition for r-globals |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-gmd |
shpc-registry automated BioContainers addition for r-gmd |
pango-querymodules, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-gmodels |
shpc-registry automated BioContainers addition for r-gmodels |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-gmwt |
shpc-registry automated BioContainers addition for r-gmwt |
|
|
GITHUB
|
quay.io/biocontainers/r-goalie |
shpc-registry automated BioContainers addition for r-goalie |
|
|
GITHUB
|
quay.io/biocontainers/r-goeveg |
shpc-registry automated BioContainers addition for r-goeveg |
|
|
GITHUB
|
quay.io/biocontainers/r-googlevis |
shpc-registry automated BioContainers addition for r-googlevis |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-gpca |
shpc-registry automated BioContainers addition for r-gpca |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-gplots |
shpc-registry automated BioContainers addition for r-gplots |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-gprofiler |
shpc-registry automated BioContainers addition for r-gprofiler |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-gpseq |
shpc-registry automated BioContainers addition for r-gpseq |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-grain |
shpc-registry automated BioContainers addition for r-grain |
|
|
GITHUB
|
quay.io/biocontainers/r-grbase |
shpc-registry automated BioContainers addition for r-grbase |
|
|
GITHUB
|
quay.io/biocontainers/r-grimport |
shpc-registry automated BioContainers addition for r-grimport |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-gsalib |
shpc-registry automated BioContainers addition for r-gsalib |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-gsmoothr |
shpc-registry automated BioContainers addition for r-gsmoothr |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-gsubfn |
shpc-registry automated BioContainers addition for r-gsubfn |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-guilds |
shpc-registry automated BioContainers addition for r-guilds |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-gwasexacthw |
shpc-registry automated BioContainers addition for r-gwasexacthw |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-gwpcr |
shpc-registry automated BioContainers addition for r-gwpcr |
|
|
GITHUB
|
quay.io/biocontainers/r-haplo.stats |
shpc-registry automated BioContainers addition for r-haplo.stats |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-hardyweinberg |
shpc-registry automated BioContainers addition for r-hardyweinberg |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-harmony |
shpc-registry automated BioContainers addition for r-harmony |
|
|
GITHUB
|
quay.io/biocontainers/r-hdrcde |
shpc-registry automated BioContainers addition for r-hdrcde |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-hemdag |
shpc-registry automated BioContainers addition for r-hemdag |
|
|
GITHUB
|
quay.io/biocontainers/r-hgvsparser |
singularity registry hpc automated addition for r-hgvsparser |
pandoc-lua, git2, pandoc-server, hb-info, pandoc, tjbench |
|
GITHUB
|
quay.io/biocontainers/r-hierfstat |
shpc-registry automated BioContainers addition for r-hierfstat |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-histonehmm |
shpc-registry automated BioContainers addition for r-histonehmm |
pandoc |
|
GITHUB
|
quay.io/biocontainers/r-htmltools |
shpc-registry automated BioContainers addition for r-htmltools |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-htmlwidgets |
shpc-registry automated BioContainers addition for r-htmlwidgets |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-htscluster |
shpc-registry automated BioContainers addition for r-htscluster |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-htssip |
shpc-registry automated BioContainers addition for r-htssip |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-hwriter |
shpc-registry automated BioContainers addition for r-hwriter |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-ic10 |
shpc-registry automated BioContainers addition for r-ic10 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-ic10trainingdata |
shpc-registry automated BioContainers addition for r-ic10trainingdata |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-ichorcna |
shpc-registry automated BioContainers addition for r-ichorcna |
createPanelOfNormals.R, runIchorCNA.R |
|
GITHUB
|
quay.io/biocontainers/r-icluster |
shpc-registry automated BioContainers addition for r-icluster |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-idpmisc |
shpc-registry automated BioContainers addition for r-idpmisc |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-idr |
shpc-registry automated BioContainers addition for r-idr |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-immucellaimouse |
singularity registry hpc automated addition for r-immucellaimouse |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, tjbench, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/r-immunedeconv |
shpc-registry automated BioContainers addition for r-immunedeconv |
|
|
GITHUB
|
quay.io/biocontainers/r-imp4p |
shpc-registry automated BioContainers addition for r-imp4p |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-imputelcmd |
shpc-registry automated BioContainers addition for r-imputelcmd |
|
|
GITHUB
|
quay.io/biocontainers/r-inline |
shpc-registry automated BioContainers addition for r-inline |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-inlinedocs |
shpc-registry automated BioContainers addition for r-inlinedocs |
pango-querymodules, uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-intego |
shpc-registry automated BioContainers addition for r-intego |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-interpretmsspectrum |
shpc-registry automated BioContainers addition for r-interpretmsspectrum |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-intlim |
shpc-registry automated BioContainers addition for r-intlim |
pandoc-citeproc, pandoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-ipo-meta |
shpc-registry automated BioContainers addition for r-ipo-meta |
nc-config, nccopy, ncdump, ncgen, ncgen3, uconv, gif2h5, h52gif, h5c++, h5copy |
|
GITHUB
|
quay.io/biocontainers/r-ipo |
shpc-registry automated BioContainers addition for r-ipo |
|
|
GITHUB
|
quay.io/biocontainers/r-isogene |
shpc-registry automated BioContainers addition for r-isogene |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-isva |
shpc-registry automated BioContainers addition for r-isva |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-itertools |
shpc-registry automated BioContainers addition for r-itertools |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-jackstraw |
shpc-registry automated BioContainers addition for r-jackstraw |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-jetset |
singularity registry hpc automated addition for r-jetset |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/r-jsonlite |
shpc-registry automated BioContainers addition for r-jsonlite |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-kaos |
shpc-registry automated BioContainers addition for r-kaos |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-kernlab |
shpc-registry automated BioContainers addition for r-kernlab |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-kinship2 |
shpc-registry automated BioContainers addition for r-kinship2 |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-klar |
shpc-registry automated BioContainers addition for r-klar |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-km.ci |
shpc-registry automated BioContainers addition for r-km.ci |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-kmsurv |
shpc-registry automated BioContainers addition for r-kmsurv |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-knitr |
shpc-registry automated BioContainers addition for r-knitr |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-knitrbootstrap |
shpc-registry automated BioContainers addition for r-knitrbootstrap |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-kriging |
shpc-registry automated BioContainers addition for r-kriging |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-ks |
shpc-registry automated BioContainers addition for r-ks |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-lambda.r |
shpc-registry automated BioContainers addition for r-lambda.r |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-ldrtools |
shpc-registry automated BioContainers addition for r-ldrtools |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-ldweaver |
singularity registry hpc automated addition for r-ldweaver |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, tjbench, glpsol, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/r-leapp |
shpc-registry automated BioContainers addition for r-leapp |
|
|
GITHUB
|
quay.io/biocontainers/r-leaps |
shpc-registry automated BioContainers addition for r-leaps |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-learnbayes |
shpc-registry automated BioContainers addition for r-learnbayes |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-leidenbase |
shpc-registry automated BioContainers addition for r-leidenbase |
|
|
GITHUB
|
quay.io/biocontainers/r-liger |
shpc-registry automated BioContainers addition for r-liger |
numba, pycc, mirror_server, mirror_server_stop, tqdm, f2py3.10, jaotc, jdeprscan, jhsdb, jimage |
|
GITHUB
|
quay.io/biocontainers/r-linxreport |
singularity registry hpc automated addition for r-linxreport |
linxreport.R, pcre2posix_test, hb-info, tjbench, pandoc |
|
GITHUB
|
quay.io/biocontainers/r-lipidomer |
singularity registry hpc automated addition for r-lipidomer |
|
|
GITHUB
|
quay.io/biocontainers/r-lisi |
shpc-registry automated BioContainers addition for r-lisi |
|
|
GITHUB
|
quay.io/biocontainers/r-listenv |
shpc-registry automated BioContainers addition for r-listenv |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-lme4qtl |
shpc-registry automated BioContainers addition for r-lme4qtl |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-lncpipereporter |
shpc-registry automated BioContainers addition for r-lncpipereporter |
pandoc |
|
GITHUB
|
quay.io/biocontainers/r-locfdr |
shpc-registry automated BioContainers addition for r-locfdr |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-locfit |
shpc-registry automated BioContainers addition for r-locfit |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-logging |
shpc-registry automated BioContainers addition for r-logging |
pango-querymodules, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-longitudinal |
shpc-registry automated BioContainers addition for r-longitudinal |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-loom |
shpc-registry automated BioContainers addition for r-loom |
h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff |
|
GITHUB
|
quay.io/biocontainers/r-loomr |
shpc-registry automated BioContainers addition for r-loomr |
h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff |
|
GITHUB
|
quay.io/biocontainers/r-loose.rock |
shpc-registry automated BioContainers addition for r-loose.rock |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-lsd |
shpc-registry automated BioContainers addition for r-lsd |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-lymphclon |
singularity registry hpc automated addition for r-lymphclon |
|
|
GITHUB
|
quay.io/biocontainers/r-magrittr |
shpc-registry automated BioContainers addition for r-magrittr |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-maldiquant |
shpc-registry automated BioContainers addition for r-maldiquant |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-maldiquantforeign |
shpc-registry automated BioContainers addition for r-maldiquantforeign |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-maldirppa |
shpc-registry automated BioContainers addition for r-maldirppa |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-markdown |
shpc-registry automated BioContainers addition for r-markdown |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-matlab |
shpc-registry automated BioContainers addition for r-matlab |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-matrixeqtl |
shpc-registry automated BioContainers addition for r-matrixeqtl |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-matrixstats |
shpc-registry automated BioContainers addition for r-matrixstats |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-maxlik |
shpc-registry automated BioContainers addition for r-maxlik |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-mba |
shpc-registry automated BioContainers addition for r-mba |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-mclust |
shpc-registry automated BioContainers addition for r-mclust |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-mcpcounter |
shpc-registry automated BioContainers addition for r-mcpcounter |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-merge-kallisto |
shpc-registry automated BioContainers addition for r-merge-kallisto |
merge_kallisto.R, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, basenc, b2sum, base32, base64 |
|
GITHUB
|
quay.io/biocontainers/r-mess |
shpc-registry automated BioContainers addition for r-mess |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-metaboanalyst |
shpc-registry automated BioContainers addition for r-metaboanalyst |
gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif, hdf2jpeg, hdf8to24, hdfcomp |
|
GITHUB
|
quay.io/biocontainers/r-metacoder |
shpc-registry automated BioContainers addition for r-metacoder |
|
|
GITHUB
|
quay.io/biocontainers/r-metadig |
singularity registry hpc automated addition for r-metadig |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/r-metalonda |
shpc-registry automated BioContainers addition for r-metalonda |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-metama |
shpc-registry automated BioContainers addition for r-metama |
|
|
GITHUB
|
quay.io/biocontainers/r-metap |
shpc-registry automated BioContainers addition for r-metap |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-metarnaseq |
shpc-registry automated BioContainers addition for r-metarnaseq |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-metstat |
shpc-registry automated BioContainers addition for r-metstat |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-mfassignr |
singularity registry hpc automated addition for r-mfassignr |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/r-mgcv |
shpc-registry automated BioContainers addition for r-mgcv |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-mgsz |
shpc-registry automated BioContainers addition for r-mgsz |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-micropan |
shpc-registry automated BioContainers addition for r-micropan |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-microseq |
shpc-registry automated BioContainers addition for r-microseq |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-millefy |
singularity registry hpc automated addition for r-millefy |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/r-minems2 |
shpc-registry automated BioContainers addition for r-minems2 |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/r-minionqc |
shpc-registry automated BioContainers addition for r-minionqc |
MinIONQC.R, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-minpack.lm |
shpc-registry automated BioContainers addition for r-minpack.lm |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-misc3d |
shpc-registry automated BioContainers addition for r-misc3d |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-misctools |
shpc-registry automated BioContainers addition for r-misctools |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-misha |
shpc-registry automated BioContainers addition for r-misha |
|
|
GITHUB
|
quay.io/biocontainers/r-missforest |
shpc-registry automated BioContainers addition for r-missforest |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-mitools |
shpc-registry automated BioContainers addition for r-mitools |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-mixedcca |
singularity registry hpc automated addition for r-mixedcca |
|
|
GITHUB
|
quay.io/biocontainers/r-mixkernel |
shpc-registry automated BioContainers addition for r-mixkernel |
|
|
GITHUB
|
quay.io/biocontainers/r-mixomics |
shpc-registry automated BioContainers addition for r-mixomics |
|
|
GITHUB
|
quay.io/biocontainers/r-mixtools |
shpc-registry automated BioContainers addition for r-mixtools |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-mkmisc |
shpc-registry automated BioContainers addition for r-mkmisc |
|
|
GITHUB
|
quay.io/biocontainers/r-mlgt |
shpc-registry automated BioContainers addition for r-mlgt |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-mmcpcounter |
shpc-registry automated BioContainers addition for r-mmcpcounter |
|
|
GITHUB
|
quay.io/biocontainers/r-mmgenome |
shpc-registry automated BioContainers addition for r-mmgenome |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-mmod |
shpc-registry automated BioContainers addition for r-mmod |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-momr |
shpc-registry automated BioContainers addition for r-momr |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-monocle3 |
shpc-registry automated BioContainers addition for r-monocle3 |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach, applygeo |
|
GITHUB
|
quay.io/biocontainers/r-motifbinner |
shpc-registry automated BioContainers addition for r-motifbinner |
pandoc |
|
GITHUB
|
quay.io/biocontainers/r-mqtl |
shpc-registry automated BioContainers addition for r-mqtl |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-msm |
shpc-registry automated BioContainers addition for r-msm |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-mspbwt |
singularity registry hpc automated addition for r-mspbwt |
STITCH.R, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, annot-tsv, hb-info, fasta-sanitize.pl, plot-ampliconstats, tjbench, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl |
|
GITHUB
|
quay.io/biocontainers/r-msqrob |
shpc-registry automated BioContainers addition for r-msqrob |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/r-multicool |
shpc-registry automated BioContainers addition for r-multicool |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-multitaper |
shpc-registry automated BioContainers addition for r-multitaper |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-music |
shpc-registry automated BioContainers addition for r-music |
|
|
GITHUB
|
quay.io/biocontainers/r-mutationalpatterns |
shpc-registry automated BioContainers addition for r-mutationalpatterns |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-mutoss |
shpc-registry automated BioContainers addition for r-mutoss |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-mutsigextractor |
singularity registry hpc automated addition for r-mutsigextractor |
pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, tjbench, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/r-mvr |
shpc-registry automated BioContainers addition for r-mvr |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-mytai |
singularity registry hpc automated addition for r-mytai |
tjbench, glpsol, pandoc |
|
GITHUB
|
quay.io/biocontainers/r-nabor |
shpc-registry automated BioContainers addition for r-nabor |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-nam |
shpc-registry automated BioContainers addition for r-nam |
|
|
GITHUB
|
quay.io/biocontainers/r-nanopore |
shpc-registry automated BioContainers addition for r-nanopore |
pandoc |
|
GITHUB
|
quay.io/biocontainers/r-nanostringnorm |
shpc-registry automated BioContainers addition for r-nanostringnorm |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-nastiseq |
shpc-registry automated BioContainers addition for r-nastiseq |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-nbpseq |
shpc-registry automated BioContainers addition for r-nbpseq |
|
|
GITHUB
|
quay.io/biocontainers/r-ncbit |
shpc-registry automated BioContainers addition for r-ncbit |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-netcomi |
singularity registry hpc automated addition for r-netcomi |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/r-ngsplot |
shpc-registry automated BioContainers addition for r-ngsplot |
ExtractGName.R, alt_reg_cufflinks, alter2bed.pl, combine_diff.pl, coordinat.pl, difflist2bed.pl, get_difflist.pl, gtf2txt_plot.pl, install.db.tables.r, make_cgi_list.R, make_gene_model.R, ngs.plot.r, ngsplotdb.py, parse_diff.pl, plotCorrGram.r, remove.db.tables.r, replot.r, setTableDefaults.py, time.bigWig.extractOnly.r, time.bigWig.r, time.libload.r, time.ngs.plot.extractOnly.r, time.ngs.plot.r, time.tabix.2.r, time.tabix.extractOnly.r, time.tabix.r, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-ngsplotdb-hg19 |
shpc-registry automated BioContainers addition for r-ngsplotdb-hg19 |
ExtractGName.R, alt_reg_cufflinks, alter2bed.pl, combine_diff.pl, coordinat.pl, difflist2bed.pl, get_difflist.pl, gtf2txt_plot.pl, install.db.tables.r, make_cgi_list.R, make_gene_model.R, ngs.plot.r, ngsplotdb.py, parse_diff.pl, plotCorrGram.r, remove.db.tables.r, replot.r, setTableDefaults.py, time.bigWig.extractOnly.r, time.bigWig.r, time.libload.r, time.ngs.plot.extractOnly.r, time.ngs.plot.r, time.tabix.2.r, time.tabix.extractOnly.r, time.tabix.r, wget, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-ngsplotdb-hg38 |
shpc-registry automated BioContainers addition for r-ngsplotdb-hg38 |
ExtractGName.R, alt_reg_cufflinks, alter2bed.pl, combine_diff.pl, coordinat.pl, difflist2bed.pl, get_difflist.pl, gtf2txt_plot.pl, install.db.tables.r, make_cgi_list.R, make_gene_model.R, ngs.plot.r, ngsplotdb.py, parse_diff.pl, plotCorrGram.r, remove.db.tables.r, replot.r, setTableDefaults.py, time.bigWig.extractOnly.r, time.bigWig.r, time.libload.r, time.ngs.plot.extractOnly.r, time.ngs.plot.r, time.tabix.2.r, time.tabix.extractOnly.r, time.tabix.r, idn2, wget, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-ngsplotdb-mm10 |
shpc-registry automated BioContainers addition for r-ngsplotdb-mm10 |
ExtractGName.R, alt_reg_cufflinks, alter2bed.pl, combine_diff.pl, coordinat.pl, difflist2bed.pl, get_difflist.pl, gtf2txt_plot.pl, install.db.tables.r, make_cgi_list.R, make_gene_model.R, ngs.plot.r, ngsplotdb.py, parse_diff.pl, plotCorrGram.r, remove.db.tables.r, replot.r, setTableDefaults.py, time.bigWig.extractOnly.r, time.bigWig.r, time.libload.r, time.ngs.plot.extractOnly.r, time.ngs.plot.r, time.tabix.2.r, time.tabix.extractOnly.r, time.tabix.r, idn2, wget, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-nhmmfdr |
shpc-registry automated BioContainers addition for r-nhmmfdr |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-nleqslv |
shpc-registry automated BioContainers addition for r-nleqslv |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-nodiv |
shpc-registry automated BioContainers addition for r-nodiv |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-noisyr |
singularity registry hpc automated addition for r-noisyr |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/r-nor1mix |
shpc-registry automated BioContainers addition for r-nor1mix |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-nozzle.r1 |
shpc-registry automated BioContainers addition for r-nozzle.r1 |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-oai |
shpc-registry automated BioContainers addition for r-oai |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-oncopharmadb |
shpc-registry automated BioContainers addition for r-oncopharmadb |
|
|
GITHUB
|
quay.io/biocontainers/r-ontologyplot |
shpc-registry automated BioContainers addition for r-ontologyplot |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-openxlsx |
shpc-registry automated BioContainers addition for r-openxlsx |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-optparse |
shpc-registry automated BioContainers addition for r-optparse |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-ore |
shpc-registry automated BioContainers addition for r-ore |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-orqa |
shpc-registry automated BioContainers addition for r-orqa |
|
|
GITHUB
|
quay.io/biocontainers/r-outliers |
shpc-registry automated BioContainers addition for r-outliers |
pango-querymodules, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-pack |
shpc-registry automated BioContainers addition for r-pack |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-pairadise |
singularity registry hpc automated addition for r-pairadise |
|
|
GITHUB
|
quay.io/biocontainers/r-pamr |
shpc-registry automated BioContainers addition for r-pamr |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-panther |
singularity registry hpc automated addition for r-panther |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, pandoc, python3.1 |
|
GITHUB
|
quay.io/biocontainers/r-params |
shpc-registry automated BioContainers addition for r-params |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-pathfindr |
singularity registry hpc automated addition for r-pathfindr |
clhsdb, hsdb, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, display, identify, import, magick, magick-script, mogrify, montage, convert, pkg-config, pkg-config.bin, stream, compare, dvipdf, eps2eps, gs, gsbj |
|
GITHUB
|
quay.io/biocontainers/r-pathwaytmb |
singularity registry hpc automated addition for r-pathwaytmb |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/r-patpro |
shpc-registry automated BioContainers addition for r-patpro |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-pcalg |
shpc-registry automated BioContainers addition for r-pcalg |
|
|
GITHUB
|
quay.io/biocontainers/r-pcapp |
shpc-registry automated BioContainers addition for r-pcapp |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-pctgcdata |
shpc-registry automated BioContainers addition for r-pctgcdata |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-peer |
shpc-registry automated BioContainers addition for r-peer |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-pegas |
shpc-registry automated BioContainers addition for r-pegas |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-penalized |
shpc-registry automated BioContainers addition for r-penalized |
pango-querymodules, uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-perfmeas |
shpc-registry automated BioContainers addition for r-perfmeas |
|
|
GITHUB
|
quay.io/biocontainers/r-permute |
shpc-registry automated BioContainers addition for r-permute |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-phangorn |
shpc-registry automated BioContainers addition for r-phangorn |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-pheatmap |
shpc-registry automated BioContainers addition for r-pheatmap |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-phewas |
shpc-registry automated BioContainers addition for r-phewas |
|
|
GITHUB
|
quay.io/biocontainers/r-phonr |
shpc-registry automated BioContainers addition for r-phonr |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-phyext2 |
shpc-registry automated BioContainers addition for r-phyext2 |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-phylobase |
shpc-registry automated BioContainers addition for r-phylobase |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-phylomeasures |
shpc-registry automated BioContainers addition for r-phylomeasures |
|
|
GITHUB
|
quay.io/biocontainers/r-phylosignal |
shpc-registry automated BioContainers addition for r-phylosignal |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-phytools |
shpc-registry automated BioContainers addition for r-phytools |
|
|
GITHUB
|
quay.io/biocontainers/r-pinfsc50 |
shpc-registry automated BioContainers addition for r-pinfsc50 |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-pipette |
shpc-registry automated BioContainers addition for r-pipette |
|
|
GITHUB
|
quay.io/biocontainers/r-plasmidprofiler |
shpc-registry automated BioContainers addition for r-plasmidprofiler |
pandoc-citeproc, uconv, pandoc, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-plotly |
shpc-registry automated BioContainers addition for r-plotly |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-plotrix |
shpc-registry automated BioContainers addition for r-plotrix |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-plsgenomics |
shpc-registry automated BioContainers addition for r-plsgenomics |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-pma |
shpc-registry automated BioContainers addition for r-pma |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-pmcmr |
shpc-registry automated BioContainers addition for r-pmcmr |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-png |
shpc-registry automated BioContainers addition for r-png |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-polynom |
shpc-registry automated BioContainers addition for r-polynom |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-polysat |
shpc-registry automated BioContainers addition for r-polysat |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-popgenome |
shpc-registry automated BioContainers addition for r-popgenome |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-popgenreport |
shpc-registry automated BioContainers addition for r-popgenreport |
testepsg, gdal_create, pg_standby, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, pdfattach, applygeo, geotifcp |
|
GITHUB
|
quay.io/biocontainers/r-pophelper |
shpc-registry automated BioContainers addition for r-pophelper |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-poppr |
shpc-registry automated BioContainers addition for r-poppr |
gdalserver, testepsg, pg_standby, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums |
|
GITHUB
|
quay.io/biocontainers/r-pore |
shpc-registry automated BioContainers addition for r-pore |
parsort, perl5.32.0, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh |
|
GITHUB
|
quay.io/biocontainers/r-prabclus |
shpc-registry automated BioContainers addition for r-prabclus |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-pracma |
shpc-registry automated BioContainers addition for r-pracma |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-precrec |
shpc-registry automated BioContainers addition for r-precrec |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-preseqr |
shpc-registry automated BioContainers addition for r-preseqr |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-prestor |
shpc-registry automated BioContainers addition for r-prestor |
pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-prettyunits |
shpc-registry automated BioContainers addition for r-prettyunits |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-probmetab |
shpc-registry automated BioContainers addition for r-probmetab |
nc-config, nccopy, ncdump, ncgen, ncgen3, gif2h5, h52gif, h5c++, h5copy, h5debug |
|
GITHUB
|
quay.io/biocontainers/r-progress |
shpc-registry automated BioContainers addition for r-progress |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-proj4 |
shpc-registry automated BioContainers addition for r-proj4 |
nad2bin, invgeod, invproj, cs2cs, geod, proj, uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-propcis |
shpc-registry automated BioContainers addition for r-propcis |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-propr |
singularity registry hpc automated addition for r-propr |
hb-info, tjbench, glpsol |
|
GITHUB
|
quay.io/biocontainers/r-proteus-bartongroup |
singularity registry hpc automated addition for r-proteus-bartongroup |
hb-info, tjbench, pandoc |
|
GITHUB
|
quay.io/biocontainers/r-proxy |
shpc-registry automated BioContainers addition for r-proxy |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-prroc |
shpc-registry automated BioContainers addition for r-prroc |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-pscbs |
shpc-registry automated BioContainers addition for r-pscbs |
|
|
GITHUB
|
quay.io/biocontainers/r-pscl |
shpc-registry automated BioContainers addition for r-pscl |
pango-querymodules, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-pspecterlib |
singularity registry hpc automated addition for r-pspecterlib |
aprofutil, mono-hang-watchdog, csc, csi, illinkanalyzer, vbc, mono-package-runtime, sgen-grep-binprot, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr, chktrust, crlupdate, csharp, dmcs, dtd2rng, dtd2xsd, gacutil, gacutil2, genxs, httpcfg, ikdasm |
|
GITHUB
|
quay.io/biocontainers/r-psych |
shpc-registry automated BioContainers addition for r-psych |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-ptw |
shpc-registry automated BioContainers addition for r-ptw |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-purbayes |
shpc-registry automated BioContainers addition for r-purbayes |
jags, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-purrr |
shpc-registry automated BioContainers addition for r-purrr |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-qiime2r |
singularity registry hpc automated addition for r-qiime2r |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/r-qiimer |
shpc-registry automated BioContainers addition for r-qiimer |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-qlcmatrix |
shpc-registry automated BioContainers addition for r-qlcmatrix |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-qorts |
shpc-registry automated BioContainers addition for r-qorts |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-qpcr |
shpc-registry automated BioContainers addition for r-qpcr |
|
|
GITHUB
|
quay.io/biocontainers/r-qqman |
shpc-registry automated BioContainers addition for r-qqman |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-qtl |
shpc-registry automated BioContainers addition for r-qtl |
|
|
GITHUB
|
quay.io/biocontainers/r-qtl2 |
shpc-registry automated BioContainers addition for r-qtl2 |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-qtlseqr |
shpc-registry automated BioContainers addition for r-qtlseqr |
|
|
GITHUB
|
quay.io/biocontainers/r-quilt |
shpc-registry automated BioContainers addition for r-quilt |
rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl |
|
GITHUB
|
quay.io/biocontainers/r-quorts |
shpc-registry automated BioContainers addition for r-quorts |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-r.cache |
shpc-registry automated BioContainers addition for r-r.cache |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-r.devices |
shpc-registry automated BioContainers addition for r-r.devices |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-r.filesets |
shpc-registry automated BioContainers addition for r-r.filesets |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-r.huge |
shpc-registry automated BioContainers addition for r-r.huge |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-r.methodss3 |
shpc-registry automated BioContainers addition for r-r.methodss3 |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-r.oo |
shpc-registry automated BioContainers addition for r-r.oo |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-r.rsp |
shpc-registry automated BioContainers addition for r-r.rsp |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-r.utils |
shpc-registry automated BioContainers addition for r-r.utils |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-r0 |
shpc-registry automated BioContainers addition for r-r0 |
|
|
GITHUB
|
quay.io/biocontainers/r-r2html |
shpc-registry automated BioContainers addition for r-r2html |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-r4cker |
shpc-registry automated BioContainers addition for r-r4cker |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-raceid |
shpc-registry automated BioContainers addition for r-raceid |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-rainbow |
shpc-registry automated BioContainers addition for r-rainbow |
|
|
GITHUB
|
quay.io/biocontainers/r-ramclustr |
shpc-registry automated BioContainers addition for r-ramclustr |
zipcmp, zipmerge, ziptool, gif2hdf, h4_ncdump, h4_ncgen, h4cc, h4redeploy, hdf24to8, hdf2gif |
|
GITHUB
|
quay.io/biocontainers/r-rann |
shpc-registry automated BioContainers addition for r-rann |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-rapidr |
shpc-registry automated BioContainers addition for r-rapidr |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-rappdirs |
shpc-registry automated BioContainers addition for r-rappdirs |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-rbamtools |
shpc-registry automated BioContainers addition for r-rbamtools |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-rbison |
shpc-registry automated BioContainers addition for r-rbison |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-rblast |
shpc-registry automated BioContainers addition for r-rblast |
CA.pm, cacert.pem, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras, pm-collect, readme.pdf |
|
GITHUB
|
quay.io/biocontainers/r-rcircos |
shpc-registry automated BioContainers addition for r-rcircos |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-rcppgsl |
shpc-registry automated BioContainers addition for r-rcppgsl |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-rcppparallel |
shpc-registry automated BioContainers addition for r-rcppparallel |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-rcpptoml |
shpc-registry automated BioContainers addition for r-rcpptoml |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-readbrukerflexdata |
shpc-registry automated BioContainers addition for r-readbrukerflexdata |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-readmzxmldata |
shpc-registry automated BioContainers addition for r-readmzxmldata |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-readr |
shpc-registry automated BioContainers addition for r-readr |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-rebird |
shpc-registry automated BioContainers addition for r-rebird |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-recetox-aplcms |
shpc-registry automated BioContainers addition for r-recetox-aplcms |
csv-import, elasticurl, elasticurl_cpp, elastipubsub, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, plasma-store-server, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin |
|
GITHUB
|
quay.io/biocontainers/r-recetox-waveica |
shpc-registry automated BioContainers addition for r-recetox-waveica |
|
|
GITHUB
|
quay.io/biocontainers/r-recetox-xmsannotator |
shpc-registry automated BioContainers addition for r-recetox-xmsannotator |
orc-contents, orc-metadata, orc-statistics, plasma-store-server, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin |
|
GITHUB
|
quay.io/biocontainers/r-redeemr |
singularity registry hpc automated addition for r-redeemr |
pandoc-lua, pandoc-server, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, glpsol, hb-info, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/r-relaimpo |
shpc-registry automated BioContainers addition for r-relaimpo |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-relations |
shpc-registry automated BioContainers addition for r-relations |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-remapenrich |
singularity registry hpc automated addition for r-remapenrich |
x86_64-conda-linux-gnu.cfg, idle3.13, pydoc3.13, python3.13, python3.13-config, my_print_defaults, mysql_config, perror, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, hb-info, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/r-rematch2 |
shpc-registry automated BioContainers addition for r-rematch2 |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-rentrez |
shpc-registry automated BioContainers addition for r-rentrez |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-reshape |
shpc-registry automated BioContainers addition for r-reshape |
|
|
GITHUB
|
quay.io/biocontainers/r-reshape2 |
shpc-registry automated BioContainers addition for r-reshape2 |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-restfulr |
shpc-registry automated BioContainers addition for r-restfulr |
|
|
GITHUB
|
quay.io/biocontainers/r-rfoc |
shpc-registry automated BioContainers addition for r-rfoc |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-rgbif |
shpc-registry automated BioContainers addition for r-rgbif |
geos-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-rgraphics |
shpc-registry automated BioContainers addition for r-rgraphics |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-riborex |
shpc-registry automated BioContainers addition for r-riborex |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-ridigbio |
shpc-registry automated BioContainers addition for r-ridigbio |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-rismed |
shpc-registry automated BioContainers addition for r-rismed |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-rjson |
shpc-registry automated BioContainers addition for r-rjson |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-rlist |
shpc-registry automated BioContainers addition for r-rlist |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-rmarkdown |
shpc-registry automated BioContainers addition for r-rmarkdown |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-rmysql |
shpc-registry automated BioContainers addition for r-rmysql |
my_print_defaults, mysql_config, perror, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config |
|
GITHUB
|
quay.io/biocontainers/r-rnexml |
shpc-registry automated BioContainers addition for r-rnexml |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-rniftyreg |
shpc-registry automated BioContainers addition for r-rniftyreg |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-robustbase |
shpc-registry automated BioContainers addition for r-robustbase |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-robustrankaggreg |
shpc-registry automated BioContainers addition for r-robustrankaggreg |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-rocr |
shpc-registry automated BioContainers addition for r-rocr |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-rphast |
shpc-registry automated BioContainers addition for r-rphast |
|
|
GITHUB
|
quay.io/biocontainers/r-rphylip |
shpc-registry automated BioContainers addition for r-rphylip |
DrawGram.jar, DrawTree.jar, clique, consense, contml, contrast, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, dollop, dolmove, dolpenny, drawgram, drawgram_gui, drawtree, drawtree_gui, fitch, gendist, kitsch, mix, move, neighbor, pars, penny, phylip, proml, promlk, protdist, protpars, restdist, restml, retree, seqboot, treedist, factor, easy_install-3.6, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/r-rpmg |
shpc-registry automated BioContainers addition for r-rpmg |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-rrbgen |
shpc-registry automated BioContainers addition for r-rrbgen |
|
|
GITHUB
|
quay.io/biocontainers/r-rrcov |
shpc-registry automated BioContainers addition for r-rrcov |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-rseis |
shpc-registry automated BioContainers addition for r-rseis |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-rsm |
shpc-registry automated BioContainers addition for r-rsm |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-rsnps |
shpc-registry automated BioContainers addition for r-rsnps |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-rsolnp |
shpc-registry automated BioContainers addition for r-rsolnp |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-rspectral |
singularity registry hpc automated addition for r-rspectral |
glpsol |
|
GITHUB
|
quay.io/biocontainers/r-rtassel |
shpc-registry automated BioContainers addition for r-rtassel |
jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/r-rtfbs |
shpc-registry automated BioContainers addition for r-rtfbs |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-rtsne |
shpc-registry automated BioContainers addition for r-rtsne |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-rttf2pt1 |
shpc-registry automated BioContainers addition for r-rttf2pt1 |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-rubic |
shpc-registry automated BioContainers addition for r-rubic |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-runit |
shpc-registry automated BioContainers addition for r-runit |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-rvertnet |
shpc-registry automated BioContainers addition for r-rvertnet |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-rwave |
shpc-registry automated BioContainers addition for r-rwave |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-saccharis |
singularity registry hpc automated addition for r-saccharis |
hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/r-sads |
shpc-registry automated BioContainers addition for r-sads |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-saige |
shpc-registry automated BioContainers addition for r-saige |
bgenix, cat-bgen, createSparseGRM.R, edit-bgen, extractNglmm.R, sav, step1_fitNULLGLMM.R, step2_SPAtests.R |
|
GITHUB
|
quay.io/biocontainers/r-samr |
shpc-registry automated BioContainers addition for r-samr |
|
|
GITHUB
|
quay.io/biocontainers/r-sartools |
shpc-registry automated BioContainers addition for r-sartools |
pandoc |
|
GITHUB
|
quay.io/biocontainers/r-sbpiper |
shpc-registry automated BioContainers addition for r-sbpiper |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-scales |
shpc-registry automated BioContainers addition for r-scales |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-scatterplot3d |
shpc-registry automated BioContainers addition for r-scatterplot3d |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-scavenge |
singularity registry hpc automated addition for r-scavenge |
pandoc-lua, pandoc-server, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, glpsol, hb-info, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, pandoc, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, tjbench |
|
GITHUB
|
quay.io/biocontainers/r-scbio |
shpc-registry automated BioContainers addition for r-scbio |
|
|
GITHUB
|
quay.io/biocontainers/r-sceasy |
shpc-registry automated BioContainers addition for r-sceasy |
pg_amcheck, gdal_create, pdfsig, gdal_viewshed, gdalmdiminfo, gdalmdimtranslate, pg_verifybackup, geosop, pdfattach, applygeo |
|
GITHUB
|
quay.io/biocontainers/r-scevan |
singularity registry hpc automated addition for r-scevan |
git2, pcre2posix_test, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, glpsol, hb-info, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, tjbench, pandoc, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete |
|
GITHUB
|
quay.io/biocontainers/r-scimpute |
shpc-registry automated BioContainers addition for r-scimpute |
parsort, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh, env_parallel.pdksh |
|
GITHUB
|
quay.io/biocontainers/r-scoper |
singularity registry hpc automated addition for r-scoper |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/r-scpred |
shpc-registry automated BioContainers addition for r-scpred |
pandoc, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-scrm |
shpc-registry automated BioContainers addition for r-scrm |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-seamless |
shpc-registry automated BioContainers addition for r-seamless |
|
|
GITHUB
|
quay.io/biocontainers/r-segmented |
shpc-registry automated BioContainers addition for r-segmented |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-sendmailr |
shpc-registry automated BioContainers addition for r-sendmailr |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-seqinr |
shpc-registry automated BioContainers addition for r-seqinr |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-seqmagick |
shpc-registry automated BioContainers addition for r-seqmagick |
|
|
GITHUB
|
quay.io/biocontainers/r-seqminer |
shpc-registry automated BioContainers addition for r-seqminer |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-sequenza |
shpc-registry automated BioContainers addition for r-sequenza |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-sets |
shpc-registry automated BioContainers addition for r-sets |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-seurat-data |
singularity registry hpc automated addition for r-seurat-data |
pcre2posix_test, hb-info, tjbench |
|
GITHUB
|
quay.io/biocontainers/r-seurat-disk |
singularity registry hpc automated addition for r-seurat-disk |
pandoc-lua, h5tools_test_utils, pandoc-server, h5fuse.sh, h5delete, pcre2posix_test, glpsol, hb-info, pandoc, tjbench, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp, h5perf_serial, h5redeploy |
|
GITHUB
|
quay.io/biocontainers/r-seurat-scripts |
shpc-registry automated BioContainers addition for r-seurat-scripts |
r-seurat-scripts-post-install-tests.bats, r-seurat-scripts-post-install-tests.sh, seurat-create-seurat-object.R, seurat-dim-plot.R, seurat-filter-cells.R, seurat-find-clusters.R, seurat-find-markers.R, seurat-find-variable-genes.R, seurat-get-random-genes.R, seurat-normalise-data.R, seurat-read-10x.R, seurat-run-pca.R, seurat-run-tsne.R, seurat-scale-data.R, conda_build.sh, jaotc, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs, pack200 |
|
GITHUB
|
quay.io/biocontainers/r-seurat |
shpc-registry automated BioContainers addition for r-seurat |
|
|
GITHUB
|
quay.io/biocontainers/r-sew |
shpc-registry automated BioContainers addition for r-sew |
rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, basenc, b2sum, base32, base64 |
|
GITHUB
|
quay.io/biocontainers/r-sgtr |
shpc-registry automated BioContainers addition for r-sgtr |
|
|
GITHUB
|
quay.io/biocontainers/r-shaman |
shpc-registry automated BioContainers addition for r-shaman |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-shape |
shpc-registry automated BioContainers addition for r-shape |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-shazam |
shpc-registry automated BioContainers addition for r-shazam |
glpsol |
|
GITHUB
|
quay.io/biocontainers/r-shinyace |
shpc-registry automated BioContainers addition for r-shinyace |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-shinybs |
shpc-registry automated BioContainers addition for r-shinybs |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-shinyngs |
shpc-registry automated BioContainers addition for r-shinyngs |
make_app_from_files.R |
|
GITHUB
|
quay.io/biocontainers/r-sigminer |
shpc-registry automated BioContainers addition for r-sigminer |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/r-signac |
shpc-registry automated BioContainers addition for r-signac |
geosop, geos-config |
|
GITHUB
|
quay.io/biocontainers/r-signal |
shpc-registry automated BioContainers addition for r-signal |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-sigqc |
shpc-registry automated BioContainers addition for r-sigqc |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-sigtree |
shpc-registry automated BioContainers addition for r-sigtree |
|
|
GITHUB
|
quay.io/biocontainers/r-singlecellnet |
shpc-registry automated BioContainers addition for r-singlecellnet |
f2py3.9, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug |
|
GITHUB
|
quay.io/biocontainers/r-skellam |
shpc-registry automated BioContainers addition for r-skellam |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-sleuth |
shpc-registry automated BioContainers addition for r-sleuth |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-smartsva |
shpc-registry automated BioContainers addition for r-smartsva |
|
|
GITHUB
|
quay.io/biocontainers/r-smvar |
shpc-registry automated BioContainers addition for r-smvar |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-snow |
shpc-registry automated BioContainers addition for r-snow |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-snowfall |
shpc-registry automated BioContainers addition for r-snowfall |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-snpassoc |
shpc-registry automated BioContainers addition for r-snpassoc |
tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-soap-nmr |
shpc-registry automated BioContainers addition for r-soap-nmr |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-solarius |
shpc-registry automated BioContainers addition for r-solarius |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-som |
shpc-registry automated BioContainers addition for r-som |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-spacexr |
singularity registry hpc automated addition for r-spacexr |
pandoc-lua, pandoc-server, hb-info, pandoc, tjbench |
|
GITHUB
|
quay.io/biocontainers/r-spam |
shpc-registry automated BioContainers addition for r-spam |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-sparql |
shpc-registry automated BioContainers addition for r-sparql |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-spdep |
shpc-registry automated BioContainers addition for r-spdep |
pango-querymodules, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-speaq |
shpc-registry automated BioContainers addition for r-speaq |
|
|
GITHUB
|
quay.io/biocontainers/r-speedglm |
shpc-registry automated BioContainers addition for r-speedglm |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-spieceasi |
shpc-registry automated BioContainers addition for r-spieceasi |
|
|
GITHUB
|
quay.io/biocontainers/r-splancs |
shpc-registry automated BioContainers addition for r-splancs |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-splitstackshape |
shpc-registry automated BioContainers addition for r-splitstackshape |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-spocc |
shpc-registry automated BioContainers addition for r-spocc |
geos-config, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-spp |
shpc-registry automated BioContainers addition for r-spp |
|
|
GITHUB
|
quay.io/biocontainers/r-spring |
singularity registry hpc automated addition for r-spring |
glpsol |
|
GITHUB
|
quay.io/biocontainers/r-sqldf |
shpc-registry automated BioContainers addition for r-sqldf |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-stampp |
shpc-registry automated BioContainers addition for r-stampp |
gdalserver, testepsg, pg_standby, applygeo, geotifcp, gnmanalyse, gnmmanage, kea-config, listgeo, makegeo, pg_checksums |
|
GITHUB
|
quay.io/biocontainers/r-statmod |
shpc-registry automated BioContainers addition for r-statmod |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-statvisual |
shpc-registry automated BioContainers addition for r-statvisual |
pandoc, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-stitch |
shpc-registry automated BioContainers addition for r-stitch |
rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl |
|
GITHUB
|
quay.io/biocontainers/r-stringr |
shpc-registry automated BioContainers addition for r-stringr |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-structssi |
shpc-registry automated BioContainers addition for r-structssi |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-survey |
shpc-registry automated BioContainers addition for r-survey |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-svdialogs |
shpc-registry automated BioContainers addition for r-svdialogs |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-svgui |
shpc-registry automated BioContainers addition for r-svgui |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-swamp |
shpc-registry automated BioContainers addition for r-swamp |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-syntactic |
shpc-registry automated BioContainers addition for r-syntactic |
|
|
GITHUB
|
quay.io/biocontainers/r-tailfindr |
shpc-registry automated BioContainers addition for r-tailfindr |
mirror_server, mirror_server_stop, pandoc, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++ |
|
GITHUB
|
quay.io/biocontainers/r-tangles |
shpc-registry automated BioContainers addition for r-tangles |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-taxa |
shpc-registry automated BioContainers addition for r-taxa |
|
|
GITHUB
|
quay.io/biocontainers/r-taxonomizr |
shpc-registry automated BioContainers addition for r-taxonomizr |
parsort, perl5.32.0, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh |
|
GITHUB
|
quay.io/biocontainers/r-tcga2stat |
shpc-registry automated BioContainers addition for r-tcga2stat |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-tcr |
shpc-registry automated BioContainers addition for r-tcr |
|
|
GITHUB
|
quay.io/biocontainers/r-testthat |
shpc-registry automated BioContainers addition for r-testthat |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-tfmpvalue |
shpc-registry automated BioContainers addition for r-tfmpvalue |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-tftargets |
shpc-registry automated BioContainers addition for r-tftargets |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-tibble |
shpc-registry automated BioContainers addition for r-tibble |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-tidygenomics |
shpc-registry automated BioContainers addition for r-tidygenomics |
|
|
GITHUB
|
quay.io/biocontainers/r-tidyheatmap |
singularity registry hpc automated addition for r-tidyheatmap |
|
|
GITHUB
|
quay.io/biocontainers/r-tidyr |
shpc-registry automated BioContainers addition for r-tidyr |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-tidyverse |
shpc-registry automated BioContainers addition for r-tidyverse |
pandoc-citeproc, pandoc, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-tiff |
shpc-registry automated BioContainers addition for r-tiff |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-tigger |
shpc-registry automated BioContainers addition for r-tigger |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-tinyarray |
singularity registry hpc automated addition for r-tinyarray |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, glpsol, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/r-tmae |
shpc-registry automated BioContainers addition for r-tmae |
|
|
GITHUB
|
quay.io/biocontainers/r-traminer |
shpc-registry automated BioContainers addition for r-traminer |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-transformer |
shpc-registry automated BioContainers addition for r-transformer |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-transphylo |
shpc-registry automated BioContainers addition for r-transphylo |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-treesim |
shpc-registry automated BioContainers addition for r-treesim |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-trimcluster |
shpc-registry automated BioContainers addition for r-trimcluster |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-truncnorm |
shpc-registry automated BioContainers addition for r-truncnorm |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-tsne |
shpc-registry automated BioContainers addition for r-tsne |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-txrevise |
shpc-registry automated BioContainers addition for r-txrevise |
|
|
GITHUB
|
quay.io/biocontainers/r-umi4c |
shpc-registry automated BioContainers addition for r-umi4c |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-umianalyzer |
singularity registry hpc automated addition for r-umianalyzer |
installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/r-upsetr |
shpc-registry automated BioContainers addition for r-upsetr |
pango-querymodules, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-vcfr |
shpc-registry automated BioContainers addition for r-vcfr |
gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-vegan |
shpc-registry automated BioContainers addition for r-vegan |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-velocyto.r |
shpc-registry automated BioContainers addition for r-velocyto.r |
mirror_server, mirror_server_stop, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy |
|
GITHUB
|
quay.io/biocontainers/r-venn |
shpc-registry automated BioContainers addition for r-venn |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-venndiagram |
shpc-registry automated BioContainers addition for r-venndiagram |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-vgam |
shpc-registry automated BioContainers addition for r-vgam |
bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-virfinder |
shpc-registry automated BioContainers addition for r-virfinder |
|
|
GITHUB
|
quay.io/biocontainers/r-viridis |
shpc-registry automated BioContainers addition for r-viridis |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-viridislite |
shpc-registry automated BioContainers addition for r-viridislite |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-viscorvar |
shpc-registry automated BioContainers addition for r-viscorvar |
pandoc, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/r-vision |
shpc-registry automated BioContainers addition for r-vision |
|
|
GITHUB
|
quay.io/biocontainers/r-wasabi |
shpc-registry automated BioContainers addition for r-wasabi |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-waveslim |
shpc-registry automated BioContainers addition for r-waveslim |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-wgcna |
shpc-registry automated BioContainers addition for r-wgcna |
|
|
GITHUB
|
quay.io/biocontainers/r-whopgenome |
shpc-registry automated BioContainers addition for r-whopgenome |
|
|
GITHUB
|
quay.io/biocontainers/r-wicket |
shpc-registry automated BioContainers addition for r-wicket |
c89, c99 |
|
GITHUB
|
quay.io/biocontainers/r-workflowscriptscommon |
shpc-registry automated BioContainers addition for r-workflowscriptscommon |
|
|
GITHUB
|
quay.io/biocontainers/r-wormbase |
singularity registry hpc automated addition for r-wormbase |
hb-info, tjbench, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, installBiocDataPackage.sh, tomlq, xq, yq, jq, onig-config, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, python3.1 |
|
GITHUB
|
quay.io/biocontainers/r-wrassp |
shpc-registry automated BioContainers addition for r-wrassp |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-writexls |
shpc-registry automated BioContainers addition for r-writexls |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-xcell |
shpc-registry automated BioContainers addition for r-xcell |
|
|
GITHUB
|
quay.io/biocontainers/r-xgr |
shpc-registry automated BioContainers addition for r-xgr |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-xmlrpc |
shpc-registry automated BioContainers addition for r-xmlrpc |
x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/r-xnomial |
shpc-registry automated BioContainers addition for r-xnomial |
pngcp, bmp2tiff, gif2tiff, ras2tiff, rgb2ycbcr, thumbnail, uconv, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-yaml |
shpc-registry automated BioContainers addition for r-yaml |
uconv, tclsh8.5, wish8.5, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r-zerone |
shpc-registry automated BioContainers addition for r-zerone |
ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/r |
shpc-registry automated BioContainers addition for r |
|
|
GITHUB
|
quay.io/biocontainers/r2r |
shpc-registry automated BioContainers addition for r2r |
r2r, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/ra-integrate |
shpc-registry automated BioContainers addition for ra-integrate |
consensus, depot, dotty, fill_read_coverage, filter_contained, filter_erroneous_overlaps, filter_transitive, lneato, overlap2dot, ra-integrate, ra_consensus, to_afg, unitigger, widen_overlaps, zoom, erb, gem, irb, rake, rdoc, ri, ruby, easy_install-3.5, pngcp, 2to3-3.5 |
|
GITHUB
|
quay.io/biocontainers/ra |
shpc-registry automated BioContainers addition for ra |
|
|
GITHUB
|
quay.io/biocontainers/rabbitqcplus |
singularity registry hpc automated addition for rabbitqcplus |
RabbitQCPlus, rabbitqcplus |
|
GITHUB
|
quay.io/biocontainers/rabbittclust |
singularity registry hpc automated addition for rabbittclust |
clust-greedy, clust-mst |
|
GITHUB
|
quay.io/biocontainers/rabix-bunny |
shpc-registry automated BioContainers addition for rabix-bunny |
rabix, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
|
GITHUB
|
quay.io/biocontainers/racon |
shpc-registry automated BioContainers addition for racon |
racon, racon_wrapper, rampler, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/rad_haplotyper |
shpc-registry automated BioContainers addition for rad_haplotyper |
ErrorCount.sh, RefMapOpt.sh, ReferenceOpt.sh, Rename_SequenceFiles.sh, dDocent, dDocent_filters, filter_hwe_by_pop.pl, filter_missing_ind.sh, mawk, pear, pearRM, pop_missing_filter.sh, rad_haplotyper.pl, rainbow, remake_reference.sh, remove.bad.hap.loci.sh, sam_add_rg.pl, select_all_rbcontig.pl, select_all_rbcontig.pl.bak, select_best_rbcontig.pl, select_best_rbcontig.pl.bak, select_best_rbcontig_plus_read1.pl, select_best_rbcontig_plus_read1.pl.bak, select_sec_rbcontig.pl, select_sec_rbcontig.pl.bak, split_ref_by_bai_datasize.py, tab-to-vcf, update_version.sh, vcf-haplotypes, vcftools, fill-aa, fill-an-ac, fill-fs, fill-ref-md5, vcf-annotate, vcf-compare, vcf-concat, vcf-consensus, vcf-contrast, vcf-convert |
|
GITHUB
|
quay.io/biocontainers/radiant |
singularity registry hpc automated addition for radiant |
makeRadiantDB, radiant |
|
GITHUB
|
quay.io/biocontainers/radsex |
shpc-registry automated BioContainers addition for radsex |
radsex |
|
GITHUB
|
quay.io/biocontainers/radtk |
singularity registry hpc automated addition for radtk |
radtk |
|
GITHUB
|
quay.io/biocontainers/ragout |
shpc-registry automated BioContainers addition for ragout |
C-Sibelia.py, Sibelia, ragout, ragout-maf2synteny, ragout-overlap, snpEffAnnotate.py, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/ragtag |
shpc-registry automated BioContainers addition for ragtag |
ragtag.py, ragtag_agp2fa.py, ragtag_agpcheck.py, ragtag_asmstats.py, ragtag_break_query.py, ragtag_correct.py, ragtag_create_links.py, ragtag_delta2paf.py, ragtag_merge.py, ragtag_paf2delta.py, ragtag_patch.py, ragtag_rename.py, ragtag_scaffold.py, ragtag_splitasm.py, ragtag_stats.py, ragtag_update_gff.py, setup.py, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot |
|
GITHUB
|
quay.io/biocontainers/rainbow |
shpc-registry automated BioContainers addition for rainbow |
rainbow, select_all_rbcontig.pl, select_all_rbcontig.pl.bak, select_best_rbcontig.pl, select_best_rbcontig.pl.bak, select_best_rbcontig_plus_read1.pl, select_best_rbcontig_plus_read1.pl.bak, select_sec_rbcontig.pl, select_sec_rbcontig.pl.bak, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/raiss |
shpc-registry automated BioContainers addition for raiss |
raiss, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/rambo-k |
shpc-registry automated BioContainers addition for rambo-k |
RAMBOK.py, classifier.jar, plot.py, simulate_reads.py, trainer.jar, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/randfold |
shpc-registry automated BioContainers addition for randfold |
afetch, alistat, compalign, compstruct, randfold, revcomp, seqsplit, seqstat, sfetch, shuffle, sindex, sreformat, translate, weight |
|
GITHUB
|
quay.io/biocontainers/rapclust |
shpc-registry automated BioContainers addition for rapclust |
|
|
GITHUB
|
quay.io/biocontainers/rapgreen |
singularity registry hpc automated addition for rapgreen |
jwebserver, rapgreen, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, jpackage, hb-info, cups-config, ippeveprinter, ipptool, tjbench, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc |
|
GITHUB
|
quay.io/biocontainers/rapid |
shpc-registry automated BioContainers addition for rapid |
compPlot.Rmd, homePage.Rmd, master.html, rapidDiff.r, rapidDiff.sh, rapidNorm.r, rapidNorm.sh, rapidStats.r, rapidStats.sh, rapidVis.r, rapidVis.sh, rapid_ParseSam.pl, rapid_ToFasta.pl, statsPlot.Rmd, perl5.32.0, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s |
|
GITHUB
|
quay.io/biocontainers/rapidnj |
shpc-registry automated BioContainers addition for rapidnj |
rapidnj |
|
GITHUB
|
quay.io/biocontainers/rapidshapes |
singularity registry hpc automated addition for rapidshapes |
RapidShapes, RapidShapes_kbest_macrostate, RapidShapes_kbest_microstate, RapidShapes_kbest_nodangle, RapidShapes_kbest_overdangle, RapidShapes_pfall_macrostate, RapidShapes_pfall_microstate, RapidShapes_pfall_nodangle, RapidShapes_pfall_overdangle, RapidShapes_sample_macrostate, RapidShapes_sample_microstate, RapidShapes_sample_nodangle, RapidShapes_sample_overdangle, RapidShapes_subopt_macrostate, RapidShapes_subopt_microstate, RapidShapes_subopt_nodangle, RapidShapes_subopt_overdangle, RapidShapes_tdm_macrostate_1, RapidShapes_tdm_macrostate_2, RapidShapes_tdm_macrostate_3, RapidShapes_tdm_macrostate_4, RapidShapes_tdm_macrostate_5, RapidShapes_tdm_microstate_1, RapidShapes_tdm_microstate_2, RapidShapes_tdm_microstate_3, RapidShapes_tdm_microstate_4, RapidShapes_tdm_microstate_5, RapidShapes_tdm_nodangle_1, RapidShapes_tdm_nodangle_2, RapidShapes_tdm_nodangle_3, RapidShapes_tdm_nodangle_4, RapidShapes_tdm_nodangle_5, RapidShapes_tdm_overdangle_1, RapidShapes_tdm_overdangle_2, RapidShapes_tdm_overdangle_3, RapidShapes_tdm_overdangle_4, RapidShapes_tdm_overdangle_5, addRNAoptions.pl, gapc, tdmwrapper |
|
GITHUB
|
quay.io/biocontainers/rapifilt |
shpc-registry automated BioContainers addition for rapifilt |
rapifilt |
|
GITHUB
|
quay.io/biocontainers/rapmap |
shpc-registry automated BioContainers addition for rapmap |
rapmap |
|
GITHUB
|
quay.io/biocontainers/rappas |
shpc-registry automated BioContainers addition for rappas |
RAPPAS.jar, phyml, phyml-mpi, phyrex, phytime, rappas, aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info, opal_wrapper, orte-clean, orte-info, orte-server |
|
GITHUB
|
quay.io/biocontainers/rapsearch |
shpc-registry automated BioContainers addition for rapsearch |
prerapsearch, rapsearch |
|
GITHUB
|
quay.io/biocontainers/raptor |
shpc-registry automated BioContainers addition for raptor |
raptor |
|
GITHUB
|
quay.io/biocontainers/rasusa |
shpc-registry automated BioContainers addition for rasusa |
rasusa |
|
GITHUB
|
quay.io/biocontainers/ratatosk |
singularity registry hpc automated addition for ratatosk |
Ratatosk |
|
GITHUB
|
quay.io/biocontainers/ratt |
shpc-registry automated BioContainers addition for ratt |
ratt, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot |
|
GITHUB
|
quay.io/biocontainers/raven-assembler |
shpc-registry automated BioContainers addition for raven-assembler |
raven |
|
GITHUB
|
quay.io/biocontainers/rawtools |
shpc-registry automated BioContainers addition for rawtools |
aprofutil, csc, csi, illinkanalyzer, mono-hang-watchdog, rawtools.sh, vbc, mono-package-runtime, sgen-grep-binprot, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr |
|
GITHUB
|
quay.io/biocontainers/raxml-ng |
shpc-registry automated BioContainers addition for raxml-ng |
raxml-ng, raxml-ng-mpi, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun |
|
GITHUB
|
quay.io/biocontainers/raxml |
shpc-registry automated BioContainers addition for raxml |
|
|
GITHUB
|
quay.io/biocontainers/ray |
shpc-registry automated BioContainers addition for ray |
Ray, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun |
|
GITHUB
|
quay.io/biocontainers/razers3 |
shpc-registry automated BioContainers addition for razers3 |
razers3 |
|
GITHUB
|
quay.io/biocontainers/rbpbench |
singularity registry hpc automated addition for rbpbench |
bed2fasta, centrimo-plots, corepack, dtc, fasta-holdout-set, fasta-re-match, index-fasta-file, meme-chip_html_to_tsv, momo, prosite2meme, rbpbench, sea, simplepp, streme, streme_xml_to_html, tgene, tts, xstreme, xstreme_html_to_tsv, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip, compute-prior-dist, compute-uniform-priors, create-priors, dreme, dreme_xml_to_html, dreme_xml_to_txt, dust, elm2meme, fasta-center, fasta-dinucleotide-shuffle, fasta-fetch, fasta-get-markov, fasta-grep, fasta-hamming-enrich, fasta-make-index |
|
GITHUB
|
quay.io/biocontainers/rcorrector |
shpc-registry automated BioContainers addition for rcorrector |
rcorrector, run_rcorrector.pl, jellyfish, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/rcsbsearch |
shpc-registry automated BioContainers addition for rcsbsearch |
jsonschema, normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/rcx-tk |
singularity registry hpc automated addition for rcx-tk |
dmypy, mypy, mypyc, rcx_tk, stubgen, stubtest, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fonttools, pyftmerge, pyftsubset, ttx, tjbench, brotli, opj_compress, opj_decompress, opj_dump |
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GITHUB
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quay.io/biocontainers/rd-analyzer |
shpc-registry automated BioContainers addition for rd-analyzer |
RD-Analyzer-extended.py, RD-Analyzer.py, qualfa2fq.pl, xa2multi.pl, bwa, bcftools, vcfutils.pl, python2-config, python2.7-config, python2, python2.7, idle |
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GITHUB
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quay.io/biocontainers/rdeval |
singularity registry hpc automated addition for rdeval |
rdeval |
|
GITHUB
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quay.io/biocontainers/rdfextras |
shpc-registry automated BioContainers addition for rdfextras |
csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, python2-config, python2.7-config, python2, python2.7, idle |
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GITHUB
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quay.io/biocontainers/rdflib-jsonld |
shpc-registry automated BioContainers addition for rdflib-jsonld |
csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, easy_install-2.7, python2, python2.7, idle, python-config |
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GITHUB
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quay.io/biocontainers/rdflib |
shpc-registry automated BioContainers addition for rdflib |
|
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GITHUB
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quay.io/biocontainers/rdkit |
shpc-registry automated BioContainers addition for rdkit |
f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc |
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GITHUB
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quay.io/biocontainers/rdock |
shpc-registry automated BioContainers addition for rdock |
babel, ht_protocol_finder.pl, make_grid.csh, obchiral, rbcalcgrid, rbcavity, rbdock, rblist, rbmoegrid, run_rbdock.pl, run_rbscreen.pl, sdfield, sdfilter, sdmodify, sdreport, sdrmsd, sdsort, sdsplit, sdtether, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop |
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GITHUB
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quay.io/biocontainers/rdp-readseq |
shpc-registry automated BioContainers addition for rdp-readseq |
ReadSeq, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
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quay.io/biocontainers/rdp_classifier |
shpc-registry automated BioContainers addition for rdp_classifier |
rdp_classifier, giffilter, gifsponge, gifecho, gifinto, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink |
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GITHUB
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quay.io/biocontainers/rdptools |
shpc-registry automated BioContainers addition for rdptools |
AbundanceStats, AlignmentTools, Clustering, FrameBot, KmerFilter, ProbeMatch, ReadSeq, SeqFilters, SequenceMatch, classifier, hmmgs, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
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GITHUB
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quay.io/biocontainers/read-it-and-keep |
shpc-registry automated BioContainers addition for read-it-and-keep |
readItAndKeep |
|
GITHUB
|
quay.io/biocontainers/read2tree |
singularity registry hpc automated addition for read2tree |
addr2line, ar, as, c++filt, dwp, elfedit, gold, gprof, ld, ld.bfd, ld.gold, ngm, ngm-core, ngm-core-debug, ngm-debug, ngm-log, ngm-utils, ngm-utils-debug, ngmlr, nm, objcopy, objdump, oclTool, ranlib, read2tree, readelf, size, strings, strip, iqtree2, mpg123, mpg123-id3dump, mpg123-strip, orc-bugreport, orcc, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, libgcrypt-config, mpicalc, yat2m, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, iqtree, attr, balsam, getfattr |
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GITHUB
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quay.io/biocontainers/readfq |
shpc-registry automated BioContainers addition for readfq |
readfq |
|
GITHUB
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quay.io/biocontainers/reads2graph |
singularity registry hpc automated addition for reads2graph |
reads2graph, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
|
quay.io/biocontainers/readseq |
shpc-registry automated BioContainers addition for readseq |
readseq, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/readucks |
shpc-registry automated BioContainers addition for readucks |
readucks, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/reago |
shpc-registry automated BioContainers addition for reago |
2to3-3.4, easy_install-3.4, idle3.4, pydoc3.4, python3.4, python3.4-config, python3.4m, python3.4m-config, pyvenv-3.4, reago.py, tclsh8.5, wish8.5, pyvenv |
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GITHUB
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quay.io/biocontainers/real |
shpc-registry automated BioContainers addition for real |
real |
|
GITHUB
|
quay.io/biocontainers/realphy |
shpc-registry automated BioContainers addition for realphy |
Manual_May25_2020.pdf, REALPHY_v113, RealPhy_v113.jar, realphy, metadata_conda_debug.yaml, build_env_setup.sh, conda_build.sh, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink |
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GITHUB
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quay.io/biocontainers/reaper |
shpc-registry automated BioContainers addition for reaper |
minion, reaper, swan, tally |
|
GITHUB
|
quay.io/biocontainers/rebaler |
shpc-registry automated BioContainers addition for rebaler |
rebaler, racon, rampler, racon_wrapper, paftools.js, minimap2, k8, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8 |
|
GITHUB
|
quay.io/biocontainers/rebar |
singularity registry hpc automated addition for rebar |
rebar |
|
GITHUB
|
quay.io/biocontainers/recalladapters |
shpc-registry automated BioContainers addition for recalladapters |
recalladapters |
|
GITHUB
|
quay.io/biocontainers/recentrifuge |
shpc-registry automated BioContainers addition for recentrifuge |
rcf, refasplit, remock, retaxdump, retest, rextract, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, img2webp, cwebp, dwebp, gif2webp |
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GITHUB
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quay.io/biocontainers/recgraph |
singularity registry hpc automated addition for recgraph |
recgraph |
|
GITHUB
|
quay.io/biocontainers/recognizer |
shpc-registry automated BioContainers addition for recognizer |
ktClassifyHits, ktImportHits, recognizer.py, ktClassifyBLAST, ktGetContigMagnitudes, ktGetLCA, ktGetLibPath, ktGetTaxIDFromAcc, ktGetTaxInfo, ktImportBLAST, ktImportDiskUsage, ktImportEC, ktImportFCP |
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GITHUB
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quay.io/biocontainers/recon |
shpc-registry automated BioContainers addition for recon |
edgeredef, eledef, eleredef, famdef, imagespread |
|
GITHUB
|
quay.io/biocontainers/recontig |
shpc-registry automated BioContainers addition for recontig |
recontig |
|
GITHUB
|
quay.io/biocontainers/recycler |
shpc-registry automated BioContainers addition for recycler |
get_simple_cycs.py, make_fasta_from_fastg.py, recycle.py, nosetests, guess-ploidy.py, plot-roh.py, run-roh.pl, f2py2, f2py2.7, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl |
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GITHUB
|
quay.io/biocontainers/red |
shpc-registry automated BioContainers addition for red |
Red |
|
GITHUB
|
quay.io/biocontainers/reduce |
singularity registry hpc automated addition for reduce |
reduce, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/redundans |
singularity registry hpc automated addition for redundans |
FastaIndex.py, GapCloser, denovo.py, fasta-nr, fasta2homozygous.py, fasta2qc.py, fasta2scaffold.py, fasta2split.py, fasta_stats.py, fastq-interleave, fastq2fasta.py, fastq2insert_size.py, fastq2mates.py, fastq2shuffled.py, fastq2sspace.py, filterReads.py, gfastats, k8-Linux, last-dotplot, last-map-probs, last-pair-probs, last-postmask, last-split, last-split2symmetric.py, last-split5, last-train, lastal, lastal5, lastdb, lastdb5, maf-convert, maf-cut, maf-join, maf-sort, maf-swap, meryl-analyze, meryl-import, meryl-lookup, meryl-simple, merylqury2analysis.py, parallel-fasta, parallel-fastq, platanus, redundans.py, skip_selfmatches.py, snap-aligner, last-merge-batches, miniasm, minidot, meryl, hb-info, sdust, qualfa2fq.pl, xa2multi.pl, k8, paftools.js, minimap2, bwa, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10 |
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GITHUB
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quay.io/biocontainers/referee |
singularity registry hpc automated addition for referee |
referee.py, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim |
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GITHUB
|
quay.io/biocontainers/referenceseeker |
shpc-registry automated BioContainers addition for referenceseeker |
delta2vcf, referenceseeker, referenceseeker_db, igzip, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, pbunzip2, pbzcat, pbzip2, combineMUMs |
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GITHUB
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quay.io/biocontainers/reffinder |
singularity registry hpc automated addition for reffinder |
refFinder |
|
GITHUB
|
quay.io/biocontainers/refgenconf |
shpc-registry automated BioContainers addition for refgenconf |
py.test, pytest, tqdm, futurize, pasteurize, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8 |
|
GITHUB
|
quay.io/biocontainers/refgenie |
shpc-registry automated BioContainers addition for refgenie |
import_igenome, refgenie, py.test, pytest, faidx, tqdm, futurize, pasteurize, f2py3.8, chardetect, 2to3-3.8, idle3.8 |
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GITHUB
|
quay.io/biocontainers/refgenieserver |
shpc-registry automated BioContainers addition for refgenieserver |
dotenv, refgenieserver, uvicorn, watchgod, cmark, py.test, pytest, jsonschema, pygmentize, futurize, pasteurize, chardetect, 2to3-3.9, idle3.9 |
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GITHUB
|
quay.io/biocontainers/refinem |
shpc-registry automated BioContainers addition for refinem |
aalookup_unit_test, aascan_unit_test, align_format_unit_test, bdbloader_unit_test, bl2seq_unit_test, blast_format_unit_test, blast_services_unit_test, blast_unit_test, blastdb_format_unit_test, blastdiag_unit_test, blastengine_unit_test, blastextend_unit_test, blastfilter_unit_test, blasthits_unit_test, blastinput_unit_test, blastoptions_unit_test, blastsetup_unit_test, delta_unit_test, gapinfo_unit_test, gencode_singleton_unit_test, gene_info_unit_test, hspfilter_besthit_unit_test, hspfilter_culling_unit_test, hspstream_unit_test, ktClassifyHits, ktImportHits, linkhsp_unit_test, magicblast_unit_test, msa2pssm_unit_test, ntlookup_unit_test, ntscan_unit_test, optionshandle_unit_test, phiblast_unit_test, prelimsearch_unit_test, psibl2seq_unit_test, psiblast_iteration_unit_test, psiblast_unit_test, pssmcreate_unit_test, pssmenginefreqratios_unit_test, querydata_unit_test, queryinfo_unit_test, redoalignment_unit_test, refinem, remote_blast_unit_test, rps_unit_test, scoreblk_unit_test, search_strategy_unit_test, seqdb_unit_test, seqinfosrc_unit_test, seqsrc_unit_test, setupfactory_unit_test, split_query_unit_test, stat_unit_test, subj_ranges_unit_test, traceback_unit_test, tracebacksearch_unit_test, uniform_search_unit_test, version_reference_unit_test, writedb_unit_test, ktClassifyBLAST, ktGetContigMagnitudes, ktGetLCA, ktGetLibPath, ktGetTaxIDFromAcc, ktGetTaxInfo, ktImportBLAST, ktImportDiskUsage, ktImportEC, ktImportFCP |
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GITHUB
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quay.io/biocontainers/reframed |
singularity registry hpc automated addition for reframed |
isympy, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, brotli, normalizer, python3.1 |
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GITHUB
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quay.io/biocontainers/refseq_masher |
shpc-registry automated BioContainers addition for refseq_masher |
|
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GITHUB
|
quay.io/biocontainers/regenie |
shpc-registry automated BioContainers addition for regenie |
regenie |
|
GITHUB
|
quay.io/biocontainers/regex |
shpc-registry automated BioContainers addition for regex |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
|
quay.io/biocontainers/regional |
shpc-registry automated BioContainers addition for regional |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc, tificc |
|
GITHUB
|
quay.io/biocontainers/regtools |
shpc-registry automated BioContainers addition for regtools |
regtools |
|
GITHUB
|
quay.io/biocontainers/relion |
singularity registry hpc automated addition for relion |
relion_align_symmetry, relion_autopick, relion_autopick_mpi, relion_backproject_2d, relion_batchrun, relion_batchrun_mpi, relion_class_ranker, relion_class_ranker.py, relion_class_ranker_default_model.pt, relion_convert_star, relion_convert_to_tiff, relion_convert_to_tiff_mpi, relion_ctf_mask_test, relion_ctf_refine, relion_ctf_refine_mpi, relion_ctf_toolbox, relion_delete_blobs_2d, relion_demodulate, relion_estimate_gain, relion_external_reconstruct, relion_find_tiltpairs, relion_flex_analyse, relion_flex_analyse_mpi, relion_helix_inimodel2d, relion_helix_toolbox, relion_helix_vote_classes, relion_image_handler, relion_import, relion_it.py, relion_localsym, relion_localsym_mpi, relion_mask_create, relion_merge_particles, relion_motion_refine, relion_motion_refine_mpi, relion_mrc2vtk, relion_particle_reposition, relion_particle_select, relion_particle_subtract, relion_particle_subtract_mpi, relion_particle_symmetry_expand, relion_pipeliner, relion_plot_delocalisation, relion_postprocess, relion_postprocess_mpi, relion_prepare_subtomo, relion_preprocess, relion_preprocess_mpi, relion_project, relion_qsub.csh, relion_reconstruct, relion_reconstruct_mpi, relion_refine, relion_refine_mpi, relion_run_ctffind, relion_run_ctffind_mpi, relion_run_motioncorr, relion_run_motioncorr_mpi, relion_schemegui.py, relion_schemer, relion_stack_create, relion_star_datablock_ctfdat, relion_star_datablock_singlefiles, relion_star_datablock_stack, relion_star_handler, relion_star_loopheader, relion_star_plottable, relion_star_printtable, relion_tiltpair_plot, relion_tomo_Wiener_divide, relion_tomo_add_spheres, relion_tomo_align, relion_tomo_align_mpi, relion_tomo_bin_stack, relion_tomo_catalogue_tomos, relion_tomo_compute_FCC, relion_tomo_convert_projections, relion_tomo_dark_erase, relion_tomo_delete_blobs, relion_tomo_discover_motif, relion_tomo_find_fiducials, relion_tomo_find_lattice, relion_tomo_fit_bfactors, relion_tomo_fit_blobs_3d, relion_tomo_import_particles, relion_tomo_import_tomograms, relion_tomo_local_particle_refine, relion_tomo_make_optimisation_set, relion_tomo_make_reference, relion_tomo_powspec, relion_tomo_predict_tilt_series, relion_tomo_reconstruct_particle, relion_tomo_reconstruct_particle_mpi, relion_tomo_reconstruct_tomogram, relion_tomo_refine_ctf, relion_tomo_refine_ctf_mpi, relion_tomo_refine_mag, relion_tomo_sample_manifold, relion_tomo_split_optics, relion_tomo_subtomo, relion_tomo_subtomo_mpi, relion_tomo_taper, relion_tomo_template_pick, relion_tomo_test, relion_tomo_tomo_ctf, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun, shmemcc, shmemfort, shmemrun, aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info, opal_wrapper, orte-clean, orte-info, orte-server, ortecc, orted |
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GITHUB
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quay.io/biocontainers/relocate2 |
shpc-registry automated BioContainers addition for relocate2 |
characterizer.pl, clean_false_positive.py, clean_pairs_memory.py, faToNib, fastq_split.pl, gfClient, gfServer, nibFrag, pslPretty, pslReps, pslSort, relocaTE2.py, relocaTE2_temp.py, relocaTE_absenceFinder.py, relocaTE_align.py, relocaTE_insertionFinder.py, relocaTE_trim.py, utility.py, varfilter.py, twoBitToFa, blat, twoBitInfo, faToTwoBit, seqtk, perl5.32.0, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build |
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GITHUB
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quay.io/biocontainers/remurna |
shpc-registry automated BioContainers addition for remurna |
remuRNA |
|
GITHUB
|
quay.io/biocontainers/rename |
shpc-registry automated BioContainers addition for rename |
rename, perl5.32.0, streamzip |
|
GITHUB
|
quay.io/biocontainers/renano |
shpc-registry automated BioContainers addition for renano |
renano |
|
GITHUB
|
quay.io/biocontainers/reneo |
singularity registry hpc automated addition for reneo |
jsondiff, jsonpatch, jsonpointer, reneo, mamba-package, conda2solv, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, bsdcat, bsdcpio, bsdtar, conda-env, cph, yte, plac_runner.py, docutils, pulptest, cbc, clp, humanfriendly, snakemake, snakemake-bash-completion, tabulate, jupyter-trust, jupyter |
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GITHUB
|
quay.io/biocontainers/renet2 |
shpc-registry automated BioContainers addition for renet2 |
bundle, bundler, racc, racc2y, renet2, y2racc, gdbm_dump, gdbm_load, gdbmtool, erb, gem, irb, rake, rdoc, ri, ruby |
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GITHUB
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quay.io/biocontainers/repaq |
shpc-registry automated BioContainers addition for repaq |
repaq |
|
GITHUB
|
quay.io/biocontainers/reparation_blast |
shpc-registry automated BioContainers addition for reparation_blast |
anomaly, build-fixed, build-icm, counts_in_region, crossmap, cs, entropy-profile, entropy-score, extract, fasta_clipping_histogram.pl, fasta_formatter, fasta_nucleotide_changer, fastq_masker, fastq_quality_boxplot_graph.sh, fastq_quality_converter, fastq_quality_filter, fastq_quality_trimmer, fastq_to_fasta, fastx_artifacts_filter, fastx_barcode_splitter.pl, fastx_clipper, fastx_collapser, fastx_nucleotide_distribution_graph.sh, fastx_nucleotide_distribution_line_graph.sh, fastx_quality_stats, fastx_renamer, fastx_reverse_complement, fastx_trimmer, fastx_uncollapser, findjuncs, g3-from-scratch.csh, g3-from-training.csh, g3-iterated.csh, get-motif-counts.awk, get_count_vectors, gff_parent_types, glim-diff.awk, glimmer3, long-orfs, make_wiggle, match-list-col.awk, metagene, multi-extract, not-acgt.awk, phase_by_size, psite, reformat_transcripts, reparation.pl, score-fixed, slidejuncs, start-codon-distrib, test_table_equality, uncovered, upstream-coords.awk, window-acgt, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv, psktool |
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GITHUB
|
quay.io/biocontainers/repdenovo |
shpc-registry automated BioContainers addition for repdenovo |
Assembly.py, BasicInfoPaser.py, ClassifyContigs.py, ContigsMerger, ExtractKmers.py, FilterAndScaffold.py, FilterPEReads.py, KmerCount.py, MergeContigs.py, TERefiner_1, Utility.py, main.py, velvetg, velveth, bamtools, jellyfish, qualfa2fq.pl, xa2multi.pl, bwa, 2to3-3.10, idle3.10, pydoc3.10 |
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GITHUB
|
quay.io/biocontainers/repeatmasker |
shpc-registry automated BioContainers addition for repeatmasker |
DateRepeats, DupMasker, ProcessRepeats, RM2Bed.py, RepeatMasker, RepeatProteinMask, buildRMLibFromEMBL.pl, buildSummary.pl, calcDivergenceFromAlign.pl, createRepeatLandscape.pl, dupliconToSVG.pl, getRepeatMaskerBatch.pl, maskFile.pl, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, trfMask, wublastToCrossmatch.pl, rmblastn, trf4.10.0-rc.2.linux64.exe, trf, blast_report, blastdb_convert, blastdb_path, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv |
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GITHUB
|
quay.io/biocontainers/repeatmodeler |
shpc-registry automated BioContainers addition for repeatmodeler |
BuildDatabase, DateRepeats, DupMasker, LAI, LTRPipeline, LTR_retriever, Linup, Ninja, ProcessRepeats, RM2Bed.py, Refiner, RepeatClassifier, RepeatMasker, RepeatModeler, RepeatProteinMask, RepeatScout, alignAndCallConsensus.pl, buildRMLibFromEMBL.pl, buildSummary.pl, build_lmer_table, calcDivergenceFromAlign.pl, compare-out-to-gff.prl, convert_MGEScan3.0.pl, convert_ltr_struc.pl, convert_ltrdetector.pl, createRepeatLandscape.pl, dupliconToSVG.pl, edgeredef, eledef, eleredef, famdef, filter-stage-1.prl, filter-stage-2.prl, generateSeedAlignments.pl, genometools-config, getRepeatMaskerBatch.pl, gt, imagespread, maskFile.pl, merge-lmer-tables.prl, nmerge, nseg, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, trfMask, viewMSA.pl, wublastToCrossmatch.pl, rmblastn, trf4.10.0-rc.2.linux64.exe, trf, twoBitToFa, blast_report, blastdb_convert, blastdb_path, twoBitInfo, faToTwoBit, FET.pl |
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GITHUB
|
quay.io/biocontainers/repeatscout |
shpc-registry automated BioContainers addition for repeatscout |
RepeatScout, build_lmer_table, compare-out-to-gff.prl, filter-stage-1.prl, filter-stage-2.prl, merge-lmer-tables.prl, nmerge, nseg, trf4.10.0-rc.2.linux64.exe, trf, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/repenrich |
shpc-registry automated BioContainers addition for repenrich |
RepEnrich.py, RepEnrich_setup.py, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect, perl5.32.0 |
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GITHUB
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quay.io/biocontainers/repic |
singularity registry hpc automated addition for repic |
mrcfile-header, mrcfile-validate, repic, tjbench, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tqdm, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/replidec |
singularity registry hpc automated addition for replidec |
Replidec, blastn_vdb, tblastn_vdb, aria2c, mmseqs, test_pcre, gawk-5.1.0, awk, gawk, f2py3.11, prodigal, hmmpgmd_shard, easel, esl-mixdchlet, edirect.py, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn |
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GITHUB
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quay.io/biocontainers/reportfunk |
singularity registry hpc automated addition for reportfunk |
baltic.py, class_definitions.py, custom_logger.py, io_functions.py, log_handler_handle.py, parsing_functions.py, prep_data_functions.py, report_functions.py, reportfunk, table_functions.py, time_functions.py, tree_functions.py, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/represent |
shpc-registry automated BioContainers addition for represent |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/req |
shpc-registry automated BioContainers addition for req |
REQ, giffilter, gifsponge, gifecho, gifinto, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink |
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GITHUB
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quay.io/biocontainers/requests-cache |
shpc-registry automated BioContainers addition for requests-cache |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/requests-mock |
shpc-registry automated BioContainers addition for requests-mock |
pbr, chardetect, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config |
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GITHUB
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quay.io/biocontainers/requests-toolbelt |
shpc-registry automated BioContainers addition for requests-toolbelt |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
|
quay.io/biocontainers/requests |
shpc-registry automated BioContainers addition for requests |
|
|
GITHUB
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quay.io/biocontainers/rerconverge |
singularity registry hpc automated addition for rerconverge |
f2py3.11, git2_cli, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, glpsol, pandoc, python3.1 |
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GITHUB
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quay.io/biocontainers/reseek |
singularity registry hpc automated addition for reseek |
reseek |
|
GITHUB
|
quay.io/biocontainers/reseq |
shpc-registry automated BioContainers addition for reseq |
plotDataStats.py, reseq, reseq-prepare-names.py, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/resfinder |
singularity registry hpc automated addition for resfinder |
download-db.sh, git_test.py, kma, kma_index, kma_shm, kma_update, run_resfinder.py, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, tabulate, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns |
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GITHUB
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quay.io/biocontainers/resistify |
singularity registry hpc automated addition for resistify |
resistify, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct, esl-histplot, esl-mask, esl-selectn, esl-seqrange, esl-seqstat, esl-sfetch, esl-shuffle, esl-ssdraw, esl-translate, esl-weight, esl-afetch, esl-reformat |
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GITHUB
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quay.io/biocontainers/resmico |
singularity registry hpc automated addition for resmico |
ccmake, cmake, cpack, ctest, ed2k-link, edonr256-hash, edonr512-hash, gost12-256-hash, gost12-512-hash, has160-hash, import_pb_to_tensorboard, ipython3.9, magnet-link, pathos_connect, portpicker, pox, ppserver, resmico, rhash, sfv-hash, tiger-hash, tth-hash, whirlpool-hash, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, get_objgraph, undill, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, pt2to3, ptdump, ptrepack, pttree, tensorboard, ipython3, ipython, pyrsa-decrypt, pyrsa-encrypt |
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GITHUB
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quay.io/biocontainers/retropath2_wrapper |
shpc-registry automated BioContainers addition for retropath2_wrapper |
filetype, normalizer, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/retry_decorator |
shpc-registry automated BioContainers addition for retry_decorator |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/revbayes |
shpc-registry automated BioContainers addition for revbayes |
rb, rb-mpi, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun |
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GITHUB
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quay.io/biocontainers/reveal |
shpc-registry automated BioContainers addition for reveal |
reveal, qhelpconverter, f2py2, f2py2.7, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner, repc |
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GITHUB
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quay.io/biocontainers/reviewer |
singularity registry hpc automated addition for reviewer |
REViewer, annot-tsv, htsfile, bgzip, tabix |
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GITHUB
|
quay.io/biocontainers/revoluzer |
singularity registry hpc automated addition for revoluzer |
amgr, anamed, comgen, compress, construct_triples, crex, deldup, dupdet, enumall, evoluzer, gdiff, grappaResultParser, ichar, identifySorting, ilp-rrrmt, intervals, its, median, mgrResultParser, normalize, nrex, phy2nex, pqplot, pqresolve, pqsplits, pqstat, revoluzer, revolver, robfould, sortVsPreserve, tdlmedian, tmrloc, treedegree, trex, distmat, uniq, test, gc, glpsol |
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GITHUB
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quay.io/biocontainers/revtrans |
shpc-registry automated BioContainers addition for revtrans |
mod_seqfiles.py, mod_translate.py, ncbi_genetic_codes.py, revtrans.py, revtrans_jarmo.py, translate.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/rfmix |
shpc-registry automated BioContainers addition for rfmix |
rfmix, simulate |
|
GITHUB
|
quay.io/biocontainers/rfplasmid |
shpc-registry automated BioContainers addition for rfplasmid |
checkm, rfplasmid, rppr, guppy, pplacer, dendropy-format, jellyfish, sumlabels.py, sumtrees.py, diamond, prodigal, hmmpgmd_shard |
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GITHUB
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quay.io/biocontainers/rgccacmd |
shpc-registry automated BioContainers addition for rgccacmd |
idn2, wget, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/rgi |
shpc-registry automated BioContainers addition for rgi |
ct-energy, ct2rnaml, filetype, h-num.pl, hybrid-min, hybrid-ss-min, kma, kma_index, kma_shm, kma_update, melt.pl, rgi, ss-count.pl, xml2-config.bak, dask-scheduler, dask-ssh, dask-worker, bamtools, bokeh, vcf_sample_filter.py, vcf_filter.py, vcf_melt, diamond |
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GITHUB
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quay.io/biocontainers/rgi_conda_dev |
shpc-registry automated BioContainers addition for rgi_conda_dev |
rgi, rgi_clean, rgi_jsonformat, rgi_jsontab, rgi_load, createfontdatachunk.py, enhancer.py, explode.py, gifmaker.py, painter.py, player.py, thresholder.py, viewer.py, pilconvert.py, pildriver.py |
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GITHUB
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quay.io/biocontainers/rgt |
shpc-registry automated BioContainers addition for rgt |
bed2associated_genes.py, bed2fasta.py, bigBedToBed, bigWigMerge, download-db.sh, emtools.py, expressionFromGenomicSet.py, geneAssociationZscore.py, geneOntologyFromBed.py, genesFromBed.py, havana_analysis.py, intersectGenomicSets.py, mapExpressionMotif.py, mapGeneNetwork.py, moods-dna.py, phylocsf_check.py, protectionScore.py, random_regions.py, rgt-TDF, rgt-THOR, rgt-filterVCF, rgt-hint, rgt-motifanalysis, rgt-tools.py, rgt-viz, setupGenomicData.py, setupLogoData.py, update_alias.py, wigToBigWig, bedGraphToBigWig, htseq-count, htseq-qa, bedToBigBed, vcf_sample_filter.py, vcf_filter.py, vcf_melt, natsort, my_print_defaults |
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GITHUB
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quay.io/biocontainers/rhocall |
shpc-registry automated BioContainers addition for rhocall |
rhocall, cyvcf2, coloredlogs, humanfriendly, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.9, opj_compress |
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GITHUB
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quay.io/biocontainers/rhotermpredict |
singularity registry hpc automated addition for rhotermpredict |
rhotermpredict, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/riassigner |
shpc-registry automated BioContainers addition for riassigner |
pint-convert, xml2-config.bak, numba, pycc, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, xslt-config |
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GITHUB
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quay.io/biocontainers/riblast |
singularity registry hpc automated addition for riblast |
RIblast |
|
GITHUB
|
quay.io/biocontainers/ribocode |
shpc-registry automated BioContainers addition for ribocode |
GTFupdate, ORFcount, RiboCode, RiboCode_onestep, metaplots, plot_orf_density, prepare_transcripts, pyfasta, createfontdatachunk.py, htseq-count, htseq-qa, enhancer.py, explode.py, gifmaker.py, painter.py, player.py, thresholder.py, viewer.py |
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GITHUB
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quay.io/biocontainers/ribocutter |
shpc-registry automated BioContainers addition for ribocutter |
ribocutter, igzip, pigz, unpigz, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/ribodetector |
singularity registry hpc automated addition for ribodetector |
onnxruntime_test, ribodetector, ribodetector_cpu, torchrun, isympy, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, coloredlogs, humanfriendly, protoc, tqdm, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/ribodiff |
shpc-registry automated BioContainers addition for ribodiff |
TE.py, qhelpconverter, f2py2, f2py2.7, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner, repc |
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GITHUB
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quay.io/biocontainers/ribolands |
singularity registry hpc automated addition for ribolands |
BarMap.py, DrTransformer.py, barriers, crnsimulator, crossrates.pl, fix_bar.pl, genPoHoLandscape, qd-config, saddle.pl, saddle2dot.pl, saddle2gml.pl, treekin, treeplot.pl, isympy, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex, RNAsnoop, RNAfold, Kinfold, RNALfold, RNAaliduplex, RNAalifold, RNAcofold, RNAdistance, RNAduplex, RNAeval |
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GITHUB
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quay.io/biocontainers/riboloco |
shpc-registry automated BioContainers addition for riboloco |
riboloco, riboloco_convert_gtf, riboloco_find_orfs, gffutils-cli, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, faidx, f2py3.9, opj_compress, opj_decompress, opj_dump |
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GITHUB
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quay.io/biocontainers/ribominer |
shpc-registry automated BioContainers addition for ribominer |
CoverageOfEachTrans, EnrichmentAnalysis, EnrichmentAnalysisForSingleTrans, ExtractSequenceCenteredOnAPosition, GCContent, GTFupdate, GetProteinCodingSequence, GetUTRSequences, LengthDistribution, MergeSampleDensitys, MetageneAnalysis, MetageneAnalysisForTheWholeRegions, ModifyHTseq, ORFcount, OutputTranscriptInfo, PausingScore, Periodicity, PlotEnrichmentRatio, PlotGCContent, PlotHydropathyCharge, PlotMetageneAnalysis, PlotMetageneAnalysisForTheWholeRegions, PlotPolarity, PlotRiboDensityAroundTriAAMotifs, PlotRiboDensityAtEachKindAAOrCodon, PlotTransCoverage, PolarityCalculation, ProcessPausingScore, RPFdist, ReadsLengthOfSpecificRegions, RiboCode, RiboCode_onestep, RiboDensityAroundTripleteAAMotifs, RiboDensityAtEachKindAAOrCodon, RiboDensityAtEachPosition, RiboDensityForSpecificRegion, RiboDensityOfDiffFrames, StatisticReadsOnDNAsContam, cAI, cAIPlot, enrichmentMeanDensity, htseq-count-barcodes, hydropathyCharge, metaplots, plot_orf_density, prepare_transcripts, pyfasta, pysamstats, tAI, tAIPlot, htseq-count, htseq-qa, pt2to3, ptdump, ptrepack, pttree, mirror_server, mirror_server_stop, futurize, pasteurize |
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GITHUB
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quay.io/biocontainers/riboplot |
shpc-registry automated BioContainers addition for riboplot |
assistant-qt4, designer-qt4, lconvert-qt4, linguist-qt4, lrelease-qt4, lupdate-qt4, moc-qt4, nosetests-2.7, pixeltool-qt4, pylupdate4, pyrcc4, pyuic4, qcollectiongenerator-qt4, qdbus-qt4, qdbuscpp2xml-qt4, qdbusviewer-qt4, qdbusxml2cpp-qt4, qdoc3-qt4, qhelpconverter-qt4, qhelpgenerator-qt4, qmake-qt4, qmlplugindump-qt4, qmlviewer-qt4, qt3to4-qt4, qtconfig-qt4, qttracereplay-qt4, rcc-qt4, ribocount, riboplot, uic-qt4, xmlpatterns-qt4, xmlpatternsvalidator-qt4, sip, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed |
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GITHUB
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quay.io/biocontainers/riboraptor |
shpc-registry automated BioContainers addition for riboraptor |
|
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GITHUB
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quay.io/biocontainers/riborex |
shpc-registry automated BioContainers addition for riborex |
idn2, wget, ncurses5-config, ncursesw5-config |
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GITHUB
|
quay.io/biocontainers/riboseed |
shpc-registry automated BioContainers addition for riboseed |
bwa-spades, corrector, dipspades, dipspades.py, hammer, icarus.py, ionhammer, metaquast, metaquast.py, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, ribo, scaffold_correction, seedRand.py, skesa, spades, prank, circos, circos.exe, compile.bat, compile.make, gddiag, glimmerhmm, glimmhmm.pl, list.modules, test.modules |
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GITHUB
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quay.io/biocontainers/riboseq-rust |
shpc-registry automated BioContainers addition for riboseq-rust |
rust_amino, rust_amino.bak, rust_codon, rust_codon.bak, rust_dipeptide, rust_dipeptide.bak, rust_nucleotide, rust_nucleotide.bak, rust_plot_transcript, rust_plot_transcript.bak, rust_predict_profiles, rust_predict_profiles.bak, rust_synergy, rust_synergy.bak, rust_tripeptide, rust_tripeptide.bak, qhelpconverter, guess-ploidy.py, plot-roh.py, run-roh.pl, f2py2, f2py2.7, color-chrs.pl, qwebengine_convert_dict, plot-vcfstats, canbusutil |
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GITHUB
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quay.io/biocontainers/riboseqc |
shpc-registry automated BioContainers addition for riboseqc |
pandoc-citeproc, pandoc, gio-launch-desktop, c89, c99 |
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GITHUB
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quay.io/biocontainers/ribotaper |
shpc-registry automated BioContainers addition for ribotaper |
Ribotaper.sh, Ribotaper_ORF_find.sh, create_annotations_files.bash, create_metaplots.bash, fasta-sanitize.pl, plot-ampliconstats, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools |
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GITHUB
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quay.io/biocontainers/ribotin |
singularity registry hpc automated addition for ribotin |
GraphAligner, MBG, liftoff, ribotin-ref, ribotin-verkko, gffutils-cli, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, sdust, k8, paftools.js, minimap2, activate-global-python-argcomplete, python-argcomplete-check-easy-install-script, register-python-argcomplete, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/ribotish |
shpc-registry automated BioContainers addition for ribotish |
ribotish, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, jpgicc |
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GITHUB
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quay.io/biocontainers/ribotools |
singularity registry hpc automated addition for ribotools |
STAR-avx, STAR-avx2, STAR-plain, STAR-sse3, STAR-sse4.1, STAR-ssse3, STARlong-avx, STARlong-avx2, STARlong-plain, STARlong-sse3, STARlong-sse4.1, STARlong-ssse3, add-mygene-info-to-orfs, alignment-workflow, bam-to-wiggle, bed12-to-gtf, bedx-to-bedy, call-htseq-count, cmdstan_model, collect-read-length-orf-profiles, compile-rpbp-models, convert-ccds-to-bed, count-aligned-reads, count-reads, create-base-genome-profile, create-mygene-report, create-orf-profiles, create-read-length-orf-profiles, dash-update-components, dna-to-aa, download-srr-files, estimate-metagene-profile-bayes-factors, estimate-orf-bayes-factors, extract-bed-sequences, extract-cds-coordinates, extract-metagene-profiles, extract-orf-coordinates, extract-orf-profiles, fasta-to-fastq, fastq-pe-dedupe, filter-bam-by-ids, filter-nonunique-peptide-matches, fix-all-bed-files, flexbar, genl-ctrl-list, geo2fastq, get-all-bam-periodic, get-all-orf-peptide-matches, get-all-read-filtering-counts, get-all-utrs, get-gtf-from-predictions, get-orf-peptide-matches, get-read-length-distribution, get-ribo-periodic, get-sample-table, get_gprof, gtf-to-bed12, idiag-socket-details, install_cmdstan, install_cxx_toolchain, isort-identify-imports, join-long-chromosomes, keep-ribo-periodic, label-orfs, merge-isoforms, merge-replicate-orf-profiles, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave, nl-link-ifindex2name, nl-link-list, nl-link-name2ifindex, nl-link-release, nl-link-set, nl-link-stats, nl-list-caches, nl-list-sockets, nl-monitor, nl-neigh-add, nl-neigh-delete, nl-neigh-list, nl-neightbl-list, nl-nh-list, nl-pktloc-lookup, nl-qdisc-add, nl-qdisc-delete, nl-qdisc-list, nl-route-add, nl-route-delete, nl-route-get, nl-route-list, nl-rule-list, nl-tctree-list, nl-util-addr, pandoc-lua, parmed, predict-translated-orfs, prepare-rpbp-genome, protoc-25.2.0, pyensembl, pylint-config, remove-duplicate-bed-entries, remove-duplicate-sequences, remove-multimapping-reads, reorder-fasta, rpbp-predictions-dashboard, rpbp-profile-construction-dashboard, run-all-rpbp-instances, run-bowtie, run-dea, run-htseq-workflow, run-rpbp-pipeline, run-signalp, run-tea, run-tmhmm, select-final-prediction-set, select-periodic-offsets, split-bed12-blocks, split-long-chromosomes, subtract-bed, summarize-rpbp-predictions, summarize-rpbp-profile-construction, visualize-metagene-profile-bayes-factor, visualize-orf-type-metagene-profiles, isort, pylint, pyreverse, symilar, annot-tsv, renderer, dash-generate-components, git2, htseq-count-barcodes, cmtime, dask, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, mckey, rcopy, rdma_client, rdma_server, rdma_xclient |
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GITHUB
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quay.io/biocontainers/ribotricer |
shpc-registry automated BioContainers addition for ribotricer |
|
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GITHUB
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quay.io/biocontainers/ribowaltz |
shpc-registry automated BioContainers addition for ribowaltz |
|
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GITHUB
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quay.io/biocontainers/rich-msa |
singularity registry hpc automated addition for rich-msa |
markdown-it, pygmentize, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
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quay.io/biocontainers/rilseq |
shpc-registry automated BioContainers addition for rilseq |
RILseq_significant_regions.py, count_chimeric_reads_per_gene.py, generate_BED_file_of_endpoints.py, generate_genes_gff.py, generate_transcripts_gff.py, get_sequences_for_meme.py, map_chimeric_fragments.py, map_single_fragments.py, plot_circos_plot.py, plot_regions_interactions.py, qualfa2fq.pl, xa2multi.pl, bwa, fasta-sanitize.pl, plot-ampliconstats, f2py3.9, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl |
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GITHUB
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quay.io/biocontainers/ripcal |
singularity registry hpc automated addition for ripcal |
archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, deripcal, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gbf2fsa, gbf2ref, gm2ranges, gm2segs, ini2xml, jsonl2xml, just-first-key, nhance.sh, pma2apa, pma2pme, pmc2bioc, pmc2info, quote-grouped-elements, ref2pmid, refseq-nm-cds, ripcal, ripcal.bak, ripcal_summarise, scn2xml, stream-local, test-pmc-index, toml2xml, yaml2xml, gawk-5.3.0, gawkbug, TMalign, make_pscores.pl, poa, RNAmultifold, clustalo, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb, impala, makemat, megablast, blastn_vdb, tblastn_vdb, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin |
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GITHUB
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quay.io/biocontainers/ripser |
shpc-registry automated BioContainers addition for ripser |
ripser, ripser-coeff, ripser-debug |
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GITHUB
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quay.io/biocontainers/rjchallis-assembly-stats |
shpc-registry automated BioContainers addition for rjchallis-assembly-stats |
asm2stats.minmaxgc.pl, asm2stats.minmaxgc.pl.bak, asm2stats.pl, json_xs, perl5.26.2, podselect |
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GITHUB
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quay.io/biocontainers/rkp |
shpc-registry automated BioContainers addition for rkp |
RKP.py, create_kmers.sh, heatmap.R, map_kmers.sh, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical, bam2bed_sge, bam2bed_sge-float128 |
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GITHUB
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quay.io/biocontainers/rlpipes |
shpc-registry automated BioContainers addition for rlpipes |
RLPipes, abi-dump.2.11.0, abi-load, abi-load.2, abi-load.2.11.0, align-cache.2.11.0, align-info.2.11.0, bam-load.2.11.0, cache-mgr.2.11.0, ccextract, ccextract.2, ccextract.2.11.0, cg-load.2.11.0, fasterq-dump-orig.2.11.0, fasterq-dump.2.11.0, fastq-dump-orig.2.11.0, fastq-dump.2.11.0, fastq-load, fastq-load.2, fastq-load.2.11.0, helicos-load, helicos-load.2, helicos-load.2.11.0, illumina-dump.2.11.0, illumina-load, illumina-load.2, illumina-load.2.11.0, kar.2.11.0, kdbmeta.2.11.0, kget.2.11.0, latf-load.2.11.0, md5cp.2.11.0, pacbio-load, pacbio-load.2, pacbio-load.2.11.0, pacbio-loadxml, pacbio-loadxml.2, pacbio-loadxml.2.11.0, prefetch-orig.2.11.0, prefetch.2.11.0, pyfastx, pysradb, rcexplain.2.11.0, read-filter-redact.2.11.0, sam-dump-orig.2.11.0, sam-dump.2.11.0, sff-dump.2.11.0, sff-load, sff-load.2, sff-load.2.11.0, sra-pileup-orig.2.11.0, sra-pileup.2.11.0, sra-sort-cg.2.11.0, sra-sort.2.11.0, sra-stat.2.11.0, srapath-orig.2.11.0, srapath.2.11.0, sratools.2.11.0, srf-load, srf-load.2, srf-load.2.11.0, test-sra.2.11.0, vdb-config.2.11.0, vdb-copy.2.11.0, vdb-decrypt.2.11.0, vdb-diff.2.11.0, vdb-dump-orig.2.11.0, vdb-dump.2.11.0, vdb-encrypt.2.11.0, vdb-lock.2.11.0, vdb-passwd.2.11.0, vdb-unlock.2.11.0, vdb-validate.2.11.0, align-cache.2, md5cp.2, read-filter-redact.2, sra-sort-cg.2, vdb-diff.2, align-cache, fasterq-dump-orig, fastq-dump-orig, md5cp, prefetch-orig |
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GITHUB
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quay.io/biocontainers/rmap |
shpc-registry automated BioContainers addition for rmap |
bedoverlap, binreads, deadzones, mapsifter, rmap, rmap-pe, rmapbs, rmapbs-pe, sigoverlap, simreads, simreadsbs, simreadspe, extractseq |
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GITHUB
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quay.io/biocontainers/rmath4 |
singularity registry hpc automated addition for rmath4 |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/rmats |
shpc-registry automated BioContainers addition for rmats |
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GITHUB
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quay.io/biocontainers/rmats2sashimiplot |
shpc-registry automated BioContainers addition for rmats2sashimiplot |
index_gff, rmats2sashimiplot, sashimi_plot, f2py2, f2py2.7, fasta-sanitize.pl, shiftBed, plot-ampliconstats, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam |
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GITHUB
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quay.io/biocontainers/rmblast |
shpc-registry automated BioContainers addition for rmblast |
rmblastn, build.sh, common.go, rchive.go, blast_report, blastdb_convert, blastdb_path, setup-deps.log, setup.sh, xtract.go, certtool |
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GITHUB
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quay.io/biocontainers/rmetl |
shpc-registry automated BioContainers addition for rmetl |
ngmlr, rMETL, guess-ploidy.py, plot-roh.py, run-roh.pl, f2py2, f2py2.7, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, python2-config |
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GITHUB
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quay.io/biocontainers/rmlst_api |
singularity registry hpc automated addition for rmlst_api |
rmlst-api, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, normalizer, python3.1 |
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GITHUB
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quay.io/biocontainers/rna-cd |
shpc-registry automated BioContainers addition for rna-cd |
rna_cd-classify, rna_cd-train, qhelpconverter, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, qwebengine_convert_dict, plot-vcfstats, canbusutil, qgltf, qmlcachegen |
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GITHUB
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quay.io/biocontainers/rna-seqc |
shpc-registry automated BioContainers addition for rna-seqc |
rnaseqc |
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GITHUB
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quay.io/biocontainers/rnaalishapes |
singularity registry hpc automated addition for rnaalishapes |
RNAalishapes, RNAalishapes_eval_macrostate, RNAalishapes_eval_microstate, RNAalishapes_eval_nodangle, RNAalishapes_eval_overdangle, RNAalishapes_mea_microstate, RNAalishapes_mea_microstate_window, RNAalishapes_mea_nodangle, RNAalishapes_mea_nodangle_window, RNAalishapes_mea_overdangle, RNAalishapes_mea_overdangle_window, RNAalishapes_mfe_macrostate, RNAalishapes_mfe_macrostate_window, RNAalishapes_mfe_microstate, RNAalishapes_mfe_microstate_window, RNAalishapes_mfe_nodangle, RNAalishapes_mfe_nodangle_window, RNAalishapes_mfe_overdangle, RNAalishapes_mfe_overdangle_window, RNAalishapes_outside_microstate, RNAalishapes_outside_nodangle, RNAalishapes_outside_overdangle, RNAalishapes_pfall_macrostate, RNAalishapes_pfall_macrostate_window, RNAalishapes_pfall_microstate, RNAalishapes_pfall_microstate_window, RNAalishapes_pfall_nodangle, RNAalishapes_pfall_nodangle_window, RNAalishapes_pfall_overdangle, RNAalishapes_pfall_overdangle_window, RNAalishapes_probs_macrostate, RNAalishapes_probs_macrostate_window, RNAalishapes_probs_microstate, RNAalishapes_probs_microstate_window, RNAalishapes_probs_nodangle, RNAalishapes_probs_nodangle_window, RNAalishapes_probs_overdangle, RNAalishapes_probs_overdangle_window, RNAalishapes_rep_consensus, RNAalishapes_rep_mis, RNAalishapes_sample_macrostate, RNAalishapes_sample_macrostate_window, RNAalishapes_sample_microstate, RNAalishapes_sample_microstate_window, RNAalishapes_sample_nodangle, RNAalishapes_sample_nodangle_window, RNAalishapes_sample_overdangle, RNAalishapes_sample_overdangle_window, RNAalishapes_sci_macrostate, RNAalishapes_sci_microstate, RNAalishapes_sci_nodangle, RNAalishapes_sci_overdangle, RNAalishapes_shapes_macrostate, RNAalishapes_shapes_macrostate_window, RNAalishapes_shapes_microstate, RNAalishapes_shapes_microstate_window, RNAalishapes_shapes_nodangle, RNAalishapes_shapes_nodangle_window, RNAalishapes_shapes_overdangle, RNAalishapes_shapes_overdangle_window, RNAalishapes_subopt_macrostate, RNAalishapes_subopt_macrostate_window, RNAalishapes_subopt_microstate, RNAalishapes_subopt_microstate_window, RNAalishapes_subopt_nodangle, RNAalishapes_subopt_nodangle_window, RNAalishapes_subopt_overdangle, RNAalishapes_subopt_overdangle_window, addRNAoptions.pl, gapc |
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GITHUB
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quay.io/biocontainers/rnabloom |
shpc-registry automated BioContainers addition for rnabloom |
ntcard, nthll, rnabloom, racon, rampler, racon_wrapper, cups-config, ippeveprinter, ipptool, sdust, paftools.js, minimap2, k8 |
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GITHUB
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quay.io/biocontainers/rnablueprint |
shpc-registry automated BioContainers addition for rnablueprint |
RNAblueprint, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/rnabob |
shpc-registry automated BioContainers addition for rnabob |
rnabob |
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GITHUB
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quay.io/biocontainers/rnabridge-align |
shpc-registry automated BioContainers addition for rnabridge-align |
rnabridge-align, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/rnabridge-denovo |
shpc-registry automated BioContainers addition for rnabridge-denovo |
Bifrost, rnabridge-denovo |
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GITHUB
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quay.io/biocontainers/rnachipintegrator |
shpc-registry automated BioContainers addition for rnachipintegrator |
RnaChipIntegrator, vba_extract.py, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/rnaclust |
shpc-registry automated BioContainers addition for rnaclust |
LocARNA_RNAz.pm, RNAclust.pl, RNAsoup, RNAz.pm, aln-seqs.pl, aln2fa.pl, alnsel.pl, average-dot.pl, dot2pp, exparna_p, exploc_p, gen-reliab-dot.pl, locarna, locarna-mea.pl, locarna-motif-scan, locarna_deviation, locarna_p, locarna_rnafold_pp, locarnap-predict-and-plot.pl, locarnap-realign-all.pl, locarnap-revcomp.pl, locarnap-revisit-RNAz-hits.pl, locarnap_fit, locarnate, mlocarna, mlocarna_nnames, pgma, plot-bmprobs, pp2dot, reliability-profile.pl, ribosum2cc, rnaclustAlignRange.pl, rnaclustCleanAln.pl, rnaclustDecodeTable, rnaclustScores2Dist.pl, rnasoup_consMFE.pl, sparse, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold |
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GITHUB
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quay.io/biocontainers/rnacode |
shpc-registry automated BioContainers addition for rnacode |
RNAcode |
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GITHUB
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quay.io/biocontainers/rnahybrid |
singularity registry hpc automated addition for rnahybrid |
RNAcalibrate, RNAeffective, RNAhybrid, bdftogd, gd2copypal, gd2togif, gd2topng, gdcmpgif, gdparttopng, gdtopng, giftogd2, pngtogd, pngtogd2, webpng, annotate, img2webp, cwebp, dwebp, gif2webp, gif2rgb, gifbuild, gifclrmp, giffix, giftext, giftool |
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GITHUB
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quay.io/biocontainers/rnalien |
shpc-registry automated BioContainers addition for rnalien |
LocARNA_RNAz.pm, RNAcentralHTTPRequest, RNAcentralHTTPRequest-bin, RNAcode, RNAlien, RNAlien-bin, RNAlienScan, RNAlienScan-bin, RNAlienStatistics, RNAlienStatistics-bin, RNAz, RNAz.pm, aln-seqs.pl, aln2fa.pl, alnsel.pl, average-dot.pl, benchmark-plot.R, cmsearchToBed, cmsearchToBed-bin, coloraln.pl, colorrna.pl, convertMaf.pl, dot2pp, exparna_p, exploc_p, extractMAFblock.pl, gen-reliab-dot.pl, locarna, locarna-mea.pl, locarna-motif-scan, locarna_deviation, locarna_mcc, locarna_p, locarna_rnafold_pp, locarnap-predict-and-plot.pl, locarnap-realign-all.pl, locarnap-revcomp.pl, locarnap-revisit-RNAz-hits.pl, locarnap_fit, locarnate, mafStats.pl, mlocarna, mlocarna_nnames, mpi.pl, plot-bmprobs, pp2dot, reliability-profile.pl, ribosum2cc, rnazAnnotate.pl, rnazBEDsort.pl, rnazBEDstats.pl, rnazBlast.pl, rnazCMsearch.pl, rnazCluster.pl, rnazFilter.pl, rnazIndex.pl, rnazMAF2BED.pl, rnazMaf2Coordinates.pl, rnazMafRenumberMaf.pl, rnazMafSplit.pl, rnazOutputSort.pl, rnazRandomizeAln.pl, rnazSelectSeqs.pl, rnazSliceAlnByPos.pl, rnazSort.pl, rnazWindow.pl, rnazWindow_gq.pl, sparse, stats2plot.pl, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold |
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GITHUB
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quay.io/biocontainers/rnamining |
singularity registry hpc automated addition for rnamining |
rnamining, xgboost, f2py3.8, normalizer, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/rnanorm |
singularity registry hpc automated addition for rnanorm |
rnanorm, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/rnaprot |
shpc-registry automated BioContainers addition for rnaprot |
RNAmultifold, bigWigAverageOverBed, gtf_extract_gene_regions.py, gtf_extract_transcript_regions.py, pyro4-check-config, pyro4-flameserver, pyro4-httpgateway, pyro4-ns, pyro4-nsc, pyro4-test-echoserver, rnaprot, torchrun, ushuffle, twoBitToFa, twoBitInfo, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin |
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GITHUB
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quay.io/biocontainers/rnaquast |
shpc-registry automated BioContainers addition for rnaquast |
PF00225_full.blocks.txt, PF00225_seed.blocks.txt, SplicedAlignment.pm, aa2nonred.pl, add_name_to_gff3.pl, aln2wig, atoiindex, augustify.py, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, bam2wig, bamToWig.py, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, busco, cdbfasta, cdbyank, cegma2gff.pl, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, cmetindex, compare_masking.pl, compileSpliceCands, computeFlankingRegion.pl, cpuid, createAugustusJoblist.pl, dbsnp_iit, del_from_prfl.pl, ensembl_genes, evalCGP.pl, eval_dualdecomp.pl, eval_multi_gtf.pl, executeTestCGP.py, exonerate2hints.pl, exoniphyDb2hints.pl, extractAnno.py, extractTranscriptEnds.pl, fa_coords, filter-ppx.pl, filterGenes.pl, filterGenesIn.pl, filterGenesIn_mRNAname.pl, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, findGffNamesInFasta.pl, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, generate_plot.py, get-genome, getAnnoFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, getSeq, get_loci_from_gb.pl, gff2gbSmallDNA.pl, gff2ps_mycustom, gff3_genes, gff3_introns, gff3_splicesites, gffGetmRNA.pl, gmap.nosimd, gmap.sse42, gmap_build, gmap_cat, gmap_process, gmapindex, gmapl, gmapl.nosimd, gmapl.sse42, gp2othergp.pl, gsnap, gsnap.nosimd, gsnap.sse42, gsnapl, gsnapl.nosimd, gsnapl.sse42, gtf2aa.pl, gtf2gff.pl, gtf_genes, gtf_introns, gtf_splicesites, gtf_transcript_splicesites, gth2gtf.pl, gvf_iit, hal2maf_split.pl, helpMod.pm, hmmc2, hmmerfm-exactmatch, iit_dump, iit_get, iit_store, indexdb_cat, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, load2sqlitedb, lp_solve, maf2conswig.pl, makeMatchLists.pl, makeUtrTrainingSet.pl, maskNregions.pl, md_coords, merge_masking.pl, metaeuk, moveParameters.pl, msa2prfl.pl, new_species.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, peptides2alternatives.pl, peptides2hints.pl, phastconsDB2hints.pl, polyA2hints.pl, pp_simScore, prints2prfl.pl, pslMap.pl, pslSort, psl_genes, psl_introns, psl_splicesites, randomSplit.pl, retroDB2hints.pl, rmRedundantHints.pl, rnaQUAST.py, run-sepp.sh, runAllSim4.pl, run_abundance.py, run_sepp.py, run_tipp.py, run_tipp_tool.py, run_upp.py, samMap.pl, sam_sort, scipiogff2gff.pl, seppJsonMerger.jar, setStopCodonFreqs.pl, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, snpindex, splitMfasta.pl, split_sequences.py, split_wiggle.pl, summarizeACGTcontent.pl, transMap2hints.pl, trindex, uniquePeptides.pl, utrgff2gbrowse.pl, utrrnaseq, vcf_iit, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, yaml2gff.1.4.pl, augustus, bam2hints, etraining, fastBlockSearch, filterBam, gmap, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign |
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GITHUB
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quay.io/biocontainers/rnaredprint |
shpc-registry automated BioContainers addition for rnaredprint |
RNARedPrint, RNARedPrintSampler.py, RNARedPrintStructure.py, RNAmultifold, calcprobs.py, design-energyshift.py, design-multistate.py, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold |
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GITHUB
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quay.io/biocontainers/rnasamba |
shpc-registry automated BioContainers addition for rnasamba |
rnasamba, theano-cache, theano-nose, freeze_graph, mako-render, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard |
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GITHUB
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quay.io/biocontainers/rnashapes |
shpc-registry automated BioContainers addition for rnashapes |
RNAshapes, RNAshapes_eval_macrostate, RNAshapes_eval_microstate, RNAshapes_eval_nodangle, RNAshapes_eval_overdangle, RNAshapes_mea_microstate, RNAshapes_mea_microstate_window, RNAshapes_mea_nodangle, RNAshapes_mea_nodangle_window, RNAshapes_mea_overdangle, RNAshapes_mea_overdangle_window, RNAshapes_mfe_macrostate, RNAshapes_mfe_macrostate_window, RNAshapes_mfe_microstate, RNAshapes_mfe_microstate_window, RNAshapes_mfe_nodangle, RNAshapes_mfe_nodangle_window, RNAshapes_mfe_overdangle, RNAshapes_mfe_overdangle_window, RNAshapes_outside_microstate, RNAshapes_outside_nodangle, RNAshapes_outside_overdangle, RNAshapes_pfall_macrostate, RNAshapes_pfall_macrostate_window, RNAshapes_pfall_microstate, RNAshapes_pfall_microstate_window, RNAshapes_pfall_nodangle, RNAshapes_pfall_nodangle_window, RNAshapes_pfall_overdangle, RNAshapes_pfall_overdangle_window, RNAshapes_probing_macrostate, RNAshapes_probing_macrostate_window, RNAshapes_probing_microstate, RNAshapes_probing_microstate_window, RNAshapes_probing_nodangle, RNAshapes_probing_nodangle_window, RNAshapes_probing_overdangle, RNAshapes_probing_overdangle_window, RNAshapes_probs_macrostate, RNAshapes_probs_macrostate_window, RNAshapes_probs_microstate, RNAshapes_probs_microstate_window, RNAshapes_probs_nodangle, RNAshapes_probs_nodangle_window, RNAshapes_probs_overdangle, RNAshapes_probs_overdangle_window, RNAshapes_sample_macrostate, RNAshapes_sample_macrostate_window, RNAshapes_sample_microstate, RNAshapes_sample_microstate_window, RNAshapes_sample_nodangle, RNAshapes_sample_nodangle_window, RNAshapes_sample_overdangle, RNAshapes_sample_overdangle_window, RNAshapes_shapes_macrostate, RNAshapes_shapes_macrostate_window, RNAshapes_shapes_microstate, RNAshapes_shapes_microstate_window, RNAshapes_shapes_nodangle, RNAshapes_shapes_nodangle_window, RNAshapes_shapes_overdangle, RNAshapes_shapes_overdangle_window, RNAshapes_subopt_macrostate, RNAshapes_subopt_macrostate_window, RNAshapes_subopt_microstate, RNAshapes_subopt_microstate_window, RNAshapes_subopt_nodangle, RNAshapes_subopt_nodangle_window, RNAshapes_subopt_overdangle, RNAshapes_subopt_overdangle_window, addRNAoptions.pl, gapc, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/rnasketch |
shpc-registry automated BioContainers addition for rnasketch |
RNAblueprint, design-cofold.py, design-energyshift.py, design-generategraphml.py, design-ligandswitch.py, design-multistate.py, design-printgraphml.py, design-redprint-multistate.py, design-thermoswitch.py, RNAdos, igraph, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt |
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GITHUB
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quay.io/biocontainers/rnasnp |
shpc-registry automated BioContainers addition for rnasnp |
RNAsnp |
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GITHUB
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quay.io/biocontainers/rnastructure |
shpc-registry automated BioContainers addition for rnastructure |
AccessFold, AllSub, CircleCompare, CycleFold, DuplexFold, DuplexFold-smp, DynalignDotPlot, EDcalculator, EDcalculator-smp, ETEcalculator, ETEcalculator-smp, EnergyPlot, EnsembleEnergy, Fold, Fold-smp, MaxExpect, MaxExpect-smp, NAPSS, OligoWalk, PARTS, ProbKnot, ProbKnot-smp, ProbScan, ProbabilityPlot, ProbablePair, ProbablePair-smp, RemovePseudoknots, RemovePseudoknots-smp, Rsample, Rsample-smp, ShapeKnots, ShapeKnots-smp, StructureProb, StructureProb-smp, SymmetryTester, TurboFold, TurboFold-smp, TurboHomology, bifold, bifold-smp, bipartition, bipartition-smp, ct2dot, design, dot2ct, draw, dynalign, dynalign-smp, dynalign_ii, dynalign_ii-smp, efn2, efn2-smp, multilign, multilign-smp, oligoscreen, oligoscreen-smp, orega, orega-smp, partition, partition-smp, phmm, refold, scorer, stochastic, stochastic-smp, validate |
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GITHUB
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quay.io/biocontainers/rnavirhost |
singularity registry hpc automated addition for rnavirhost |
rnavirhost, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gbf2fsa, gbf2ref, gm2ranges, gm2segs, ini2xml, jsonl2xml |
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GITHUB
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quay.io/biocontainers/rnaz |
shpc-registry automated BioContainers addition for rnaz |
RNAz, rnazAnnotate.pl, rnazBEDsort.pl, rnazBEDstats.pl, rnazBlast.pl, rnazCluster.pl, rnazFilter.pl, rnazIndex.pl, rnazMAF2BED.pl, rnazRandomizeAln.pl, rnazSelectSeqs.pl, rnazSort.pl, rnazWindow.pl, perl5.26.2, podselect |
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GITHUB
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quay.io/biocontainers/rnftools |
shpc-registry automated BioContainers addition for rnftools |
art_454, art_SOLiD, art_illumina, cairosvg, curesim, dwgsim, dwgsim_eval, mason_frag_sequencing, mason_genome, mason_materializer, mason_methylation, mason_simulator, mason_splicing, mason_variator, rnftools, svg42pdf, gnuplot, gifecho, gifinto, gdlib-config, snakemake, snakemake-bash-completion, b2sum, base32, base64, basename |
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GITHUB
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quay.io/biocontainers/roadies |
singularity registry hpc automated addition for roadies |
hmmeralign, hmmerbuild, mashtree, mashtree_bootstrap.pl, mashtree_cluster.pl, mashtree_init.pl, mashtree_jackknife.pl, mashtree_wrapper_deprecated.pl, min_abundance_finder.pl, opal.jar, quicktree, raxml, raxmlp, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex, rst2xml, run_pasta.py, run_pasta_gui.py, run_seqtools.py, treeshrink, bsmp2info, eido, fsa2xml, gbf2info, just-top-hits, raxml-ng, raxml-ng-mpi, systematic-mutations, hmmc2, hmmerfm-exactmatch, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, prank, TMalign, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, make_pscores.pl, protoc-25.3.0, poa, gawk-5.3.0 |
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GITHUB
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quay.io/biocontainers/roary |
shpc-registry automated BioContainers addition for roary |
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GITHUB
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quay.io/biocontainers/roary2fripan.py |
shpc-registry automated BioContainers addition for roary2fripan.py |
roary2fripan.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/robust-bias-aware |
singularity registry hpc automated addition for robust-bias-aware |
robust-bias-aware, pybind11-config, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/rock |
singularity registry hpc automated addition for rock |
rock |
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GITHUB
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quay.io/biocontainers/rodeo |
shpc-registry automated BioContainers addition for rodeo |
My_Record.py, config_parser.py, dtc, enr, entrez_utils.py, fasta-from-bed, fasta-re-match, hmmer_utils.py, index-fasta-file, main_html_generator.py, meme-chip_html_to_tsv, momo, nulltype_module.py, record_processing.py, ripp_html_generator.py, rodeo2, rodeo_main.py, streme, streme_xml_to_html, tgene, timeout_decorator.py, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip |
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GITHUB
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quay.io/biocontainers/roguenarok |
shpc-registry automated BioContainers addition for roguenarok |
RogueNaRok, RogueNaRok-parallel, rnr-lsi, rnr-mast, rnr-prune, rnr-tii |
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GITHUB
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quay.io/biocontainers/rop |
shpc-registry automated BioContainers addition for rop |
bam2fastx, bam_merge, bed_to_juncs, contig_to_chr_coords, fasta_clipping_histogram.pl, fasta_formatter, fasta_nucleotide_changer, fastq_masker, fastq_quality_boxplot_graph.sh, fastq_quality_converter, fastq_quality_filter, fastq_quality_trimmer, fastq_to_fasta, fastx_artifacts_filter, fastx_barcode_splitter.pl, fastx_clipper, fastx_collapser, fastx_nucleotide_distribution_graph.sh, fastx_nucleotide_distribution_line_graph.sh, fastx_quality_stats, fastx_renamer, fastx_reverse_complement, fastx_trimmer, fastx_uncollapser, fix_map_ordering, gtf_juncs, gtf_to_fasta, juncs_db, long_spanning_reads, map2gtf, prep_reads, rop, sam_juncs, samtools_0.1.18, segment_juncs, sra_to_solid, tophat, tophat-fusion-post, tophat2, tophat_reports, nosetests, jellyfish, CA.pm, cacert.pem, index-themes, cygdb, cython, cythonize, fetch-extras, go.mod |
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GITHUB
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quay.io/biocontainers/ropebwt3 |
singularity registry hpc automated addition for ropebwt3 |
ropebwt3 |
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GITHUB
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quay.io/biocontainers/rosella |
shpc-registry automated BioContainers addition for rosella |
remove_minimap2_duplicated_headers, rosella, starcode, parsort, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh, env_parallel.pdksh |
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GITHUB
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quay.io/biocontainers/rotate |
singularity registry hpc automated addition for rotate |
composition, rotate |
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GITHUB
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quay.io/biocontainers/rp2biosensor |
singularity registry hpc automated addition for rp2biosensor |
2to3-3.11, f2py3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, rp2biosensor, tjbench, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/rp2paths |
shpc-registry automated BioContainers addition for rp2paths |
cxpm, sxpm, acyclic, bcomps, ccomps, circo, dijkstra, dot, dot2gxl, dot_builtins |
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GITHUB
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quay.io/biocontainers/rpbasicdesign |
shpc-registry automated BioContainers addition for rpbasicdesign |
depinfo, filetype, httpx, isympy, obfitall, obmm, pint-convert, search_zenodo, search_zenodo.py, slugify, upload_zenodo, upload_zenodo.py, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop |
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GITHUB
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quay.io/biocontainers/rpbp |
singularity registry hpc automated addition for rpbp |
add-mygene-info-to-orfs, bam-to-wiggle, bed12-to-gtf, bedx-to-bedy, cmdstan_model, collect-read-length-orf-profiles, compile-rpbp-models, convert-ccds-to-bed, count-aligned-reads, count-reads, create-base-genome-profile, create-mygene-report, create-orf-profiles, create-read-length-orf-profiles, dash-generate-components, dash-update-components, dask, dna-to-aa, download-srr-files, epylint, estimate-metagene-profile-bayes-factors, estimate-orf-bayes-factors, extract-bed-sequences, extract-cds-coordinates, extract-metagene-profiles, extract-orf-coordinates, extract-orf-profiles, fasta-to-fastq, fastq-pe-dedupe, filter-bam-by-ids, filter-nonunique-peptide-matches, fix-all-bed-files, flexbar, geo2fastq, get-all-orf-peptide-matches, get-all-read-filtering-counts, get-all-utrs, get-orf-peptide-matches, get-read-length-distribution, gtf-to-bed12, install_cmdstan, install_cxx_toolchain, isort, isort-identify-imports, join-long-chromosomes, label-orfs, merge-isoforms, merge-replicate-orf-profiles, parmed, predict-translated-orfs, prepare-rpbp-genome, pyensembl, pylint, pylint-config, pyreverse, remove-duplicate-bed-entries, remove-duplicate-sequences, remove-multimapping-reads, renderer, reorder-fasta, rpbp-predictions-dashboard, rpbp-profile-construction-dashboard, run-all-rpbp-instances, run-bowtie, run-rpbp-pipeline, run-signalp, run-tmhmm, select-final-prediction-set, select-periodic-offsets, split-bed12-blocks, split-long-chromosomes, subtract-bed, summarize-rpbp-predictions, summarize-rpbp-profile-construction, symilar, visualize-metagene-profile-bayes-factor, visualize-orf-type-metagene-profiles, STAR, STARlong, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, dask-scheduler, dask-ssh, dask-worker, fastqc, flask, get_objgraph, undill, bokeh, jpackage |
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GITHUB
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quay.io/biocontainers/rpf-count-cds |
shpc-registry automated BioContainers addition for rpf-count-cds |
RPF_count_CDS.py, RPF_count_CDS_nonStranded.py, htseq-count, htseq-qa, conv-template, from-template, qhelpconverter, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats |
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GITHUB
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quay.io/biocontainers/rpfa |
singularity registry hpc automated addition for rpfa |
black, black-primer, blackd, cameo, grako, httpx, isympy, jupyter-execute, jupyter-dejavu, send2trash, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, cmark, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run, curve_keygen, ipython3, ipython, py.test, pytest, jupyter-trust, jupyter, jupyter-migrate, jupyter-troubleshoot, jsonschema, glpsol, pygmentize |
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GITHUB
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quay.io/biocontainers/rpfbagr |
singularity registry hpc automated addition for rpfbagr |
cameo, depinfo, grako, httpx, isympy, jupyter-execute, jupyter-dejavu, send2trash, pandoc-server, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, cmark, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run, curve_keygen, ipython3, ipython, py.test, pytest, jupyter-trust, jupyter, jupyter-migrate, jupyter-troubleshoot, jsonschema, glpsol |
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GITHUB
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quay.io/biocontainers/rpkmforgenes |
shpc-registry automated BioContainers addition for rpkmforgenes |
rpkmforgenes.py, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/rpsbproc |
singularity registry hpc automated addition for rpsbproc |
rpsbproc |
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GITHUB
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quay.io/biocontainers/rptools |
shpc-registry automated BioContainers addition for rptools |
filetype, httpx, isympy, obfitall, obmm, pint-convert, search_zenodo, search_zenodo.py, slugify, upload_zenodo, upload_zenodo.py, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop |
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GITHUB
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quay.io/biocontainers/rpy2 |
shpc-registry automated BioContainers addition for rpy2 |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, x86_64-conda-linux-gnu-gfortran.bin, pyvenv |
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GITHUB
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quay.io/biocontainers/rrikindp |
singularity registry hpc automated addition for rrikindp |
CopomuS.py, IntaRNA, IntaRNA1, IntaRNA2, IntaRNA3, IntaRNA_CSV_p-value.R, IntaRNA_plotRegions.R, IntaRNAduplex, IntaRNAens, IntaRNAexact, IntaRNAhelix, IntaRNAsTar, IntaRNAseed, RRIkinDP, RNAmultifold, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex, RNAsnoop, RNAfold, Kinfold, RNALfold, RNAaliduplex, RNAalifold, RNAcofold, RNAdistance, RNAduplex, RNAeval |
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GITHUB
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quay.io/biocontainers/rrmscorer |
singularity registry hpc automated addition for rrmscorer |
rrmscorer, mpg123, mpg123-id3dump, mpg123-strip, orc-bugreport, orcc, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, libgcrypt-config, mpicalc, yat2m, tjbench, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, attr, balsam, getfattr, jackd |
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GITHUB
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quay.io/biocontainers/rrparser |
shpc-registry automated BioContainers addition for rrparser |
normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/rsa |
shpc-registry automated BioContainers addition for rsa |
pyrsa-decrypt, pyrsa-decrypt-bigfile, pyrsa-encrypt, pyrsa-encrypt-bigfile, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/rsat-core |
shpc-registry automated BioContainers addition for rsat-core |
Vmatchtrans.pl, bigWigToWig.pl, chain2dim, cleanpp.sh, compare-matrices-quick, count-words, cpp, index_bigwigset.pl, info-gibbs, innochecksum, lz4_decompress, matchcluster, matrix-scan-quick, mkdna6idx, mkvtree, myisam_ftdump, myisamchk, myisamlog, myisampack, mysql, mysql.server, mysql_client_test, mysql_client_test_embedded, mysql_config_editor, mysql_embedded, mysql_install_db, mysql_plugin, mysql_secure_installation, mysql_ssl_rsa_setup, mysql_tzinfo_to_sql, mysql_upgrade, mysqladmin, mysqlbinlog, mysqlcheck, mysqld, mysqld_multi, mysqld_safe, mysqldump, mysqldumpslow, mysqlimport, mysqlpump, mysqlshow, mysqlslap, mysqltest, mysqltest_embedded, mysqlxtest, repfind.pl, replace, resolve_stack_dump, resolveip, retrieve-variation-seq, rsat, upgradeprj.pl, variation-scan, vendian, vmatch, vmatchselect, vmigrate.sh, vseqinfo, vseqselect, vstree2tex, vsubseqselect, wigToBigWig.pl, zlib_decompress, transformseq, weblogo, chrpath, g-ir-doc-tool, gnuplot, l4p-tmpl, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect |
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GITHUB
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quay.io/biocontainers/rscape |
shpc-registry automated BioContainers addition for rscape |
FUNCS.pm, MetamakeDemos.pl, PDBFUNCS.pm, R-scape, R-scape-sim, R-scape-sim-nobps, R-view, SelectSubFamilyFromStockholm.pl, Stockholm.pm, appcov, msafilter, pdb_parse.pl, r2r, r2r_msa_comply.pl, chrpath, gnuplot, FastTree, xkbcli, pg_config, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config |
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GITHUB
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quay.io/biocontainers/rseg |
shpc-registry automated BioContainers addition for rseg |
deadzones, rseg, rseg-diff |
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GITHUB
|
quay.io/biocontainers/rsem |
shpc-registry automated BioContainers addition for rsem |
bigWigSummary, convert-sam-for-rsem, extract-transcript-to-gene-map-from-trinity, rsem-bam2readdepth, rsem-bam2wig, rsem-build-read-index, rsem-calculate-credibility-intervals, rsem-calculate-expression, rsem-control-fdr, rsem-extract-reference-transcripts, rsem-for-ebseq-calculate-clustering-info, rsem-for-ebseq-find-DE, rsem-for-ebseq-generate-ngvector-from-clustering-info, rsem-gen-transcript-plots, rsem-generate-data-matrix, rsem-get-unique, rsem-gff3-to-gtf, rsem-parse-alignments, rsem-plot-model, rsem-plot-transcript-wiggles, rsem-prepare-reference, rsem-preref, rsem-refseq-extract-primary-assembly, rsem-run-ebseq, rsem-run-em, rsem-run-gibbs, rsem-sam-validator, rsem-scan-for-paired-end-reads, rsem-simulate-reads, rsem-synthesis-reference-transcripts, rsem-tbam2gbam, config_data, my_print_defaults, mysql_config, perror, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long |
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GITHUB
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quay.io/biocontainers/rseqc |
shpc-registry automated BioContainers addition for rseqc |
FPKM-UQ.py, FPKM_count.py, RNA_fragment_size.py, RPKM_saturation.py, bam2fq.py, bam2wig.py, bam_stat.py, clipping_profile.py, deletion_profile.py, divide_bam.py, geneBody_coverage.py, geneBody_coverage2.py, infer_experiment.py, inner_distance.py, insertion_profile.py, junction_annotation.py, junction_saturation.py, mismatch_profile.py, normalize_bigwig.py, overlay_bigwig.py, read_GC.py, read_NVC.py, read_distribution.py, read_duplication.py, read_hexamer.py, read_quality.py, split_bam.py, split_paired_bam.py, tin.py, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
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GITHUB
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quay.io/biocontainers/rsidx |
shpc-registry automated BioContainers addition for rsidx |
rsidx, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/rsrq |
singularity registry hpc automated addition for rsrq |
rsrq |
|
GITHUB
|
quay.io/biocontainers/rsv-typer |
singularity registry hpc automated addition for rsv-typer |
align_trim, align_trim_n, artic, artic-tools, artic_fasta_header, artic_get_stats, artic_make_depth_mask, artic_mask, artic_vcf_filter, artic_vcf_merge, demux_fast5, longshot, margin_cons, margin_cons_medaka, medaka, medaka_consensus, medaka_counts, medaka_data_path, medaka_variant, medaka_version_report, mini_align, nanopolish, nanopolish_makerange.py, nanopolish_merge.py, nextclade, rsv-typer, vcfextract, check_compression, compress_fast5, porechop, fast5_subset, multi_to_single_fast5, rich-click, single_to_multi_fast5, whatshap, multiqc, minimap2.py, freeze_graph, tar, cmark, tf_upgrade_v2, muscle, tflite_convert, saved_model_cli, toco, toco_from_protos, igzip, pbunzip2, pbzcat, pbzip2, coloredlogs, tensorboard |
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GITHUB
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quay.io/biocontainers/rtg-tools |
shpc-registry automated BioContainers addition for rtg-tools |
rtg, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/rtk |
shpc-registry automated BioContainers addition for rtk |
rtk |
|
GITHUB
|
quay.io/biocontainers/rtk2 |
singularity registry hpc automated addition for rtk2 |
rtk2 |
|
GITHUB
|
quay.io/biocontainers/ruamel.ordereddict |
shpc-registry automated BioContainers addition for ruamel.ordereddict |
smtpd.pyc, easy_install-2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5 |
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GITHUB
|
quay.io/biocontainers/ruamel.yaml |
shpc-registry automated BioContainers addition for ruamel.yaml |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
|
quay.io/biocontainers/ruby-dna-tools |
shpc-registry automated BioContainers addition for ruby-dna-tools |
bundle, bundler, racc, racc2y, y2racc, gdbm_dump, gdbm_load, gdbmtool, jemalloc-config, jeprof, jemalloc.sh, erb, gem, irb, rake |
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GITHUB
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quay.io/biocontainers/ruby |
shpc-registry automated BioContainers addition for ruby |
|
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GITHUB
|
quay.io/biocontainers/rucs |
shpc-registry automated BioContainers addition for rucs |
install_db.sh, rucs, CA.pm, cacert.pem, index-themes, tabulate, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras, pm-collect |
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GITHUB
|
quay.io/biocontainers/ruffus |
shpc-registry automated BioContainers addition for ruffus |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/rukki |
singularity registry hpc automated addition for rukki |
rukki |
|
GITHUB
|
quay.io/biocontainers/run-dbcan |
shpc-registry automated BioContainers addition for run-dbcan |
CGCFinder.py, FragGeneScan, add_functions_orf.py, bact_group_many_proteins_many_patterns.py, hmmscan-parser.py, list_multidomain_proteins.py, parallel_group_many_proteins_many_patterns_noDNA.py, run_FragGeneScan.pl, run_dbcan.py, train_many_organisms_many_families.py, diamond, perl5.32.0, natsort, prodigal, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask |
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GITHUB
|
quay.io/biocontainers/runjob |
singularity registry hpc automated addition for runjob |
qcs, qs, runbatch, runjob, runsge, runsge0, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/rust-bio-tools |
shpc-registry automated BioContainers addition for rust-bio-tools |
rbt, starcode |
|
GITHUB
|
quay.io/biocontainers/rust-mdbg |
shpc-registry automated BioContainers addition for rust-mdbg |
rust-mdbg, to_basespace |
|
GITHUB
|
quay.io/biocontainers/rust-ncbitaxonomy |
shpc-registry automated BioContainers addition for rust-ncbitaxonomy |
taxonomy_filter_fastq, taxonomy_filter_refseq, taxonomy_util |
|
GITHUB
|
quay.io/biocontainers/rust-overlaps |
shpc-registry automated BioContainers addition for rust-overlaps |
rust-overlaps |
|
GITHUB
|
quay.io/biocontainers/rust |
shpc-registry automated BioContainers addition for rust |
|
|
GITHUB
|
quay.io/biocontainers/rustybam |
shpc-registry automated BioContainers addition for rustybam |
rb, rustybam |
|
GITHUB
|
quay.io/biocontainers/rustynuc |
shpc-registry automated BioContainers addition for rustynuc |
rustynuc |
|
GITHUB
|
quay.io/biocontainers/rustyread |
shpc-registry automated BioContainers addition for rustyread |
rustyread |
|
GITHUB
|
quay.io/biocontainers/rvtests |
shpc-registry automated BioContainers addition for rvtests |
bgen2vcf, bgenFileInfo, combineKinship, kinshipDecompose, plink2vcf, rvtest, vcf2geno, vcf2kinship, vcf2ld_gene, vcf2ld_neighbor, vcf2ld_window, vcf2plink, vcfAnnoSummaryLite, vcfConcordance, vcfExtractSite, vcfIndvSummary, vcfPair, vcfPeek, vcfSummary, vcfSummaryLite, vcfVariantSummaryLite |
|
GITHUB
|
quay.io/biocontainers/rxdock |
shpc-registry automated BioContainers addition for rxdock |
make_grid.csh, obfitall, obmm, rbcalcgrid, rbcavity, rbconvgrid, rbdock, rbhtfinder, rblist, rbmoegrid, rbrms, run_rbdock.pl, run_rbscreen.pl, sdfield, sdfilter, sdmodify, sdreport, sdrmsd, sdsort, sdsplit, sdtether, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop |
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GITHUB
|
quay.io/biocontainers/ryuto |
shpc-registry automated BioContainers addition for ryuto |
ryuto, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/s3gof3r |
shpc-registry automated BioContainers addition for s3gof3r |
gof3r |
|
GITHUB
|
quay.io/biocontainers/sabre |
shpc-registry automated BioContainers addition for sabre |
sabre |
|
GITHUB
|
quay.io/biocontainers/saccharis |
singularity registry hpc automated addition for saccharis |
dotenv, hb-info, hmmscan_parser.py, modeltest-ng, modeltest-ng-mpi, run_dbcan, saccharis, saccharis-gui, saccharis.add_family_category, saccharis.make_family_files, saccharis.prune_seqs, saccharis.rename_user_file, saccharis.screen_cazome, saccharis.show_family_categories, mpg123, mpg123-id3dump, mpg123-strip, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, libgcrypt-config, mpicalc, yat2m, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, attr, balsam, getfattr, lprodump, lrelease-pro, lupdate-pro, meshdebug |
|
GITHUB
|
quay.io/biocontainers/safesim |
singularity registry hpc automated addition for safesim |
fastq-grep, fastq-kmers, fastq-match, fastq-qscale, fastq-qual, fastq-qualadj, fastq-sample, fastq-sort, fastq-uniq, safemix, safemut, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/saffrontree |
shpc-registry automated BioContainers addition for saffrontree |
saffrontree, createfontdatachunk.py, kmc, kmc_dump, kmc_tools, enhancer.py, explode.py, fastaq, gifmaker.py, painter.py, player.py |
|
GITHUB
|
quay.io/biocontainers/sage-proteomics |
singularity registry hpc automated addition for sage-proteomics |
sage |
|
GITHUB
|
quay.io/biocontainers/sailfish |
shpc-registry automated BioContainers addition for sailfish |
sailfish, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/sainsc |
singularity registry hpc automated addition for sainsc |
rav1e, SvtAv1EncApp, dav1d, tiff2fsspec, aomdec, aomenc, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, imageio_download_bin, imageio_remove_bin, skivi |
|
GITHUB
|
quay.io/biocontainers/saintbioutils |
singularity registry hpc automated addition for saintbioutils |
f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tqdm, python3.1 |
|
GITHUB
|
quay.io/biocontainers/sak |
shpc-registry automated BioContainers addition for sak |
sak |
|
GITHUB
|
quay.io/biocontainers/salmid |
shpc-registry automated BioContainers addition for salmid |
SalmID.py, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/salmon |
shpc-registry automated BioContainers addition for salmon |
salmon |
|
GITHUB
|
quay.io/biocontainers/salsa2 |
shpc-registry automated BioContainers addition for salsa2 |
RE_sites.py, break_contigs, break_contigs_start, correct.py, correct_links, fast_scaled_scores.py, get_seq.py, layout_unitigs.py, make_links.py, refactor_breaks.py, run_pipeline.py, stitch.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/salty |
singularity registry hpc automated addition for salty |
f2py3.11, kma, kma_index, kma_shm, kma_update, salty, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/sam-algorithm |
shpc-registry automated BioContainers addition for sam-algorithm |
get_objgraph, undill, numba, pycc, natsort, tqdm, f2py3.8, h5clear, h5format_convert, h5watch |
|
GITHUB
|
quay.io/biocontainers/sam |
shpc-registry automated BioContainers addition for sam |
|
|
GITHUB
|
quay.io/biocontainers/sam2lca |
shpc-registry automated BioContainers addition for sam2lca |
sam2lca, jemalloc-config, jeprof, jemalloc.sh, gflags_completions.sh, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz |
|
GITHUB
|
quay.io/biocontainers/sam2pairwise |
singularity registry hpc automated addition for sam2pairwise |
sam2pairwise |
|
GITHUB
|
quay.io/biocontainers/samap |
shpc-registry automated BioContainers addition for samap |
dunamai, scalar, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, scanpy, docutils, igraph |
|
GITHUB
|
quay.io/biocontainers/sambamba |
shpc-registry automated BioContainers addition for sambamba |
ldc-build-runtime, ldc-profdata, ldc-prune-cache, ldc2, ldmd2, sambamba |
|
GITHUB
|
quay.io/biocontainers/samblaster |
shpc-registry automated BioContainers addition for samblaster |
samblaster |
|
GITHUB
|
quay.io/biocontainers/samclip |
shpc-registry automated BioContainers addition for samclip |
samclip, perl5.32.0, streamzip |
|
GITHUB
|
quay.io/biocontainers/samcut |
singularity registry hpc automated addition for samcut |
samcut |
|
GITHUB
|
quay.io/biocontainers/samestr |
singularity registry hpc automated addition for samestr |
dump_file.py, filter_sam.py, kp2np.py, kpileup.py, samestr, muscle, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns, mafft-fftnsi, mafft-ginsi, mafft-homologs.rb, mafft-linsi, mafft-nwns, mafft-nwnsi, mafft-profile, mafft-qinsi, mafft-xinsi, nwns, nwnsi, mafft, edirect.py, filter-columns, fuse-segments |
|
GITHUB
|
quay.io/biocontainers/samhaplotag |
shpc-registry automated BioContainers addition for samhaplotag |
10xSpoof, 16BaseBCGen, SamHaplotag |
|
GITHUB
|
quay.io/biocontainers/sampei |
shpc-registry automated BioContainers addition for sampei |
sampei, numba, pycc, xslt-config, xsltproc, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/sample-sheet |
shpc-registry automated BioContainers addition for sample-sheet |
sample-sheet, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier |
|
GITHUB
|
quay.io/biocontainers/samplot |
shpc-registry automated BioContainers addition for samplot |
samplot, idn2, wget, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9 |
|
GITHUB
|
quay.io/biocontainers/samrefiner |
shpc-registry automated BioContainers addition for samrefiner |
SAM_Refiner, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/samshee |
singularity registry hpc automated addition for samshee |
idle3.13, pydoc3.13, python3.13, python3.13-config, jsonschema, normalizer |
|
GITHUB
|
quay.io/biocontainers/samsift |
shpc-registry automated BioContainers addition for samsift |
samsift, samsift-norm-sam, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, 2to3-3.6, idle3.6, pydoc3.6 |
|
GITHUB
|
quay.io/biocontainers/samsifter |
shpc-registry automated BioContainers addition for samsifter |
|
|
GITHUB
|
quay.io/biocontainers/samstats |
shpc-registry automated BioContainers addition for samstats |
SAMstats, SAMstatsParallel, get_objgraph, undill, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7 |
|
GITHUB
|
quay.io/biocontainers/samsum |
shpc-registry automated BioContainers addition for samsum |
pyfastx, samsum, py.test, pytest, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config |
|
GITHUB
|
quay.io/biocontainers/samtools |
shpc-registry automated BioContainers addition for samtools |
ace2sam, bgzip, blast2sam.pl, bowtie2sam.pl, export2sam.pl, fasta-sanitize.pl, htsfile, interpolate_sam.pl, libdeflate-gunzip, libdeflate-gzip, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, novo2sam.pl, plot-ampliconstats, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools, samtools.pl, seq_cache_populate.pl, soap2sam.pl, tabix, wgsim, wgsim_eval.pl, zoom2sam.pl |
|
GITHUB
|
quay.io/biocontainers/samwell |
shpc-registry automated BioContainers addition for samwell |
docutils, cygdb, cython, cythonize, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py |
|
GITHUB
|
quay.io/biocontainers/sanitizeme |
shpc-registry automated BioContainers addition for sanitizeme |
SanitizeMePaired_CLI.py, SanitizeMePaired_GUI.py, SanitizeMe_CLI.py, SanitizeMe_GUI.py, helpviewer, img2png, img2py, img2xpm, pycrust, pyshell, pyslices, pyslicesshell, pywxrc, wx-config, wxdemo, wxdocs, wxget, wxrc, wxrc-3.1, egrep, fgrep, grep, gawk-5.1.0, awk, gawk, sdust, paftools.js, minimap2, k8 |
|
GITHUB
|
quay.io/biocontainers/sankoff |
singularity registry hpc automated addition for sankoff |
sankoff, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/sanntis |
singularity registry hpc automated addition for sanntis |
import_pb_to_tensorboard, sanntis, sanntis_build_gb, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, jpackage, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, cups-config, ippeveprinter, ipptool, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify |
|
GITHUB
|
quay.io/biocontainers/sansa |
shpc-registry automated BioContainers addition for sansa |
sansa, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/sap |
shpc-registry automated BioContainers addition for sap |
sap |
|
GITHUB
|
quay.io/biocontainers/sarscov2formatter |
shpc-registry automated BioContainers addition for sarscov2formatter |
sarscov2formatter, f2py3.10, chardetect, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/sarscov2summary |
shpc-registry automated BioContainers addition for sarscov2summary |
sarscov2summary, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/sashimi-py |
singularity registry hpc automated addition for sashimi-py |
dask, filetype, sashimipy, aec, cooler, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix, pairs_merger, process_merged_nodup.sh, process_old_merged_nodup.sh, streamer_1d, dask-scheduler, dask-ssh, dask-worker, get_objgraph, undill, bokeh, vcf_sample_filter.py, pt2to3, ptdump, ptrepack |
|
GITHUB
|
quay.io/biocontainers/saspector |
shpc-registry automated BioContainers addition for saspector |
SASpector, coverage.py, gene_predict.py, icarus.py, kmer.py, mapper.py, metaquast, metaquast.py, progressiveMauve, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, quastunmap.py, select_mash.py, sourmash, summary.py, tandem_repeats.py, tbl2asn-test, fix-sqn-date, circos, circos.exe, compile.bat, compile.make, faketime, gddiag, glimmerhmm, glimmhmm.pl, list.modules |
|
GITHUB
|
quay.io/biocontainers/sat-bsa |
shpc-registry automated BioContainers addition for sat-bsa |
1_1_select_reads_name_from_bam.pl, 1_2_pick_up_reads.pl, 1_3_fa_size.pl, 3_1_filter_mapQ_for_sam.pl, 4_1_fa_size.pl, 4_1_promoter_transcription_region.pl, 4_2_select_pileup.pl, 4_3_mut_count_pileup.pl, 4_4_Fisher.R, 4_5_select_mut_pileup.pl, 4_6_match_pileup.pl, 4_7_result.pl, 5_1_make_script.pl, 5_2_make_format.pl, 5_make_graph.R, Sat-BSA, make_Local_de_novo_assembly.pl, make_Local_reads_selection.pl, make_Long_reads_alignment.pl, make_SVs_detection.pl, perl5.32.0, sdust, paftools.js, minimap2, k8, jfr, jaotc, aserver, jdeprscan, jhsdb |
|
GITHUB
|
quay.io/biocontainers/sativa |
singularity registry hpc automated addition for sativa |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/satrap |
shpc-registry automated BioContainers addition for satrap |
2csfastq_1csfastq, cs2bs_assembly, csfasta_to_fastq, fasta_remove, pass, rename_fastq_tag, satrap, cd-hit-est |
|
GITHUB
|
quay.io/biocontainers/savage |
shpc-registry automated BioContainers addition for savage |
kallisto, rust-overlaps, savage, mirror_server, mirror_server_stop, qualfa2fq.pl, xa2multi.pl, bwa, python2-config, python2.7-config, python2, python2.7, idle |
|
GITHUB
|
quay.io/biocontainers/savana |
singularity registry hpc automated addition for savana |
savana, savana-validation, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap, groupBy, intersectBed, linksBed, mapBed, maskFastaFromBed, mergeBed, multiBamCov |
|
GITHUB
|
quay.io/biocontainers/savvy |
shpc-registry automated BioContainers addition for savvy |
sav |
|
GITHUB
|
quay.io/biocontainers/sawfish |
singularity registry hpc automated addition for sawfish |
sawfish |
|
GITHUB
|
quay.io/biocontainers/sbg-cwl-runner |
shpc-registry automated BioContainers addition for sbg-cwl-runner |
sbg-cwl-runner, chardetect, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/sbml2sbol |
shpc-registry automated BioContainers addition for sbml2sbol |
normalizer, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7 |
|
GITHUB
|
quay.io/biocontainers/sbol-utilities |
singularity registry hpc automated addition for sbol-utilities |
corepack, excel-to-sbol, fasta2sbol, genbank2sbol, graph-sbol, node, npm, npx, owlrl, pyshacl, sbol-calculate-sequences, sbol-converter, sbol-diff, sbol-expand-derivations, sbol2fasta, sbol2genbank, sbol2to3, sbol3to2, xml2-config.bak, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, cups-config, ippeveprinter, ipptool, diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts, transform, rsvg-convert, gtk-builder-convert, gtk-demo, gtk-query-immodules-2.0, gtk-update-icon-cache |
|
GITHUB
|
quay.io/biocontainers/sbpipe |
shpc-registry automated BioContainers addition for sbpipe |
sbpipe, sbpipe_move_datasets, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/sbt |
shpc-registry automated BioContainers addition for sbt |
sbt, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/sc3-scripts |
shpc-registry automated BioContainers addition for sc3-scripts |
bioconductor-sc3-scripts-post-install-tests.bats, bioconductor-sc3-scripts-post-install-tests.sh, bioconductor-scater-scripts-post-install-tests.bats, bioconductor-scater-scripts-post-install-tests.sh, bioconductor-singlecellexperiment-scripts-post-install-tests.sh, sc3-sc3-calc-biology.R, sc3-sc3-calc-consens.R, sc3-sc3-calc-dists.R, sc3-sc3-calc-transfs.R, sc3-sc3-estimate-k.R, sc3-sc3-kmeans.R, sc3-sc3-prepare.R, sc3-sc3-validate.R, sc3-sc3.R, scater-calculate-cpm.R, scater-calculate-qc-metrics.R, scater-extract-qc-metric.R, scater-filter.R, scater-is-outlier.R, scater-normalize.R, scater-plot-reduced-dim.R, scater-run-pca.R, scater-run-tsne.R, singlecellexperiment-create-single-cell-experiment.R, singlecellexperiment-get-random-cells.R, singlecellexperiment-get-random-genes.R, idn2, conda_build.sh, wget, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/scaden |
shpc-registry automated BioContainers addition for scaden |
dunamai, scaden, scanpy, estimator_ckpt_converter, google-oauthlib-tool, cmark, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, tf_upgrade_v2 |
|
GITHUB
|
quay.io/biocontainers/scaffold_builder |
shpc-registry automated BioContainers addition for scaffold_builder |
scaffold_builder.py, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot |
|
GITHUB
|
quay.io/biocontainers/scala |
shpc-registry automated BioContainers addition for scala |
fsc, fsc.bat, scala, scala.bat, scalac, scalac.bat, scaladoc, scaladoc.bat, scalap, scalap.bat, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/scallop-lr |
shpc-registry automated BioContainers addition for scallop-lr |
scallop-lr, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/scallop-umi |
shpc-registry automated BioContainers addition for scallop-umi |
scallop-umi, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/scallop |
shpc-registry automated BioContainers addition for scallop |
|
|
GITHUB
|
quay.io/biocontainers/scallop2 |
shpc-registry automated BioContainers addition for scallop2 |
scallop2, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/scalop |
shpc-registry automated BioContainers addition for scalop |
SCALOP, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat |
|
GITHUB
|
quay.io/biocontainers/scalpel |
shpc-registry automated BioContainers addition for scalpel |
scalpel-discovery, scalpel-export, gff2gff.py, bamtools, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, fasta-sanitize.pl |
|
GITHUB
|
quay.io/biocontainers/scanindel |
shpc-registry automated BioContainers addition for scanindel |
ScanIndel.py, inchworm, vcf-combine.py, blat, coverage_to_regions.py, fasta_generate_regions.py, freebayes-parallel, generate_freebayes_region_scripts.sh, freebayes, vcf_filter.py, vcf_melt, bwa, bcftools |
|
GITHUB
|
quay.io/biocontainers/scanorama |
shpc-registry automated BioContainers addition for scanorama |
f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, jpgicc |
|
GITHUB
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quay.io/biocontainers/scanpy-scripts |
shpc-registry automated BioContainers addition for scanpy-scripts |
dunamai, loompy, scanpy-cli, scanpy-filter-cells, scanpy-filter-genes, scanpy-find-cluster, scanpy-find-markers, scanpy-find-variable-genes, scanpy-integrate, scanpy-multiplet, scanpy-neighbors, scanpy-normalise-data, scanpy-read-10x, scanpy-regress, scanpy-run-pca, scanpy-run-tsne, scanpy-run-umap, scanpy-scale-data, scanpy-scripts-tests.bats, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng |
|
GITHUB
|
quay.io/biocontainers/scanpy |
shpc-registry automated BioContainers addition for scanpy |
|
|
GITHUB
|
quay.io/biocontainers/scapp |
shpc-registry automated BioContainers addition for scapp |
classify_fasta.py, scapp, train.py, CA.pm, cacert.pem, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras, pm-collect, readme.pdf |
|
GITHUB
|
quay.io/biocontainers/scar |
shpc-registry automated BioContainers addition for scar |
scar, torchrun, scanpy, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, docutils, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin |
|
GITHUB
|
quay.io/biocontainers/scarches |
singularity registry hpc automated addition for scarches |
fabric, gdown, lightning, rav1e, torch_shm_manager, SvtAv1EncApp, dav1d, aomdec, aomenc, protoc-25.3.0, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, torchrun, isympy, h5tools_test_utils, convert-caffe2-to-onnx, convert-onnx-to-caffe2, igraph, scanpy, markdown-it, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc |
|
GITHUB
|
quay.io/biocontainers/scater-scripts |
shpc-registry automated BioContainers addition for scater-scripts |
bioconductor-scater-scripts-post-install-tests.bats, bioconductor-scater-scripts-post-install-tests.sh, bioconductor-singlecellexperiment-scripts-post-install-tests.sh, scater-calculate-cpm.R, scater-calculate-qc-metrics.R, scater-extract-qc-metric.R, scater-filter.R, scater-is-outlier.R, scater-normalize.R, scater-plot-reduced-dim.R, scater-run-pca.R, scater-run-tsne.R, singlecellexperiment-create-single-cell-experiment.R, singlecellexperiment-get-random-cells.R, singlecellexperiment-get-random-genes.R, build_env_setup.sh, conda_build.sh, gio-launch-desktop, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/sccaf |
shpc-registry automated BioContainers addition for sccaf |
sccaf, sccaf-assess, sccaf-assess-merger, sccaf-regress-out, scanpy, igraph, compile-et.pl, prerr.properties, pt2to3, ptdump, ptrepack, pttree, numba, pycc |
|
GITHUB
|
quay.io/biocontainers/sccaller |
shpc-registry automated BioContainers addition for sccaller |
sccaller, f2py2, f2py2.7, fasta-sanitize.pl, plot-ampliconstats, python2-config, python2.7-config, python2, python2.7, idle, python-config |
|
GITHUB
|
quay.io/biocontainers/sccmec |
singularity registry hpc automated addition for sccmec |
archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, camlhmp, camlhmp-blast, camlhmp-extract, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gbf2fsa, gbf2ref, gm2ranges, gm2segs, ini2xml, jsonl2xml, just-first-key, nhance.sh, pma2apa, pma2pme, pmc2bioc, pmc2info, quote-grouped-elements, ref2pmid, refseq-nm-cds, sccmec, scn2xml, stream-local, test-pmc-index, toml2xml, yaml2xml, executor, rich-click, blastn_vdb, tblastn_vdb, markdown-it, coloredlogs, test_pcre, humanfriendly, pigz, unpigz, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software |
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GITHUB
|
quay.io/biocontainers/scelestial |
singularity registry hpc automated addition for scelestial |
scelestial, scelestial-synthesis, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/scelvis |
shpc-registry automated BioContainers addition for scelvis |
dash-generate-components, dash-update-components, rehttpfs, renderer, scelvis, scanpy, docutils, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, flask, pybabel, jp.py, numba |
|
GITHUB
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quay.io/biocontainers/scepia |
shpc-registry automated BioContainers addition for scepia |
GenomeOntology.pl, HomerConfig.pm, HomerSVGLogo.pm, ProSampler, SIMA.pl, Statistics.pm, XXmotif, addData.pl, addDataHeader.pl, addGeneAnnotation.pl, addInternalData.pl, addOligos.pl, adjustPeakFile.pl, adjustRedunGroupFile.pl, analyzeChIP-Seq.pl, analyzeHiC, analyzeRNA.pl, analyzeRepeats.pl, annotateInteractions.pl, annotatePeaks.pl, annotateRelativePosition.pl, annotateTranscripts.pl, assignGeneWeights.pl, assignGenomeAnnotation, assignTSStoGene.pl, batchAnnotatePeaksHistogram.pl, batchFindMotifs.pl, batchFindMotifsGenome.pl, batchMakeHiCMatrix.pl, batchMakeMultiWigHub.pl, batchMakeTagDirectory.pl, batchParallel.pl, bed2DtoUCSCbed.pl, bed2pos.pl, bed2tag.pl, bedToGenePred, bigBedToBed, blat2gtf.pl, bridgeResult2Cytoscape.pl, changeNewLine.pl, checkPeakFile.pl, checkTagBias.pl, chopUpBackground.pl, chopUpPeakFile.pl, chopify.pl, cleanUpPeakFile.pl, cleanUpSequences.pl, cluster2bed.pl, cluster2bedgraph.pl, combineGO.pl, combineHubs.pl, combine_peaks, compareMotifs.pl, condenseBedGraph.pl, cons2fasta.pl, conservationAverage.pl, conservationPerLocus.pl, convertCoordinates.pl, convertIDs.pl, convertOrganismID.pl, coverage_table, createIGVhtml.pl, dinamo, dtc, duplicateCol.pl, eland2tags.pl, enr, fasta-from-bed, fasta-re-match, fasta2tab.pl, fastq2fasta.pl, filterListBy.pl, filterTADsAndCPs.pl, filterTADsAndLoops.pl, filterTagDirectory.pl, findGO.pl, findGOtxt.pl, findHiCCompartments.pl, findHiCDomains.pl, findHiCInteractionsByChr.pl, findKnownMotifs.pl, findMotifs.pl, findMotifsGenome.pl, findPeaks, findRedundantBLAT.pl, findTADsAndLoops.pl, findTADsAndLoopsFromRelMatrix, findTopMotifs.pl, findcsRNATSS.pl, flipPC1toMatch.pl, fluff, freq2group.pl, gadem, genePredToBed, genePredToGtf, genericConvertIDs.pl, genomeOntology, genomepy, getChrLengths.pl, getConservedRegions.pl, getDiffExpression.pl, getDifferentialBedGraph.pl, getDifferentialPeaks, getDifferentialPeaksReplicates.pl, getDistalPeaks.pl, getFocalPeaks.pl, getGWASoverlap.pl, getGenesInCategory.pl, getGenomeTilingPeaks, getHiCcorrDiff.pl, getHomerQCstats.pl, getLikelyAdapters.pl, getMappableRegions, getMappingStats.pl, getPartOfPromoter.pl, getPeakTags, getPos.pl, getRandomReads.pl, getSiteConservation.pl, getTopPeaks.pl, gff2pos.pl, gff3ToGenePred, gimme, go2cytoscape.pl, groupSequences.pl, gtfToGenePred, homer, homer2, homerTools, htseq-count-barcodes, index-fasta-file, joinFiles.pl, loadGenome.pl, loadPromoters.pl, makeBigBedMotifTrack.pl, makeBigWig.pl, makeBinaryFile.pl, makeHiCWashUfile.pl, makeMetaGeneProfile.pl, makeMultiWigHub.pl, makeTagDirectory, makeUCSCfile, map-fastq.pl, meme-chip_html_to_tsv, merge2Dbed.pl, mergeData.pl, mergePeaks, momo, motif2Jaspar.pl, motif2Logo.pl, parseGTF.pl, pos2bed.pl, prepForR.pl, preparseGenome.pl, profile2seq.pl, qnorm, qseq2fastq.pl, randRemoveBackground.pl, randomizeGroupFile.pl, randomizeMotifs.pl, removeAccVersion.pl, removeBadSeq.pl, removeOutOfBoundsReads.pl, removePoorSeq.pl, removeRedundantPeaks.pl, renamePeaks.pl, resizePosFile.pl, revoppMotif.pl, rotateHiCmatrix.pl, runHiCpca.pl, sam2spliceJunc.pl, scanMotifGenomeWide.pl, scepia, scrambleFasta.pl, selectRepeatBg.pl, seq2profile.pl, streme, streme_xml_to_html, subtractBedGraphs.pl, subtractBedGraphsDirectory.pl, tab2fasta.pl, tag2bed.pl, tag2pos.pl, tagDir2HiCsummary.pl, tagDir2bed.pl, tagDir2hicFile.pl, tgene, trawler, weeder2, zipHomerResults.pl, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip |
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GITHUB
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quay.io/biocontainers/scexecute |
singularity registry hpc automated addition for scexecute |
helpviewer, img2png, img2py, img2xpm, minDepth, pycrust, pyshell, pyslices, pyslicesshell, pywxrc, scBAMStats, scExecute, wx-config, wxdemo, wxdocs, wxget, wxrc, wxrc-3.2, gtk-builder-convert, gtk-demo, gtk-query-immodules-2.0, gtk-update-icon-cache, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, normalizer, gst-device-monitor-1.0, gst-discoverer-1.0, gst-play-1.0, fasta-sanitize.pl, plot-ampliconstats, gst-inspect-1.0, gst-launch-1.0, gst-stats-1.0, gst-typefind-1.0, f2py3.10, aserver, opj_compress, opj_decompress, opj_dump, ace2sam, blast2sam.pl |
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GITHUB
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quay.io/biocontainers/scg |
shpc-registry automated BioContainers addition for scg |
scg, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/scglue |
singularity registry hpc automated addition for scglue |
torchrun, scanpy, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, igraph, docutils, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, get_objgraph, pybabel, undill, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis, ndmetis, numba, pycc, natsort, rst2html4.py, rst2html5.py, protoc |
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GITHUB
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quay.io/biocontainers/schavott |
shpc-registry automated BioContainers addition for schavott |
pyfasta, schavott, watchmedo, bokeh, f2py3.8, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy |
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GITHUB
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quay.io/biocontainers/schema-salad |
shpc-registry automated BioContainers addition for schema-salad |
schema-salad-doc, schema-salad-tool, avro, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, doesitcache, futurize, pasteurize, chardetect |
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GITHUB
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quay.io/biocontainers/schema |
shpc-registry automated BioContainers addition for schema |
|
|
GITHUB
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quay.io/biocontainers/schpl |
singularity registry hpc automated addition for schpl |
qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, h5tools_test_utils, h5fuse.sh, h5delete, natsort, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, tjbench, brotli, h5clear, h5format_convert, h5watch, h5fc |
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GITHUB
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quay.io/biocontainers/scib |
singularity registry hpc automated addition for scib |
h5tools_test_utils, h5fuse.sh, pcre2posix_test, igraph, scanpy, hwloc-gather-cpuid, h5delete, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, numba, natsort, diffimg, delaunay, gts-config, gts2dxf |
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GITHUB
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quay.io/biocontainers/scikit-bio |
shpc-registry automated BioContainers addition for scikit-bio |
nosetests-3.5, doesitcache, nosetests, ipython3, ipython, easy_install-3.5, natsort, 2to3-3.5, idle3.5, pydoc3.5, python3.5 |
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GITHUB
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quay.io/biocontainers/scikit-image |
shpc-registry automated BioContainers addition for scikit-image |
imageio_download_bin, imageio_remove_bin, skivi, qhelpconverter, pylupdate5, pyrcc5, pyuic5, sip, qdoc, gst-device-monitor-1.0 |
|
GITHUB
|
quay.io/biocontainers/scikit-learn |
shpc-registry automated BioContainers addition for scikit-learn |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
|
quay.io/biocontainers/scikits-datasmooth |
shpc-registry automated BioContainers addition for scikits-datasmooth |
dsdp5, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis, ndmetis, glpsol, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom |
|
GITHUB
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quay.io/biocontainers/sciphi |
shpc-registry automated BioContainers addition for sciphi |
sciphi |
|
GITHUB
|
quay.io/biocontainers/sciphin |
singularity registry hpc automated addition for sciphin |
sciphin |
|
GITHUB
|
quay.io/biocontainers/scipy |
shpc-registry automated BioContainers addition for scipy |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
|
quay.io/biocontainers/scirpy |
shpc-registry automated BioContainers addition for scirpy |
airr-tools, dunamai, scanpy, igraph, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, cmpfillin, gpmetis, graphchk |
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GITHUB
|
quay.io/biocontainers/scitrack |
singularity registry hpc automated addition for scitrack |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/scmap-cli |
shpc-registry automated BioContainers addition for scmap-cli |
scmap-cli-post-install-tests.bats, scmap-cli-post-install-tests.sh, scmap-index-cell.R, scmap-index-cluster.R, scmap-make-test-data.R, scmap-preprocess-sce.R, scmap-scmap-cell.R, scmap-scmap-cluster.R, scmap-select-features.R, scmap_get_std_output.R, build_env_setup.sh, conda_build.sh, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, gio-launch-desktop, c89, c99 |
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GITHUB
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quay.io/biocontainers/scmidas |
singularity registry hpc automated addition for scmidas |
jlpm, jupyter-events, jupyter-lab, jupyter-labextension, jupyter-labhub, jupyter-server, pandoc-lua, pyjson5, qconvex, qdelaunay, qhalf, qhull, qtpy, qvoronoi, rbox, torch_shm_manager, jsonpointer, dunamai, jupyter-console, protoc-25.3.0, scalar, wsdump, jupyter-qtconsole, numpy-config, httpx, jupyter-execute, send2trash, jupyter-dejavu, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, torchrun, isympy, h5tools_test_utils, pandoc-server, jupyter-notebook, igraph |
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GITHUB
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quay.io/biocontainers/scnic |
shpc-registry automated BioContainers addition for scnic |
SCNIC_analysis.py, fastspar, fastspar_bootstrap, fastspar_pvalues, fastspar_reduce, module_enrichment.py, biom, doesitcache, iptest3, iptest, ipython3, ipython, cygdb, cython, cythonize, py.test |
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GITHUB
|
quay.io/biocontainers/scoary |
shpc-registry automated BioContainers addition for scoary |
pylupdate4, pyrcc4, pyuic4, qdoc3, qmlviewer, qt3to4, qtconfig, qttracereplay, scoary, scoary_GUI, ete3, easy_install-3.6, qhelpconverter, sip, xslt-config, xsltproc, qdbus, qdbuscpp2xml, qdbusviewer, qdbusxml2cpp |
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GITHUB
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quay.io/biocontainers/scoop |
shpc-registry automated BioContainers addition for scoop |
curve_keygen, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/scoring-matrices |
singularity registry hpc automated addition for scoring-matrices |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/scorpio |
shpc-registry automated BioContainers addition for scorpio |
constellations, extract_definitions.py, scorpio, type_constellations.py, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
|
quay.io/biocontainers/scpred-cli |
shpc-registry automated BioContainers addition for scpred-cli |
get_test_data.R, scpred_get_feature_space.R, scpred_get_std_output.R, scpred_post_install_tests.bats, scpred_post_install_tests.sh, scpred_predict.R, scpred_train_model.R, build_env_setup.sh, conda_build.sh, pandoc, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
|
quay.io/biocontainers/scprep |
shpc-registry automated BioContainers addition for scprep |
f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/scramble |
shpc-registry automated BioContainers addition for scramble |
cluster_identifier, scramble.sh, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides |
|
GITHUB
|
quay.io/biocontainers/scran-cli |
shpc-registry automated BioContainers addition for scran-cli |
dropletutils-barcoderanks.R, dropletutils-downsample-matrix.R, dropletutils-empty-drops.R, dropletutils-make-test-sdrf.R, dropletutils-read-10x-counts.R, dropletutils-scripts-post-install-tests.bats, dropletutils-scripts-post-install-tests.sh, igraph_extract_clusters.R, old-scran-cli-filter-sce.R, scran-build-snn-graph.R, scran-cli-filter-sce.R, scran-compute-spike-factors.R, scran-compute-sum-factors.R, scran-convert-to.R, scran-correlate-genes.R, scran-correlate-pairs.R, scran-denoise-pca.R, scran-find-markers.R, scran-get-clustered-pcs.R, scran-model-gene-var-with-spikes.R, scran-model-gene-var.R, scran-trend-var.R, scran_post_install_tests.bats, scran_post_install_tests.sh, build_env_setup.sh, conda_build.sh, x86_64-conda-linux-gnu-gfortran.bin |
|
GITHUB
|
quay.io/biocontainers/scrappie |
shpc-registry automated BioContainers addition for scrappie |
scrappie, scrappy, mirror_server, mirror_server_stop, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config |
|
GITHUB
|
quay.io/biocontainers/screadcounts |
singularity registry hpc automated addition for screadcounts |
helpviewer, img2png, img2py, img2xpm, pycrust, pyshell, pyslices, pyslicesshell, pywxrc, readCounts, readCountsMatrix, scReadCounts, scVarLoci, varLoci, wx-config, wxdemo, wxdocs, wxget, wxrc, wxrc-3.2, gtk-builder-convert, gtk-demo, gtk-query-immodules-2.0, gtk-update-icon-cache, gdk-pixbuf-thumbnailer, gdk-pixbuf-csource, gdk-pixbuf-pixdata, gdk-pixbuf-query-loaders, normalizer, gst-device-monitor-1.0, gst-discoverer-1.0, gst-play-1.0, fasta-sanitize.pl, plot-ampliconstats, gst-inspect-1.0, gst-launch-1.0, gst-stats-1.0, gst-typefind-1.0, f2py3.10, aserver, opj_compress, opj_decompress, opj_dump, ace2sam, blast2sam.pl |
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GITHUB
|
quay.io/biocontainers/screamingbackpack |
shpc-registry automated BioContainers addition for screamingbackpack |
screamingBackpack, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/screed |
shpc-registry automated BioContainers addition for screed |
screed, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/scrm |
shpc-registry automated BioContainers addition for scrm |
scrm |
|
GITHUB
|
quay.io/biocontainers/scrnasim-toolz |
singularity registry hpc automated addition for scrnasim-toolz |
cdna-generator, cmtime, fragment-selector, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, mckey, priming-site-predictor, protoc-24.3.0, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, read-sequencer, riostream, rping, rstream, sequence-extractor, structure-generator, transcript-sampler, ucmatose, udaddy, udpong, io_demo, ucx_info, ucx_perftest, ucx_read_profile, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, orc-contents, orc-metadata, orc-statistics, sha256_profile, gflags_completions.sh, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin |
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GITHUB
|
quay.io/biocontainers/scrubby |
singularity registry hpc automated addition for scrubby |
bsmp2info, fsa2xml, gbf2info, just-top-hits, scrubby, strobealign, systematic-mutations, kraken2, kraken2-build, kraken2-inspect, rsync-ssl, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gbf2fsa, gbf2ref |
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GITHUB
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quay.io/biocontainers/scrublet |
shpc-registry automated BioContainers addition for scrublet |
tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng |
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GITHUB
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quay.io/biocontainers/scspectra |
singularity registry hpc automated addition for scspectra |
qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, torchrun, h5tools_test_utils, convert-caffe2-to-onnx, convert-onnx-to-caffe2, scanpy, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo |
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GITHUB
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quay.io/biocontainers/scsplit |
singularity registry hpc automated addition for scsplit |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/scssim |
shpc-registry automated BioContainers addition for scssim |
scssim |
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GITHUB
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quay.io/biocontainers/sctagger |
singularity registry hpc automated addition for sctagger |
scTagger.py, fonttools, pyftmerge, pyftsubset, ttx, tqdm, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/scte |
singularity registry hpc automated addition for scte |
scTE, scTEATAC, scTEATAC_build, scTE_build, natsort, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp, h5perf_serial |
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GITHUB
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quay.io/biocontainers/sctools |
shpc-registry automated BioContainers addition for sctools |
sctools_demultiplex |
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GITHUB
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quay.io/biocontainers/sctriangulate |
singularity registry hpc automated addition for sctriangulate |
SvtAv1DecApp, SvtAv1EncApp, bioservices, genl-ctrl-list, gseapy, h5tools_test_utils, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave, nl-link-ifindex2name, nl-link-list, nl-link-name2ifindex, nl-link-release, nl-link-set, nl-link-stats, nl-list-caches, nl-list-sockets, nl-monitor, nl-neigh-add, nl-neigh-delete, nl-neigh-list, nl-neightbl-list, nl-nh-list, nl-pktloc-lookup, nl-qdisc-add, nl-qdisc-delete, nl-qdisc-list, nl-route-add, nl-route-delete, nl-route-get, nl-route-list, nl-rule-list, nl-tctree-list, nl-util-addr, protoc-25.1.0, rav1e, dav1d, cmtime, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, mckey, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, ucmatose, udaddy, udpong, dask, tiff2fsspec |
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GITHUB
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quay.io/biocontainers/scvelo |
shpc-registry automated BioContainers addition for scvelo |
dunamai, loompy, scanpy, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, pt2to3, ptdump, ptrepack, pttree |
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GITHUB
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quay.io/biocontainers/scvi-tools |
shpc-registry automated BioContainers addition for scvi-tools |
hyperopt-mongo-worker, keyring, pkginfo, poetry, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, google-oauthlib-tool, cmark, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, jupyter-nbconvert |
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GITHUB
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quay.io/biocontainers/scvi |
shpc-registry automated BioContainers addition for scvi |
|
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GITHUB
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quay.io/biocontainers/scvis |
shpc-registry automated BioContainers addition for scvis |
scvis, pbr, g-ir-doc-tool, theano-cache, theano-nose, freeze_graph, mako-render, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect |
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GITHUB
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quay.io/biocontainers/scxa-plots |
shpc-registry automated BioContainers addition for scxa-plots |
dropletBarcodePlot.R, x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/sdeper |
singularity registry hpc automated addition for sdeper |
runDeconvolution, runImputation, h5delete, import_pb_to_tensorboard, scanpy, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, estimator_ckpt_converter, google-oauthlib-tool, aec, tf_upgrade_v2, tflite_convert, saved_model_cli, toco, toco_from_protos |
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GITHUB
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quay.io/biocontainers/sdm |
shpc-registry automated BioContainers addition for sdm |
sdm |
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GITHUB
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quay.io/biocontainers/sdrf-pipelines |
shpc-registry automated BioContainers addition for sdrf-pipelines |
|
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GITHUB
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quay.io/biocontainers/sdust |
singularity registry hpc automated addition for sdust |
sdust |
|
GITHUB
|
quay.io/biocontainers/seaborn |
shpc-registry automated BioContainers addition for seaborn |
compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, f2py3.6, certutil, nspr-config, nss-config, pk12util |
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GITHUB
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quay.io/biocontainers/seacells |
singularity registry hpc automated addition for seacells |
progressbar, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, protoc-25.3.0, h5tools_test_utils, igraph, scanpy, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics |
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GITHUB
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quay.io/biocontainers/seacr |
shpc-registry automated BioContainers addition for seacr |
SEACR_1.3.R, SEACR_1.3.sh, x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/search_ncbi |
singularity registry hpc automated addition for search_ncbi |
searchncbi, numpy-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tqdm, normalizer |
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GITHUB
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quay.io/biocontainers/searchgui |
shpc-registry automated BioContainers addition for searchgui |
csc, csc-dim, csi, illinkanalyzer, monograph, nunit-console, nunit-console2, nunit-console4, searchgui, vbc, mono-package-runtime, sgen-grep-binprot, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr |
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GITHUB
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quay.io/biocontainers/secapr |
shpc-registry automated BioContainers addition for secapr |
abyss-rresolver-short, abyss-stack-size, io_demo, scriptlive, secapr, ucx_info, ucx_perftest, ucx_read_profile, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject |
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GITHUB
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quay.io/biocontainers/secedo |
singularity registry hpc automated addition for secedo |
pileup, secedo |
|
GITHUB
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quay.io/biocontainers/secimtools |
shpc-registry automated BioContainers addition for secimtools |
add_group_rank.py, anova_fixed.py, bland_altman_plot.py, blank_feature_filtering_flags.py, coefficient_variation_flags.py, compare_flags.py, compound_identification.py, data_normalization_and_rescaling.py, distribution_features.py, distribution_samples.py, hierarchical_clustering_heatmap.py, imputation.py, kruskal_wallis.py, lasso_enet_var_select.py, linear_discriminant_analysis.py, log_and_glog_transformation.py, magnitude_difference_flags.py, mahalanobis_distance.py, merge_flags.py, meta_analysis.py, modify_design_file.py, modulated_modularity_clustering.py, multiple_testing_adjustment.py, mzrt_match.py, partial_least_squares.py, principal_component_analysis.py, random_forest.py, remove_selected_features_samples.py, remove_user_specified_row_col.py, retention_time_flags.py, run_order_regression.py, scatter_plot_2D.py, scatter_plot_3D.py, standardized_euclidean_distance.py, subset_data.py, summarize_flags.py, svm_classifier.py, tab-to-vcf, threshold_based_flags.py, ttest.py, ttest_perm.py, ttest_single_group.py, upset_plot.py, vcf-haplotypes, fill-aa, fill-an-ac, fill-fs, fill-ref-md5, vcf-annotate, vcf-compare, vcf-concat, vcf-consensus, vcf-contrast, vcf-convert |
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GITHUB
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quay.io/biocontainers/sed |
shpc-registry automated BioContainers addition for sed |
sed |
|
GITHUB
|
quay.io/biocontainers/seedme |
shpc-registry automated BioContainers addition for seedme |
seedme, seedme.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/seer |
shpc-registry automated BioContainers addition for seer |
combineKmers, filter_seer, kmds, map_back, seer, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff |
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GITHUB
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quay.io/biocontainers/segalign-full |
singularity registry hpc automated addition for segalign-full |
lastz, lastz_32, lastz_D, run_segalign, run_segalign_repeat_masker, segalign, segalign_repeat_masker, egrep, fgrep, grep, faToTwoBit, basenc, b2sum, ls, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd, df, dir |
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GITHUB
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quay.io/biocontainers/segalign-galaxy |
singularity registry hpc automated addition for segalign-galaxy |
bash, bashbug, lastz, lastz_32, lastz_D, run_segalign, run_segalign_repeat_masker, segalign, segalign_repeat_masker, time, gawk-5.3.0, egrep, fgrep, gawkbug, grep, faToTwoBit, basenc, b2sum, ls, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date |
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GITHUB
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quay.io/biocontainers/segemehl |
shpc-registry automated BioContainers addition for segemehl |
haarz.x, segemehl.x, htsfile, bgzip, tabix |
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GITHUB
|
quay.io/biocontainers/segmentation-fold |
shpc-registry automated BioContainers addition for segmentation-fold |
segmentation-fold, segmentation-fold-utils, htseq-count, htseq-qa, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config |
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GITHUB
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quay.io/biocontainers/segmetrics |
singularity registry hpc automated addition for segmetrics |
aomdec, aomenc, dask, dav1d, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, aec, imageio_download_bin, imageio_remove_bin, skivi, fitscopy, fpack, funpack, imcopy, smem, get_objgraph, undill, brotli, f2py3.10, opj_compress, opj_decompress |
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GITHUB
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quay.io/biocontainers/segtools |
shpc-registry automated BioContainers addition for segtools |
bigWigToBedGraph, discrete-mi, filter, fixTri.sh, generate_random_graph.pl, genomedata-close-data, genomedata-erase-data, genomedata-hardmask, genomedata-histogram, genomedata-info, genomedata-load, genomedata-load-assembly, genomedata-load-data, genomedata-load-seq, genomedata-open-data, genomedata-query, genomedata-report, gmtkDMLPtrain, gmtkDTindex, gmtkEMtrain, gmtkJT, gmtkKernel, gmtkMMItrain, gmtkModelInfo, gmtkNGramIndex, gmtkOnline, gmtkParmConvert, gmtkPrint, gmtkTFmerge, gmtkTie, gmtkTime, gmtkTriangulate, gmtkViterbi, hidehead, innerjoin, intersect, mean, nohead, obs-cat, obs-concat, obs-diff, obs-info, obs-print, obs-skmeans, obs-stats, obs-window, run_genomedata_tests.py, segtools-aggregation, segtools-compare, segtools-feature-distance, segtools-flatten, segtools-gmtk-parameters, segtools-html-report, segtools-length-distribution, segtools-nucleotide-frequency, segtools-overlap, segtools-preprocess, segtools-relabel, segtools-signal-distribution, segtools-transition, test_genomedata.py, triangulateGA, triangulateParallel, triangulateTimings, pt2to3, ptdump, ptrepack, pttree, cxpm, sxpm, my_print_defaults, mysql_config, perror, f2py3.6 |
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GITHUB
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quay.io/biocontainers/segul |
singularity registry hpc automated addition for segul |
segul |
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GITHUB
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quay.io/biocontainers/segway |
shpc-registry automated BioContainers addition for segway |
bigWigToBedGraph, discrete-mi, filter, fixTri.sh, generate_random_graph.pl, genomedata-close-data, genomedata-erase-data, genomedata-hardmask, genomedata-histogram, genomedata-info, genomedata-load, genomedata-load-assembly, genomedata-load-data, genomedata-load-seq, genomedata-open-data, genomedata-query, genomedata-report, gmtkDMLPtrain, gmtkDTindex, gmtkEMtrain, gmtkJT, gmtkKernel, gmtkMMItrain, gmtkModelInfo, gmtkNGramIndex, gmtkOnline, gmtkParmConvert, gmtkPrint, gmtkTFmerge, gmtkTie, gmtkTime, gmtkTriangulate, gmtkViterbi, hidehead, innerjoin, intersect, mean, nohead, obs-cat, obs-concat, obs-diff, obs-info, obs-print, obs-skmeans, obs-stats, obs-window, run_genomedata_tests.py, segway, segway-layer, segway-task, segway-winner, test_genomedata.py, triangulateGA, triangulateParallel, triangulateTimings, bedToBigBed, pt2to3, ptdump, ptrepack, pttree, my_print_defaults, mysql_config, perror, shiftBed, annotateBed |
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GITHUB
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quay.io/biocontainers/segzoo |
singularity registry hpc automated addition for segzoo |
bigWigToBedGraph, bsdcat, bsdcpio, bsdtar, check-sort-order, conda-build, conda-convert, conda-debug, conda-develop, conda-index, conda-inspect, conda-metapackage, conda-render, conda-skeleton, discrete-mi, filter, fixTri.sh, generate_random_graph.pl, genomedata-close-data, genomedata-erase-data, genomedata-hardmask, genomedata-histogram, genomedata-info, genomedata-load, genomedata-load-assembly, genomedata-load-data, genomedata-load-seq, genomedata-open-data, genomedata-query, genomedata-report, ggd, gmtkDMLPtrain, gmtkDTindex, gmtkEMtrain, gmtkJT, gmtkKernel, gmtkMMItrain, gmtkModelInfo, gmtkNGramIndex, gmtkOnline, gmtkParmConvert, gmtkPrint, gmtkTFmerge, gmtkTie, gmtkTime, gmtkTriangulate, gmtkViterbi, gsort, hidehead, innerjoin, intersect, mean, nohead, obs-cat, obs-concat, obs-diff, obs-info, obs-print, obs-skmeans, obs-stats, obs-window, patchelf, pkginfo, rg, run_genomedata_tests.py, segtools-aggregation, segtools-compare, segtools-feature-distance, segtools-flatten, segtools-gmtk-parameters, segtools-html-report, segtools-length-distribution, segtools-nucleotide-frequency, segtools-overlap, segtools-preprocess, segtools-relabel, segtools-signal-distribution, segtools-transition, segzoo, test_genomedata.py, triangulateGA, triangulateParallel, triangulateTimings, stone, conda-env, cph, plac_runner.py, yte, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, cyvcf2, docutils, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, cmark, pulptest, cbc, clp |
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GITHUB
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quay.io/biocontainers/seidr |
shpc-registry automated BioContainers addition for seidr |
anoverence, correlation, el-ensemble, genie3, llr-ensemble, mi, narromi, pcor, plsnet, seidr, svm-ensemble, tigress, tomsimilarity, clp, aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info, opal_wrapper, orte-clean, orte-info |
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GITHUB
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quay.io/biocontainers/seismic-rna |
singularity registry hpc automated addition for seismic-rna |
AccessFold, AllSub, CircleCompare, CycleFold, DuplexFold, DuplexFold-smp, DynalignDotPlot, EDcalculator, EDcalculator-smp, ETEcalculator, ETEcalculator-smp, EnergyPlot, EnsembleEnergy, Fold, Fold-smp, MaxExpect, MaxExpect-smp, NAPSS, OligoWalk, PARTS, ProbKnot, ProbKnot-smp, ProbScan, ProbabilityPlot, ProbablePair, ProbablePair-smp, RemovePseudoknots, RemovePseudoknots-smp, Rsample, Rsample-smp, ShapeKnots, ShapeKnots-smp, StructureProb, StructureProb-smp, SymmetryTester, TurboFold, TurboFold-smp, TurboHomology, bifold, bifold-smp, bipartition, bipartition-smp, ct2dot, design, design-smp, dot2ct, draw, dynalign, dynalign-smp, dynalign_ii, dynalign_ii-smp, efn2, efn2-smp, fastqsplitter, multilign, multilign-smp, oligoscreen, oligoscreen-smp, orega, orega-smp, partition, partition-smp, phmm, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, refold, scorer, seismic, stochastic, stochastic-smp, validate, annot-tsv, cutadapt, jwebserver, fastqc, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, pbunzip2, pbzcat, pbzip2, igzip, bowtie2, bowtie2-align-l, bowtie2-align-s |
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GITHUB
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quay.io/biocontainers/selam |
singularity registry hpc automated addition for selam |
SELAM, SELAM_STATS |
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GITHUB
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quay.io/biocontainers/selectfasta |
shpc-registry automated BioContainers addition for selectfasta |
selectFasta |
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GITHUB
|
quay.io/biocontainers/selectsequencesfrommsa |
shpc-registry automated BioContainers addition for selectsequencesfrommsa |
SelectSequencesFromMSA, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/selene-sdk |
shpc-registry automated BioContainers addition for selene-sdk |
selene_sdk, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, faidx, f2py3.7, opj_compress, opj_decompress, opj_dump, 2to3-3.7, idle3.7 |
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GITHUB
|
quay.io/biocontainers/selenzy_wrapper |
singularity registry hpc automated addition for selenzy_wrapper |
depinfo, filetype, httpx, pint-convert, search_zenodo, search_zenodo.py, slugify, upload_zenodo, upload_zenodo.py, isympy, obfitall, obmm, xmlget, xmltext, unidecode, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop, obrms, obrotamer, obrotate, obspectrophore, obsym, obtautomer, obthermo, aaindexextract, abiview |
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GITHUB
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quay.io/biocontainers/selscan |
shpc-registry automated BioContainers addition for selscan |
norm, selscan |
|
GITHUB
|
quay.io/biocontainers/semeta |
shpc-registry automated BioContainers addition for semeta |
SeMeta_Assign, SeMeta_Cluster, config.conf, test_pcre, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, seedtop, blast_formatter, blastdb_aliastool, blastdbcheck, blastdbcmd |
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GITHUB
|
quay.io/biocontainers/semibin |
shpc-registry automated BioContainers addition for semibin |
FragGeneScan, SemiBin, run_FragGeneScan.pl, torchrun, convert-caffe2-to-onnx, convert-onnx-to-caffe2, mmseqs, ninja, igraph, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis |
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GITHUB
|
quay.io/biocontainers/semidbm |
shpc-registry automated BioContainers addition for semidbm |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/sensv |
shpc-registry automated BioContainers addition for sensv |
Makefile, SURVIVOR, config.ini, grabix, pypy3, sensv, vcfnormalizesvs, vcfnull2ref, vcfunphase, gdbm_dump, gdbm_load, gdbmtool, plotBfst.R, plotHapLrt.R, plotHaplotypes.R, plotPfst.R, plotSmoothed.R, plotWCfst.R, plotXPEHH.R |
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GITHUB
|
quay.io/biocontainers/sentieon |
shpc-registry automated BioContainers addition for sentieon |
sentieon, sentieon-bwa, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/sepp-refgg138 |
shpc-registry automated BioContainers addition for sepp-refgg138 |
|
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GITHUB
|
quay.io/biocontainers/sepp-refsilva128 |
shpc-registry automated BioContainers addition for sepp-refsilva128 |
|
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GITHUB
|
quay.io/biocontainers/sepp |
shpc-registry automated BioContainers addition for sepp |
|
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GITHUB
|
quay.io/biocontainers/seq-gen |
shpc-registry automated BioContainers addition for seq-gen |
seq-gen |
|
GITHUB
|
quay.io/biocontainers/seq-hasher |
singularity registry hpc automated addition for seq-hasher |
seq-hasher |
|
GITHUB
|
quay.io/biocontainers/seq-seq-pan |
shpc-registry automated BioContainers addition for seq-seq-pan |
addUnalignedIntervals, alignmentProjector, backbone_global_to_local, bbAnalyze, bbFilter, coordinateTranslate, createBackboneMFA, extractBCITrees, faToNib, getAlignmentWindows, getOrthologList, gfClient, gfServer, makeBadgerMatrix, mauveAligner, mauveStatic, mauveToXMFA, mfa2xmfa, nibFrag, progressiveMauve, progressiveMauveStatic, projectAndStrip, pslPretty, pslReps, pslSort, randomGeneSample, repeatoire, scoreAlignment, seq-seq-pan, seq-seq-pan-consensus, seq-seq-pan-genomedescription, seq-seq-pan-wga, stripGapColumns, stripSubsetLCBs, toGrimmFormat, toMultiFastA, toRawSequence, uniqueMerCount, uniquifyTrees, xmfa2maf, twoBitToFa, blat, twoBitInfo, faToTwoBit, snakemake, snakemake-bash-completion, rst2html4.py, appletviewer, idlj, orbd |
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GITHUB
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quay.io/biocontainers/seq-to-first-iso |
shpc-registry automated BioContainers addition for seq-to-first-iso |
seq-to-first-iso, compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, qwebengine_convert_dict |
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GITHUB
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quay.io/biocontainers/seq2c |
shpc-registry automated BioContainers addition for seq2c |
cov2lr.pl, lr2gene.pl, seq2cov.pl, perl5.26.2, podselect |
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GITHUB
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quay.io/biocontainers/seq2hla |
shpc-registry automated BioContainers addition for seq2hla |
seq2HLA, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect, f2py2 |
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GITHUB
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quay.io/biocontainers/seq2onehot |
shpc-registry automated BioContainers addition for seq2onehot |
seq2onehot, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/seq2science |
shpc-registry automated BioContainers addition for seq2science |
bedToGenePred, bsdcat, bsdcpio, bsdtar, conda2solv, deseq2science, dumpsolv, genePredToBed, genePredToGtf, genomepy, gff3ToGenePred, gtfToGenePred, installcheck, mamba, mamba-package, mergesolv, pysradb, repo2solv, seq2science, testsolv, nosetests-3.9, conda-env, cph, plac_runner.py, yte, docutils, xml2-config.bak, nosetests, pulptest, activate-global-python-argcomplete |
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GITHUB
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quay.io/biocontainers/seqan |
shpc-registry automated BioContainers addition for seqan |
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GITHUB
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quay.io/biocontainers/seqan3 |
shpc-registry automated BioContainers addition for seqan3 |
|
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GITHUB
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quay.io/biocontainers/seqan_tcoffee |
shpc-registry automated BioContainers addition for seqan_tcoffee |
seqan_tcoffee |
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GITHUB
|
quay.io/biocontainers/seqbuster |
shpc-registry automated BioContainers addition for seqbuster |
miraligner, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/seqchromloader |
singularity registry hpc automated addition for seqchromloader |
pyfasta, torchrun, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tensorboard, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, markdown_py, protoc, normalizer, tqdm, shiftBed, annotateBed, bamToBed |
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GITHUB
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quay.io/biocontainers/seqcluster |
shpc-registry automated BioContainers addition for seqcluster |
RNAmultifold, mirtop, seqcluster, seqcluster_install, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold |
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GITHUB
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quay.io/biocontainers/seqcomplexity |
singularity registry hpc automated addition for seqcomplexity |
seqcomplexity |
|
GITHUB
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quay.io/biocontainers/seqerakit |
singularity registry hpc automated addition for seqerakit |
seqerakit, tw, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/seqfold |
singularity registry hpc automated addition for seqfold |
seqfold, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
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quay.io/biocontainers/seqfu |
shpc-registry automated BioContainers addition for seqfu |
dadaist2-mergeseqs, fu-16Sregion, fu-cov, fu-homocomp, fu-index, fu-msa, fu-multirelabel, fu-nanotags, fu-orf, fu-primers, fu-shred, fu-sw, fu-tabcheck, fu-virfilter, seqfu |
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GITHUB
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quay.io/biocontainers/seqhax |
shpc-registry automated BioContainers addition for seqhax |
pecheck-wrapper.py, seqhax |
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GITHUB
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quay.io/biocontainers/seqiolib |
shpc-registry automated BioContainers addition for seqiolib |
import_pb_to_tensorboard, estimator_ckpt_converter, google-oauthlib-tool, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tf_upgrade_v2 |
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GITHUB
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quay.io/biocontainers/seqkit |
shpc-registry automated BioContainers addition for seqkit |
seqkit |
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GITHUB
|
quay.io/biocontainers/seqlike |
shpc-registry automated BioContainers addition for seqlike |
transformseq, weblogo, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500, gslj, gslp |
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GITHUB
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quay.io/biocontainers/seqlogo |
shpc-registry automated BioContainers addition for seqlogo |
transformseq, weblogo, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500, gslj, gslp |
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GITHUB
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quay.io/biocontainers/seqmagick |
shpc-registry automated BioContainers addition for seqmagick |
seqmagick, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/seqmap |
shpc-registry automated BioContainers addition for seqmap |
seqmap |
|
GITHUB
|
quay.io/biocontainers/seqnado |
singularity registry hpc automated addition for seqnado |
cnitool, cookiecutter, mksquashfs, protoc-25.2.0, run-singularity, scmp_sys_resolver, seqnado, seqnado-config, seqnado-design, singularity, sqfscat, sqfstar, tracknado, unsquashfs, slugify, bsdcat, bsdcpio, bsdtar, markdown-it, stone, yte, plac_runner.py, docutils, pulptest, cbc, clp, jp.py, snakemake, snakemake-bash-completion, tabulate, jupyter-trust, py.test, pytest, jupyter, jupyter-migrate, jupyter-troubleshoot, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen |
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GITHUB
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quay.io/biocontainers/seqprep |
shpc-registry automated BioContainers addition for seqprep |
SeqPrep |
|
GITHUB
|
quay.io/biocontainers/seqscreen |
shpc-registry automated BioContainers addition for seqscreen |
attr, balsam, centrifuge, centrifuge-BuildSharedSequence.pl, centrifuge-RemoveEmptySequence.pl, centrifuge-RemoveN.pl, centrifuge-build, centrifuge-build-bin, centrifuge-class, centrifuge-compress.pl, centrifuge-download, centrifuge-inspect, centrifuge-inspect-bin, centrifuge-kreport, centrifuge-sort-nt.pl, dataformat, datasets, esdcompat, gdrive, getfattr, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, lprodump, lrelease-pro, lupdate-pro, meshdebug, nextflow, nextflow.bak, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, prerapsearch, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, rapsearch, seqscreen, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, time, tracegen, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set |
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GITHUB
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quay.io/biocontainers/seqsero2 |
shpc-registry automated BioContainers addition for seqsero2 |
Initial_Conditions.py, SalmID.py, SeqSero2_package.py, SeqSero2_update_kmer_database.py, abi-dump.2.10.9, align-cache.2.10.9, align-info.2.10.9, bam-load.2.10.9, cache-mgr.2.10.9, cg-load.2.10.9, deinterleave_fastq.sh, fasterq-dump-orig.2.10.9, fasterq-dump.2.10.9, fastq-dump-orig.2.10.9, fastq-dump.2.10.9, illumina-dump.2.10.9, kar.2.10.9, kdbmeta.2.10.9, kget.2.10.9, latf-load.2.10.9, md5cp.2.10.9, prefetch-orig.2.10.9, prefetch.2.10.9, rcexplain.2.10.9, read-filter-redact.2.10.9, sam-dump-orig.2.10.9, sam-dump.2.10.9, sff-dump.2.10.9, sra-pileup-orig.2.10.9, sra-pileup.2.10.9, sra-sort-cg.2.10.9, sra-sort.2.10.9, sra-stat.2.10.9, srapath-orig.2.10.9, srapath.2.10.9, sratools.2.10.9, test-sra.2.10.9, vdb-config.2.10.9, vdb-copy.2.10.9, vdb-decrypt.2.10.9, vdb-diff.2.10.9, vdb-dump-orig.2.10.9, vdb-dump.2.10.9, vdb-encrypt.2.10.9, vdb-lock.2.10.9, vdb-passwd.2.10.9, vdb-unlock.2.10.9, vdb-validate.2.10.9, align-cache.2, md5cp.2, read-filter-redact.2, sra-sort-cg.2, vdb-diff.2, align-cache, fasterq-dump-orig, fastq-dump-orig, md5cp, prefetch-orig |
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GITHUB
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quay.io/biocontainers/seqsizzle |
singularity registry hpc automated addition for seqsizzle |
seqsizzle |
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GITHUB
|
quay.io/biocontainers/seqspec |
singularity registry hpc automated addition for seqspec |
seqspec, numpy-config, jsonschema, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, normalizer |
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GITHUB
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quay.io/biocontainers/seqstats |
shpc-registry automated BioContainers addition for seqstats |
seqstats |
|
GITHUB
|
quay.io/biocontainers/seqstr |
singularity registry hpc automated addition for seqstr |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, seqstr, faidx, normalizer, python3.1 |
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GITHUB
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quay.io/biocontainers/seqtk |
shpc-registry automated BioContainers addition for seqtk |
seqtk |
|
GITHUB
|
quay.io/biocontainers/sequali |
singularity registry hpc automated addition for sequali |
pygal_gen.py, sequali, sequali-report, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, tqdm, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/sequana |
shpc-registry automated BioContainers addition for sequana |
|
|
GITHUB
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quay.io/biocontainers/sequana_pipetools |
singularity registry hpc automated addition for sequana_pipetools |
pykwalify, sequana_completion, sequana_slurm_status, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, browse, normalizer, tqdm, python3.1 |
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GITHUB
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quay.io/biocontainers/sequencetools |
shpc-registry automated BioContainers addition for sequencetools |
genoStats, pileupCaller, vcf2eigenstrat, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa |
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GITHUB
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quay.io/biocontainers/sequenoscope |
singularity registry hpc automated addition for sequenoscope |
sequenoscope, fastp, capnp, capnpc, capnpc-c++, capnpc-capnp, seqtk, mash, igzip, sdust, k8, paftools.js, minimap2, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl |
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GITHUB
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quay.io/biocontainers/sequenza-utils |
shpc-registry automated BioContainers addition for sequenza-utils |
sequenza-utils, fasta-sanitize.pl, plot-ampliconstats, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ace2sam |
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GITHUB
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quay.io/biocontainers/sequip |
singularity registry hpc automated addition for sequip |
opts-example-required.pl, opts-example.pl, perl5.32.1, streamzip |
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GITHUB
|
quay.io/biocontainers/sequnwinder |
shpc-registry automated BioContainers addition for sequnwinder |
dtc, enr, fasta-from-bed, fasta-re-match, index-fasta-file, meme-chip_html_to_tsv, momo, sequnwinder, streme, streme_xml_to_html, tgene, alphtype, ama, ama-qvalues, ame, beeml2meme, centrimo, ceqlogo, chen2meme, clustalw2fasta, clustalw2phylip |
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GITHUB
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quay.io/biocontainers/seqverify |
singularity registry hpc automated addition for seqverify |
cnvpytor, seqver_functions.py, seqver_transgenes.py, seqverify, h5delete, kraken2, kraken2-build, kraken2-inspect, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, test_pcre, vba_extract.py, aec, tar, qualfa2fq.pl, xa2multi.pl, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, bwa, align-columns, blst2tkns |
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GITHUB
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quay.io/biocontainers/seqwish |
shpc-registry automated BioContainers addition for seqwish |
seqwish, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/seqyclean |
shpc-registry automated BioContainers addition for seqyclean |
seqyclean |
|
GITHUB
|
quay.io/biocontainers/sercol |
singularity registry hpc automated addition for sercol |
f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/seroba |
shpc-registry automated BioContainers addition for seroba |
ariba, seroba, kmc, kmc_dump, kmc_tools, fastaq, FET.pl, cd-hit-clstr_2_blm8.pl, cds-mapping-stats, cds-subgraphs, clstr_list.pl, clstr_list_sort.pl |
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GITHUB
|
quay.io/biocontainers/serotypefinder |
shpc-registry automated BioContainers addition for serotypefinder |
kma, kma_index, kma_shm, kma_update, serotypefinder, update-serotypefinder-db, CA.pm, cacert.pem, index-themes, tabulate, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras, pm-collect |
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GITHUB
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quay.io/biocontainers/sesimcmc |
shpc-registry automated BioContainers addition for sesimcmc |
SeSiMCMC |
|
GITHUB
|
quay.io/biocontainers/setsimilaritysearch |
shpc-registry automated BioContainers addition for setsimilaritysearch |
all_pairs.py, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/setuptools_cython |
shpc-registry automated BioContainers addition for setuptools_cython |
cygdb, cython, cythonize, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/setuptools_scm |
shpc-registry automated BioContainers addition for setuptools_scm |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
|
quay.io/biocontainers/seurat-scripts |
shpc-registry automated BioContainers addition for seurat-scripts |
r-seurat-scripts-post-install-tests.bats, r-seurat-scripts-post-install-tests.sh, seurat-classify-against-reference.R, seurat-convert.R, seurat-dim-plot.R, seurat-export-cellbrowser.R, seurat-filter-cells.R, seurat-find-clusters.R, seurat-find-conserved-markers.R, seurat-find-markers.R, seurat-find-neighbours.R, seurat-find-variable-genes.R, seurat-get-random-genes.R, seurat-hover-locator.R, seurat-integration.R, seurat-map-query.R, seurat-normalise-data.R, seurat-plot.R, seurat-read-10x.R, seurat-read.R, seurat-run-pca.R, seurat-run-tsne.R, seurat-run-umap.R, seurat-scale-data.R, seurat-select-integration-features.R, seurat-split-object.R, mirror_server, mirror_server_stop, build_env_setup.sh, conda_build.sh, pandoc, h5clear, h5format_convert, h5watch, h5fc, gif2h5 |
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GITHUB
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quay.io/biocontainers/sevenbridges-python |
shpc-registry automated BioContainers addition for sevenbridges-python |
chardetect, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/severus |
singularity registry hpc automated addition for severus |
severus, hb-info, diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts, transform, rsvg-convert, gtk-builder-convert, gtk-demo, gtk-query-immodules-2.0, gtk-update-icon-cache, acyclic, bcomps, ccomps, circo, dijkstra, dot, dot2gxl, dot_builtins |
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GITHUB
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quay.io/biocontainers/sexdeterrmine |
shpc-registry automated BioContainers addition for sexdeterrmine |
sexdeterrmine, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/sff2fastq |
shpc-registry automated BioContainers addition for sff2fastq |
sff2fastq |
|
GITHUB
|
quay.io/biocontainers/sfld |
shpc-registry automated BioContainers addition for sfld |
sfld_postprocess, sfld_preprocess, sfld_preprocess.py |
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GITHUB
|
quay.io/biocontainers/sfold |
singularity registry hpc automated addition for sfold |
bp_count.pl, bprob.X86_64.LINUX, find.dist.X86_64.LINUX, findfe, findfe.X86_64.LINUX, gawk-5.3.1, gcg2bp.pl, getu0.X86_64.LINUX, getu0.X86_64.SUNOS, hybrid_en.pl, sclass.X86_64.LINUX, sfold, sfold.X86_64.LINUX, sfold.pl, sfold.pl~, showsysinfo.sh, egrep, fgrep, grep, gawkbug, awk, gawk, hb-info, tjbench |
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GITHUB
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quay.io/biocontainers/sfs |
singularity registry hpc automated addition for sfs |
sfs |
|
GITHUB
|
quay.io/biocontainers/sga |
shpc-registry automated BioContainers addition for sga |
sga, sga-astat.py, sga-bam2de.pl, sga-mergeDriver.pl, bamtools |
|
GITHUB
|
quay.io/biocontainers/sga_ice |
singularity registry hpc automated addition for sga_ice |
SGA-ICE.py, sga, sga-astat.py, sga-bam2de.pl, sga-mergeDriver.pl, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, bamtools, python3.1 |
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GITHUB
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quay.io/biocontainers/sgcocaller |
shpc-registry automated BioContainers addition for sgcocaller |
sgcocaller, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/sgdemux |
singularity registry hpc automated addition for sgdemux |
sgdemux |
|
GITHUB
|
quay.io/biocontainers/shannon |
shpc-registry automated BioContainers addition for shannon |
algorithm_SF.py, dsdp5, ext_corr.py, extension_correction.py, extension_correction_Kminus1.py, fast_reps.py, faster_reps.py, filter_FP.py, filter_FP_2s.py, filter_kallisto.py, filter_trans.py, find_reps_blat.py, kmers_for_component.py, kmers_for_component_back.py, kp1mer_to_kmer.py, mbgraph.py, merge_mate_pairs, multibridging.py, parallel_blat.py, parallel_blat_python.py, path_decompose_sparse.py, process_concatenated_fasta.py, quorum, quorum_create_database, quorum_error_correct_reads, rc_gnu.py, rc_s.py, run_MB_SF.py, run_MB_SF_fn.py, run_parallel_cmds.py, run_quorum.py, shannon.py, split_mate_pairs, test.py, test_suite.py, tester.py, trie.py, weight_updated_graph.py, jellyfish, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis, ndmetis, env_parallel, env_parallel.ash, env_parallel.bash |
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GITHUB
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quay.io/biocontainers/shannon_cpp |
shpc-registry automated BioContainers addition for shannon_cpp |
rcorrector, run_rcorrector.pl, shannon_cpp, syrupy.py, jellyfish, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis, ndmetis, basenc, b2sum, base32 |
|
GITHUB
|
quay.io/biocontainers/shape_it |
shpc-registry automated BioContainers addition for shape_it |
babel, obchiral, shape-it, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop |
|
GITHUB
|
quay.io/biocontainers/shapeit |
shpc-registry automated BioContainers addition for shapeit |
|
|
GITHUB
|
quay.io/biocontainers/shapeit4 |
shpc-registry automated BioContainers addition for shapeit4 |
shapeit4, shapeit4.2, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/shapeit5 |
singularity registry hpc automated addition for shapeit5 |
SHAPEIT5_ligate, SHAPEIT5_phase_common, SHAPEIT5_phase_rare, SHAPEIT5_switch, htsfile, bgzip, tabix |
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GITHUB
|
quay.io/biocontainers/shapely |
singularity registry hpc automated addition for shapely |
numpy-config, geosop, geos-config, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
|
quay.io/biocontainers/shapemapper |
shpc-registry automated BioContainers addition for shapemapper |
AccessFold, AllSub, CircleCompare, CycleFold, DuplexFold, DuplexFold-smp, DynalignDotPlot, EDcalculator, EDcalculator-smp, EXAMPLE.cfg, EnergyPlot, EnsembleEnergy, Fold, Fold-smp, MaxExpect, MaxExpect-smp, NAPSS, OligoWalk, PARTS, ProbKnot, ProbKnot-smp, ProbScan, ProbabilityPlot, ProbablePair, ProbablePair-smp, RemovePseudoknots, RemovePseudoknots-smp, Rsample, Rsample-smp, ShapeKnots, ShapeKnots-smp, ShapeMapper.py, TurboFold, TurboFold-smp, bifold, bifold-smp, bipartition, bipartition-smp, conf.py, countMutations, countMutations.py, ct2dot, defaults.cfg, design, dot2ct, draw, dynalign, dynalign-smp, dynalign_ii, dynalign_ii-smp, efn2, efn2-smp, generateReactivityProfiles.py, makeOldMutationStrings.py, multilign, multilign-smp, oligoscreen, oligoscreen-smp, parseAlignment, parseConfigFile.py, partition, partition-smp, perl5.22.2, phmm, pivotCSV.py, pvclient.py, refold, scorer, stochastic, stochastic-smp, trimPhred, validate, c2ph, pstruct, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l |
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GITHUB
|
quay.io/biocontainers/shapeshifter-cli |
shpc-registry automated BioContainers addition for shapeshifter-cli |
plasma_store_server, pzstd, shapeshift, shapeshiftmerge, ss, ssm, thrift, plasma_store, gflags_completions.sh, runxlrd.py, vba_extract.py, jupyter-trust, jupyter, jupyter-migrate, jupyter-troubleshoot, jsonschema, protoc |
|
GITHUB
|
quay.io/biocontainers/shapeshifter |
shpc-registry automated BioContainers addition for shapeshifter |
|
|
GITHUB
|
quay.io/biocontainers/sharedmem |
shpc-registry automated BioContainers addition for sharedmem |
f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/sharg |
singularity registry hpc automated addition for sharg |
|
|
GITHUB
|
quay.io/biocontainers/shark |
shpc-registry automated BioContainers addition for shark |
shark |
|
GITHUB
|
quay.io/biocontainers/shasta |
shpc-registry automated BioContainers addition for shasta |
shasta, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/shellescape |
shpc-registry automated BioContainers addition for shellescape |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/sherpas |
shpc-registry automated BioContainers addition for sherpas |
SHERPAS |
|
GITHUB
|
quay.io/biocontainers/shigapass |
singularity registry hpc automated addition for shigapass |
ShigaPass.sh, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gbf2fsa, gbf2ref, gm2ranges, gm2segs, ini2xml, jsonl2xml |
|
GITHUB
|
quay.io/biocontainers/shigatyper |
shpc-registry automated BioContainers addition for shigatyper |
shigatyper, gff2gff.py, sdust, paftools.js, minimap2, k8, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats |
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GITHUB
|
quay.io/biocontainers/shigeifinder |
shpc-registry automated BioContainers addition for shigeifinder |
shigeifinder, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides |
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GITHUB
|
quay.io/biocontainers/shiptv |
shpc-registry automated BioContainers addition for shiptv |
shiptv, cmark, pygmentize, futurize, pasteurize, chardetect, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9 |
|
GITHUB
|
quay.io/biocontainers/shiver |
shpc-registry automated BioContainers addition for shiver |
basqcol, fetchseq, mixreads, readstats, shiver_align_contigs.sh, shiver_config.sh, shiver_full_auto.sh, shiver_funcs.sh, shiver_init.sh, shiver_map_reads.sh, shiver_reprocess_bam.sh, simqual, simread, smalt, splitmates, splitreads, trunkreads, createfontdatachunk.py, picard, enhancer.py, explode.py, fastaq, gifmaker.py, painter.py, player.py, thresholder.py, viewer.py |
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GITHUB
|
quay.io/biocontainers/shmlast |
shpc-registry automated BioContainers addition for shmlast |
doit, fastq-interleave, last-dotplot, last-map-probs, last-merge-batches, last-pair-probs, last-postmask, last-split, last-split8, last-train, lastal, lastal8, lastdb, lastdb8, maf-convert, maf-join, maf-sort, maf-swap, ope, parallel-fasta, parallel-fastq, perl5.30.3, shmlast, screed, parsort, env_parallel, env_parallel.ash, env_parallel.bash, env_parallel.csh, env_parallel.dash, env_parallel.fish, env_parallel.ksh, env_parallel.mksh |
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GITHUB
|
quay.io/biocontainers/shorah |
shpc-registry automated BioContainers addition for shorah |
b2w, diri_sampler, fil, shorah, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, htsfile |
|
GITHUB
|
quay.io/biocontainers/short-read-connector |
singularity registry hpc automated addition for short-read-connector |
SRC_counter, SRC_linker, dsk, dsk2ascii, extract_reads_from_bv, generate_bv, short_read_connector_counter.sh, short_read_connector_linker.sh, h5cc |
|
GITHUB
|
quay.io/biocontainers/shortreadconnector |
shpc-registry automated BioContainers addition for shortreadconnector |
SRC_counter, SRC_linker_ram, dsk, dsk2ascii, extract_reads_from_bv, generate_bv, short_read_connector.sh, h5dump |
|
GITHUB
|
quay.io/biocontainers/shortreadsconnector |
shpc-registry automated BioContainers addition for shortreadsconnector |
SRC_counter, SRC_linker_ram, dsk, dsk2ascii, extract_reads_from_bv, generate_bv, short_read_connector.sh, h5dump |
|
GITHUB
|
quay.io/biocontainers/shortstack |
shpc-registry automated BioContainers addition for shortstack |
ShortStack, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold |
|
GITHUB
|
quay.io/biocontainers/shorttracks |
singularity registry hpc automated addition for shorttracks |
ShortTracks, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, wigToBigWig, my_print_defaults, mysql_config, perror, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl |
|
GITHUB
|
quay.io/biocontainers/shovill-se |
shpc-registry automated BioContainers addition for shovill-se |
lighter, shovill, shovill-se, skesa, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, flash, megahit, megahit_toolkit, pilon, samclip, velvetg, velveth |
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GITHUB
|
quay.io/biocontainers/shovill |
shpc-registry automated BioContainers addition for shovill |
|
|
GITHUB
|
quay.io/biocontainers/showit |
shpc-registry automated BioContainers addition for showit |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, jpgicc, linkicc, psicc, tificc |
|
GITHUB
|
quay.io/biocontainers/shustring |
shpc-registry automated BioContainers addition for shustring |
shustring |
|
GITHUB
|
quay.io/biocontainers/siann |
shpc-registry automated BioContainers addition for siann |
make_database.sh, siann.py, time, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot |
|
GITHUB
|
quay.io/biocontainers/sibelia |
shpc-registry automated BioContainers addition for sibelia |
C-Sibelia.py, Sibelia, snpEffAnnotate.py |
|
GITHUB
|
quay.io/biocontainers/sibeliaz |
shpc-registry automated BioContainers addition for sibeliaz |
graphdump, maf2synteny, sibeliaz, sibeliaz-lcb, spoa, twopaco |
|
GITHUB
|
quay.io/biocontainers/sicer |
shpc-registry automated BioContainers addition for sicer |
|
|
GITHUB
|
quay.io/biocontainers/sicer2 |
shpc-registry automated BioContainers addition for sicer2 |
recognicer, recognicer_df, sicer, sicer_df, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/sickle-trim |
shpc-registry automated BioContainers addition for sickle-trim |
sickle |
|
GITHUB
|
quay.io/biocontainers/sickle |
shpc-registry automated BioContainers addition for sickle |
|
|
GITHUB
|
quay.io/biocontainers/sidr |
shpc-registry automated BioContainers addition for sidr |
sidr, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/sierrapy |
shpc-registry automated BioContainers addition for sierrapy |
gql-cli, sierrapy, normalizer, tqdm, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/sift4g |
shpc-registry automated BioContainers addition for sift4g |
sift4g |
|
GITHUB
|
quay.io/biocontainers/sigmut |
shpc-registry automated BioContainers addition for sigmut |
sigprofiler, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc |
|
GITHUB
|
quay.io/biocontainers/sigprofilerassignment |
singularity registry hpc automated addition for sigprofilerassignment |
SigProfilerAssignment, SigProfilerMatrixGenerator, SigProfilerPlotting, bsdunzip, convertfilestopdf, convertfilestops, convertformat, convertsegfilestopdf, convertsegfilestops, converttopdf, converttops, fileinfo, imagetops, jbig2dec, mupdf-gl, mupdf-x11, mupdf-x11-curl, muraster, mutool, pymupdf, tesseract, xtractprotos, pdfsig, bsdcat, bsdcpio, bsdtar, pdfattach, pdfdetach, pdffonts, pdfimages, pdfinfo, pdfseparate, pdftocairo, pdftohtml, pdftoppm, pdftops, pdftotext, pdfunite, certutil, nspr-config, nss-config, pk12util, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config |
|
GITHUB
|
quay.io/biocontainers/sigprofilermatrixgenerator |
singularity registry hpc automated addition for sigprofilermatrixgenerator |
SigProfilerMatrixGenerator, SigProfilerPlotting, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/sigprofilerplotting |
singularity registry hpc automated addition for sigprofilerplotting |
SigProfilerPlotting, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/simba |
shpc-registry automated BioContainers addition for simba |
torchbiggraph_config, torchbiggraph_eval, torchbiggraph_example_fb15k, torchbiggraph_example_livejournal, torchbiggraph_export_to_tsv, torchbiggraph_import_from_parquet, torchbiggraph_import_from_tsv, torchbiggraph_partitionserver, torchbiggraph_train, torchrun, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, pt2to3, ptdump, ptrepack, pttree, numba, pycc, natsort |
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GITHUB
|
quay.io/biocontainers/simba_pbg |
singularity registry hpc automated addition for simba_pbg |
hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, torchbiggraph_config, torchbiggraph_eval, torchbiggraph_example_fb15k, torchbiggraph_example_livejournal, torchbiggraph_export_to_tsv, torchbiggraph_import_from_parquet, torchbiggraph_import_from_tsv, torchbiggraph_partitionserver, torchbiggraph_train, torchrun, aec, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, protoc, tqdm, f2py3.9, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp, h5perf_serial, h5redeploy, h5repack, h5repart |
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GITHUB
|
quay.io/biocontainers/simbac |
shpc-registry automated BioContainers addition for simbac |
SimBac |
|
GITHUB
|
quay.io/biocontainers/simka |
shpc-registry automated BioContainers addition for simka |
simka, simkaCount, simkaCountProcess, simkaMerge, simkaMin.py, simkaMinCore, simkaMin_update.py, simkaMin_utils.py, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/simlord |
shpc-registry automated BioContainers addition for simlord |
simlord, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/simple_sv_annotation |
shpc-registry automated BioContainers addition for simple_sv_annotation |
simple_sv_annotation.py, vcf_sample_filter.py, vcf_filter.py, vcf_melt, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config |
|
GITHUB
|
quay.io/biocontainers/simpleaf |
shpc-registry automated BioContainers addition for simpleaf |
alevin-fry, pyroe, simpleaf, salmon, scanpy, docutils, x86_64-conda_cos7-linux-gnu-ld, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, tabulate |
|
GITHUB
|
quay.io/biocontainers/simplejson |
shpc-registry automated BioContainers addition for simplejson |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/simplesam |
shpc-registry automated BioContainers addition for simplesam |
pileup.py, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/simscsntree |
shpc-registry automated BioContainers addition for simscsntree |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/simug |
shpc-registry automated BioContainers addition for simug |
gunzip, gzexe, gzip, simuG, uncompress, vcf2model, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zless, zmore, znew, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/simwalk2 |
shpc-registry automated BioContainers addition for simwalk2 |
simwalk2 |
|
GITHUB
|
quay.io/biocontainers/sina |
shpc-registry automated BioContainers addition for sina |
arb_2_ascii, arb_2_bin, arb_a2ps, arb_consensus_tree, arb_convert_aln, arb_db_server, arb_dnarates, arb_export_rates, arb_export_tree, arb_flush_mem, arb_gene_probe, arb_help2xml, arb_message, arb_naligner, arb_name_server, arb_notify, arb_primer, arb_probe, arb_proto_2_xsub, arb_pt_server, arb_read_tree, arb_readseq, arb_replace, arb_rnacma, arb_treegen, sina, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/sincei |
singularity registry hpc automated addition for sincei |
bigwigAverage, loompy, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex, rst2xml, scBulkCoverage, scClusterCells, scCombineCounts, scCountQC, scCountReads, scFilterBarcodes, scFilterStats, scJSD, sincei, validate-docstrings, alignmentSieve, bamCompare, bamCoverage, bamPEFragmentSize, bigwigCompare, computeGCBias, computeMatrix, computeMatrixOperations, correctGCBias, deeptools, estimateReadFiltering, estimateScaleFactor, multiBamSummary, multiBigwigSummary, plotCorrelation, plotCoverage, plotEnrichment, plotFingerprint, plotHeatmap, plotPCA, plotProfile, h5tools_test_utils, igraph, sphinx-apidoc, sphinx-autogen |
|
GITHUB
|
quay.io/biocontainers/singlecell-barcodes |
shpc-registry automated BioContainers addition for singlecell-barcodes |
|
|
GITHUB
|
quay.io/biocontainers/singlecellnet-cli |
shpc-registry automated BioContainers addition for singlecellnet-cli |
bats, scn-post-install-tests.bats, scn-post-install-tests.sh, scn-predict.R, scn-train-model.R, build_env_setup.sh, conda_build.sh, f2py3.9, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++ |
|
GITHUB
|
quay.io/biocontainers/singlem |
shpc-registry automated BioContainers addition for singlem |
AbstractPlot.py, ExpressBetaDiversity, convertToEBD.py, convertToFullMatrix.py, faker, graftM, ktClassifyHits, ktImportHits, mfqe, orator, orfm, pcoaPlot.py, singlem, smafa, taxit, ktClassifyBLAST, ktGetContigMagnitudes, ktGetLCA, ktGetLibPath, ktGetTaxIDFromAcc, ktGetTaxInfo, ktImportBLAST, ktImportDiskUsage, ktImportEC, ktImportFCP |
|
GITHUB
|
quay.io/biocontainers/singularity |
shpc-registry automated BioContainers addition for singularity |
bsdcat, bsdcpio, bsdtar, cnitool, docker-run.sh, exec-plugins.sh, jq, mksquashfs, onig-config, priv-net-run.sh, release.sh, run-singularity, scmp_sys_resolver, singularity, unsquashfs |
|
GITHUB
|
quay.io/biocontainers/sinto |
shpc-registry automated BioContainers addition for sinto |
sinto, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/sipros |
singularity registry hpc automated addition for sipros |
EnsembleScripts_sipros_ensemble_filtering, EnsembleScripts_sipros_peptides_assembling, EnsembleScripts_sipros_prepare_protein_database, EnsembleScripts_sipros_psm_tabulating, Raxport, Raxport.exe, SiprosEnsembleOMP, SiprosV4OMP, V4Scripts_ClusterSip, V4Scripts_getLabelPCTinEachFT, V4Scripts_getSpectraCountInEachFT, V4Scripts_makeDBforLabelSearch, V4Scripts_refineProteinFDR, V4Scripts_sipros_peptides_assembling, V4Scripts_sipros_peptides_filtering, aprofutil, configGenerator, copyConfigTemplate, mono-hang-watchdog, csc, csi, illinkanalyzer, vbc, mono-package-runtime, sgen-grep-binprot, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr, chktrust, crlupdate, csharp, dmcs, dtd2rng, dtd2xsd, gacutil, gacutil2, genxs, httpcfg, ikdasm |
|
GITHUB
|
quay.io/biocontainers/sirius-csifingerid |
shpc-registry automated BioContainers addition for sirius-csifingerid |
sirius, sirius-gui |
|
GITHUB
|
quay.io/biocontainers/sis |
shpc-registry automated BioContainers addition for sis |
multifasta.py, sis.py, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot |
|
GITHUB
|
quay.io/biocontainers/sistr_cmd |
shpc-registry automated BioContainers addition for sistr_cmd |
sistr, test_pcre, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf |
|
GITHUB
|
quay.io/biocontainers/sixgill |
shpc-registry automated BioContainers addition for sixgill |
sixgill_build, sixgill_filter, sixgill_makefasta, sixgill_merge, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/sizemeup |
singularity registry hpc automated addition for sizemeup |
sizemeup, sizemeup-build, sizemeup-main, rich-click, markdown-it, pygmentize, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, normalizer |
|
GITHUB
|
quay.io/biocontainers/ska |
shpc-registry automated BioContainers addition for ska |
ska |
|
GITHUB
|
quay.io/biocontainers/ska2 |
singularity registry hpc automated addition for ska2 |
ska |
|
GITHUB
|
quay.io/biocontainers/skani |
singularity registry hpc automated addition for skani |
skani |
|
GITHUB
|
quay.io/biocontainers/skc |
singularity registry hpc automated addition for skc |
skc |
|
GITHUB
|
quay.io/biocontainers/skder |
singularity registry hpc automated addition for skder |
gimme_taxa.py, ncbi-genome-download, ngd, pyfastx, skDER.py, skDERcore, skani, tqdm, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/skesa |
shpc-registry automated BioContainers addition for skesa |
skesa, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/sketchy |
shpc-registry automated BioContainers addition for sketchy |
sketchy |
|
GITHUB
|
quay.io/biocontainers/skewer |
shpc-registry automated BioContainers addition for skewer |
skewer |
|
GITHUB
|
quay.io/biocontainers/skmer |
shpc-registry automated BioContainers addition for skmer |
skmer, capnp, capnpc, capnpc-c++, capnpc-capnp, jellyfish, mash, seqtk, f2py3.10, 2to3-3.10, idle3.10 |
|
GITHUB
|
quay.io/biocontainers/skyline2isocor |
singularity registry hpc automated addition for skyline2isocor |
skyline2isocor, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/slamdunk |
shpc-registry automated BioContainers addition for slamdunk |
addr2line, alleyoop, ar, as, c++filt, dwp, elfedit, gold, gprof, ld, ld.bfd, ld.gold, ngm, ngm-core, ngm-core-debug, ngm-debug, ngm-log, ngm-utils, ngm-utils-debug, nm, objcopy, objdump, oclTool, ranlib, readelf, size, slamdunk, splash, strings, strip, varscan, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, pandoc-citeproc, shiftBed |
|
GITHUB
|
quay.io/biocontainers/slamem |
shpc-registry automated BioContainers addition for slamem |
slaMEM |
|
GITHUB
|
quay.io/biocontainers/slang |
shpc-registry automated BioContainers addition for slang |
slsh, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/slicedimage |
shpc-registry automated BioContainers addition for slicedimage |
slicedimage, imageio_download_bin, imageio_remove_bin, skivi, f2py3.7, chardetect, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config |
|
GITHUB
|
quay.io/biocontainers/slimfastq |
shpc-registry automated BioContainers addition for slimfastq |
slimfastq, slimfastq.multi |
|
GITHUB
|
quay.io/biocontainers/slimm |
shpc-registry automated BioContainers addition for slimm |
slimm, slimm_build |
|
GITHUB
|
quay.io/biocontainers/slivar |
shpc-registry automated BioContainers addition for slivar |
pslivar, slivar |
|
GITHUB
|
quay.io/biocontainers/slncky |
shpc-registry automated BioContainers addition for slncky |
alignTranscripts1.0, lastz, lastz_32, lastz_D, license.txt, liftOver, makeWebsite, slncky, slncky.v1.0, metadata_conda_debug.yaml, my_print_defaults, mysql_config, perror, f2py2, f2py2.7, build_env_setup.sh, conda_build.sh, annotateBed, bamToBed |
|
GITHUB
|
quay.io/biocontainers/sloika |
shpc-registry automated BioContainers addition for sloika |
basecall_network.py, chunkify.py, dump_json.py, extract_reference.py, theano-test, train_network.py, validate_network.py, verify_network.py, createfontdatachunk.py, enhancer.py, explode.py, gifmaker.py, painter.py, player.py, thresholder.py, viewer.py, pilconvert.py, pildriver.py |
|
GITHUB
|
quay.io/biocontainers/slow5curl |
singularity registry hpc automated addition for slow5curl |
slow5curl |
|
GITHUB
|
quay.io/biocontainers/slow5tools |
shpc-registry automated BioContainers addition for slow5tools |
slow5tools, mirror_server, mirror_server_stop, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy |
|
GITHUB
|
quay.io/biocontainers/smaca |
shpc-registry automated BioContainers addition for smaca |
smaca, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/smafa |
shpc-registry automated BioContainers addition for smafa |
smafa |
|
GITHUB
|
quay.io/biocontainers/smallgenomeutilities |
shpc-registry automated BioContainers addition for smallgenomeutilities |
aln2basecnt, compute_mds, convert_qr, convert_reference, coverage_stats, extract_consensus, extract_coverage_intervals, extract_sam, extract_seq, frameshift_deletions_checks, gather_coverage, mapper, min_coverage, minority_freq, pair_sequences, predict_num_reads, pysamstats, remove_gaps_msa, coverage, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py |
|
GITHUB
|
quay.io/biocontainers/smalt |
shpc-registry automated BioContainers addition for smalt |
basqcol, fetchseq, mixreads, readstats, simqual, simread, smalt, splitmates, splitreads, trunkreads |
|
GITHUB
|
quay.io/biocontainers/smartdenovo |
shpc-registry automated BioContainers addition for smartdenovo |
pairaln, smartdenovo.pl, wtclp, wtcns, wtcyc, wtext, wtgbo, wtlay, wtmer, wtmsa, wtobt, wtpre, wtzmo, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/smartmap |
shpc-registry automated BioContainers addition for smartmap |
SmartMap, SmartMapPrep, SmartMapRNAPrep, extract_exons.py, extract_splice_sites.py, hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, fasta-sanitize.pl |
|
GITHUB
|
quay.io/biocontainers/smashpp |
shpc-registry automated BioContainers addition for smashpp |
exclude_N, smashpp, smashpp-inv-rep |
|
GITHUB
|
quay.io/biocontainers/smcounter2 |
shpc-registry automated BioContainers addition for smcounter2 |
smCounter2, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py, rst2xetex.py |
|
GITHUB
|
quay.io/biocontainers/smeg |
shpc-registry automated BioContainers addition for smeg |
Mauve, MauveCM, addUnalignedIntervals, alignmentProjector, backbone_global_to_local, bbAnalyze, bbFilter, coordinateTranslate, createBackboneMFA, create_pan_genome, create_pan_genome_plots.R, envpath, extractBCITrees, extract_proteome_from_gff, getAlignmentWindows, getOrthologList, iterative_cdhit, makeBadgerMatrix, mauveAligner, mauveStatic, mauveToXMFA, mfa2xmfa, pan_genome_assembly_statistics, pan_genome_core_alignment, pan_genome_post_analysis, pan_genome_reorder_spreadsheet, parallel_all_against_all_blastp, progressiveMauve, progressiveMauveStatic, projectAndStrip, prokka-make_tarball, protein_alignment_from_nucleotides, query_pan_genome, randomGeneSample, repeatoire, roary, roary-create_pan_genome_plots.R, roary-pan_genome_reorder_spreadsheet, roary-query_pan_genome, scoreAlignment, smeg, stripGapColumns, stripSubsetLCBs, toGrimmFormat, toMultiFastA, toRawSequence, transfer_annotation_to_groups, uniqueMerCount, uniquifyTrees, xmfa2maf, yapp, prank, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray |
|
GITHUB
|
quay.io/biocontainers/smetana |
singularity registry hpc automated addition for smetana |
smetana, isympy, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, brotli, normalizer, python3.1 |
|
GITHUB
|
quay.io/biocontainers/smhasher |
shpc-registry automated BioContainers addition for smhasher |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/smina |
shpc-registry automated BioContainers addition for smina |
smina |
|
GITHUB
|
quay.io/biocontainers/smncopynumbercaller |
singularity registry hpc automated addition for smncopynumbercaller |
COPYRIGHT.txt, LICENSE.txt, requirements.txt, smn_caller.py, smn_charts.py, metadata_conda_debug.yaml, build_env_setup.sh, conda_build.sh, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
|
GITHUB
|
quay.io/biocontainers/smof |
shpc-registry automated BioContainers addition for smof |
smof, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/smoothxg |
shpc-registry automated BioContainers addition for smoothxg |
smoothxg |
|
GITHUB
|
quay.io/biocontainers/smoove |
shpc-registry automated BioContainers addition for smoove |
cnvanator_to_bedpes.py, create_coordinates, duphold, extractSplitReads_BwaMem, gsort, ldc-build-runtime, ldc-profdata, ldc-prune-cache, ldc2, ldmd2, lib_stats.R, lumpy, lumpy_filter, lumpyexpress, mosdepth, samblaster, scriptlive, smoove, sv_classifier.py, svtools, svtyper, svtyper-sso, update_info.py, vcf_allele_freq.py, vcf_group_multiline.py, vcf_modify_header.py, vcf_paste.py, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject |
|
GITHUB
|
quay.io/biocontainers/smudgeplot |
shpc-registry automated BioContainers addition for smudgeplot |
smudgeplot.py, smudgeplot_plot.R, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/smudgeplot_rn |
shpc-registry automated BioContainers addition for smudgeplot_rn |
smudgeplot.py, smudgeplot_plot.R, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/snakeatac_env |
singularity registry hpc automated addition for snakeatac_env |
SnpSift, TOBIAS, bigwigAverage, bwa-mem2, bwa-mem2.avx, bwa-mem2.avx2, bwa-mem2.avx512bw, bwa-mem2.sse41, bwa-mem2.sse42, cluster_sites_by_overlap.py, detectionCall, exactSNP, featureCounts, filter_important_factors.py, flattenGTF, genRandomReads, macs3, moods-dna.py, pdfcombine, propmapped, qualityScores, removeDup, repair, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex, rst2xml, subindel, subjunc, sublong, subread-align, subread-buildindex, subread-fullscan, svist4get, svist4get_copier, txUnique, validate-docstrings, alignmentSieve, bamCompare, bamCoverage, bamPEFragmentSize, bigwigCompare, computeGCBias, computeMatrix, computeMatrixOperations, correctGCBias, deeptools, eido, estimateReadFiltering, estimateScaleFactor, multiBamSummary, multiBigwigSummary, plotCorrelation, plotCoverage, plotEnrichment, plotFingerprint, plotHeatmap, plotPCA, plotProfile, kaleido, mathjax-path, qconvex |
|
GITHUB
|
quay.io/biocontainers/snakedeploy |
shpc-registry automated BioContainers addition for snakedeploy |
snakedeploy, x86_64-conda_cos7-linux-gnu-ld, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/snakefmt |
shpc-registry automated BioContainers addition for snakefmt |
black, blackd, snakefmt, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/snakelines |
shpc-registry automated BioContainers addition for snakelines |
cairosvg, snakelines, weasyprint, multiqc, docutils, cmark, pulptest, cbc, clp, coloredlogs, humanfriendly, snakemake, snakemake-bash-completion |
|
GITHUB
|
quay.io/biocontainers/snakemake-executor-plugin-azure-batch |
singularity registry hpc automated addition for snakemake-executor-plugin-azure-batch |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, normalizer |
|
GITHUB
|
quay.io/biocontainers/snakemake-executor-plugin-cluster-generic |
singularity registry hpc automated addition for snakemake-executor-plugin-cluster-generic |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/snakemake-executor-plugin-cluster-sync |
singularity registry hpc automated addition for snakemake-executor-plugin-cluster-sync |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/snakemake-executor-plugin-drmaa |
singularity registry hpc automated addition for snakemake-executor-plugin-drmaa |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/snakemake-executor-plugin-googlebatch |
singularity registry hpc automated addition for snakemake-executor-plugin-googlebatch |
protoc-24.4.0, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, protoc, normalizer |
|
GITHUB
|
quay.io/biocontainers/snakemake-executor-plugin-kubernetes |
singularity registry hpc automated addition for snakemake-executor-plugin-kubernetes |
wsdump, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, normalizer |
|
GITHUB
|
quay.io/biocontainers/snakemake-executor-plugin-lsf-jobstep |
singularity registry hpc automated addition for snakemake-executor-plugin-lsf-jobstep |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/snakemake-executor-plugin-lsf |
singularity registry hpc automated addition for snakemake-executor-plugin-lsf |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/snakemake-executor-plugin-slurm-jobstep |
singularity registry hpc automated addition for snakemake-executor-plugin-slurm-jobstep |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/snakemake-executor-plugin-tes |
singularity registry hpc automated addition for snakemake-executor-plugin-tes |
futurize, pasteurize, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, normalizer |
|
GITHUB
|
quay.io/biocontainers/snakemake-interface-common |
singularity registry hpc automated addition for snakemake-interface-common |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/snakemake-interface-executor-plugins |
singularity registry hpc automated addition for snakemake-interface-executor-plugins |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/snakemake-interface-report-plugins |
singularity registry hpc automated addition for snakemake-interface-report-plugins |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/snakemake-interface-storage-plugins |
singularity registry hpc automated addition for snakemake-interface-storage-plugins |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/snakemake-minimal |
shpc-registry automated BioContainers addition for snakemake-minimal |
snakemake, snakemake-bash-completion, rst2html4.py, jsonschema, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py |
|
GITHUB
|
quay.io/biocontainers/snakemake-storage-plugin-azure |
singularity registry hpc automated addition for snakemake-storage-plugin-azure |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, normalizer |
|
GITHUB
|
quay.io/biocontainers/snakemake-storage-plugin-fs |
singularity registry hpc automated addition for snakemake-storage-plugin-fs |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/snakemake-storage-plugin-ftp |
singularity registry hpc automated addition for snakemake-storage-plugin-ftp |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/snakemake-storage-plugin-gcs |
singularity registry hpc automated addition for snakemake-storage-plugin-gcs |
protoc-24.4.0, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, protoc, normalizer |
|
GITHUB
|
quay.io/biocontainers/snakemake-storage-plugin-http |
singularity registry hpc automated addition for snakemake-storage-plugin-http |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, normalizer |
|
GITHUB
|
quay.io/biocontainers/snakemake-storage-plugin-irods |
singularity registry hpc automated addition for snakemake-storage-plugin-irods |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/snakemake-storage-plugin-s3 |
singularity registry hpc automated addition for snakemake-storage-plugin-s3 |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, jp.py |
|
GITHUB
|
quay.io/biocontainers/snakemake-storage-plugin-sftp |
singularity registry hpc automated addition for snakemake-storage-plugin-sftp |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/snakemake-storage-plugin-zenodo |
singularity registry hpc automated addition for snakemake-storage-plugin-zenodo |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, normalizer |
|
GITHUB
|
quay.io/biocontainers/snakemake-wrapper-utils |
shpc-registry automated BioContainers addition for snakemake-wrapper-utils |
2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/snakemake |
shpc-registry automated BioContainers addition for snakemake |
|
|
GITHUB
|
quay.io/biocontainers/snakeobjects |
shpc-registry automated BioContainers addition for snakeobjects |
sobjects, plac_runner.py, yte, pulptest, cbc, clp, snakemake, snakemake-bash-completion, tabulate, jupyter-trust, jupyter |
|
GITHUB
|
quay.io/biocontainers/snakeparse |
shpc-registry automated BioContainers addition for snakeparse |
pyhocon, snakeparse, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/snakesv |
shpc-registry automated BioContainers addition for snakesv |
01_prepare_short_read.sh, 02_download_gtf_annotation.sh, 03_prepare_long_read.sh, 04_download_custom_annotation.sh, bsdcat, bsdcpio, bsdtar, conda2solv, dumpsolv, installcheck, mamba, mamba-package, mergesolv, repo2solv, snakeSV, testsolv, stone, conda-env, cph, plac_runner.py, yte, pulptest, gff2gff.py, cbc, clp, snakemake |
|
GITHUB
|
quay.io/biocontainers/snaketool-utils |
singularity registry hpc automated addition for snaketool-utils |
2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/snap-aligner |
shpc-registry automated BioContainers addition for snap-aligner |
snap-aligner |
|
GITHUB
|
quay.io/biocontainers/snap |
shpc-registry automated BioContainers addition for snap |
|
|
GITHUB
|
quay.io/biocontainers/snapatac2 |
singularity registry hpc automated addition for snapatac2 |
h5tools_test_utils, h5fuse.sh, scanpy, hwloc-gather-cpuid, h5delete, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, numba, natsort, tjbench, f2py3.8, tqdm, fonttools, pyftmerge, pyftsubset |
|
GITHUB
|
quay.io/biocontainers/snapgene-reader |
singularity registry hpc automated addition for snapgene-reader |
html2text, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/snaptools |
shpc-registry automated BioContainers addition for snaptools |
community, snaptools, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, futurize, pasteurize |
|
GITHUB
|
quay.io/biocontainers/sneakernet-qc |
singularity registry hpc automated addition for sneakernet-qc |
SalmID.py, SneakerNet.checkdeps.pl, SneakerNet.ionTorrent.ro.pl, SneakerNet.pl, SneakerNet.roRun.pl, SneakerNetPlugins.pl, addReadMetrics.pl, assembleAll.pl, baseBalance.pl, buildKraken1.sh, buildKraken2.sh, buildTaxonomy.sh, downloadKalamari.pl, downloadKalamari.sh, emailWhoever.pl, filterTaxonomy.sh, generate_sepia_reference.py, getExactTaxonomy.pl, gfa_connector, kmercounter, lighter, mlst, mlst-ST_mini_genomes, mlst-consistency_checker, mlst-download_pub_mlst, mlst-make_blast_db, mlst-show_seqs, mobsuiteRepresentativeFasta.pl, pl2bat.pl, read_length_quality_stats_fastq.py, saute, saute_prot, shovill, skesa, sn_SalmID.pl, sn_assembleAll_reference.pl, sn_assemblyWorkflow_init.pl, sn_cleanup.pl, sn_createSampleSheet.pl, sn_crypto_assembleAll.pl, sn_crypto_gp60.pl, sn_detectContamination-kraken.pl, sn_detectContamination-mlst.pl, sn_detectContamination.pl, sn_genotype.pl, sn_genotype_escherichia.pl, sn_helloWorld.pl, sn_helloWorld.py, sn_helloWorld.sh, sn_immediateStatus.pl, sn_iontorrent_assembleAll.pl, sn_kraken-metagenomics.pl, sn_kraken.pl, sn_mlst-wg.pl, sn_mlst.pl, sn_parseSampleSheet.pl, sn_passfail.pl, sn_report.pl, sn_sarscov2_assembleAll.pl, sn_saveFailedGenomes.pl, sn_staramr.pl, transferFilesToRemoteComputers.pl, validateTaxonomy.pl, icarus.py, kaleido, mathjax-path, metaquast, metaquast.py, quast, quast-download-busco, quast-download-gridss, quast-download-silva, quast-lg.py, quast.py, kraken, kraken-build, kraken-filter, kraken-mpa-report, kraken-report, kraken-translate, ktClassifyHits, ktImportHits, flash, glimmerhmm, glimmhmm.pl, trainGlimmerHMM, TMalign, ktClassifyBLAST |
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GITHUB
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quay.io/biocontainers/sneep |
singularity registry hpc automated addition for sneep |
HandleInOutput, HandleInOutput.cpp, HandleInOutput.hpp, Makefile.bak, Matrix, Matrix_new.cpp, Matrix_new.hpp, callBashCommand, callBashCommand.cpp, callBashCommand.hpp, differentialBindingAffinity_multipleSNPs, differentialBindingAffinity_multipleSNPs.cpp, estimateScalePerMotif.sh, findZerosEachMotif.py, histogram.R, pvalue, pvalue_copy.cpp, pvalue_copy.hpp, randomRsIds_2.0, sampleRandomRsIDs2.cpp, sampleRandomRsIDs2.hpp, seperatePFMs.py, seperatePFMsAndCheckActivity.py, Makefile, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap, groupBy, intersectBed, linksBed, mapBed, maskFastaFromBed, mergeBed |
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GITHUB
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quay.io/biocontainers/sniffles |
shpc-registry automated BioContainers addition for sniffles |
sniffles, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/snikt |
shpc-registry automated BioContainers addition for snikt |
snikt.R, seqtk, pandoc |
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GITHUB
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quay.io/biocontainers/snipe |
singularity registry hpc automated addition for snipe |
pathos_connect, portpicker, pox, ppserver, snipe, sourmash, get_gprof, pyfastx, screed, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, get_objgraph, undill, futurize, pasteurize, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tqdm, fonttools, pyftmerge, pyftsubset, ttx, brotli |
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GITHUB
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quay.io/biocontainers/snipit |
shpc-registry automated BioContainers addition for snipit |
snipit, snp_functions.py, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10 |
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GITHUB
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quay.io/biocontainers/snippy |
shpc-registry automated BioContainers addition for snippy |
sam_add_rg.pl, snippy, snippy-clean_full_aln, snippy-core, snippy-multi, snippy-vcf_extract_subs, snippy-vcf_report, snippy-vcf_to_tab, split_ref_by_bai_datasize.py, update_version.sh, snp-sites, vt, tabix++, samclip, any2fasta, bc, dc, snpEff, bamleftalign, coverage_to_regions.py |
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GITHUB
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quay.io/biocontainers/snk-cli |
singularity registry hpc automated addition for snk-cli |
art, typer, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex, rst2xml, markdown-it, yte, plac_runner.py, docutils, pulptest, cbc, clp, snakemake, humanfriendly, tabulate, jupyter-trust, jupyter, jupyter-migrate, jupyter-troubleshoot, jsonschema |
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GITHUB
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quay.io/biocontainers/snk |
singularity registry hpc automated addition for snk |
art, snk, typer, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex, rst2xml, scalar, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, markdown-it, yte, plac_runner.py, docutils, pulptest, cbc, clp |
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GITHUB
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quay.io/biocontainers/snmf |
shpc-registry automated BioContainers addition for snmf |
ancestrymap2geno, createDataSet, crossEntropy, geno2lfmm, lfmm2geno, ped2geno, sNMF, vcf2geno, bp_pairwise_kaks.pl, bp_search2BSML.pl, bp_aacomp.pl, bp_biofetch_genbank_proxy.pl, bp_bioflat_index.pl, bp_biogetseq.pl, bp_blast2tree.pl, bp_bulk_load_gff.pl, bp_chaos_plot.pl, bp_classify_hits_kingdom.pl |
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GITHUB
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quay.io/biocontainers/snns |
shpc-registry automated BioContainers addition for snns |
analyze, batchman, bison, convert2snns, feedback-gennet, ff_bignet, flex, flex++, isnns, linknets, m4, mkhead, mkout, mkpat, netlearn, netperf, pat_sel, pat_sel_simple, snns, snns2c, snnsbat, td_bignet, xgui, yacc |
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GITHUB
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quay.io/biocontainers/snoscan |
shpc-registry automated BioContainers addition for snoscan |
fasta2gsi.pl, genbank2gsi.pl, genpept2gsi.pl, pir2gsi.pl, snoscan, snoscanA, snoscanH, snoscanY, sort-snos, sort-snos.pl, swiss2gsi.pl, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/snostrip |
shpc-registry automated BioContainers addition for snostrip |
RNAmultifold, snoStrip.pl, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb, impala, makemat |
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GITHUB
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quay.io/biocontainers/snp-dists |
shpc-registry automated BioContainers addition for snp-dists |
snp-dists |
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GITHUB
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quay.io/biocontainers/snp-mutator |
shpc-registry automated BioContainers addition for snp-mutator |
snpmutator, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/snp-pileup |
shpc-registry automated BioContainers addition for snp-pileup |
snp-pileup |
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GITHUB
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quay.io/biocontainers/snp-pipeline |
shpc-registry automated BioContainers addition for snp-pipeline |
alignSampleToReference.sh, calculate_snp_distances.py, call_consensus.py, cfsan_snp_pipeline, collectSampleMetrics.sh, combineSampleMetrics.sh, copy_snppipeline_data.py, create_snp_list.py, create_snp_matrix.py, create_snp_reference_seq.py, mergeVcf.sh, prepReference.sh, prepSamples.sh, qarrayrun, run_snp_pipeline.sh, snp_filter.py, vcf_sample_filter.py, vcf_filter.py, vcf_melt, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/snp-sites |
shpc-registry automated BioContainers addition for snp-sites |
snp-sites |
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GITHUB
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quay.io/biocontainers/snpeff |
shpc-registry automated BioContainers addition for snpeff |
snpEff, cups-config, ippeveprinter, ipptool, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink |
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GITHUB
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quay.io/biocontainers/snpgenie |
shpc-registry automated BioContainers addition for snpgenie |
fasta2revcom.pl, gtf2revcom.pl, snpgenie.pl, snpgenie_between_group.pl, snpgenie_between_group_processor.pl, snpgenie_within_group.pl, snpgenie_within_group_processor.pl, vcf2revcom.pl, moose-outdated, package-stash-conflicts, cpanm, perl5.26.2, podselect |
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GITHUB
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quay.io/biocontainers/snpick |
singularity registry hpc automated addition for snpick |
snpick |
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GITHUB
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quay.io/biocontainers/snpiphy |
shpc-registry automated BioContainers addition for snpiphy |
gubbins, run_gubbins.py, snippy, snippy-clean_full_aln, snippy-core, snippy-multi, snippy-vcf_extract_subs, snippy-vcf_report, snippy-vcf_to_tab, snpiphy, snpiphy_generate_input_list, vcfnormalizesvs, vcfnull2ref, vcfunphase, snp-sites, vt, plotBfst.R, plotHapLrt.R, plotHaplotypes.R, plotPfst.R, plotSmoothed.R, plotWCfst.R, plotXPEHH.R, plot_roc.r |
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GITHUB
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quay.io/biocontainers/snpomatic |
shpc-registry automated BioContainers addition for snpomatic |
findknownsnps |
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GITHUB
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quay.io/biocontainers/snpsift |
shpc-registry automated BioContainers addition for snpsift |
SnpSift, cups-config, ippeveprinter, ipptool, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink |
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GITHUB
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quay.io/biocontainers/snpsplit |
shpc-registry automated BioContainers addition for snpsplit |
SNPsplit, SNPsplit_genome_preparation, tag2sort, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa |
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GITHUB
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quay.io/biocontainers/snver |
shpc-registry automated BioContainers addition for snver |
snver, snver-pool, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/snvphyl-tools |
shpc-registry automated BioContainers addition for snvphyl-tools |
consolidate_vcfs.pl, core-only.pl, extract_snvs_metaalign.pl, filter-positions.pl, filter-stats.pl, filterVcf.pl, filter_unique_basepairs.pl, find-positions-used.pl, find-repeats.pl, positions2phyloviz.pl, positions2snv_alignment.pl, positions2snv_invariant_alignment.pl, rearrange_snv_matrix.pl, ref_stats.pl, reporter.pl, snv_matrix.pl, tab-to-vcf, tsvToVcf.pl, vcf-haplotypes, vcf2snv_alignment.pl, vcftools, verify_excess_coverage.pl, verify_low_depth.pl, verify_mapping_quality.pl, fill-aa, fill-an-ac, fill-fs, fill-ref-md5, vcf-annotate, vcf-compare, vcf-concat, vcf-consensus, vcf-contrast, vcf-convert |
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GITHUB
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quay.io/biocontainers/soapaligner |
shpc-registry automated BioContainers addition for soapaligner |
2bwt-builder, soap |
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GITHUB
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quay.io/biocontainers/soapcoverage |
shpc-registry automated BioContainers addition for soapcoverage |
soap.coverage |
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GITHUB
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quay.io/biocontainers/soapdenovo-trans |
shpc-registry automated BioContainers addition for soapdenovo-trans |
SOAPdenovo-Trans-127mer, SOAPdenovo-Trans-31mer |
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GITHUB
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quay.io/biocontainers/soapdenovo2-errorcorrection |
shpc-registry automated BioContainers addition for soapdenovo2-errorcorrection |
ErrorCorrection |
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GITHUB
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quay.io/biocontainers/soapdenovo2-gapcloser |
shpc-registry automated BioContainers addition for soapdenovo2-gapcloser |
GapCloser |
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GITHUB
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quay.io/biocontainers/soapdenovo2-prepare |
shpc-registry automated BioContainers addition for soapdenovo2-prepare |
finalFusion |
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GITHUB
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quay.io/biocontainers/soapdenovo2 |
shpc-registry automated BioContainers addition for soapdenovo2 |
|
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GITHUB
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quay.io/biocontainers/soapec |
shpc-registry automated BioContainers addition for soapec |
Corrector_AR, Corrector_HA, KmerFreq_AR, KmerFreq_HA |
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GITHUB
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quay.io/biocontainers/soapsplice |
shpc-registry automated BioContainers addition for soapsplice |
2bwt-builder, soapsplice |
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GITHUB
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quay.io/biocontainers/socksipy-branch |
shpc-registry automated BioContainers addition for socksipy-branch |
2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/socru |
shpc-registry automated BioContainers addition for socru |
socru, socru_create, socru_rebuild_profile, socru_shrink_database, socru_species, socru_update_profile, barrnap, CA.pm, cacert.pem, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras, pm-collect |
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GITHUB
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quay.io/biocontainers/soda-gallery |
shpc-registry automated BioContainers addition for soda-gallery |
dumppdf.py, pdf2txt.py, soda, chardetect, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/sodar-cli |
shpc-registry automated BioContainers addition for sodar-cli |
sodar-cli, tabulate, tqdm, chardetect, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/solexaqa |
shpc-registry automated BioContainers addition for solexaqa |
SolexaQA++ |
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GITHUB
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quay.io/biocontainers/solote |
singularity registry hpc automated addition for solote |
SoloTE_RepeatMasker_to_BED.py, SoloTE_pipeline.py, annotateBAM.py, hb-info, tjbench, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap, groupBy, intersectBed, linksBed, mapBed, maskFastaFromBed |
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GITHUB
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quay.io/biocontainers/solvebio |
shpc-registry automated BioContainers addition for solvebio |
solvebio, chardetect, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/somalier |
shpc-registry automated BioContainers addition for somalier |
somalier, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/somatic-sniper |
shpc-registry automated BioContainers addition for somatic-sniper |
bam-somaticsniper |
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GITHUB
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quay.io/biocontainers/somaticseq |
shpc-registry automated BioContainers addition for somaticseq |
MuSE, SSeq_tsv2vcf.py, ada_model_builder_ntChange.R, ada_model_predictor.R, concat.py, linguistic_sequence_complexity.py, lociCounterWithLabels.py, lofreq, lofreq2_call_pparallel.py, lofreq2_indel_ovlp.py, lofreq2_somatic.py, lofreq2_vcfplot.py, makeAlignmentScripts.py, makeSomaticScripts.py, paired_end_bam2fastq.py, remove_callers_from_somaticseq_tsv.py, run_somaticseq.py, run_workflows.py, scalpel-discovery, scalpel-export, single_sample_vcf2tsv.py, somatic_vcf2tsv.py, somatic_xgboost.py, somaticseq_parallel.py, splitVcf.py, split_Bed_into_equal_regions.py, tally_variants_from_multiple_vcfs.py, testsomatic.R, teststrandbias.R, var2vcf_paired.pl, var2vcf_valid.pl, vardict, vardict.pl, vardict2mut.pl, variant_annotation.py, varscan, vcfsorter.pl, gatk, xgboost, gff2gff.py, bamtools, cups-config, ippeveprinter, ipptool, guess-ploidy.py, plot-roh.py, run-roh.pl |
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GITHUB
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quay.io/biocontainers/sompy |
shpc-registry automated BioContainers addition for sompy |
g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, qhelpconverter, f2py2, f2py2.7, gtk-builder-convert, gtk-demo |
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GITHUB
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quay.io/biocontainers/sonicparanoid |
shpc-registry automated BioContainers addition for sonicparanoid |
filetype, sonic-debug-infer-ortho-table, sonicparanoid, sonicparanoid-extract, sonicparanoid-get-test-data, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray, mcxassemble |
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GITHUB
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quay.io/biocontainers/sonlib |
shpc-registry automated BioContainers addition for sonlib |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/sopa |
singularity registry hpc automated addition for sopa |
bsdunzip, checksum-profile, datashader, elastishadow, flake8, gdal_footprint, minigzip, minizip, ome_zarr, protoc-27.5.0, pycodestyle, pyct, pyflakes, pyproj, sopa, sozip, typer, xrspatial, rav1e, torch_shm_manager, SvtAv1EncApp, dav1d, tiff2fsspec, tiffcomment, dask, aomdec, aomenc, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, imageio_download_bin, imageio_remove_bin, skivi, gdal_create, gdal_viewshed, gdalmdiminfo |
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GITHUB
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quay.io/biocontainers/sorted_nearest |
shpc-registry automated BioContainers addition for sorted_nearest |
f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/sortmerna |
shpc-registry automated BioContainers addition for sortmerna |
sortmerna |
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GITHUB
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quay.io/biocontainers/sourcepredict |
singularity registry hpc automated addition for sourcepredict |
h5delete, sourcepredict, mpg123, mpg123-id3dump, mpg123-strip, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, libgcrypt-config, mpicalc, yat2m, lame, hwloc-gather-cpuid, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, attr, balsam, getfattr, hwloc-annotate, hwloc-bind, hwloc-calc |
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GITHUB
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quay.io/biocontainers/sourcetracker |
shpc-registry automated BioContainers addition for sourcetracker |
|
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GITHUB
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quay.io/biocontainers/sourmash |
shpc-registry automated BioContainers addition for sourmash |
abundance-dist-single.py, abundance-dist.py, annotate-partitions.py, count-median.py, do-partition.py, extract-long-sequences.py, extract-paired-reads.py, extract-partitions.py, fastq-to-fasta.py, filter-abund-single.py, filter-abund.py, filter-stoptags.py, find-knots.py, interleave-reads.py, load-graph.py, load-into-counting.py, make-initial-stoptags.py, merge-partitions.py, normalize-by-median.py, partition-graph.py, readstats.py, sample-reads-randomly.py, sourmash, split-paired-reads.py, trim-low-abund.py, unique-kmers.py, screed, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, qhelpconverter |
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GITHUB
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quay.io/biocontainers/spacepharer |
shpc-registry automated BioContainers addition for spacepharer |
spacepharer, gawk-5.1.0, awk, gawk, idn2, wget, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/spades |
shpc-registry automated BioContainers addition for spades |
2to3-3.5, bwa-spades, cds-mapping-stats, cds-subgraphs, coronaspades.py, corrector, dipspades.py, dipspades, hammer, idle3.5, ionhammer, mag-improve, metaplasmidspades.py, metaspades.py, metaviralspades.py, plasmidspades.py, pydoc3.5, python3.5-config, python3.5, python3.5m-config, python3.5m, pyvenv-3.5, pyvenv, rnaspades.py, rnaviralspades.py, scaffold_correction, spades-bwa, spades-convert-bin-to-fasta, spades-core, spades-corrector-core, spades-gbuilder, spades-gmapper, spades-gsimplifier, spades-hammer, spades-ionhammer, spades-kmer-estimating, spades-kmercount, spades-read-filter, spades-truseq-scfcorrection, spades.py, spades, spades_init.py, spaligner, truspades.py |
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GITHUB
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quay.io/biocontainers/spagrn |
singularity registry hpc automated addition for spagrn |
dask, elastipubsub5, io_demo, mqtt5_app, mqtt5_canary, mqtt5canary, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, ucx_info, ucx_perftest, ucx_read_profile, h5delete, elasticurl, elasticurl_cpp, elastipubsub, csv-import, orc-memory, orc-scan, timezone-dump, sha256_profile, hwloc-gather-cpuid, orc-contents, orc-metadata, orc-statistics, scanpy, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps |
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GITHUB
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quay.io/biocontainers/spaln |
shpc-registry automated BioContainers addition for spaln |
catchr.pl, makblk.pl, makdbs, makeidx.pl, makmdm, sortgrcd, spaln, spspaln.pl, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/spapros |
singularity registry hpc automated addition for spapros |
bandit, bandit-baseline, bandit-config-generator, debugpy, nox, spapros, tox, tox-to-nox, virtualenv, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex, rst2xml, pandoc-lua, pbr, jupyter-dejavu, jupyter-execute, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, h5tools_test_utils |
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GITHUB
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quay.io/biocontainers/sparcc |
shpc-registry automated BioContainers addition for sparcc |
Lineages.py, MakeBootstraps.py, PseudoPvals.py, SampleDist.py, SparCC.py, __init__.py, analysis_methods.py, compositional_methods.py, core_methods.py, io_methods.py, conv-template, from-template, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
|
quay.io/biocontainers/sparqlwrapper |
shpc-registry automated BioContainers addition for sparqlwrapper |
csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5 |
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GITHUB
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quay.io/biocontainers/sparse-neighbors-search |
shpc-registry automated BioContainers addition for sparse-neighbors-search |
numba, pycc, tqdm, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
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GITHUB
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quay.io/biocontainers/sparsehash |
shpc-registry automated BioContainers addition for sparsehash |
|
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GITHUB
|
quay.io/biocontainers/spatialleiden |
singularity registry hpc automated addition for spatialleiden |
qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, h5tools_test_utils, igraph, scanpy, h5fuse.sh, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, h5delete |
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GITHUB
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quay.io/biocontainers/spatyper |
shpc-registry automated BioContainers addition for spatyper |
download-spatypes.sh, spaTyper, sparepeats.fasta, spatypes.txt, idn2, wget, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/spec2vec |
singularity registry hpc automated addition for spec2vec |
tjbench, numba, pycc, fonttools, pyftmerge, pyftsubset, ttx, normalizer, tqdm, brotli, xslt-config, xsltproc, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1, jpgicc, linkicc, psicc, tificc |
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GITHUB
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quay.io/biocontainers/spectacle |
shpc-registry automated BioContainers addition for spectacle |
Spectacle.sh, Spectacle_python.py, download_spectacle_data.sh, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, f2py3.9 |
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GITHUB
|
quay.io/biocontainers/spectra-cluster-cli |
shpc-registry automated BioContainers addition for spectra-cluster-cli |
spectra-cluster-cli, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/spectral_hk |
shpc-registry automated BioContainers addition for spectral_hk |
spectral_hk |
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GITHUB
|
quay.io/biocontainers/spectrassembler |
shpc-registry automated BioContainers addition for spectrassembler |
gen_cons_from_poa.py, get_position_from_sam.py, make_pscores.pl, minimap, minimap-lite, poa, spectral_layout_from_minimap.py, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb, impala, makemat |
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GITHUB
|
quay.io/biocontainers/spectrum_utils |
shpc-registry automated BioContainers addition for spectrum_utils |
x86_64-conda_cos7-linux-gnu-ld, xml2-config.bak, numba, pycc, jsonschema, fonttools, pyftmerge, pyftsubset, ttx, brotli |
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GITHUB
|
quay.io/biocontainers/sphae |
singularity registry hpc automated addition for sphae |
jsondiff, jsonpatch, jsonpointer, sphae, mamba-package, conda2solv, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, bsdcat, bsdcpio, bsdtar, conda-env, cph, yte, plac_runner.py, docutils, pulptest, cbc, clp, humanfriendly, snakemake, snakemake-bash-completion, tabulate, jupyter-trust, jupyter |
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GITHUB
|
quay.io/biocontainers/sphinx-argparse |
shpc-registry automated BioContainers addition for sphinx-argparse |
sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, easy_install-3.6, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py |
|
GITHUB
|
quay.io/biocontainers/sphinxcontrib-programoutput |
shpc-registry automated BioContainers addition for sphinxcontrib-programoutput |
sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, easy_install-3.6, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py |
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GITHUB
|
quay.io/biocontainers/spine |
shpc-registry automated BioContainers addition for spine |
nucmer_backbone.pl, nucmer_multi.pl, spine.pl, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer, mummerplot |
|
GITHUB
|
quay.io/biocontainers/splash |
singularity registry hpc automated addition for splash |
bkc, bkc_dump, build_lookup_table.py, compactors, dsv_manip, fafq_filter, gap_shortener, idle3.13, lookup_table, pydoc3.13, python3.13, python3.13-config, read_selector, satc, satc_dump, satc_filter, satc_merge, satc_to_fasta, satc_undump, sig_anch, splash, supervised_test.R, tsv_to_fasta, kmc, kmc_tools, metadata_conda_debug.yaml, build_env_setup.sh, conda_build.sh |
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GITHUB
|
quay.io/biocontainers/spliceai-wrapper |
shpc-registry automated BioContainers addition for spliceai-wrapper |
spliceai, spliceai-wrapper, theano-cache, theano-nose, freeze_graph, mako-render, tflite_convert, saved_model_cli, toco, toco_from_protos, tensorboard, markdown_py |
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GITHUB
|
quay.io/biocontainers/spliceai |
shpc-registry automated BioContainers addition for spliceai |
|
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GITHUB
|
quay.io/biocontainers/spliced_bam2gff |
shpc-registry automated BioContainers addition for spliced_bam2gff |
spliced_bam2gff |
|
GITHUB
|
quay.io/biocontainers/splicemap |
shpc-registry automated BioContainers addition for splicemap |
SpliceMap, amalgamateSAM, colorJunction, countsam, findNovelJunctions, neighborFilter, nnrFilter, precipitateSAM, randomJunctionFilter, runSpliceMap, sortsam, statSpliceMap, subseq, uniqueJunctionFilter, wig2barwig, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect, 2to3-3.9 |
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GITHUB
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quay.io/biocontainers/splitcode |
singularity registry hpc automated addition for splitcode |
splitcode |
|
GITHUB
|
quay.io/biocontainers/splitmem |
shpc-registry automated BioContainers addition for splitmem |
splitMEM |
|
GITHUB
|
quay.io/biocontainers/splitp |
singularity registry hpc automated addition for splitp |
splitp |
|
GITHUB
|
quay.io/biocontainers/splitubam |
singularity registry hpc automated addition for splitubam |
splitubam |
|
GITHUB
|
quay.io/biocontainers/spoa |
shpc-registry automated BioContainers addition for spoa |
spoa |
|
GITHUB
|
quay.io/biocontainers/spotyping |
shpc-registry automated BioContainers addition for spotyping |
|
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GITHUB
|
quay.io/biocontainers/spotyping3 |
shpc-registry automated BioContainers addition for spotyping3 |
SpoTyping.py, SpoTyping_plot.r, test_pcre, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, seedtop, run_with_lock, blast_formatter, blastdb_aliastool, blastdbcheck |
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GITHUB
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quay.io/biocontainers/sprai |
shpc-registry automated BioContainers addition for sprai |
AtacDriver.py, Catrack, DAM2fasta, DB2fasta, DB2quiva, DBdust, DBrm, DBshow, DBsplit, DBstats, ESTmapper.pl, HPCdaligner, HPCmapper, LAcat, LAcheck, LAmerge, LAshow, LAsort, LAsplit, PBcR, aalookup_unit_test, aascan_unit_test, addCNSToStore, addReadsToUnitigs, align_format_unit_test, analyzeBest, analyzePosMap, analyzeScaffolds, asmOutputFasta, asmOutputStatistics, asmToAGP.pl, atac.pl, bam2sam, bdbloader_unit_test, bfmtx2m4.pl, bl2seq_unit_test, blasr, blast_format_unit_test, blast_services_unit_test, blast_unit_test, blastdb_format_unit_test, blastdiag_unit_test, blastengine_unit_test, blastextend_unit_test, blastfilter_unit_test, blasthits_unit_test, blastinput_unit_test, blastoptions_unit_test, blastsetup_unit_test, bogart, bogus, bogusness, buildPosMap, buildRefContigs, buildUnitigs, ca2ace.pl, ca_ikki_v5.pl, caqc.pl, caqc_help.ini, cat-corrects, cat-erates, cgw, cgwDump, check_circularity.pl, check_redundancy.pl, chimChe, chimera, classifyMates, classifyMatesApply, classifyMatesPairwise, cleanAtac, cleanPolishes, clumpMaker, coalesceMatches, comparePolishes, computeCoverageStat, configureESTmapper.pl, convert-fasta-to-v2.pl, convertOverlap, convertPolishes, convertSamToCA, convertToAtac, convertToExtent, convertToPBCNS, correct-frags, correct-olaps, correctGaps, correctPacBio, ctgcns, daligner, dazcon, deduplicate, delta_unit_test, demotePosMap, depthOfPolishes, detectChimera, dfq2fq_v2.pl, dumbbell_filter.pl, dumpCloneMiddles, dumpPBRLayoutStore, dumpSingletons, erate-estimate, estimate-mer-threshold, existDB, extendClearRanges, extendClearRangesPartition, extractSequence, extractUnmapped, extract_fq.pl, extractmessages, ezez4makefile_v4.pl, ezez4qsub_vx1.pl, ezez_vx1.pl, fa2fq.pl, falcon-bench, falcon-print-routes, falcon_sense, fasta2DAM, fasta2DB, fastaToCA, fastqAnalyze, fastqSample, fastqSimulate, fastqSimulate-sort, fastqToCA, filterEST, filterESTsimple, filterMRNA, filterNULL, filterOverlap, filterPolishes, filtertest, finalTrim, fixPolishesIID, fixUnitigs, fq2fa.pl, fq2idfq.pl, fqfilt.pl, fragmentDepth, fragsInVars, frgs2clones, gapShifter, gapinfo_unit_test, gatekeeper, gatekeeperbench, gencode_singleton_unit_test, gene_info_unit_test, get_target_fasta_records.pl, get_top_20x_fa.pl, gkpStoreCreate, gkpStoreDumpFASTQ, greedyFragmentTiling, greedy_layout_to_IUM, happy-clones-span-clumps, headPolishes, heavychains, hitConverter, hspfilter_besthit_unit_test, hspfilter_culling_unit_test, hspstream_unit_test, initialTrim, kmer-mask, leaff, lengthFilter, linkhsp_unit_test, magicblast_unit_test, makeplot.pl, mapMers, mapMers-depth, mappedCoverage, markRepeatUnique, markUniqueUnique, matchExtender, merTrim, merTrimApply, mercy, mergeCounts, mergePolishes, mergeqc.pl, metagenomics_ovl_analyses, mismatchCounter, msa2pssm_unit_test, mt19937ar-test, ntlookup_unit_test, ntscan_unit_test, olap-from-seeds, optionshandle_unit_test, outputLayout, overlap, overlapInCore, overlapStats, overlapStore, overlapStoreBucketizer, overlapStoreBuild, overlapStoreIndexer, overlapStoreSorter, overlap_partition, overmerry, pacBioToCA, parseSNP, partition_fa.pl, pbdagcon, pbindex, pbindexdump, pbmerge, pbutgcns, phiblast_unit_test, pickBestPair, pickBestPolish, pickUniquePolish, plotCoverageVsIdentity, positionDB, prelimsearch_unit_test, projectFeatures, psibl2seq_unit_test, psiblast_iteration_unit_test, psiblast_unit_test, pssmcreate_unit_test, pssmenginefreqratios_unit_test, querydata_unit_test, queryinfo_unit_test, quiva2DB, realignPolishes, redoalignment_unit_test, remote_blast_unit_test, removeDuplicate, removeMateOverlap, removeRedundant, remove_fragment, replaceUIDwithName-fastq, replaceUIDwithName-posmap, reportAlignmentDifferences, resolveSurrogates, rewriteCache, rps_unit_test, runCA, runCA-dedupe, runCA-overlapStoreBuild, runCA.bak, runConcurrently.pl, run_greedy.csh, scoreblk_unit_test, seagen, search_strategy_unit_test, seatac, seqdb_unit_test, seqinfosrc_unit_test, seqsrc_unit_test, setupfactory_unit_test, sffToCA, show-corrects, sim4db, simple, simulator, sortHits, sortPolishes, splitUnitigs, split_query_unit_test, stat_unit_test, statsGenerator, subj_ranges_unit_test, summarizePolishes, terminate, terminator, test-merStream, test-seqCache, test-seqStream, testAtac, tigStore, tracearchiveToCA, traceback_unit_test, tracebacksearch_unit_test, tracedb-to-frg.pl, trimFastqByQVWindow, uidclient, uniform_search_unit_test, uniqPolishes, uniqueFilter, unitigger, upgrade-v8-to-v9, upgrade-v9-to-v10, utg2fasta, utgcns, utgcnsfix, vennPolishes, version_reference_unit_test, writedb_unit_test, meryl, test_pcre, config_data, jellyfish, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, perl5.22.0, c2ph |
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GITHUB
|
quay.io/biocontainers/spring |
shpc-registry automated BioContainers addition for spring |
spring |
|
GITHUB
|
quay.io/biocontainers/springsuite |
shpc-registry automated BioContainers addition for springsuite |
TMalign, TMscore, pulchra, spring_cross.py, spring_map.py, spring_mcc.py, spring_minz.py, spring_model.py, spring_model_all.py, CA.pm, cacert.pem, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras, pm-collect, readme.pdf |
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GITHUB
|
quay.io/biocontainers/sprinkles |
shpc-registry automated BioContainers addition for sprinkles |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
|
quay.io/biocontainers/sprinter |
singularity registry hpc automated addition for sprinter |
sprinter, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, numba, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap |
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GITHUB
|
quay.io/biocontainers/spyboat |
shpc-registry automated BioContainers addition for spyboat |
pyboat, imageio_download_bin, imageio_remove_bin, skivi, qhelpconverter, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner |
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GITHUB
|
quay.io/biocontainers/spyder |
shpc-registry automated BioContainers addition for spyder |
epylint, isort, jupyter-qtconsole, keyring, pycodestyle, pyflakes, pylint, pyreverse, spyder, symilar, jupyter-nbconvert, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, jupyter-kernel, jupyter-kernelspec, jupyter-run, pybabel, iptest3 |
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GITHUB
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quay.io/biocontainers/spydrpick |
shpc-registry automated BioContainers addition for spydrpick |
SpydrPick |
|
GITHUB
|
quay.io/biocontainers/sqlalchemy-datatables |
shpc-registry automated BioContainers addition for sqlalchemy-datatables |
2to3-3.4, easy_install-3.4, idle3.4, pydoc3.4, python3.4, python3.4-config, python3.4m, python3.4m-config, pyvenv-3.4, tclsh8.5, wish8.5, ncurses5-config, ncursesw5-config, pyvenv |
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GITHUB
|
quay.io/biocontainers/sqlalchemy-utils |
shpc-registry automated BioContainers addition for sqlalchemy-utils |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
|
quay.io/biocontainers/sqlite |
shpc-registry automated BioContainers addition for sqlite |
sqlite3 |
|
GITHUB
|
quay.io/biocontainers/sqlitebrowser |
shpc-registry automated BioContainers addition for sqlitebrowser |
qdoc3, qmlviewer, qt3to4, qtconfig, qttracereplay, sqlitebrowser, pngcp, qhelpconverter, qdbus, qdbuscpp2xml, qdbusviewer, qdbusxml2cpp, xmlpatterns, xmlpatternsvalidator, assistant, designer |
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GITHUB
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quay.io/biocontainers/sqt |
shpc-registry automated BioContainers addition for sqt |
attr, balsam, esdcompat, getfattr, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, lprodump, lrelease-pro, lupdate-pro, meshdebug, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, setfattr, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, sqt, tracegen, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set |
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GITHUB
|
quay.io/biocontainers/squeakr |
shpc-registry automated BioContainers addition for squeakr |
squeakr, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/squeegee |
shpc-registry automated BioContainers addition for squeegee |
existDB, kmer-mask, kraken, kraken-build, kraken-filter, kraken-mpa-report, kraken-report, kraken-translate, mapMers, mapMers-depth, mt19937ar-test, positionDB, simple, squeegee, test-merStream, test-seqCache, test-seqStream, rsync-ssl, meryl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum, tar, capnp, capnpc |
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GITHUB
|
quay.io/biocontainers/squid |
shpc-registry automated BioContainers addition for squid |
squid |
|
GITHUB
|
quay.io/biocontainers/squidpy |
singularity registry hpc automated addition for squidpy |
datashader, fio, gdal2tiles.py, gdal2xyz.py, gdal_calc.py, gdal_edit.py, gdal_fillnodata.py, gdal_merge.py, gdal_pansharpen.py, gdal_polygonize.py, gdal_proximity.py, gdal_retile.py, gdal_sieve.py, gdalattachpct.py, gdalcompare.py, gdalmove.py, ogr_layer_algebra.py, ogrmerge.py, ome_zarr, pct2rgb.py, pyct, pyproj, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rav1e, rbox, rgb2pct.py, torch_shm_manager, xrspatial, SvtAv1EncApp, genl-ctrl-list, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave, nl-link-ifindex2name |
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GITHUB
|
quay.io/biocontainers/squigualiser |
singularity registry hpc automated addition for squigualiser |
selenium-manager, squigualiser, pyfastx, bokeh, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
|
quay.io/biocontainers/squigulator |
singularity registry hpc automated addition for squigulator |
squigulator |
|
GITHUB
|
quay.io/biocontainers/squire |
singularity registry hpc automated addition for squire |
genePredToBed, genePredToGtf, gtfToGenePred, igvtools, prepDE.py, squire, stringtie, STAR, STARlong, bedGraphToBigWig, faidx, my_print_defaults, mysql_config, perror, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap, groupBy |
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GITHUB
|
quay.io/biocontainers/squirrel |
singularity registry hpc automated addition for squirrel |
gofasta, jclusterfunk, msa.smk, phylo.smk, reconstruction.smk, squirrel, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex, rst2xml, iqtree2, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, mako-render, iqtree, numpy-config, jwebserver, yte, plac_runner.py, docutils, pulptest |
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GITHUB
|
quay.io/biocontainers/squizz |
shpc-registry automated BioContainers addition for squizz |
squizz |
|
GITHUB
|
quay.io/biocontainers/sra-human-scrubber |
shpc-registry automated BioContainers addition for sra-human-scrubber |
aligns_to, cut_spots_fastq.py, fastq_to_fasta.py, init_db.sh, scrub.sh, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/sra-tools |
shpc-registry automated BioContainers addition for sra-tools |
abi-dump.3, abi-dump.3.0.0, abi-load, abi-load.3, abi-load.3.0.0, align-cache.3, align-cache.3.0.0, align-info.3, align-info.3.0.0, bam-load.3, bam-load.3.0.0, cache-mgr.3, cache-mgr.3.0.0, ccextract, ccextract.3, ccextract.3.0.0, cg-load.3, cg-load.3.0.0, check-corrupt, check-corrupt.3, check-corrupt.3.0.0, copycat, copycat.3, copycat.3.0.0, crc32sum, crc32sum.3, crc32sum.3.0.0, dump-blob-boundaries, dump-blob-boundaries.3, dump-blob-boundaries.3.0.0, fastconv, fastconv.3, fastconv.3.0.0, fasterq-dump-orig.3.0.0, fasterq-dump.3, fasterq-dump.3.0.0, fastq-dump-orig.3.0.0, fastq-dump.3, fastq-dump.3.0.0, fastq-load, fastq-load.3, fastq-load.3.0.0, helicos-load, helicos-load.3, helicos-load.3.0.0, illumina-dump.3, illumina-dump.3.0.0, illumina-load, illumina-load.3, illumina-load.3.0.0, kar+, kar+.3, kar+.3.0.0, kar+meta, kar+meta.3, kar+meta.3.0.0, kar.3, kar.3.0.0, kdb-index, kdb-index.3, kdb-index.3.0.0, kdbmeta.3, kdbmeta.3.0.0, latf-load.3, latf-load.3.0.0, make-read-filter, make-read-filter.3, make-read-filter.3.0.0, md5cp.3, md5cp.3.0.0, ngs-pileup, ngs-pileup.3, ngs-pileup.3.0.0, pacbio-correct, pacbio-correct.3, pacbio-correct.3.0.0, pacbio-load, pacbio-load.3, pacbio-load.3.0.0, pacbio-loadxml, pacbio-loadxml.3, pacbio-loadxml.3.0.0, prefetch-orig.3.0.0, prefetch.3, prefetch.3.0.0, qual-recalib-stat, qual-recalib-stat.3, qual-recalib-stat.3.0.0, rcexplain.3, rcexplain.3.0.0, read-filter-redact.3, read-filter-redact.3.0.0, rowwritetest, rowwritetest.3, rowwritetest.3.0.0, sam-dump-orig.3.0.0, sam-dump.3, sam-dump.3.0.0, samview, samview-util, samview-util.3, samview-util.3.0.0, samview.3, samview.3.0.0, schema-replace, schema-replace.3, schema-replace.3.0.0, sff-dump.3, sff-dump.3.0.0, sff-load, sff-load.3, sff-load.3.0.0, sharq, sharq.3, sharq.3.0.0, sortreadtest, sortreadtest.3, sortreadtest.3.0.0, sra-pileup-orig.3.0.0, sra-pileup.3, sra-pileup.3.0.0, sra-sort-cg.3, sra-sort-cg.3.0.0, sra-sort.3, sra-sort.3.0.0, sra-stat.3, sra-stat.3.0.0, srapath-orig.3.0.0, srapath.3, srapath.3.0.0, sratools.3, sratools.3.0.0, srf-load, srf-load.3, srf-load.3.0.0, test-download, test-download.3, test-download.3.0.0, test-read-write-cursor, test-read-write-cursor.3, test-read-write-cursor.3.0.0, test-sra.3, test-sra.3.0.0, testld, testld.3, testld.3.0.0, txt2kdb, txt2kdb.3, txt2kdb.3.0.0, vdb-config.3, vdb-config.3.0.0, vdb-copy.3, vdb-copy.3.0.0, vdb-decrypt.3, vdb-decrypt.3.0.0, vdb-diff.3, vdb-diff.3.0.0, vdb-dump-orig.3.0.0, vdb-dump.3, vdb-dump.3.0.0, vdb-encrypt.3, vdb-encrypt.3.0.0, vdb-get, vdb-get.3, vdb-get.3.0.0, vdb-lock.3, vdb-lock.3.0.0, vdb-passwd.3, vdb-passwd.3.0.0, vdb-sql, vdb-sql.3, vdb-sql.3.0.0, vdb-unlock.3, vdb-unlock.3.0.0, vdb-validate.3, vdb-validate.3.0.0, align-cache, fasterq-dump-orig, fastq-dump-orig, md5cp, prefetch-orig, read-filter-redact, sam-dump-orig, sra-pileup-orig, sra-sort-cg, srapath-orig |
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GITHUB
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quay.io/biocontainers/sracat |
shpc-registry automated BioContainers addition for sracat |
sracat |
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GITHUB
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quay.io/biocontainers/srahunter |
singularity registry hpc automated addition for srahunter |
abi-dump.3, abi-dump.3.1.0, align-info.3, align-info.3.1.0, cache-mgr.3, cache-mgr.3.1.0, check-corrupt, check-corrupt.3, check-corrupt.3.1.0, datavzrd, fasterq-dump-orig.3.1.0, fasterq-dump.3, fasterq-dump.3.1.0, fastq-dump-orig.3.1.0, fastq-dump.3, fastq-dump.3.1.0, illumina-dump.3, illumina-dump.3.1.0, kdbmeta.3, kdbmeta.3.1.0, ngs-pileup, ngs-pileup.3, ngs-pileup.3.1.0, prefetch-orig.3.1.0, prefetch.3, prefetch.3.1.0, pyfiglet, rcexplain.3, rcexplain.3.1.0, ref-variation, ref-variation.3, ref-variation.3.1.0, sam-dump-orig.3.1.0, sam-dump.3, sam-dump.3.1.0, sff-dump.3, sff-dump.3.1.0, sra-info, sra-info.3, sra-info.3.1.0, sra-pileup-orig.3.1.0, sra-pileup.3, sra-pileup.3.1.0, sra-search, sra-search.3, sra-search.3.1.0, sra-stat.3, sra-stat.3.1.0, srahunter, srapath-orig.3.1.0, srapath.3, srapath.3.1.0, sratools.3, sratools.3.1.0, test-sra.3, test-sra.3.1.0, var-expand, var-expand.3, var-expand.3.1.0, vdb-config.3, vdb-config.3.1.0, vdb-decrypt.3, vdb-decrypt.3.1.0, vdb-dump-orig.3.1.0, vdb-dump.3, vdb-dump.3.1.0, vdb-encrypt.3, vdb-encrypt.3.1.0, vdb-validate.3, vdb-validate.3.1.0, fasterq-dump-orig, fastq-dump-orig, prefetch-orig, sam-dump-orig, sra-pileup-orig, srapath-orig, sratools, abi-dump, align-info, cache-mgr, fasterq-dump, fastq-dump, illumina-dump, kdbmeta, prefetch, rcexplain, sam-dump, sff-dump, sra-pileup, sra-stat, srapath, test-sra, vdb-config, vdb-decrypt, vdb-dump |
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GITHUB
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quay.io/biocontainers/srax |
shpc-registry automated BioContainers addition for srax |
envpath, sraX, clustalo, funzip, unzipsfx, zipgrep, zipinfo, unzip, muscle, diamond, mafft-sparsecore.rb, einsi |
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GITHUB
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quay.io/biocontainers/srnamapper |
shpc-registry automated BioContainers addition for srnamapper |
srnaMapper |
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GITHUB
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quay.io/biocontainers/srnaminer |
singularity registry hpc automated addition for srnaminer |
ann_exons_ens.pl, ann_exons_ncbi.pl, ann_exons_up_sql.pl, ann_exons_up_www.pl, ann_feats2ipr.pl, ann_feats2ipr_e.pl, ann_feats_up_sql.pl, ann_feats_up_www2.pl, ann_ipr_www.pl, ann_pdb_cath.pl, ann_pdb_vast.pl, ann_pfam27.pl, ann_pfam28.pl, ann_pfam30.pl, ann_pfam30_tmptbl.pl, ann_pfam_www.pl, ann_upfeats_pfam_www_e.pl, annot_blast_btop2.pl, color_defs.pl, exp_up_ensg.pl, expand_links.pl, expand_uniref50.pl, f2py3.11, fasta36, fastf36, fastm36, fasts36, fastx36, fasty36, ggsearch36, glsearch36, lalign36, lav2plt.pl, lavplt_ps.pl, lavplt_svg.pl, links2sql.pl, m8_btop_msa.pl, m9B_btop_msa.pl, map_db, parse_m9.pl, res2R.pl, sRNAminer, shuffle_embed.pl, ssearch36, summ_domain_ident.pl, tfastf36, tfastm36, tfasts36, tfastx36, tfasty36, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex, RNAsnoop, RNAfold, Kinfold, RNALfold, RNAaliduplex, RNAalifold, RNAcofold |
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GITHUB
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quay.io/biocontainers/srnapipe |
shpc-registry automated BioContainers addition for srnapipe |
srnapipe, qualfa2fq.pl, xa2multi.pl, moose-outdated, bwa, package-stash-conflicts, fasta-sanitize.pl, shiftBed, plot-ampliconstats, annotateBed, bamToBed |
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GITHUB
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quay.io/biocontainers/srprism |
shpc-registry automated BioContainers addition for srprism |
srprism |
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GITHUB
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quay.io/biocontainers/srst2 |
shpc-registry automated BioContainers addition for srst2 |
getmlst.py, slurm_srst2.py, srst2, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, f2py2 |
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GITHUB
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quay.io/biocontainers/ssake |
shpc-registry automated BioContainers addition for ssake |
SSAKE, TQS.py, TQSexport.py, TQSfastq.pl, TQSfastq.py, analyzePositionSSAKE.pl, getStats.pl, makeFastaFileFromScaffolds.pl, makePairedOutput.pl, makePairedOutput2EQUALfiles.pl, makePairedOutput2UNEQUALfiles.pl, nLength.pl, qseq2fasta.pl, qseq2fastq.pl, splitInput.pl, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/sscocaller |
shpc-registry automated BioContainers addition for sscocaller |
sscocaller, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/ssdrippipeline |
shpc-registry automated BioContainers addition for ssdrippipeline |
GenomeOntology.pl, HomerConfig.pm, HomerSVGLogo.pm, SIMA.pl, Statistics.pm, addData.pl, addDataHeader.pl, addGeneAnnotation.pl, addInternalData.pl, addOligos.pl, adjustPeakFile.pl, adjustRedunGroupFile.pl, alignmentSieve, analyzeChIP-Seq.pl, analyzeHiC, analyzeRNA.pl, analyzeRepeats.pl, annotateInteractions.pl, annotatePeaks.pl, annotateRelativePosition.pl, annotateTranscripts.pl, assignGeneWeights.pl, assignGenomeAnnotation, assignTSStoGene.pl, bamCompare, bamCoverage, bamPEFragmentSize, batchAnnotatePeaksHistogram.pl, batchFindMotifs.pl, batchFindMotifsGenome.pl, batchMakeHiCMatrix.pl, batchMakeMultiWigHub.pl, batchMakeTagDirectory.pl, batchParallel.pl, bed2DtoUCSCbed.pl, bed2pos.pl, bed2tag.pl, bigwigCompare, blat2gtf.pl, bridgeResult2Cytoscape.pl, changeNewLine.pl, checkPeakFile.pl, checkTagBias.pl, chopUpBackground.pl, chopUpPeakFile.pl, chopify.pl, cleanUpPeakFile.pl, cleanUpSequences.pl, cluster2bed.pl, cluster2bedgraph.pl, combineGO.pl, combineHubs.pl, compareMotifs.pl, computeGCBias, computeMatrix, computeMatrixOperations, condenseBedGraph.pl, cons2fasta.pl, conservationAverage.pl, conservationPerLocus.pl, convertCoordinates.pl, convertIDs.pl, convertOrganismID.pl, correctGCBias, createIGVhtml.pl, deeptools, duplicateCol.pl, eland2tags.pl, estimateReadFiltering, estimateScaleFactor, fasta2tab.pl, fastq2fasta.pl, filterListBy.pl, filterTADsAndCPs.pl, filterTADsAndLoops.pl, filterTagDirectory.pl, findGO.pl, findGOtxt.pl, findHiCCompartments.pl, findHiCDomains.pl, findHiCInteractionsByChr.pl, findKnownMotifs.pl, findMotifs.pl, findMotifsGenome.pl, findPeaks, findRedundantBLAT.pl, findTADsAndLoops.pl, findTADsAndLoopsFromRelMatrix, findTopMotifs.pl, findcsRNATSS.pl, flipPC1toMatch.pl, freq2group.pl, genericConvertIDs.pl, genomeOntology, getChrLengths.pl, getConservedRegions.pl, getDiffExpression.pl, getDifferentialBedGraph.pl, getDifferentialPeaks, getDifferentialPeaksReplicates.pl, getDistalPeaks.pl, getFocalPeaks.pl, getGWASoverlap.pl, getGenesInCategory.pl, getGenomeTilingPeaks, getHiCcorrDiff.pl, getHomerQCstats.pl, getLikelyAdapters.pl, getMappableRegions, getMappingStats.pl, getPartOfPromoter.pl, getPeakTags, getPos.pl, getRandomReads.pl, getSiteConservation.pl, getTopPeaks.pl, gff2pos.pl, go2cytoscape.pl, groupSequences.pl, homer, homer2, homerTools, joinFiles.pl, loadGenome.pl, loadPromoters.pl, macs2, makeBigBedMotifTrack.pl, makeBigWig.pl, makeBinaryFile.pl, makeHiCWashUfile.pl, makeMetaGeneProfile.pl, makeMultiWigHub.pl, makeTagDirectory, makeUCSCfile, map-fastq.pl, merge2Dbed.pl, mergeData.pl, mergePeaks, motif2Jaspar.pl, motif2Logo.pl, multiBamSummary, multiBigwigSummary, parseGTF.pl, plotCorrelation, plotCoverage, plotEnrichment, plotFingerprint, plotHeatmap, plotPCA, plotProfile, pos2bed.pl, prepForR.pl, preparseGenome.pl, profile2seq.pl, qseq2fastq.pl, randRemoveBackground.pl, randomizeGroupFile.pl, randomizeMotifs.pl, removeAccVersion.pl, removeBadSeq.pl, removeOutOfBoundsReads.pl, removePoorSeq.pl, removeRedundantPeaks.pl, renamePeaks.pl, resizePosFile.pl, revoppMotif.pl, rotateHiCmatrix.pl, runHiCpca.pl, sam2spliceJunc.pl, scanMotifGenomeWide.pl, scrambleFasta.pl, selectRepeatBg.pl, seq2profile.pl, ssDRIPSeqAnalysis.py, subtractBedGraphs.pl, subtractBedGraphsDirectory.pl, tab2fasta.pl, tag2bed.pl, tag2pos.pl, tagDir2HiCsummary.pl, tagDir2bed.pl, tagDir2hicFile.pl, zipHomerResults.pl, picard, bedGraphToBigWig, funzip, unzipsfx, zipgrep, zipinfo, unzip, my_print_defaults, mysql_config, perror |
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GITHUB
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quay.io/biocontainers/sshmm |
shpc-registry automated BioContainers addition for sshmm |
AccessFold, AllSub, CircleCompare, CycleFold, DuplexFold, DuplexFold-smp, DynalignDotPlot, EDcalculator, EDcalculator-smp, EnergyPlot, EnsembleEnergy, Fold, Fold-smp, MaxExpect, MaxExpect-smp, NAPSS, OligoWalk, PARTS, ProbKnot, ProbKnot-smp, ProbScan, ProbabilityPlot, ProbablePair, ProbablePair-smp, RNAshapes, RemovePseudoknots, RemovePseudoknots-smp, Rsample, Rsample-smp, ShapeKnots, ShapeKnots-smp, TurboFold, TurboFold-smp, batch_seqstructhmm, bifold, bifold-smp, bipartition, bipartition-smp, ccache-swig, compare_RNA.py, ct2dot, describe_cg.py, design, dot2ct, draw, draw_model_graph, dynalign, dynalign-smp, dynalign_ii, dynalign_ii-smp, efn2, efn2-smp, forgi_config.py, ghmm-config, multilign, multilign-smp, oligoscreen, oligoscreen-smp, partition, partition-smp, phmm, preprocess_dataset, probdist, pseudoknot_analyzer.py, refold, rnaConvert.py, scluster, scorer, smix_hmm, stochastic, stochastic-smp, swig, train_seqstructhmm, validate, visualize_rna.py, transformseq, weblogo, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, cxpm, sxpm, dvipdf |
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GITHUB
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quay.io/biocontainers/sspace_basic |
singularity registry hpc automated addition for sspace_basic |
ExtendOrFormatContigs.pl, ExtendOrFormatContigs.pl.bak, PairingAndScaffolding.pl, PairingAndScaffolding.pl.bak, SSPACE_Basic.pl, SSPACE_Basic.pl.bak, TQS.py, TQS.readme, TQSexport.py, TQSfastq.py, estimate_insert_size.pl, estimate_insert_size.pl.bak, fq_all2std.pl, fq_all2std.pl.bak, qseq2fasta.pl, qseq2fasta.pl.bak, qseq2fastq.pl, qseq2fastq.pl.bak, readLibFiles.pl, readLibFiles.pl.bak, sam_bam2tab.pl, sam_bam2tab.pl.bak, sspace_basic, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, 2to3-3.10, idle3.10 |
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GITHUB
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quay.io/biocontainers/ssu-align |
shpc-registry automated BioContainers addition for ssu-align |
_ssu-align, _ssu-build, _ssu-draw, _ssu-mask, _ssu-merge, _ssu-prep, ssu-align, ssu-build, ssu-cmalign, ssu-cmbuild, ssu-cmcalibrate, ssu-cmemit, ssu-cmfetch, ssu-cmscore, ssu-cmsearch, ssu-cmstat, ssu-draw, ssu-esl-afetch, ssu-esl-alimanip, ssu-esl-alimap, ssu-esl-alimask, ssu-esl-alimerge, ssu-esl-alistat, ssu-esl-cluster, ssu-esl-compalign, ssu-esl-compstruct, ssu-esl-histplot, ssu-esl-mask, ssu-esl-reformat, ssu-esl-selectn, ssu-esl-seqrange, ssu-esl-seqstat, ssu-esl-sfetch, ssu-esl-shuffle, ssu-esl-ssdraw, ssu-esl-weight, ssu-mask, ssu-merge, ssu-prep, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/ssuissero |
shpc-registry automated BioContainers addition for ssuissero |
SsuisSero.sh, check_compression, compress_fast5, demux_fast5, fast5_subset, flye, flye-minimap2, flye-modules, flye-samtools, medaka, medaka_consensus, medaka_counts, medaka_data_path, medaka_variant, medaka_version_report, mini_align, minipolish, multi_to_single_fast5, single_to_multi_fast5, vcfnormalizesvs, vcfnull2ref, vcfunphase, whatshap, minimap2.py, plotBfst.R, plotHapLrt.R, plotHaplotypes.R, plotPfst.R, plotSmoothed.R, plotWCfst.R, plotXPEHH.R, plot_roc.r, racon |
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GITHUB
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quay.io/biocontainers/stacks |
shpc-registry automated BioContainers addition for stacks |
clone_filter, convert_stacks.pl, count_fixed_catalog_snps.py, cstacks, denovo_map.pl, extract_interpop_chars.pl, gstacks, integrate_alignments.py, kmer_filter, phasedstacks, populations, process_radtags, process_shortreads, ref_map.pl, sstacks, stacks-count-reads-per-sample-per-locus, stacks-dist-extract, stacks-gdb, stacks-hist2d-loci-samples-coverage, stacks-integrate-alignments, stacks-samtools-tview, tsv2bam, ustacks, velvetg, velveth, gdlib-config, bp_find-blast-matches.pl, ace.pl, ccconfig, SOAPsh.pl, map, mirrorMappings, mkCSGB2312 |
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GITHUB
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quay.io/biocontainers/stacks_summary |
shpc-registry automated BioContainers addition for stacks_summary |
stacks_summary.py, easy_install-2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5 |
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GITHUB
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quay.io/biocontainers/staden_io_lib |
shpc-registry automated BioContainers addition for staden_io_lib |
append_sff, convert_trace, cram_dump, cram_filter, cram_index, cram_size, extract_fastq, extract_qual, extract_seq, get_comment, hash_exp, hash_extract, hash_list, hash_sff, hash_tar, index_tar, io_lib-config, makeSCF, scf_dump, scf_info, scf_update, scram_flagstat, scram_merge, scram_pileup, scram_test, scramble, srf2fasta, srf2fastq, srf_dump_all, srf_extract_hash, srf_extract_linear, srf_filter, srf_index_hash, srf_info, srf_list, trace_dump, ztr_dump |
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GITHUB
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quay.io/biocontainers/stag |
singularity registry hpc automated addition for stag |
stag, stag_test, stag_test_short, seqtk, cmalign, cmbuild, cmcalibrate, cmconvert, cmemit, cmfetch, cmpress, cmscan, cmsearch, cmstat, prodigal, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev, esl-alistat, esl-compalign, esl-compstruct, esl-construct |
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GITHUB
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quay.io/biocontainers/stamp |
shpc-registry automated BioContainers addition for stamp |
STAMP, checkHierarchy.py, pylupdate4, pyqi, pyrcc4, pyuic4, qdoc3, qmlviewer, qt3to4, qtconfig, qttracereplay, biom, qhelpconverter, sip, futurize, pasteurize, qdbus, qdbuscpp2xml, qdbusviewer, qdbusxml2cpp, xmlpatterns |
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GITHUB
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quay.io/biocontainers/staphb_toolkit |
shpc-registry automated BioContainers addition for staphb_toolkit |
pyfiglet, pysemver, spython, staphb-tk, wsdump, jpackage, cmark, cups-config, ippeveprinter, ipptool, pygmentize, normalizer, futurize, pasteurize, jfr |
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GITHUB
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quay.io/biocontainers/staphopia-sccmec |
shpc-registry automated BioContainers addition for staphopia-sccmec |
executor, staphopia-sccmec, coloredlogs, humanfriendly, CA.pm, cacert.pem, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras |
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GITHUB
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quay.io/biocontainers/star-fusion |
shpc-registry automated BioContainers addition for star-fusion |
PtR, STAR-Fusion, Trinity, TrinityStats.pl, Trinity_gene_splice_modeler.py, abundance_estimates_to_matrix.pl, align_and_estimate_abundance.pl, analyze_blastPlus_topHit_coverage.pl, analyze_diff_expr.pl, atoiindex, blast_and_promiscuity_filter.pl, cmetindex, contig_ExN50_statistic.pl, cpuid, create_datauri, create_report, dbsnp_iit, define_clusters_by_cutting_tree.pl, ensembl_genes, extract_supertranscript_from_reference.py, fa_coords, filter_low_expr_transcripts.pl, get-genome, get_Trinity_gene_to_trans_map.pl, gff3_genes, gff3_introns, gff3_splicesites, gmap.nosimd, gmap.sse42, gmap_build, gmap_cat, gmap_process, gmapindex, gmapl, gmapl.nosimd, gmapl.sse42, gsnap, gsnap.nosimd, gsnap.sse42, gsnapl, gsnapl.nosimd, gsnapl.sse42, gtf_genes, gtf_introns, gtf_splicesites, gtf_transcript_splicesites, gvf_iit, iit_dump, iit_get, iit_store, indexdb_cat, insilico_read_normalization.pl, md_coords, prep_genome_lib.pl, psl_genes, psl_introns, psl_splicesites, retrieve_sequences_from_fasta.pl, run_DE_analysis.pl, run_DE_analysis_from_samples_file.pl, sam_sort, seqtk-trinity, sift_bam_max_cov.pl, snpindex, trindex, vcf_iit, gmap, salmon, kmutate.sh, runhmm.sh, STAR, STARlong, jemalloc-config, jeprof, kmerposition.sh, reformatpb.sh |
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GITHUB
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quay.io/biocontainers/star |
shpc-registry automated BioContainers addition for star |
STAR |
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GITHUB
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quay.io/biocontainers/staramr |
shpc-registry automated BioContainers addition for staramr |
file, green, green3, green3.10, mlst, staramr, unidecode, coverage, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, bp_pairwise_kaks.pl |
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GITHUB
|
quay.io/biocontainers/starcatpy |
singularity registry hpc automated addition for starcatpy |
starcat, numpy-config, h5tools_test_utils, h5fuse.sh, h5delete, natsort, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, normalizer, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp |
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GITHUB
|
quay.io/biocontainers/starcode |
shpc-registry automated BioContainers addition for starcode |
starcode |
|
GITHUB
|
quay.io/biocontainers/stare-abc |
singularity registry hpc automated addition for stare-abc |
CMakeCache.txt, CMakeLists.txt, Juicebox_KR_normalization.sh, Makefile, PSCM_to_PSEM, PSCM_to_PSEM.cpp, ReplaceInvalidChars, ReplaceInvalidChars.cpp, STARE.sh, STARE_ABCpp, STARE_ABCpp.cpp, STARE_MiscFunctions.cpp, STARE_MiscFunctions.h, TF_Gene_Scorer_Reshape, TF_Gene_Scorer_Reshape.cpp, TRAPmulti, TRAPmulti.cpp, cmake_install.cmake, compile_STARE_Linux.sh, compile_STARE_macOS.sh, controlTestCases.sh, libSTARELib.a, runTestCases.sh, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap, groupBy, intersectBed, linksBed, mapBed, maskFastaFromBed, mergeBed, multiBamCov |
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GITHUB
|
quay.io/biocontainers/starfish |
shpc-registry automated BioContainers addition for starfish |
isympy, slicedimage, starfish, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng |
|
GITHUB
|
quay.io/biocontainers/stark |
shpc-registry automated BioContainers addition for stark |
stark |
|
GITHUB
|
quay.io/biocontainers/starseqr |
shpc-registry automated BioContainers addition for starseqr |
gffread, starseqr.py, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/start-asap |
shpc-registry automated BioContainers addition for start-asap |
start-asap, chartex, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/steamboat |
singularity registry hpc automated addition for steamboat |
gisaid-batch, executor, rich-click, numpy-config, markdown-it, coloredlogs, humanfriendly, pigz, unpigz, pygmentize, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/stecfinder |
shpc-registry automated BioContainers addition for stecfinder |
kma, kma_index, kma_shm, kma_update, stecfinder, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides |
|
GITHUB
|
quay.io/biocontainers/stellar |
shpc-registry automated BioContainers addition for stellar |
stellar |
|
GITHUB
|
quay.io/biocontainers/stereogene |
shpc-registry automated BioContainers addition for stereogene |
Binner, Confounder, ParseGenes, Projector, Smoother, StereoGene |
|
GITHUB
|
quay.io/biocontainers/stoatydive |
shpc-registry automated BioContainers addition for stoatydive |
StoatyDive.py, fonttools, pyftmerge, pyftsubset, ttx, brotli, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6 |
|
GITHUB
|
quay.io/biocontainers/straglr |
shpc-registry automated BioContainers addition for straglr |
pathos_connect, portpicker, pox, ppserver, straglr.py, straglr_compare.py, trf4.10.0-rc.2.linux64.exe, trf, get_objgraph, undill, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table |
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GITHUB
|
quay.io/biocontainers/straindesign |
singularity registry hpc automated addition for straindesign |
cameo, depinfo, grako, httpx, kaleido, mathjax-path, isympy, jupyter-execute, jupyter-dejavu, send2trash, pandoc-server, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, cmark, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec, jupyter-run, curve_keygen, ipython3, ipython, py.test, pytest, jupyter-trust, jupyter, jupyter-migrate, jupyter-troubleshoot, jsonschema, certutil |
|
GITHUB
|
quay.io/biocontainers/strainest |
shpc-registry automated BioContainers addition for strainest |
|
|
GITHUB
|
quay.io/biocontainers/strainflye |
singularity registry hpc automated addition for strainflye |
pysamstats, strainFlye, strainflye, doesitcache, iptest3, iptest, pt2to3, ptdump, ptrepack, pttree, ipython3, ipython, cygdb, cython, cythonize, py.test, pytest, natsort, prodigal, sdust, paftools.js, minimap2, k8, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats |
|
GITHUB
|
quay.io/biocontainers/strainge |
shpc-registry automated BioContainers addition for strainge |
kmercoverage, kmerseq, kmersimilarity, kmerspectrum, kmertree, pankmer, pybind11-config, refseq-download, refseq-extract, strainge, straingr, straingst, treepath, doesitcache, ipython3, ipython, cygdb, cython, cythonize, py.test, pytest, natsort, mirror_server |
|
GITHUB
|
quay.io/biocontainers/strainr2 |
singularity registry hpc automated addition for strainr2 |
Plot.R, PreProcessR, StrainR, bloomfilterparser.sh, hashcounter.py, sourmash, subcontig, Xcalcmem.sh, jwebserver, screed, kmutate.sh, runhmm.sh, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, pcre2posix_test, sketchblacklist2.sh, splitribo.sh, addssu.sh, adjusthomopolymers.sh, analyzeaccession.sh, analyzegenes.sh, applyvariants.sh, bbcms.sh, bloomfilter.sh, callgenes.sh, comparegff.sh, consensus.sh |
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GITHUB
|
quay.io/biocontainers/strainscan |
singularity registry hpc automated addition for strainscan |
graphdump, maf2synteny, sibeliaz, sibeliaz-lcb, spoa, strainscan, strainscan_build, twopaco, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, x86_64-conda-linux-gnu-gfortran.bin, pyvenv |
|
GITHUB
|
quay.io/biocontainers/strainseeker |
shpc-registry automated BioContainers addition for strainseeker |
builder.pl, cov.R, drawtree.R, gdistribution, glistcompare, glistmaker, glistquery, gmer_counter, oe.R, seeker.pl, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/strainy |
singularity registry hpc automated addition for strainy |
community, gfapy-convert, gfapy-mergelinear, gfapy-renumber, gfapy-validate, strainy, flye-modules, flye-samtools, flye, flye-minimap2, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, annot-tsv, gff2gff.py, diffimg, delaunay, gts-config, gts2dxf, gts2oogl, gts2stl, gtscheck, gtscompare, gtstemplate, stl2gts, transform, guess-ploidy.py, plot-roh.py |
|
GITHUB
|
quay.io/biocontainers/straitrazor |
shpc-registry automated BioContainers addition for straitrazor |
str8rzr |
|
GITHUB
|
quay.io/biocontainers/strandphaser |
singularity registry hpc automated addition for strandphaser |
|
|
GITHUB
|
quay.io/biocontainers/strangepg |
singularity registry hpc automated addition for strangepg |
strawk, strpg |
|
GITHUB
|
quay.io/biocontainers/stranger |
shpc-registry automated BioContainers addition for stranger |
stranger, coloredlogs, humanfriendly, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/strawc |
shpc-registry automated BioContainers addition for strawc |
pybind11-config, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/strcount |
singularity registry hpc automated addition for strcount |
STRcount, STRcount.py, genome_str_graph_generator.py, parse_gaf.py, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/strdust |
singularity registry hpc automated addition for strdust |
STRdust |
|
GITHUB
|
quay.io/biocontainers/stream |
shpc-registry automated BioContainers addition for stream |
gunicorn, slugify, stream, stream_run_test, zip, unidecode, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, unzip, jupyter-nbconvert, jupyter-kernel, jupyter-kernelspec |
|
GITHUB
|
quay.io/biocontainers/stream_atac |
shpc-registry automated BioContainers addition for stream_atac |
stream_atac, zip, funzip, unzipsfx, zipgrep, zipinfo, jupyter-bundlerextension, jupyter-nbextension, jupyter-notebook, jupyter-serverextension, unzip |
|
GITHUB
|
quay.io/biocontainers/strelka |
shpc-registry automated BioContainers addition for strelka |
configureStrelkaGermlineWorkflow.py, configureStrelkaSomaticWorkflow.py, runStrelkaGermlineWorkflowDemo.bash, runStrelkaSomaticWorkflowDemo.bash, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/stress-ng |
shpc-registry automated BioContainers addition for stress-ng |
stress-ng |
|
GITHUB
|
quay.io/biocontainers/stride |
shpc-registry automated BioContainers addition for stride |
stride |
|
GITHUB
|
quay.io/biocontainers/strike |
shpc-registry automated BioContainers addition for strike |
strike |
|
GITHUB
|
quay.io/biocontainers/stringdecomposer |
shpc-registry automated BioContainers addition for stringdecomposer |
stringdecomposer, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/stringmeup |
shpc-registry automated BioContainers addition for stringmeup |
stringmeup, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/stringmlst |
shpc-registry automated BioContainers addition for stringmlst |
perl5.30.3, stringMLST.py, faidx, qualfa2fq.pl, xa2multi.pl, bwa, xslt-config, xsltproc, shiftBed, annotateBed, bamToBed, bamToFastq |
|
GITHUB
|
quay.io/biocontainers/stringtie |
shpc-registry automated BioContainers addition for stringtie |
prepDE.py, stringtie, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/strip_it |
shpc-registry automated BioContainers addition for strip_it |
babel, obchiral, strip-it, obabel, obconformer, obdistgen, obenergy, obfit, obgen, obgrep, obminimize, obprobe, obprop |
|
GITHUB
|
quay.io/biocontainers/strling |
shpc-registry automated BioContainers addition for strling |
bg-bpipe, bpipe, bpipe-groovy, bpipe-pbspro.sh, bpipe-slurm.sh, bpipe-torque.sh, bpipe-utils.sh, groovy_script, strling, strling-outliers.py, jpackage, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod |
|
GITHUB
|
quay.io/biocontainers/strobealign |
singularity registry hpc automated addition for strobealign |
strobealign |
|
GITHUB
|
quay.io/biocontainers/strobemap |
shpc-registry automated BioContainers addition for strobemap |
StrobeMap, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/structure |
shpc-registry automated BioContainers addition for structure |
structure |
|
GITHUB
|
quay.io/biocontainers/structureharvester |
shpc-registry automated BioContainers addition for structureharvester |
harvesterCore.py, structureHarvester.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
|
GITHUB
|
quay.io/biocontainers/strucvis |
singularity registry hpc automated addition for strucvis |
RNAmultifold, strucVis, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex, RNAsnoop, RNAfold, Kinfold, RNALfold, RNAaliduplex, RNAalifold, RNAcofold, RNAdistance, RNAduplex, RNAeval, RNAforester |
|
GITHUB
|
quay.io/biocontainers/strudel |
shpc-registry automated BioContainers addition for strudel |
strudel, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
|
GITHUB
|
quay.io/biocontainers/sts-smctc |
shpc-registry automated BioContainers addition for sts-smctc |
|
|
GITHUB
|
quay.io/biocontainers/stxtyper |
singularity registry hpc automated addition for stxtyper |
fasta_extract, stx.prot, stxtyper, test_stxtyper.sh, fasta_check, bsmp2info, fsa2xml, gbf2info, just-top-hits, systematic-mutations, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record |
|
GITHUB
|
quay.io/biocontainers/submission-excel2xml |
singularity registry hpc automated addition for submission-excel2xml |
addr2line, ar, as, c++, c++filt, cc, cpp, dwp, elfedit, excel2xml_dra.rb, excel2xml_jga.rb, g++, gcc, gcc-ar, gcc-nm, gcc-ranlib, gcov, gcov-dump, gcov-tool, gfortran, gold, gprof, ld, ld.bfd, ld.gold, nm, objcopy, objdump, ranlib, rbs, rdbg, readelf, size, strings, strip, typeprof, validate_meta_dra.rb, validate_meta_jga.rb, racc, bundle, bundler, gdbm_dump, gdbm_load, gdbmtool, erb, gem, irb, rake, rdoc, ri, ruby |
|
GITHUB
|
quay.io/biocontainers/submission-tool-validator |
shpc-registry automated BioContainers addition for submission-tool-validator |
submission-tool-validator, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, 2to3-3.10 |
|
GITHUB
|
quay.io/biocontainers/subread |
shpc-registry automated BioContainers addition for subread |
detectionCall, exactSNP, featureCounts, flattenGTF, genRandomReads, propmapped, qualityScores, removeDup, repair, subindel, subjunc, sublong, subread-align, subread-buildindex, subread-fullscan, txUnique |
|
GITHUB
|
quay.io/biocontainers/subset-bam |
singularity registry hpc automated addition for subset-bam |
subset-bam |
|
GITHUB
|
quay.io/biocontainers/suds-jurko |
shpc-registry automated BioContainers addition for suds-jurko |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/suma_package |
shpc-registry automated BioContainers addition for suma_package |
sumaclust, sumatra |
|
GITHUB
|
quay.io/biocontainers/sumaclust |
shpc-registry automated BioContainers addition for sumaclust |
sumaclust |
|
GITHUB
|
quay.io/biocontainers/super-focus |
shpc-registry automated BioContainers addition for super-focus |
prerapsearch, rapsearch, superfocus, superfocus_downloadDB, mmseqs, jellyfish, gawk-5.1.0, awk, gawk, diamond, edirect.py, filter-columns, fuse-segments, gene2range |
|
GITHUB
|
quay.io/biocontainers/super_distance |
shpc-registry automated BioContainers addition for super_distance |
super_distance |
|
GITHUB
|
quay.io/biocontainers/superdsm |
singularity registry hpc automated addition for superdsm |
corepack, dask, dav1d, dsdp5, gpustat, node, npm, npx, py-spy, ray, virtualenv, tiff2fsspec, aomdec, aomenc, tiffcomment, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, imageio_download_bin, imageio_remove_bin, skivi, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology |
|
GITHUB
|
quay.io/biocontainers/superstr |
singularity registry hpc automated addition for superstr |
superstr, superstr-multiparse.py, superstr-outliers.py, superstr-screen.py, superstr-visualise.py, cygdb, cython, cythonize, fonttools, pyftmerge, pyftsubset, ttx, tqdm, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, htsfile, bgzip, tabix, python3.1, jpgicc, linkicc, psicc |
|
GITHUB
|
quay.io/biocontainers/suppa |
shpc-registry automated BioContainers addition for suppa |
eventClusterer.py, eventGenerator.py, fileMerger.py, multipleFieldSelection.py, psiCalculator.py, psiPerGene.py, significanceCalculator.py, suppa.py, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/sure |
shpc-registry automated BioContainers addition for sure |
sure, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/surpyvor |
shpc-registry automated BioContainers addition for surpyvor |
SURVIVOR, surpyvor, cyvcf2, coloredlogs, humanfriendly, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl |
|
GITHUB
|
quay.io/biocontainers/survindel2 |
singularity registry hpc automated addition for survindel2 |
clip_consensus_builder, dp_clusterer, features.py, merge_identical_calls, normalise, random_pos_generator.py, reads_categorizer, survindel2.py, survindel2_run_classifier.py, survindel2_train_classifier.py, annot-tsv, vcf_sample_filter.py, vcf_filter.py, vcf_melt, faidx, htsfile, bgzip, tabix, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/survivor |
shpc-registry automated BioContainers addition for survivor |
SURVIVOR |
|
GITHUB
|
quay.io/biocontainers/sv2 |
shpc-registry automated BioContainers addition for sv2 |
sv2, sv2train, f2py2, f2py2.7, idn2, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv |
|
GITHUB
|
quay.io/biocontainers/svaba |
shpc-registry automated BioContainers addition for svaba |
svaba |
|
GITHUB
|
quay.io/biocontainers/svanalyzer |
shpc-registry automated BioContainers addition for svanalyzer |
SVbenchmark, SVcomp, SVmerge, SVrefine, SVwiden, svanalyzer, l4p-tmpl, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer |
|
GITHUB
|
quay.io/biocontainers/svclone |
shpc-registry automated BioContainers addition for svclone |
svclone, vcf_sample_filter.py, vcf_filter.py, vcf_melt, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/svdb |
shpc-registry automated BioContainers addition for svdb |
svdb, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
|
GITHUB
|
quay.io/biocontainers/svdss |
singularity registry hpc automated addition for svdss |
SVDSS, gff2gff.py, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl |
|
GITHUB
|
quay.io/biocontainers/svgutils |
shpc-registry automated BioContainers addition for svgutils |
easy_install-3.6, xslt-config, xsltproc, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config |
|
GITHUB
|
quay.io/biocontainers/svgwrite |
shpc-registry automated BioContainers addition for svgwrite |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/svhip |
singularity registry hpc automated addition for svhip |
RNAmultifold, svhip, tjbench, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold, RNAPKplex, RNAparconv, RNAplex, RNAsnoop, RNAfold, Kinfold, RNALfold, RNAaliduplex, RNAalifold, RNAcofold, RNAdistance, RNAduplex, RNAeval, RNAforester |
|
GITHUB
|
quay.io/biocontainers/svict |
shpc-registry automated BioContainers addition for svict |
svict |
|
GITHUB
|
quay.io/biocontainers/svim-asm |
shpc-registry automated BioContainers addition for svim-asm |
svim-asm, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10 |
|
GITHUB
|
quay.io/biocontainers/svim |
shpc-registry automated BioContainers addition for svim |
|
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GITHUB
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quay.io/biocontainers/svision-pro |
singularity registry hpc automated addition for svision-pro |
SVision-pro, asn1Coding, asn1Decoding, asn1Parser, imgcmp, imginfo, jasper, jiv, opencv_annotation, opencv_interactive-calibration, opencv_model_diagnostics, opencv_version, opencv_visualisation, opencv_waldboost_detector, p11-kit, p11tool, setup_vars_opencv4.sh, trust, vpxdec, vpxenc, x265, ffmpeg, ffprobe, h264dec, h264enc, x264, SvtAv1DecApp, SvtAv1EncApp, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, aomdec, aomenc, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv, psktool, sexp-conv, srptool, ninja |
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GITHUB
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quay.io/biocontainers/svist4get |
shpc-registry automated BioContainers addition for svist4get |
svist4get, svist4get_copier, x86_64-conda-linux-gnu-pkg-config, Magick++-config, MagickCore-config, MagickWand-config, animate, composite, conjure, convert, display, identify |
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GITHUB
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quay.io/biocontainers/svjedi-graph |
singularity registry hpc automated addition for svjedi-graph |
construct-graph.py, f2py3.11, filter-alignments.py, minigraph, predict-genotype.py, svjedi-graph.py, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
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quay.io/biocontainers/svjedi |
shpc-registry automated BioContainers addition for svjedi |
svjedi.py, sdust, paftools.js, minimap2, k8, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10 |
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GITHUB
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quay.io/biocontainers/svmlight |
shpc-registry automated BioContainers addition for svmlight |
svm_classify, svm_learn |
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GITHUB
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quay.io/biocontainers/svsolver |
singularity registry hpc automated addition for svsolver |
setup-symlinks.sh, svpost, svpost.bin, svpre, svpre.bin, svsolver, svsolver.bin, vtkEncodeString-8.1, vtkHashSource-8.1, vtkParseJava-8.1, vtkWrapHierarchy-8.1, vtkWrapJava-8.1, vtkWrapPython-8.1, vtkWrapPythonInit-8.1, vtkWrapTcl-8.1, vtkWrapTclInit-8.1, vtkpython, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun, shmemcc, shmemfort, shmemrun, aggregate_profile.pl, profile2mat.pl, mpiCC, ompi-clean, ompi-server, ompi_info, opal_wrapper, orte-clean, orte-info, orte-server, ortecc, orted |
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GITHUB
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quay.io/biocontainers/svtk |
shpc-registry automated BioContainers addition for svtk |
svtk, jp.py, natsort, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam |
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GITHUB
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quay.io/biocontainers/svtools |
shpc-registry automated BioContainers addition for svtools |
create_coordinates, google_accounts_daemon, google_clock_skew_daemon, google_instance_setup, google_metadata_script_runner, google_network_daemon, google_optimize_local_ssd, google_set_multiqueue, lib_stats.R, sv_classifier.py, svtools, svtyper, svtyper-sso, update_info.py, vcf_allele_freq.py, vcf_group_multiline.py, vcf_modify_header.py, vcf_paste.py, pyrsa-decrypt-bigfile, pyrsa-encrypt-bigfile, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin |
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GITHUB
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quay.io/biocontainers/svtopovz |
singularity registry hpc automated addition for svtopovz |
svtopovz, rav1e, SvtAv1EncApp, dav1d, tiff2fsspec, tiffcomment, aomdec, aomenc, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, imageio_download_bin, imageio_remove_bin, skivi, qconvex, qdelaunay, qhalf, qhull, qvoronoi |
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GITHUB
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quay.io/biocontainers/svtyper |
shpc-registry automated BioContainers addition for svtyper |
lib_stats.R, sv_classifier.py, svtyper, svtyper-sso, update_info.py, vcf_allele_freq.py, vcf_group_multiline.py, vcf_modify_header.py, vcf_paste.py, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/svviz |
shpc-registry automated BioContainers addition for svviz |
svviz, flask, faidx, f2py2, f2py2.7, chardetect, python2-config, python2.7-config, python2, python2.7, idle |
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GITHUB
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quay.io/biocontainers/svync |
singularity registry hpc automated addition for svync |
annot-tsv, svync, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/swalign |
shpc-registry automated BioContainers addition for swalign |
swalign, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/swarm |
shpc-registry automated BioContainers addition for swarm |
amplicon_contingency_table.py, graph_plot.py, swarm, igraph, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis, ndmetis, glpsol, 2to3-3.10, idle3.10 |
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GITHUB
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quay.io/biocontainers/sweepfinder2 |
shpc-registry automated BioContainers addition for sweepfinder2 |
SweepFinder2 |
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GITHUB
|
quay.io/biocontainers/swga |
shpc-registry automated BioContainers addition for swga |
Tm, dsk, pskel, pwiz.py, set_finder, swga, ws, py.test, pytest, faidx, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/swiftlink |
shpc-registry automated BioContainers addition for swiftlink |
swiftlink |
|
GITHUB
|
quay.io/biocontainers/swipe |
shpc-registry automated BioContainers addition for swipe |
mpiswipe, swipe, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun |
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GITHUB
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quay.io/biocontainers/sword |
shpc-registry automated BioContainers addition for sword |
sword |
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GITHUB
|
quay.io/biocontainers/sylph |
singularity registry hpc automated addition for sylph |
sylph |
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GITHUB
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quay.io/biocontainers/symbiontscreener |
singularity registry hpc automated addition for symbiontscreener |
existDB, f2py3.11, kmer-mask, mapMers, mapMers-depth, mt19937ar-test, positionDB, simple, sysc, test-merStream, test-seqCache, test-seqStream, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, meryl, seqkit, jellyfish, python3.1 |
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GITHUB
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quay.io/biocontainers/synapseclient |
shpc-registry automated BioContainers addition for synapseclient |
keyring, synapse, normalizer, futurize, pasteurize, dbus-cleanup-sockets, dbus-daemon, dbus-launch, dbus-monitor, dbus-run-session, dbus-send, dbus-test-tool |
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GITHUB
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quay.io/biocontainers/syngap |
singularity registry hpc automated addition for syngap |
CrossMap.py, SynGAP.py, compare_gos.py, coveralls, custom.py, dav1d, dual.py, evi.py, eviplot.py, fasta-nr, fetch_associations.py, find_enrichment.py, genepair.py, gffread, go_plot.py, last-split5, lastal5, lastdb5, liftOver, maf-cut, map_to_slim.py, ncbi_gene_results_to_python.py, plot_go_term.py, protoc-gen-mypy, protoc-gen-mypy_grpc, prt_terms.py, syngap, triple.py, wr_hier.py, wr_sections.py, fastq-interleave, last-dotplot, last-map-probs, last-pair-probs, last-postmask, last-split, last-train, lastal, lastdb, maf-convert, maf-join, maf-sort, maf-swap, parallel-fasta, parallel-fastq, TMalign, last-merge-batches, tiff2fsspec, blastn_vdb, make_pscores.pl, tblastn_vdb, aomdec, aomenc, poa, tiffcomment |
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GITHUB
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quay.io/biocontainers/syny |
singularity registry hpc automated addition for syny |
Arabidopsis.sh, Cryptococcus.sh, Encephalitozoonidae.sh, SYNY.yaml, check_mp_colors.py, check_versions.pl, clusters2links.pl, clusters_to_paf.pl, fasta_to_gbff.pl, get_homology.pl, get_paf.pl, get_synteny.pl, id_conserved_regions.pl, linear_maps.py, list_maker.pl, mashmap, mashmap-align, nucleotide_biases.pl, paf2links.pl, paf_metrics.py, paf_to_barplot.py, paf_to_dotplot.py, paf_to_heatmap.py, pl2bat.pl, protein_cluster_hm.py, run_syny.pl, setup_syny.pl, versions.txt, LICENSE, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gbf2fsa, gbf2ref, gm2ranges, gm2segs, ini2xml |
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GITHUB
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quay.io/biocontainers/syri |
singularity registry hpc automated addition for syri |
chroder, syri, igraph, docutils, pulptest, cmpfillin, gpmetis, graphchk, m2gmetis, mpmetis, ndmetis, cbc, clp, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py, rst2xetex.py, rst2xml.py, rstpep2html.py, glpsol, f2py3.9 |
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GITHUB
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quay.io/biocontainers/t-coffee |
shpc-registry automated BioContainers addition for t-coffee |
DrawGram.jar, DrawTree.jar, TMalign, TMscore, bstats, bundle, bundler, clique, comppair, consense, contml, contrast, conus_compare, conus_train, dca, dialign-tx, dnacomp, dnadist, dnainvar, dnaml, dnamlk, dnamove, dnapars, dnapenny, dollop, dolmove, dolpenny, drawgram, drawgram_gui, drawtree, drawtree_gui, fakealigner, faketree, fasttreeMP, fitch, gendist, hmmeralign, hmmerbuild, hyperopt-mongo-worker, kalign, kitsch, make_pscores.pl, mix, move, mustang, neighbor, opal.jar, pModel, padaligner, pars, penny, phylip, poa, probcons, probconsRNA, proml, promlk, protdist, protpars, racc, racc2y, randtree, raxml, raxmlp, restdist, restml, retree, run_pasta.py, run_pasta_gui.py, run_seqtools.py, sap, scompare, seqboot, sfold, strain_ml, treedist, y2racc, clustalo, gdbm_dump, gdbm_load, gdbmtool, prank, bl2seq, blastall, blastclust, blastpgp, copymat |
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GITHUB
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quay.io/biocontainers/t1dgrs2 |
singularity registry hpc automated addition for t1dgrs2 |
plink, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, normalizer, python3.1 |
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GITHUB
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quay.io/biocontainers/t1k |
singularity registry hpc automated addition for t1k |
AddGeneCoord.pl, ParseDatFile.pl, analyzer, bam-extractor, fastq-extractor, genotyper, run-t1k, t1k-build.pl, t1k-merge.py, t1k-smartseq.pl, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/t_coffee |
shpc-registry automated BioContainers addition for t_coffee |
t_coffee, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, perl5.26.2, podselect |
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GITHUB
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quay.io/biocontainers/tabix |
shpc-registry automated BioContainers addition for tabix |
tabix, htsfile, bgzip |
|
GITHUB
|
quay.io/biocontainers/tabixpp |
shpc-registry automated BioContainers addition for tabixpp |
tabix++, bc, dc, fasta-sanitize.pl, plot-ampliconstats, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl |
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GITHUB
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quay.io/biocontainers/table2asn |
singularity registry hpc automated addition for table2asn |
table2asn |
|
GITHUB
|
quay.io/biocontainers/tablet |
shpc-registry automated BioContainers addition for tablet |
tablet, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj, orbd |
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GITHUB
|
quay.io/biocontainers/tabulate |
shpc-registry automated BioContainers addition for tabulate |
tabulate, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/tabview |
shpc-registry automated BioContainers addition for tabview |
tabview, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
|
quay.io/biocontainers/taco |
shpc-registry automated BioContainers addition for taco |
pyi-archive_viewer, pyi-bindepend, pyi-grab_version, pyi-makespec, pyi-set_version, pyinstaller, taco_refcomp, taco_run, easy_install-2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5 |
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GITHUB
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quay.io/biocontainers/tadarida-c |
shpc-registry automated BioContainers addition for tadarida-c |
tadaridaC.r |
|
GITHUB
|
quay.io/biocontainers/tadarida-d |
shpc-registry automated BioContainers addition for tadarida-d |
qdoc3, qmlviewer, qt3to4, qtconfig, qttracereplay, tadaridaD, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set |
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GITHUB
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quay.io/biocontainers/tadbit |
shpc-registry automated BioContainers addition for tadbit |
gem-indexer, gem-mapper, gem-retriever, normalize_oneD.R, tadbit, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray, mcxassemble |
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GITHUB
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quay.io/biocontainers/tadlib |
singularity registry hpc automated addition for tadlib |
calfea, cmtime, domaincaller, get_gprof, h5fuse.sh, hitad, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, mckey, output-DI, protoc-24.3.0, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, tad-plot, ucmatose, udaddy, udpong, io_demo, ucx_info, ucx_perftest, ucx_read_profile, dask, elastipubsub5, mqtt5_app, mqtt5_canary, mqtt5canary, nosetests-3.9, produce_x_platform_fuzz_corpus, run_x_platform_fuzz_corpus, cooler, isympy, torchrun, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix, pairs_merger |
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GITHUB
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quay.io/biocontainers/tadrep |
singularity registry hpc automated addition for tadrep |
archspec, pgv-download-dataset, pgv-gui, pgv-mmseqs, pgv-mummer, pgv-pmauve, pgv-simpleplot, tadrep, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gbf2fsa, gbf2ref, gm2ranges, gm2segs, ini2xml, jsonl2xml |
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GITHUB
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quay.io/biocontainers/tadtool |
shpc-registry automated BioContainers addition for tadtool |
tadtool, futurize, pasteurize, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc |
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GITHUB
|
quay.io/biocontainers/taeper |
shpc-registry automated BioContainers addition for taeper |
fast5_subset, multi_to_single_fast5, single_to_multi_fast5, taeper, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, h5clear |
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GITHUB
|
quay.io/biocontainers/tag |
shpc-registry automated BioContainers addition for tag |
tag, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
|
quay.io/biocontainers/tagger |
shpc-registry automated BioContainers addition for tagger |
ccache-swig, swig, tagcorpus, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
|
quay.io/biocontainers/tagore |
shpc-registry automated BioContainers addition for tagore |
|
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GITHUB
|
quay.io/biocontainers/tajimas_d |
singularity registry hpc automated addition for tajimas_d |
tajimas_d, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/takeabreak |
shpc-registry automated BioContainers addition for takeabreak |
TakeABreak |
|
GITHUB
|
quay.io/biocontainers/talloc |
shpc-registry automated BioContainers addition for talloc |
|
|
GITHUB
|
quay.io/biocontainers/talon |
shpc-registry automated BioContainers addition for talon |
talon, talon_abundance, talon_create_GTF, talon_fetch_reads, talon_filter_transcripts, talon_generate_report, talon_get_sjs, talon_initialize_database, talon_label_reads, talon_reformat_gtf, talon_summarize, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, faidx, f2py3.6 |
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GITHUB
|
quay.io/biocontainers/tandem-genotypes |
shpc-registry automated BioContainers addition for tandem-genotypes |
tandem-genotypes, tandem-genotypes-join, tandem-genotypes-merge, tandem-genotypes-plot, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/tango |
shpc-registry automated BioContainers addition for tango |
tango, ete3, diamond, qhelpconverter, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner, repc |
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GITHUB
|
quay.io/biocontainers/tapestry |
shpc-registry automated BioContainers addition for tapestry |
clean, weave, paftools.js, minimap2, k8, tqdm, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config |
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GITHUB
|
quay.io/biocontainers/taranis |
shpc-registry automated BioContainers addition for taranis |
Dockerfile, allele_calling.py, analyze_schema.py, create_schema.py, distance_matrix.py, environment.yml, logging_config.ini, reference_alleles.py, taranis.py, taranis_configuration.py, tbl2asn-test, fix-sqn-date, faketime, real-tbl2asn, prokka-abricate_to_fasta_db, prokka, prokka-biocyc_to_fasta_db, prokka-build_kingdom_dbs, prokka-cdd_to_hmm, prokka-clusters_to_hmm, prokka-genbank_to_fasta_db |
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GITHUB
|
quay.io/biocontainers/tardis |
shpc-registry automated BioContainers addition for tardis |
kseq_count, kseq_split, tardis, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
|
quay.io/biocontainers/targetdb |
shpc-registry automated BioContainers addition for targetdb |
dpocket, ffmpeg, ffprobe, fpocket, h264dec, h264enc, hyper, imgcmp, imginfo, jasper, lame, mdpocket, opencv_annotation, opencv_interactive-calibration, opencv_version, opencv_visualisation, opencv_waldboost_detector, setup_vars_opencv4.sh, targetDB, target_DB, tmrdemo, tpocket, x264, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2, ocsptool, pkcs1-conv, psktool |
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GITHUB
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quay.io/biocontainers/targetfinder |
shpc-registry automated BioContainers addition for targetfinder |
ann_exons_ens.pl, ann_exons_ncbi.pl, ann_exons_up_sql.pl, ann_exons_up_www.pl, ann_feats2ipr.pl, ann_feats2ipr_e.pl, ann_feats_up_sql.pl, ann_feats_up_www2.pl, ann_ipr_www.pl, ann_pdb_cath.pl, ann_pdb_vast.pl, ann_pfam27.pl, ann_pfam28.pl, ann_pfam30.pl, ann_pfam30_tmptbl.pl, ann_pfam_www.pl, ann_upfeats_pfam_www_e.pl, annot_blast_btop2.pl, color_defs.pl, exp_up_ensg.pl, expand_links.pl, expand_uniref50.pl, fasta36, fastf36, fastm36, fasts36, fastx36, fasty36, ggsearch36, glsearch36, lalign36, lav2plt.pl, lavplt_ps.pl, lavplt_svg.pl, links2sql.pl, m8_btop_msa.pl, m9B_btop_msa.pl, map_db, merge_blast_btab.pl, parse_m9.pl, res2R.pl, shuffle_embed.pl, ssearch36, summ_domain_ident.pl, targetfinder.pl, targetfinder_threads.pl, tfastf36, tfastm36, tfasts36, tfastx36, tfasty36, perl5.32.0, streamzip |
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GITHUB
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quay.io/biocontainers/targetscan |
singularity registry hpc automated addition for targetscan |
targetscan_70.pl, perl5.32.1, streamzip |
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GITHUB
|
quay.io/biocontainers/targqc |
shpc-registry automated BioContainers addition for targqc |
annotate_bed.py, cols, ipcluster, ipcontroller, ipengine, ldc-build-runtime, ldc-profdata, ldc-prune-cache, ldc2, ldmd2, qualimap, tabutils, targqc, tsv, sambamba, coverage, gffutils-cli, intersection_matrix.py, intron_exon_reads.py, jupyter-kernel, jupyter-kernelspec, jupyter-run, nosetests, pbt_plotting_example.py |
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GITHUB
|
quay.io/biocontainers/taseq |
singularity registry hpc automated addition for taseq |
taseq, taseq_draw, taseq_filter, taseq_genotype, taseq_hapcall, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, gatk, numpy-config, picard, annot-tsv, trimmomatic, jpackage, qualfa2fq.pl, xa2multi.pl, bwa, cups-config, ippeveprinter, ipptool, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, hb-info, fasta-sanitize.pl |
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GITHUB
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quay.io/biocontainers/tasmanian-mismatch |
shpc-registry automated BioContainers addition for tasmanian-mismatch |
run_intersections, run_tasmanian, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
|
quay.io/biocontainers/tassel |
shpc-registry automated BioContainers addition for tassel |
run_anything.pl, run_pipeline.pl, start_tassel.pl, perl5.32.0, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell |
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GITHUB
|
quay.io/biocontainers/tatajuba |
shpc-registry automated BioContainers addition for tatajuba |
tatajuba |
|
GITHUB
|
quay.io/biocontainers/taxadb |
singularity registry hpc automated addition for taxadb |
pwiz.py, taxadb, normalizer, tqdm, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/taxator-tk |
shpc-registry automated BioContainers addition for taxator-tk |
alignments-filter, binner, fasta-strip-identifier, last-merge-batches, last_maf_convert.py, taxator, taxatortk.py, taxknife, taxsummary2krona, f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
|
quay.io/biocontainers/taxmapper |
shpc-registry automated BioContainers addition for taxmapper |
ddls, taxmapper, compile-et.pl, prerr.properties, pt2to3, ptdump, ptrepack, pttree, qdistancefieldgenerator, qmlpreview, qvkgen, certutil |
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GITHUB
|
quay.io/biocontainers/taxmyphage |
singularity registry hpc automated addition for taxmyphage |
taxmyphage, 2to3-3.12, blastn_vdb, idle3.12, pydoc3.12, python3.12, python3.12-config, tblastn_vdb, uuid, uuid-config, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, test_pcre, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides |
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GITHUB
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quay.io/biocontainers/taxonkit |
shpc-registry automated BioContainers addition for taxonkit |
taxonkit |
|
GITHUB
|
quay.io/biocontainers/taxonomy |
shpc-registry automated BioContainers addition for taxonomy |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/taxonomy_ranks |
shpc-registry automated BioContainers addition for taxonomy_ranks |
taxaranks, ete3, compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util |
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GITHUB
|
quay.io/biocontainers/taxopy |
shpc-registry automated BioContainers addition for taxopy |
2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/taxor |
singularity registry hpc automated addition for taxor |
cmp, diff, diff3, sdiff, taxor, egrep, fgrep, grep, basenc, b2sum, ls, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd, df, dir, dircolors |
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GITHUB
|
quay.io/biocontainers/taxpasta |
singularity registry hpc automated addition for taxpasta |
depinfo, f2py3.11, taxpasta, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, cmark, pygmentize, futurize, pasteurize, python3.1 |
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GITHUB
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quay.io/biocontainers/taxsbp |
shpc-registry automated BioContainers addition for taxsbp |
binpacking, taxsbp, futurize, pasteurize, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/taxtastic |
shpc-registry automated BioContainers addition for taxtastic |
taxit, runxlrd.py, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/tb-ml |
singularity registry hpc automated addition for tb-ml |
tb-ml, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/tb-profiler |
shpc-registry automated BioContainers addition for tb-profiler |
add_dummy_AD.py, combine_vcf_variants.py, delly, rename_vcf_chrom.py, tb-profiler, gatk, tabix++, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, plotBfst.R |
|
GITHUB
|
quay.io/biocontainers/tb_variant_filter |
shpc-registry automated BioContainers addition for tb_variant_filter |
tb_bed_to_region_list, tb_region_list_to_bed, tb_variant_filter, xslt-config, xsltproc, chardetect, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/tbb |
shpc-registry automated BioContainers addition for tbb |
|
|
GITHUB
|
quay.io/biocontainers/tbl2asn-forever |
shpc-registry automated BioContainers addition for tbl2asn-forever |
faketime, real-tbl2asn, tbl2asn, idn |
|
GITHUB
|
quay.io/biocontainers/tbl2asn |
shpc-registry automated BioContainers addition for tbl2asn |
|
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GITHUB
|
quay.io/biocontainers/tbox-scan |
shpc-registry automated BioContainers addition for tbox-scan |
tbox-scan, RNAdos, AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold |
|
GITHUB
|
quay.io/biocontainers/tbpore |
shpc-registry automated BioContainers addition for tbpore |
mongod, mongos, mykrobe, psdm, rasusa, resmoke.py, tbpore, seqkit, cyvcf2, x86_64-conda_cos7-linux-gnu-ld, gff2gff.py, coloredlogs, vcf_sample_filter.py, humanfriendly, vcf_filter.py, vcf_melt, sdust |
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GITHUB
|
quay.io/biocontainers/tbtamr |
singularity registry hpc automated addition for tbtamr |
csvtk, delly, split_ref_by_bai_datasize.py, tbtamr, vcfnullgenofields, vcfwave, jwebserver, sam_add_rg.pl, update_version.sh, samclip, tabix++, snpEff, bamleftalign, coverage_to_regions.py, fasta_generate_regions.py, freebayes-parallel, generate_freebayes_region_scripts.sh, pcre2posix_test, freebayes, abba-baba, bFst, bed2region, bgziptabix, dumpContigsFromHeader, genotypeSummary, hapLrt, iHS, meltEHH, normalize-iHS, pFst, pVst |
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GITHUB
|
quay.io/biocontainers/tbvcfreport |
shpc-registry automated BioContainers addition for tbvcfreport |
tbvcfreport, vcf_sample_filter.py, vcf_filter.py, vcf_melt, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
|
quay.io/biocontainers/tcdemux |
singularity registry hpc automated addition for tcdemux |
Xcalcmem.sh, bloomfilterparser.sh, eido, jwebserver, protoc-23.4.0, tcdemux, write_barcode_file.py, kmutate.sh, runhmm.sh, markdown-it, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, sketchblacklist2.sh, splitribo.sh, addssu.sh, adjusthomopolymers.sh, analyzeaccession.sh, analyzegenes.sh, applyvariants.sh, bbcms.sh, bloomfilter.sh, callgenes.sh, comparegff.sh, consensus.sh, cutgff.sh, fetchproks.sh, filterqc.sh |
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GITHUB
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quay.io/biocontainers/tcfinder |
singularity registry hpc automated addition for tcfinder |
tcfinder |
|
GITHUB
|
quay.io/biocontainers/tciaclient |
singularity registry hpc automated addition for tciaclient |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/tclap |
shpc-registry automated BioContainers addition for tclap |
|
|
GITHUB
|
quay.io/biocontainers/tdrmapper |
shpc-registry automated BioContainers addition for tdrmapper |
TdrMappingScripts.pl, perl5.32.0, streamzip |
|
GITHUB
|
quay.io/biocontainers/tecount |
shpc-registry automated BioContainers addition for tecount |
TEcount, fasta-sanitize.pl, shiftBed, plot-ampliconstats, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam |
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GITHUB
|
quay.io/biocontainers/tedna |
shpc-registry automated BioContainers addition for tedna |
tedna |
|
GITHUB
|
quay.io/biocontainers/tefinder |
singularity registry hpc automated addition for tefinder |
NWalign, SWalign, TRsearch, TSDsearch, align2bed, align2piler, align2recon, blaster2.32, cutterDB, fastlalign, filterAlign, grouperThreads2.32, halign, hrepeat, hsearch, itrsearch, ltrsearch, map2db, map2flank3, map2flank5, map2flank53, mapOp, mapdist, mapsize, matcherThreads2.32, orienter, pathnum2id, polyAtail, refalign, rpt_map, setnum2id, statalign, tabnum2id, bsmp2info, fsa2xml, gbf2info, just-top-hits, systematic-mutations, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, bl2seq, blastall, blastclust, blastpgp, blst2gm, cit2pmid, combine-uid-lists, copymat, difference-uid-lists, download-pmc, ds2pme, fastacmd, fetch-local |
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GITHUB
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quay.io/biocontainers/telescope |
shpc-registry automated BioContainers addition for telescope |
telescope, futurize, pasteurize, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config |
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GITHUB
|
quay.io/biocontainers/teloclip |
shpc-registry automated BioContainers addition for teloclip |
teloclip, teloclip-extract, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
|
quay.io/biocontainers/telometer |
singularity registry hpc automated addition for telometer |
numpy-config, telometer, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
|
quay.io/biocontainers/teloscope |
singularity registry hpc automated addition for teloscope |
teloscope |
|
GITHUB
|
quay.io/biocontainers/telosearchlr |
singularity registry hpc automated addition for telosearchlr |
TeloSearchLR.py, TideHunter, bio, fasta_filter.py, numpy-config, xslt-config, xsltproc, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tqdm, tjbench, normalizer, opj_compress, opj_decompress, opj_dump |
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GITHUB
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quay.io/biocontainers/telr |
shpc-registry automated BioContainers addition for telr |
DateRepeats, DupMasker, ProcessRepeats, RepeatMasker, RepeatProteinMask, calcDivergenceFromAlign.pl, createRepeatLandscape.pl, dupliconToSVG.pl, flye, flye-minimap2, flye-modules, flye-samtools, getRepeatMaskerBatch.pl, ngmlr, queryRepeatDatabase.pl, queryTaxonomyDatabase.pl, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, sniffles, sniffles-debug, telr, trfMask, wtdbg-cns, wtdbg2, wtpoa-cns, rmblastn, trf4.10.0-rc.2.linux64.exe, trf, certtool, gnutls-cli, gnutls-cli-debug, gnutls-serv, nettle-hash, nettle-lfib-stream, nettle-pbkdf2 |
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GITHUB
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quay.io/biocontainers/telseq |
shpc-registry automated BioContainers addition for telseq |
telseq, bamtools |
|
GITHUB
|
quay.io/biocontainers/tendo |
shpc-registry automated BioContainers addition for tendo |
pbr, x86_64-conda_cos7-linux-gnu-ld, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/tepeaks |
shpc-registry automated BioContainers addition for tepeaks |
TEpeaks |
|
GITHUB
|
quay.io/biocontainers/tepid |
shpc-registry automated BioContainers addition for tepid |
samblaster, tepid-discover, tepid-map, tepid-map-se, tepid-refine, yaha, intersection_matrix.py, intron_exon_reads.py, nosetests, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, bowtie2 |
|
GITHUB
|
quay.io/biocontainers/terminus |
shpc-registry automated BioContainers addition for terminus |
terminus |
|
GITHUB
|
quay.io/biocontainers/terrace |
singularity registry hpc automated addition for terrace |
annot-tsv, terrace, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/tesorter |
shpc-registry automated BioContainers addition for tesorter |
LTR_retriever.py, RepeatMasker.py, TEsorter, TEsorter-test, concatenate_domains.py, get_record.py, ppserver.py, CA.pm, cacert.pem, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras, pm-collect, readme.pdf |
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GITHUB
|
quay.io/biocontainers/tesseract |
shpc-registry automated BioContainers addition for tesseract |
convertfilestopdf, convertfilestops, convertformat, convertsegfilestopdf, convertsegfilestops, converttopdf, converttops, fileinfo, printimage, printsplitimage, printtiff, splitimage2pdf, tesseract, xtractprotos |
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GITHUB
|
quay.io/biocontainers/testfixtures |
shpc-registry automated BioContainers addition for testfixtures |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
|
quay.io/biocontainers/tetoolkit |
shpc-registry automated BioContainers addition for tetoolkit |
TEcount, TEtranscripts, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, python2-config, python2.7-config, python2 |
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GITHUB
|
quay.io/biocontainers/tetranscripts |
shpc-registry automated BioContainers addition for tetranscripts |
TEcount, TEtranscripts, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv, c89 |
|
GITHUB
|
quay.io/biocontainers/tetrimmer |
singularity registry hpc automated addition for tetrimmer |
BuildDatabase, LAI, LTRPipeline, LTR_retriever, LTR_retriever.py, Linup, Ninja, Refiner, RepeatClassifier, RepeatMasker.py, RepeatModeler, RepeatScout, TEsorter, TEsorter-test, TEtrimmer, alignAndCallConsensus.pl, bigRmskAlignBed.as, bigRmskBed.as, bsmp2info, build_lmer_table, combineRMFiles.pl, compare-out-to-gff.prl, concatenate_domains.py, convert_MGEScan3.0.pl, convert_ltr_struc.pl, convert_ltrdetector.pl, edgeredef, eledef, eleredef, famdef, filter-stage-1.prl, filter-stage-2.prl, fsa2xml, gbf2info, generateSeedAlignments.pl, get_gprof, get_record.py, imagespread, just-top-hits, makeclusterdb, merge-lmer-tables.prl, nmerge, nseg, numpy-config, pfam_scan.pl, ppserver.py, renumberRMFiles.pl, rmToTrackHub.pl, systematic-mutations, viewMSA.pl, maskFile.pl, genometools-config, gt, RM2Bed.py, buildRMLibFromEMBL.pl, buildSummary.pl, wublastToCrossmatch.pl, DupMasker, ProcessRepeats, RepeatMasker, RepeatProteinMask, calcDivergenceFromAlign.pl, createRepeatLandscape.pl, dupliconToSVG.pl, getRepeatMaskerBatch.pl, rmOut2Fasta.pl, rmOutToGFF3.pl, rmToUCSCTables.pl, trfMask, rmblastn, TMalign, iqtree2, make_pscores.pl, twoBitToFa, poa |
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GITHUB
|
quay.io/biocontainers/tetyper |
shpc-registry automated BioContainers addition for tetyper |
TETyper.py, cds-mapping-stats, cds-subgraphs, mag-improve, spades-convert-bin-to-fasta, spades-gsimplifier, spades-kmer-estimating, spades-read-filter, spaligner, spades-bwa, spades-core |
|
GITHUB
|
quay.io/biocontainers/textinput |
shpc-registry automated BioContainers addition for textinput |
filter, hidehead, innerjoin, intersect, mean, nohead, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/tf-comb |
singularity registry hpc automated addition for tf-comb |
TOBIAS, cluster_sites_by_overlap.py, community, compare_gos.py, fetch_associations.py, filter_important_factors.py, find_enrichment.py, get_gprof, go_plot.py, map_to_slim.py, moods-dna.py, ncbi_gene_results_to_python.py, plot_go_term.py, prt_terms.py, qnorm, svist4get, svist4get_copier, uropa, uropa2gtf.R, uropa_summary.R, wr_hier.py, wr_sections.py, ccache-swig, swig, mpg123, mpg123-id3dump, mpg123-strip, out123, xgboost, dumpsexp, gpg-error, gpgrt-config, hmac256, libgcrypt-config, mpicalc, yat2m, lame, markdown-it, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, attr, balsam, getfattr |
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GITHUB
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quay.io/biocontainers/tgsgapcloser |
shpc-registry automated BioContainers addition for tgsgapcloser |
tgsgapcloser, sdust, paftools.js, minimap2, k8 |
|
GITHUB
|
quay.io/biocontainers/tgt |
shpc-registry automated BioContainers addition for tgt |
tgt-concatenate-textgrids.py, tgt-extract-part.py, tgt-print-tiernames.py, tgt-shift-boundaries.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/thapbi-pict |
shpc-registry automated BioContainers addition for thapbi-pict |
amplicon_contingency_table.py, graph_plot.py, swarm, thapbi_pict, flash, igraph, cutadapt, vba_extract.py, trimmomatic, cxpm, sxpm, pigz, unpigz, fetch-extras |
|
GITHUB
|
quay.io/biocontainers/theiacov-gc |
singularity registry hpc automated addition for theiacov-gc |
cromwell, find, locate, theiacov-gc, theiacov-gc-organize.py, theiacov-gc-prepare.py, updatedb, womtool, xargs, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, cups-config, ippeveprinter, ipptool, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs, pack200, rmic, rmid, unpack200, jdeps, jar, jarsigner |
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GITHUB
|
quay.io/biocontainers/thermorawfileparser |
shpc-registry automated BioContainers addition for thermorawfileparser |
ThermoRawFileParser, ThermoRawFileParser.exe, ThermoRawFileParser.exe.config, ThermoRawFileParser.sh, csc, csc-dim, csi, illinkanalyzer, monograph, nunit-console, nunit-console2, nunit-console4, thermorawfileparser, vbc, mono-package-runtime, sgen-grep-binprot, al, al2, caspol, cccheck, ccrewrite, cert-sync, cert2spc, certmgr |
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GITHUB
|
quay.io/biocontainers/thesias |
shpc-registry automated BioContainers addition for thesias |
THESIAS, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, 2to3-3.10 |
|
GITHUB
|
quay.io/biocontainers/theta2 |
shpc-registry automated BioContainers addition for theta2 |
RunTHetA.py, qhelpconverter, f2py2, f2py2.7, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner, repc |
|
GITHUB
|
quay.io/biocontainers/tiara |
singularity registry hpc automated addition for tiara |
tiara, tiara-test, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, tabulate, numba, pycc, tqdm, futurize, pasteurize, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/tiberius |
singularity registry hpc automated addition for tiberius |
annotation_gtf.py, checksum-profile, create_tf_records.py, data_generator.py, data_generator_h5.py, datasets-cli, elastishadow, eval_model_class.py, filter_gtf.py, gene_pred_hmm.py, gene_pred_hmm_emitter.py, gene_pred_hmm_transitioner.py, genome_anno.py, genome_fasta.py, huggingface-cli, kmer.py, models.py, nuc_trans.py, parse_args.py, plot_lossV2.ipynb, predict_gtf.py, tiberius, tiberius.py, train.py, transformers-cli, unit_tests.py, validation_from_tfrecords.py, wig2np.py, wig_class.py, write_tfrecord_species.py, get_gprof, flatc, protoc-25.3.0, xxh128sum, xxh32sum, xxh64sum, xxhsum, import_pb_to_tensorboard, elastipubsub5, h5tools_test_utils, mqtt5_app, mqtt5_canary, mqtt5canary, estimator_ckpt_converter, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py, bed_count_overlapping.py |
|
GITHUB
|
quay.io/biocontainers/tiddit |
shpc-registry automated BioContainers addition for tiddit |
bfc, fermi2, fermi2.pl, ropebwt2, tiddit, seqtk, qualfa2fq.pl, xa2multi.pl, bwa, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/tidehunter |
shpc-registry automated BioContainers addition for tidehunter |
TideHunter |
|
GITHUB
|
quay.io/biocontainers/tides-ml |
singularity registry hpc automated addition for tides-ml |
alembic, optuna, tides, kraken2, kraken2-build, kraken2-inspect, blastn_vdb, tblastn_vdb, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, mpg123, mpg123-id3dump, mpg123-strip, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, libgcrypt-config, mpicalc, yat2m, lame, mako-render, sip-build, sip-distinfo |
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GITHUB
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quay.io/biocontainers/tidk |
singularity registry hpc automated addition for tidk |
tidk |
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GITHUB
|
quay.io/biocontainers/tidyp |
shpc-registry automated BioContainers addition for tidyp |
tidyp |
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GITHUB
|
quay.io/biocontainers/tigmint |
shpc-registry automated BioContainers addition for tigmint |
gunzip, gzexe, gzip, indexlr, lrunzip, lrzcat, lrzip, lrztar, lrzuntar, tigmint, tigmint-arcs-tsv, tigmint-cut, tigmint-make, tigmint_estimate_dist.py, tigmint_molecule.py, tigmint_molecule_paf.py, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zmore, znew, zsh, zsh-5.8, zip, x86_64-conda_cos7-linux-gnu-ld, tar, pigz, unpigz, sdust, paftools.js, minimap2, k8, qualfa2fq.pl |
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GITHUB
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quay.io/biocontainers/tin-score-calculation |
shpc-registry automated BioContainers addition for tin-score-calculation |
FPKM-UQ.py, FPKM_count.py, RNA_fragment_size.py, RPKM_saturation.py, bam2fq.py, bam2wig.py, bam_stat.py, calculate-tin.py, clipping_profile.py, deletion_profile.py, divide_bam.py, geneBody_coverage.py, geneBody_coverage2.py, infer_experiment.py, inner_distance.py, insertion_profile.py, junction_annotation.py, junction_saturation.py, merge-tin.py, mismatch_profile.py, normalize_bigwig.py, overlay_bigwig.py, plot-tin.py, read_GC.py, read_NVC.py, read_distribution.py, read_duplication.py, read_hexamer.py, read_quality.py, split_bam.py, split_paired_bam.py, summarize-tin.py, tin.py, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
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GITHUB
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quay.io/biocontainers/tinscan |
shpc-registry automated BioContainers addition for tinscan |
tinscan-align, tinscan-find, tinscan-prep, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/tiny-count |
singularity registry hpc automated addition for tiny-count |
htseq-count-barcodes, tiny-count, htseq-count, htseq-qa, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/tinyalign |
shpc-registry automated BioContainers addition for tinyalign |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/tinyfasta |
shpc-registry automated BioContainers addition for tinyfasta |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/tinysink |
shpc-registry automated BioContainers addition for tinysink |
tinysink, rsync-ssl, rsync, xxh128sum, xxh32sum, xxh64sum, xxhsum |
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GITHUB
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quay.io/biocontainers/tiptoft |
shpc-registry automated BioContainers addition for tiptoft |
tiptoft, tiptoft_database_downloader, fastaq, cygdb, cython, cythonize, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config |
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GITHUB
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quay.io/biocontainers/tir-learner |
singularity registry hpc automated addition for tir-learner |
TIR-Learner, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gbf2fsa, gbf2ref, genl-ctrl-list, genometools-config, get_gprof, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, gm2ranges, gm2segs, grf-alignment, grf-alignment2, grf-dbn, grf-filter, grf-intersperse, grf-main, grf-mite-cluster, grf-nest, gt, idiag-socket-details, ini2xml, jsonl2xml, just-first-key, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nhance.sh, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave, nl-link-ifindex2name, nl-link-list, nl-link-name2ifindex, nl-link-release, nl-link-set, nl-link-stats, nl-list-caches, nl-list-sockets, nl-monitor, nl-neigh-add, nl-neigh-delete, nl-neigh-list, nl-neightbl-list, nl-nh-list, nl-pktloc-lookup, nl-qdisc-add, nl-qdisc-delete, nl-qdisc-list, nl-route-add, nl-route-delete, nl-route-get, nl-route-list, nl-rule-list, nl-tctree-list, nl-util-addr, pma2apa, pma2pme, pmc2bioc, pmc2info, quote-grouped-elements, ref2pmid, refseq-nm-cds, scn2xml, stream-local, test-pmc-index, toml2xml, yaml2xml, flatc, dask, protoc-24.4.0, cmtime, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, mckey, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream, ucmatose, udaddy, udpong |
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GITHUB
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quay.io/biocontainers/tirmite |
shpc-registry automated BioContainers addition for tirmite |
tirmite, tsplit-LTR, tsplit-TIR, fastaq, mapview, mgaps, run-mummer1, run-mummer3, combineMUMs, delta-filter, dnadiff, exact-tandems, mummer |
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GITHUB
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quay.io/biocontainers/tissuumaps |
singularity registry hpc automated addition for tissuumaps |
SvtAv1DecApp, SvtAv1EncApp, dav1d, dec265, gsf, gsf-office-thumbnailer, gsf-vba-dump, h5fuse.sh, hdrcopy, matdump, openslide-quickhash1sum, openslide-show-properties, openslide-write-png, rav1e, tissuumaps, tissuumaps_server, vips, vipsedit, vipsheader, vipsprofile, vipsthumbnail, x265, aomdec, aomenc, orc-bugreport, orcc, pdfsig, h5delete, pdfattach, pdfdetach, pdffonts, pdfimages, pdfinfo, pdfseparate, pdftocairo, pdftohtml, pdftoppm, pdftops, pdftotext, pdfunite, fitscopy, fpack, funpack, imcopy, smem, flask, aec |
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GITHUB
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quay.io/biocontainers/titan-gc |
shpc-registry automated BioContainers addition for titan-gc |
cromwell, find, locate, titan-gc, titan-gc-organize.py, titan-gc-prepare.py, updatedb, womtool, xargs, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/titanomics |
singularity registry hpc automated addition for titanomics |
countAssembly.py, flash2, flye, flye-minimap2, flye-modules, flye-samtools, gpustat, py-spy, ray, titan.py, megahit_core, megahit_core_no_hw_accel, megahit_core_popcnt, fastp, megahit, megahit_toolkit, fastqc, igzip, pyrsa-decrypt, pyrsa-encrypt, pyrsa-keygen, pyrsa-priv2pub, pyrsa-sign, pyrsa-verify, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, jsonschema, protoc |
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GITHUB
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quay.io/biocontainers/tksm |
singularity registry hpc automated addition for tksm |
tksm, tqdm, brotli, normalizer, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
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quay.io/biocontainers/tmb |
shpc-registry automated BioContainers addition for tmb |
mosdepth, pyEffGenomeSize.py, pyTMB.py, cyvcf2, coloredlogs, humanfriendly, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv |
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GITHUB
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quay.io/biocontainers/tmhg |
singularity registry hpc automated addition for tmhg |
archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gawk-5.3.0, gawkbug, gbf2fsa, gbf2ref, get_gprof, gm2ranges, gm2segs, ini2xml, jsonl2xml, just-first-key, nhance.sh, pathos_connect, pma2apa, pma2pme, pmc2bioc, pmc2info, portpicker, pox, ppserver, quote-grouped-elements, ref2pmid, refseq-nm-cds, scn2xml, stream-local, test-pmc-index, tmhgf, toml2xml, yaml2xml, blastn_vdb, tblastn_vdb, dendropy-format, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, get_objgraph, undill, sumlabels.py, sumtrees.py, test_pcre, awk, gawk, mafft-sparsecore.rb, einsi, fftns, fftnsi, ginsi, linsi, mafft-distance, mafft-einsi, mafft-fftns, mafft-fftnsi |
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GITHUB
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quay.io/biocontainers/tmux |
shpc-registry automated BioContainers addition for tmux |
event_rpcgen.py, tmux, ncurses5-config |
|
GITHUB
|
quay.io/biocontainers/tn93 |
shpc-registry automated BioContainers addition for tn93 |
ShortestPathTN93, fasta_diff, nucfreqsfasta, readreduce, selectreads, seqcoverage, seqdiff, tn93, tn93-cluster |
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GITHUB
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quay.io/biocontainers/tntblast |
singularity registry hpc automated addition for tntblast |
tntblast |
|
GITHUB
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quay.io/biocontainers/tobias |
shpc-registry automated BioContainers addition for tobias |
TOBIAS, ccache-swig, croco-0.6-config, csslint-0.6, filter_important_factors.py, moods-dna.py, svist4get, svist4get_copier, swig, x86_64-conda_cos6-linux-gnu-pkg-config, g-ir-doc-tool, giffilter, gifsponge, vba_extract.py, g-ir-annotation-tool, g-ir-compiler, g-ir-generate, g-ir-inspect, g-ir-scanner, intersection_matrix.py |
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GITHUB
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quay.io/biocontainers/toil |
shpc-registry automated BioContainers addition for toil |
_toil_contained_executor, _toil_mesos_executor, _toil_worker, bagit.py, black, black-primer, blackd, cwltoil, galaxy-tool-test, mulled-build, mulled-build-channel, mulled-build-files, mulled-build-tool, mulled-search, prov-compare, prov-convert, toil, toil-cwl-runner, wsdump, cwltool, schema-salad-doc, schema-salad-tool, asadmin, bundle_image, cfadmin, cq, csv2rdf, cwutil, dynamodb_dump |
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GITHUB
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quay.io/biocontainers/tolkein |
singularity registry hpc automated addition for tolkein |
tolkein, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tqdm, normalizer, python3.1 |
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GITHUB
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quay.io/biocontainers/tombo |
shpc-registry automated BioContainers addition for tombo |
graphmap, tombo, perl5.22.0, c2ph, pstruct, cygdb, cython, cythonize, minimap2, qualfa2fq.pl, xa2multi.pl, bwa |
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GITHUB
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quay.io/biocontainers/tooldistillator |
singularity registry hpc automated addition for tooldistillator |
tooldistillator, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
|
quay.io/biocontainers/toolshed |
shpc-registry automated BioContainers addition for toolshed |
toolshed, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/topas |
shpc-registry automated BioContainers addition for topas |
topas, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
|
quay.io/biocontainers/tophat-recondition |
shpc-registry automated BioContainers addition for tophat-recondition |
tophat-recondition, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/tophat |
shpc-registry automated BioContainers addition for tophat |
|
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GITHUB
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quay.io/biocontainers/toposort |
shpc-registry automated BioContainers addition for toposort |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/toulligqc |
shpc-registry automated BioContainers addition for toulligqc |
toulligqc, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, h5clear |
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GITHUB
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quay.io/biocontainers/tower-cli |
singularity registry hpc automated addition for tower-cli |
tw |
|
GITHUB
|
quay.io/biocontainers/tpmcalculator |
shpc-registry automated BioContainers addition for tpmcalculator |
TPMCalculator, bamtools |
|
GITHUB
|
quay.io/biocontainers/tpp |
shpc-registry automated BioContainers addition for tpp |
ASAPRatioPeptideParser, ASAPRatioProteinRatioParser, ASAPRatioPvalueParser, CombineOut, CompactParser, DatabaseParser, DiscoFilter, InterProphetParser, InteractParser, LibraPeptideParser, LibraProteinRatioParser, Mascot2XML, Mayu.pl, MzXML2Search, Out2XML, PTMProphetParser, PepXMLViewer.cgi, PeptideMapper, PeptideProphetParser, ProphetModels.pl, ProtProphModels.pl, ProteinProphet, Q3ProteinRatioParser, RTCalc, RTCatalogParser, RefreshParser, RespectParser, SSRCalc3.par, SSRCalc3.pl, Sequest2XML, Sqt2XML, StPeter, Tandem2XML, XPressPeptideParser, XPressProteinRatioParser, add_mz, batchcoverage, calculate_pi, checkdb, compareProts.pl, compareProts3.pl, compareProts_ClusterHM.pl, createChargeFile.pl, decoyFASTA, decoyFastaGenerator.pl, digestdb, exporTPP.pl, fileDownloader.pl, get_prots.pl, hardklor, mergeCharges.pl, out2summary, pep_dbcount, pepxmlcheck.pl, perl-reversion, protxml2html.pl, renamedat.pl, replaceall.pl, spectrast, subsetdb, tpp_hostname, tpp_models.pl, tpptray.bat, translateDNA2AA-FASTA, updatepaths.pl, xinteract, perl5.22.0, c2ph, pstruct, lwp-download, lwp-dump, lwp-mirror, lwp-request, cpanm, podselect |
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GITHUB
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quay.io/biocontainers/tqdist |
shpc-registry automated BioContainers addition for tqdist |
all_pairs_quartet_dist, all_pairs_triplet_dist, pairs_quartet_dist, pairs_triplet_dist, quartet_dist, triplet_dist |
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GITHUB
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quay.io/biocontainers/tqdm |
shpc-registry automated BioContainers addition for tqdm |
tqdm, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/tr-trimmer |
singularity registry hpc automated addition for tr-trimmer |
tr-trimmer |
|
GITHUB
|
quay.io/biocontainers/tracegroomer |
singularity registry hpc automated addition for tracegroomer |
dmypy, dotenv, mypy, mypyc, stubgen, stubtest, tracegroomer, sphinx-apidoc, sphinx-autogen, sphinx-build, sphinx-quickstart, pybabel, docutils, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py, rst2xetex.py, rst2xml.py, rstpep2html.py, pygmentize, tjbench |
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GITHUB
|
quay.io/biocontainers/tracer |
shpc-registry automated BioContainers addition for tracer |
tracer, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/trackhub |
shpc-registry automated BioContainers addition for trackhub |
rst2html4.py, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py, rst2xetex.py |
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GITHUB
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quay.io/biocontainers/tracknado |
singularity registry hpc automated addition for tracknado |
cookiecutter, slugify, tracknado, markdown-it, docutils, f2py3.11, rst2html4.py, tjbench, rst2html5.py, rst2html.py, rst2latex.py, rst2man.py, rst2odt.py, rst2odt_prepstyles.py, rst2pseudoxml.py, rst2s5.py, rst2xetex.py, rst2xml.py, rstpep2html.py, pygmentize, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, chardetect, fonttools, pyftmerge |
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GITHUB
|
quay.io/biocontainers/trackplot |
singularity registry hpc automated addition for trackplot |
dask, filetype, h5delete, trackplot, cooler, bam2pairs, column_remover.pl, duplicate_header_remover.pl, fragment_4dnpairs.pl, juicer_shortform2pairs.pl, merge-pairs.sh, merged_nodup2pairs.pl, old_merged_nodup2pairs.pl, pairix, pairs_merger, process_merged_nodup.sh, process_old_merged_nodup.sh, streamer_1d, aec, dask-scheduler, dask-ssh, dask-worker, get_objgraph, undill, bokeh, pt2to3, ptdump, ptrepack, pttree |
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GITHUB
|
quay.io/biocontainers/tracs |
singularity registry hpc automated addition for tracs |
gimme_taxa.py, htsbox, sourmash, tracs, ncbi-genome-download, ngd, pyfastx, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, screed, numpy-config, annot-tsv, minimap2, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, fasta-sanitize.pl, plot-ampliconstats, tqdm, fonttools, pyftmerge, pyftsubset, ttx |
|
GITHUB
|
quay.io/biocontainers/tracy |
shpc-registry automated BioContainers addition for tracy |
tracy, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/traitar |
shpc-registry automated BioContainers addition for traitar |
domtblout2gene_generic.py, heatmap.py, hmm2gff.py, hmmer2filtered_best.py, merge_preds.py, predict.py, traitar, qhelpconverter, f2py2, f2py2.7, qwebengine_convert_dict, canbusutil, qgltf, qmlcachegen, qscxmlc, qtattributionsscanner, repc |
|
GITHUB
|
quay.io/biocontainers/trand |
singularity registry hpc automated addition for trand |
trand, x86_64-conda_cos7-linux-gnu-ld, fonttools, pyftmerge, pyftsubset, ttx, brotli, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools, closestBed, clusterBed, complementBed, coverageBed, expandCols, fastaFromBed, flankBed, genomeCoverageBed, getOverlap, groupBy |
|
GITHUB
|
quay.io/biocontainers/transabyss |
shpc-registry automated BioContainers addition for transabyss |
abyss-db-csv, skip_psl_self.awk, skip_psl_self_ss.awk, strip_sam_qual.awk, strip_sam_seq_qual.awk, strip_sam_seq_qual_noself.awk, transabyss, transabyss-merge, abyss-bloom-dbg, abyss-bloom-dist.mk.Makefile, abyss-db-txt, abyss-dida, abyss-paired-dbg, abyss-paired-dbg-mpi, abyss-pe.Makefile, abyss-sealer, ABYSS, ABYSS-P |
|
GITHUB
|
quay.io/biocontainers/transannot |
singularity registry hpc automated addition for transannot |
transannot, aria2c, gawk-5.1.0, awk, gawk, idn2, wget |
|
GITHUB
|
quay.io/biocontainers/transcomb |
shpc-registry automated BioContainers addition for transcomb |
Assemble, CorrectName, Pre_Alignment, TransComb, bamtools-2.4.0, bamtools, easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5 |
|
GITHUB
|
quay.io/biocontainers/transcov |
shpc-registry automated BioContainers addition for transcov |
transcov, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/transcriptm |
singularity registry hpc automated addition for transcriptm |
bamFlags, bamm, bioruby, br_biofetch.rb, br_bioflat.rb, br_biogetseq.rb, br_pmfetch.rb, create-db-indices.sh, dirseq, fxtract, indexdb_rna, sortmerna, transcriptm, erb, gem, irb, rake, rdoc, ri, ruby, fastqc, trimmomatic, qualfa2fq.pl, xa2multi.pl, bwa, f2py2, f2py2.7, fasta-sanitize.pl, shiftBed, plot-ampliconstats, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv, bedpeToBam, bedtools |
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GITHUB
|
quay.io/biocontainers/transdecoder |
shpc-registry automated BioContainers addition for transdecoder |
TransDecoder.LongOrfs, TransDecoder.Predict, cdna_alignment_orf_to_genome_orf.pl, compute_base_probs.pl, exclude_similar_proteins.pl, fasta_prot_checker.pl, ffindex_resume.pl, gene_list_to_gff.pl, get_FL_accs.pl, get_longest_ORF_per_transcript.pl, get_top_longest_fasta_entries.pl, gff3_file_to_bed.pl, gff3_file_to_proteins.pl, gff3_gene_to_gtf_format.pl, gtf_genome_to_cdna_fasta.pl, gtf_to_alignment_gff3.pl, gtf_to_bed.pl, nr_ORFs_gff3.pl, pfam_runner.pl, refine_gff3_group_iso_strip_utrs.pl, refine_hexamer_scores.pl, remove_eclipsed_ORFs.pl, score_CDS_likelihood_all_6_frames.pl, select_best_ORFs_per_transcript.pl, seq_n_baseprobs_to_loglikelihood_vals.pl, start_codon_refinement.pl, train_start_PWM.pl, uri_unescape.pl, db_convert, db_archive, db_checkpoint, db_deadlock, db_dump, db_hotbackup, db_load, db_log_verify, db_printlog, db_recover |
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GITHUB
|
quay.io/biocontainers/transgenescan |
shpc-registry automated BioContainers addition for transgenescan |
FGS_gff.py, TransGeneScan, post_process.pl, processFragOut.py, run_TransGeneScan.pl |
|
GITHUB
|
quay.io/biocontainers/transindel |
shpc-registry automated BioContainers addition for transindel |
transIndel_build_DNA.py, transIndel_build_RNA.py, transIndel_call.py, htseq-count, htseq-qa, f2py2, f2py2.7, fasta-sanitize.pl, plot-ampliconstats, python2-config, python2.7-config, python2, python2.7 |
|
GITHUB
|
quay.io/biocontainers/transit |
shpc-registry automated BioContainers addition for transit |
tpp, transit, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/translate-gard |
shpc-registry automated BioContainers addition for translate-gard |
node, npm, translate-gard |
|
GITHUB
|
quay.io/biocontainers/translatorx |
shpc-registry automated BioContainers addition for translatorx |
translatorx, translatorx_vLocal.pl, muscle, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/translig |
shpc-registry automated BioContainers addition for translig |
Assemble, Get_output, TransLiG_iteration, connect_graph, refine |
|
GITHUB
|
quay.io/biocontainers/transposcope |
shpc-registry automated BioContainers addition for transposcope |
transposcope, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, f2py3.7 |
|
GITHUB
|
quay.io/biocontainers/transposonpsi |
shpc-registry automated BioContainers addition for transposonpsi |
BPbtab, TBLASTN_hit_chainer.pl, TBLASTN_hit_chainer_nonoverlapping_genome_DP_extraction.pl, TPSI_btab_to_gff3.pl, TPSI_chains_to_fasta.pl, TPSI_chains_to_gff3.pl, m2fmt_tier_hits.pl, transposonPSI.pl, transposon_db_m2fmt_to_gff3.pl, bl2seq, blastall, blastclust, blastpgp, copymat, fastacmd, formatdb, formatrpsdb, impala, makemat |
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GITHUB
|
quay.io/biocontainers/transrate-tools |
shpc-registry automated BioContainers addition for transrate-tools |
bam-read |
|
GITHUB
|
quay.io/biocontainers/transrate |
shpc-registry automated BioContainers addition for transrate |
|
|
GITHUB
|
quay.io/biocontainers/transtermhp |
shpc-registry automated BioContainers addition for transtermhp |
2ndscore, calibrate.sh, make_expterm.py, mfold_rna.sh, transterm |
|
GITHUB
|
quay.io/biocontainers/trawler |
shpc-registry automated BioContainers addition for trawler |
trawler, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500, gslj, gslp, gsnd, lprsetup.sh |
|
GITHUB
|
quay.io/biocontainers/tree-qmc |
singularity registry hpc automated addition for tree-qmc |
TREE-QMC |
|
GITHUB
|
quay.io/biocontainers/treebest |
shpc-registry automated BioContainers addition for treebest |
treebest |
|
GITHUB
|
quay.io/biocontainers/treecluster |
shpc-registry automated BioContainers addition for treecluster |
TreeCluster.py, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/treekin |
shpc-registry automated BioContainers addition for treekin |
qd-config, treekin |
|
GITHUB
|
quay.io/biocontainers/treemaker |
shpc-registry automated BioContainers addition for treemaker |
treemaker, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/treemix |
shpc-registry automated BioContainers addition for treemix |
f4ratio, fourpop, plotting_funcs.R, threepop, treemix, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/treeqmc |
singularity registry hpc automated addition for treeqmc |
tree-qmc |
|
GITHUB
|
quay.io/biocontainers/treerecs |
shpc-registry automated BioContainers addition for treerecs |
treerecs |
|
GITHUB
|
quay.io/biocontainers/treesapp |
shpc-registry automated BioContainers addition for treesapp |
epa-ng, pyfastx, raxml-ng, raxml-ng-mpi, samsum, treesapp, mmseqs, FastTree-2.1.10.c, vsearch, ete3, FastTreeMP, FastTree, fasttree, gawk-5.1.0, xkbcli, aggregate_profile.pl |
|
GITHUB
|
quay.io/biocontainers/treeshrink |
singularity registry hpc automated addition for treeshrink |
decompose.py, make_gene_folder.py, run_treeshrink, run_treeshrink.py, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/treesimulator |
singularity registry hpc automated addition for treesimulator |
generate_bd, generate_bdei, generate_bdss, generate_mtbd, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, numpy-config, mpg123, mpg123-id3dump, mpg123-strip, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, mpicalc, yat2m, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, balsam, lprodump, lrelease-pro, lupdate-pro |
|
GITHUB
|
quay.io/biocontainers/treeswift |
shpc-registry automated BioContainers addition for treeswift |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/treetime |
shpc-registry automated BioContainers addition for treetime |
treetime, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10 |
|
GITHUB
|
quay.io/biocontainers/trf |
shpc-registry automated BioContainers addition for trf |
trf |
|
GITHUB
|
quay.io/biocontainers/trgt |
singularity registry hpc automated addition for trgt |
trgt, trvz |
|
GITHUB
|
quay.io/biocontainers/tribal |
singularity registry hpc automated addition for tribal |
pyomo, tribal, dnapars, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, gawk-5.3.0, gawkbug, mpg123, mpg123-id3dump, mpg123-strip, out123, dumpsexp, gpg-error, gpgrt-config, hmac256, mpicalc, yat2m, lame, sip-build, sip-distinfo, sip-install, sip-module, sip-sdist, sip-wheel, balsam, lprodump |
|
GITHUB
|
quay.io/biocontainers/triform2 |
shpc-registry automated BioContainers addition for triform2 |
triform2, aggregate_scores_in_intervals.py, align_print_template.py, axt_extract_ranges.py, axt_to_fasta.py, axt_to_lav.py, axt_to_maf.py, bed_bigwig_profile.py, bed_build_windows.py, bed_complement.py, bed_count_by_interval.py |
|
GITHUB
|
quay.io/biocontainers/trim-galore |
shpc-registry automated BioContainers addition for trim-galore |
trim_galore, cutadapt, fastqc, igzip, pigz, unpigz, jfr, jaotc, aserver, jdeprscan, jhsdb |
|
GITHUB
|
quay.io/biocontainers/trim_isoseq_polya |
shpc-registry automated BioContainers addition for trim_isoseq_polya |
trim_isoseq_polyA |
|
GITHUB
|
quay.io/biocontainers/trimal |
shpc-registry automated BioContainers addition for trimal |
trimal, readal, statal |
|
GITHUB
|
quay.io/biocontainers/trimap |
singularity registry hpc automated addition for trimap |
numba, pycc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
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GITHUB
|
quay.io/biocontainers/trimmomatic |
shpc-registry automated BioContainers addition for trimmomatic |
trimmomatic, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
|
quay.io/biocontainers/trimnami |
singularity registry hpc automated addition for trimnami |
eido, protoc-24.3.0, trimnami, markdown-it, stone, yte, plac_runner.py, docutils, pulptest, cbc, clp, humanfriendly, snakemake, snakemake-bash-completion, jp.py, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, tabulate, jupyter-trust, py.test, pytest, jupyter, jupyter-migrate |
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GITHUB
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quay.io/biocontainers/trimns_vgp |
shpc-registry automated BioContainers addition for trimns_vgp |
clip_regions_DNAnexus.py, remove_fake_cut_sites_DNAnexus.py, trim_Ns_DNAnexus.py, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, jpgicc, linkicc |
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GITHUB
|
quay.io/biocontainers/trinculo |
shpc-registry automated BioContainers addition for trinculo |
trinculo |
|
GITHUB
|
quay.io/biocontainers/trinity |
shpc-registry automated BioContainers addition for trinity |
trinity, Trinity, Trinity-test, perl5.22.0, c2ph, pstruct, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool |
|
GITHUB
|
quay.io/biocontainers/trinotate |
shpc-registry automated BioContainers addition for trinotate |
Build_Trinotate_Boilerplate_SQLite_db.pl, EMBL_dat_to_Trinotate_sqlite_resourceDB.pl, EMBL_swissprot_parser.pl, PFAM_dat_parser.pl, PFAMtoGoParser.pl, RnammerTranscriptome.pl, Trinotate, TrinotateSeqLoader.pl, Trinotate_BLAST_loader.pl, Trinotate_GO_to_SLIM.pl, Trinotate_GTF_loader.pl, Trinotate_GTF_or_GFF3_annot_prep.pl, Trinotate_PFAM_loader.pl, Trinotate_RNAMMER_loader.pl, Trinotate_SIGNALP_loader.pl, Trinotate_TMHMM_loader.pl, Trinotate_get_feature_name_encoding_attributes.pl, Trinotate_report_writer.pl, assign_eggnog_funccats.pl, autoTrinotate.pl, build_DE_cache_tables.pl, cleanMe.pl, cleanme.pl, count_table_fields.pl, create_clusters_tables.pl, extract_GO_assignments_from_Trinotate_xls.pl, extract_GO_for_BiNGO.pl, extract_specific_genes_from_all_matrices.pl, import_DE_results.pl, import_Trinotate_xls_as_annot.pl, import_expression_and_DE_results.pl, import_expression_matrix.pl, import_samples_n_expression_matrix.pl, import_samples_only.pl, import_transcript_annotations.pl, import_transcript_clusters.pl, import_transcript_names.pl, init_Trinotate_sqlite_db.pl, make_cXp_html.pl, obo_tab_to_sqlite_db.pl, obo_to_tab.pl, prep_nuc_prot_set_for_trinotate_loading.pl, print.pl, rnammer_supperscaffold_gff_to_indiv_transcripts.pl, runMe.pl, run_TrinotateWebserver.pl, run_cluster_functional_enrichment_analysis.pl, shrink_db.pl, sqlite.pl, superScaffoldGenerator.pl, test_Barplot.pl, test_GO_DAG.pl, test_GenomeBrowser.pl, test_Heatmap.pl, test_Lineplot.pl, test_Piechart.pl, test_Scatter2D.pl, test_Sunburst.pl, trinotate_report_summary.pl, update_seq_n_annotation_fields.pl, findrule, test_pcre, config_data, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf, seedtop, dbilogstrip, dbiprof |
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GITHUB
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quay.io/biocontainers/triqler |
shpc-registry automated BioContainers addition for triqler |
triqler, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/tritimap |
shpc-registry automated BioContainers addition for tritimap |
abyss-db-csv, bioawk, bwa-mem2, bwa-mem2.avx, bwa-mem2.avx2, bwa-mem2.avx512bw, bwa-mem2.sse41, bwa-mem2.sse42, coronaspades.py, metaplasmidspades.py, metaviralspades.py, rnaviralspades.py, tritimap, stone, bam2bed, bam2bed-float128, bam2bed-megarow, bam2bed-typical, bam2bed_gnuParallel, bam2bed_gnuParallel-float128, bam2bed_gnuParallel-megarow, bam2bed_gnuParallel-typical, bam2bed_sge |
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GITHUB
|
quay.io/biocontainers/trnanalysis |
shpc-registry automated BioContainers addition for trnanalysis |
EukHighConfidenceFilter, bq, cgat, covels-SE, coves-SE, detectionCall, eufindtRNA, exactSNP, fasta2gsi, fastq_screen, featureCounts, flattenGTF, gcloud, genRandomReads, propmapped, qualityScores, removeDup, repair, sstofa, subindel, subjunc, sublong, subread-align, subread-buildindex, subread-fullscan, tRNAscan-SE, tRNAscan-SE.conf, time, trnanalysis, trnascan-1.4, txUnique, gsutil, multiqc, egrep, fgrep, grep, wigToBigWig, bedGraphToBigWig, bedToBigBed, giffilter, gifsponge |
|
GITHUB
|
quay.io/biocontainers/trnascan-se |
shpc-registry automated BioContainers addition for trnascan-se |
EukHighConfidenceFilter, covels-SE, coves-SE, eufindtRNA, fasta2gsi, sstofa, tRNAscan-SE, tRNAscan-SE.conf, trnascan-1.4, cmalign, cmbuild, cmcalibrate, cmconvert, cmemit, cmfetch, cmpress, cmscan, cmsearch, cmstat |
|
GITHUB
|
quay.io/biocontainers/troika-tb |
singularity registry hpc automated addition for troika-tb |
troika, asadmin, bundle_image, cfadmin, cq, cwutil, dynamodb_dump, dynamodb_load, elbadmin, fetch_file, glacier, instance_events, kill_instance, launch_instance, list_instances, lss3, mturk, pyami_sendmail, route53, s3put, sdbadmin, taskadmin, vba_extract.py, pulptest, cbc, clp |
|
GITHUB
|
quay.io/biocontainers/trtools |
shpc-registry automated BioContainers addition for trtools |
compareSTR, dumpSTR, mergeSTR, qcSTR, statSTR, test_trtools.sh, trtools_prep_beagle_vcf.sh, cyvcf2, coloredlogs, humanfriendly, fonttools, pyftmerge, pyftsubset, ttx, brotli, shiftBed, annotateBed |
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GITHUB
|
quay.io/biocontainers/trumicount |
shpc-registry automated BioContainers addition for trumicount |
gawk-4.1.3, igawk, trumicount, awk, gawk, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/trust4 |
shpc-registry automated BioContainers addition for trust4 |
BuildDatabaseFa.pl, BuildImgtAnnot.pl, annotator, bam-extractor, fastq-extractor, run-trust4, trust-airr.pl, trust-barcoderep.pl, trust-simplerep.pl, trust-smartseq.pl, trust4, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/truvari |
shpc-registry automated BioContainers addition for truvari |
bwamempy, truvari, cmark, pygmentize, futurize, pasteurize, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10 |
|
GITHUB
|
quay.io/biocontainers/trycycler |
shpc-registry automated BioContainers addition for trycycler |
miniasm, minidot, trycycler, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, muscle, sdust, paftools.js, minimap2, k8 |
|
GITHUB
|
quay.io/biocontainers/tsebra |
singularity registry hpc automated addition for tsebra |
evidence.py, features.py, fix_gtf_ids.py, genome_anno.py, get_longest_isoform.py, overlap_graph.py, rename_gtf.py, tsebra.py, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/tspex |
shpc-registry automated BioContainers addition for tspex |
tspex, runxlrd.py, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/tssar |
shpc-registry automated BioContainers addition for tssar |
TSSAR, TSSAR.bak, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/tssv |
shpc-registry automated BioContainers addition for tssv |
tannotate, tssv, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, f2py3.6, normalizer, 2to3-3.6, idle3.6 |
|
GITHUB
|
quay.io/biocontainers/tsv-utils |
shpc-registry automated BioContainers addition for tsv-utils |
csv2tsv, keep-header, number-lines, tsv-append, tsv-filter, tsv-join, tsv-pretty, tsv-sample, tsv-select, tsv-split, tsv-summarize, tsv-uniq |
|
GITHUB
|
quay.io/biocontainers/tttrlib |
singularity registry hpc automated addition for tttrlib |
tttrlib, rav1e, SvtAv1EncApp, dav1d, tiff2fsspec, tiffcomment, JxrDecApp, JxrEncApp, aomdec, aomenc, cbrunsli, dbrunsli, imagecodecs, zfp, zopfli, zopflipng, lsm2bin, tifffile, imageio_download_bin, imageio_remove_bin, skivi, qconvex, qdelaunay, qhalf, qhull, qvoronoi |
|
GITHUB
|
quay.io/biocontainers/turbocor |
shpc-registry automated BioContainers addition for turbocor |
turbocor, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff |
|
GITHUB
|
quay.io/biocontainers/twobitreader |
shpc-registry automated BioContainers addition for twobitreader |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
|
GITHUB
|
quay.io/biocontainers/twopaco |
shpc-registry automated BioContainers addition for twopaco |
graphdump, twopaco |
|
GITHUB
|
quay.io/biocontainers/tximport-scripts |
shpc-registry automated BioContainers addition for tximport-scripts |
tximport.R, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin, c89, c99 |
|
GITHUB
|
quay.io/biocontainers/typing |
shpc-registry automated BioContainers addition for typing |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/tyto |
singularity registry hpc automated addition for tyto |
csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, normalizer, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/ucsc-cell-browser |
shpc-registry automated BioContainers addition for ucsc-cell-browser |
cbBuild, cbGenes, cbGuessGencode, cbHub, cbImportCellranger, cbImportScanpy, cbImportSeurat, cbMarkerAnnotate, cbScanpy, cbSeurat, cbTool, cbUpgrade, natsort, mirror_server, mirror_server_stop, f2py3.10, h5clear, h5format_convert, h5watch, h5fc, 2to3-3.10, idle3.10 |
|
GITHUB
|
quay.io/biocontainers/udocker |
shpc-registry automated BioContainers addition for udocker |
proot, udocker, udocker.py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
|
GITHUB
|
quay.io/biocontainers/ufcg |
singularity registry hpc automated addition for ufcg |
PF00225_full.blocks.txt, PF00225_seed.blocks.txt, SplicedAlignment.pm, aa2nonred.pl, add_name_to_gff3.pl, aln2wig, aria2c, augustify.py, augustus2browser.pl, augustus2gbrowse.pl, autoAug.pl, autoAugPred.pl, autoAugTrain.pl, bam2wig, bamToWig.py, bedgraph2wig.pl, blat2gbrowse.pl, blat2hints.pl, block2prfl.pl, cdbfasta, cdbyank, cegma2gff.pl, checkParamArchive.pl, checkUTR, cleanDOSfasta.pl, clusterAndSplitGenes.pl, compare_masking.pl, compileSpliceCands, computeFlankingRegion.pl, createAugustusJoblist.pl, del_from_prfl.pl, evalCGP.pl, eval_dualdecomp.pl, eval_multi_gtf.pl, executeTestCGP.py, exonerate2hints.pl, exoniphyDb2hints.pl, extractAnno.py, extractTranscriptEnds.pl, f2py3.11, filter-ppx.pl, filterGenes.pl, filterGenesIn.pl, filterGenesIn_mRNAname.pl, filterGenesOut_mRNAname.pl, filterInFrameStopCodons.pl, filterMaf.pl, filterPSL.pl, filterShrimp.pl, filterSpliceHints.pl, findGffNamesInFasta.pl, findRepetitiveProtSeqs.py, fix_in_frame_stop_codon_genes.py, fix_joingenes_gtf.pl, gbSmallDNA2gff.pl, gbrowse.conf, gbrowseold2gff3.pl, getAnnoFasta.pl, getAnnoFastaFromJoingenes.py, getLinesMatching.pl, getSeq, get_loci_from_gb.pl, gff2gbSmallDNA.pl, gff2ps_mycustom, gffGetmRNA.pl, gp2othergp.pl, gtf2aa.pl, gtf2gff.pl, gth2gtf.pl, hal2maf_split.pl, helpMod.pm, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-cpuid, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, iqtree2, joinPeptides.pl, join_aug_pred.pl, join_mult_hints.pl, load2sqlitedb, lp_solve, lstopo, lstopo-no-graphics, maf2conswig.pl, makeMatchLists.pl, makeUtrTrainingSet.pl, maskNregions.pl, merge_masking.pl, moveParameters.pl, msa2prfl.pl, new_species.pl, opt_init_and_term_probs.pl, optimize_augustus.pl, parseSim4Output.pl, partition_gtf2gb.pl, pasapolyA2hints.pl, peptides2alternatives.pl, peptides2hints.pl, phastconsDB2hints.pl, polyA2hints.pl, pp_simScore, prints2prfl.pl, pslMap.pl, randomSplit.pl, rename_species.pl, retroDB2hints.pl, rmRedundantHints.pl, runAllSim4.pl, samMap.pl, scipiogff2gff.pl, setStopCodonFreqs.pl, simpleFastaHeaders.pl, simplifyFastaHeaders.pl, splitMfasta.pl, split_wiggle.pl, stringtie2fa.py, summarizeACGTcontent.pl, transMap2hints.pl, ufcg, uniquePeptides.pl, utrgff2gbrowse.pl, utrrnaseq, webserver-results.head, webserver-results.tail, weedMaf.pl, wig2hints.pl, wigchoose.pl, writeResultsPage.pl, yaml2gff.1.4.pl, augustus, bam2hints, etraining, fastBlockSearch, filterBam, gtf2bed.pl, homGeneMapping, joingenes, prepareAlign, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, iqtree, twoBitInfo, faToTwoBit, mmseqs, tar, jpackage, config_data, bamtools, cmpfillin, gpmetis, graphchk |
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GITHUB
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quay.io/biocontainers/ultra_bioinformatics |
shpc-registry automated BioContainers addition for ultra_bioinformatics |
StrobeMap, edlib-aligner, slaMEM, uLTRA, gffutils-cli, activate-global-python-argcomplete, get_objgraph, python-argcomplete-check-easy-install-script, python-argcomplete-tcsh, register-python-argcomplete, undill, mapview, mgaps, run-mummer1 |
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GITHUB
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quay.io/biocontainers/ultraheatmap |
shpc-registry automated BioContainers addition for ultraheatmap |
addFeatureToMatrix, alignmentSieve, bamCompare, bamCoverage, bamPEFragmentSize, bigwigCompare, computeGCBias, computeMatrix, computeMatrixOperations, computeOrderedMatrix, correctGCBias, deeptools, estimateReadFiltering, estimateScaleFactor, multiBamSummary, multiBigwigSummary, plotCorrelation, plotCoverage, plotEnrichment, plotFingerprint, plotHeatmap, plotPCA, plotProfile, ultraheatmap, gffutils-cli, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, activate-global-python-argcomplete |
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GITHUB
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quay.io/biocontainers/ultraplex |
shpc-registry automated BioContainers addition for ultraplex |
ultraplex, igzip, pbunzip2, pbzcat, pbzip2, pigz, unpigz, 2to3-3.8, idle3.8, pydoc3.8, python3.8 |
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GITHUB
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quay.io/biocontainers/umap |
shpc-registry automated BioContainers addition for umap |
__init__.py, combine_umaps.py, get_kmers.py, handle_fasta.py, map_bed.py, run_bowtie.py, ubismap.py, uint8_to_bed.py, uint8_to_bed_parallel.py, unify_bowtie.py, bowtie-align-l, bowtie-align-s, bowtie-build-l, bowtie-build-s, bowtie-inspect-l, bowtie-inspect-s, bowtie, bowtie-build, bowtie-inspect, f2py2 |
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GITHUB
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quay.io/biocontainers/umi-transfer |
singularity registry hpc automated addition for umi-transfer |
umi-transfer |
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GITHUB
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quay.io/biocontainers/umi_tools |
shpc-registry automated BioContainers addition for umi_tools |
umi_tools, compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, qwebengine_convert_dict |
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GITHUB
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quay.io/biocontainers/umicollapse |
singularity registry hpc automated addition for umicollapse |
umicollapse, tjbench, jpackage, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, cups-config, ippeveprinter, ipptool, jfr, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jdeps, jar, jarsigner, java, javac, javadoc, javap |
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GITHUB
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quay.io/biocontainers/umis |
shpc-registry automated BioContainers addition for umis |
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GITHUB
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quay.io/biocontainers/umitools |
shpc-registry automated BioContainers addition for umitools |
umi_mark_duplicates, umi_reformat_fastq, umi_reformat_sra_fastq, umi_simulator, umitools, guess-ploidy.py, plot-roh.py, run-roh.pl, color-chrs.pl, plot-vcfstats, bcftools, vcfutils.pl, 2to3-3.6, idle3.6, pydoc3.6 |
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GITHUB
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quay.io/biocontainers/unassigner |
singularity registry hpc automated addition for unassigner |
count_mismatches, pctid_ani_sample, trimragged, unassign, unassigner, vsearch, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
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GITHUB
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quay.io/biocontainers/unfazed |
shpc-registry automated BioContainers addition for unfazed |
unfazed, cyvcf2, coloredlogs, humanfriendly, f2py3.8, htsfile, bgzip, tabix, 2to3-3.8, idle3.8, pydoc3.8 |
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GITHUB
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quay.io/biocontainers/unicycler |
shpc-registry automated BioContainers addition for unicycler |
coronaspades.py, metaplasmidspades.py, metaviralspades.py, miniasm, minidot, rnaviralspades.py, unicycler, racon, rampler, racon_wrapper, cds-mapping-stats, cds-subgraphs, mag-improve, spades-convert-bin-to-fasta, spades-gsimplifier, spades-kmer-estimating, spades-read-filter |
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GITHUB
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quay.io/biocontainers/unifrac-binaries |
singularity registry hpc automated addition for unifrac-binaries |
faithpd, ssu, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
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quay.io/biocontainers/unifrac |
shpc-registry automated BioContainers addition for unifrac |
bp, faithpd, ssu, biom, doesitcache, ipython3, ipython, cygdb, cython, cythonize, py.test, pytest, natsort |
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GITHUB
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quay.io/biocontainers/unikmer |
singularity registry hpc automated addition for unikmer |
unikmer |
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GITHUB
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quay.io/biocontainers/unikseq |
singularity registry hpc automated addition for unikseq |
LINKS, unikseq-Bloom.pl, unikseq.pl, writeBloom.pl |
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GITHUB
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quay.io/biocontainers/unimap |
shpc-registry automated BioContainers addition for unimap |
unimap |
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GITHUB
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quay.io/biocontainers/uniprot |
shpc-registry automated BioContainers addition for uniprot |
seqidtype, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/unitas |
shpc-registry automated BioContainers addition for unitas |
dnapi.py, qual_offset.py, qual_trim.py, seqmap, to_fasta.py, unitas.pl, lwp-download, lwp-dump, lwp-mirror, lwp-request, cpanm, perl5.26.2, podselect, 2to3-3.9, idle3.9, pydoc3.9 |
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GITHUB
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quay.io/biocontainers/unitem |
shpc-registry automated BioContainers addition for unitem |
FragGeneScan, Makefile, Makefile.am, Makefile.in, aclocal.bak, aggregateBinDepths.pl, aggregateContigOverlapsByBin.pl, autoheader.bak, autom4te.bak, automake.bak, autoreconf.bak, autoscan.bak, autoupdate.bak, bazel-scan.py, contigOverlaps, fa2fq, fa2fq.o, filter_blat, filter_blat.o, filter_contigs, filter_contigs.o, filterfa, filterfa.o, fq2fa, fq2fa.o, idba, idba.o, idba_hybrid, idba_hybrid.o, idba_tran, idba_tran.o, idba_tran_test, idba_tran_test.o, idba_ud, idba_ud.o, ifnames.bak, jgi_summarize_bam_contig_depths, merge_depths.pl, metabat, metabat1, metabat2, parallel_blat, parallel_blat.o, parallel_rna_blat, parallel_rna_blat.o, print_graph, print_graph.o, raw_n50, raw_n50.o, run-unittest.py, runMetaBat.sh, run_FragGeneScan.pl, run_MaxBin.pl, sample_reads, sample_reads.o, scaffold, scaffold.o, scan.py, shuffle_reads, shuffle_reads.o, sim_reads, sim_reads.o, sim_reads_tran, sim_reads_tran.o, sort_psl, sort_psl.o, sort_reads, sort_reads.o, split_fa, split_fa.o, split_fq, split_fq.o, split_scaffold, split_scaffold.o, test.o, unitem, validate_blat, validate_blat_parallel, validate_blat_parallel_local, validate_blat_parallel_rna, validate_component, validate_component.o, validate_contigs_blat, validate_contigs_blat.o, validate_contigs_mummer, validate_contigs_mummer.o, validate_mummer, validate_reads_blat, validate_reads_blat.o, validate_rna, validate_rna.o, tar, test, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l |
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GITHUB
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quay.io/biocontainers/unitig-caller |
shpc-registry automated BioContainers addition for unitig-caller |
Bifrost, unitig-caller, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/unitig-counter |
shpc-registry automated BioContainers addition for unitig-counter |
cdbg-ops, gatb-h5dump, unitig-counter |
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GITHUB
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quay.io/biocontainers/unmerge |
shpc-registry automated BioContainers addition for unmerge |
unmerge |
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GITHUB
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quay.io/biocontainers/updio |
singularity registry hpc automated addition for updio |
tab-to-vcf, updio, vcf-haplotypes, fill-aa, fill-an-ac, fill-fs, fill-ref-md5, vcf-annotate, vcf-compare, vcf-concat, vcf-consensus, vcf-contrast, vcf-convert, vcf-fix-newlines, vcf-fix-ploidy, vcf-indel-stats, vcf-isec, vcf-merge, vcf-phased-join, vcf-query, vcf-shuffle-cols, vcf-sort, vcf-stats, vcf-subset, vcf-to-tab, vcf-tstv, vcf-validator, htsfile |
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GITHUB
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quay.io/biocontainers/upimapi |
shpc-registry automated BioContainers addition for upimapi |
firefox, geckodriver, upimapi.py, xml2-config.bak, diamond, normalizer, tqdm, xslt-config, xsltproc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10 |
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GITHUB
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quay.io/biocontainers/uritemplate |
shpc-registry automated BioContainers addition for uritemplate |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/urllib3 |
shpc-registry automated BioContainers addition for urllib3 |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/uropa |
shpc-registry automated BioContainers addition for uropa |
uropa, uropa2gtf.R, uropa_summary.R, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, x86_64-conda-linux-gnu-gfortran.bin |
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GITHUB
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quay.io/biocontainers/usalign |
singularity registry hpc automated addition for usalign |
HwRMSD, MMalign, NWalign, TMscore, USalign, addChainID, cif2pdb, pdb2fasta, pdb2ss, pdb2xyz, pdbAtomName, qTMclust, se, xyz_sfetch, TMalign |
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GITHUB
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quay.io/biocontainers/uscdc-datasets-sars-cov-2 |
shpc-registry automated BioContainers addition for uscdc-datasets-sars-cov-2 |
GenFSGopher.pl, abi-dump.2.11.0, abi-load, abi-load.2, abi-load.2.11.0, align-cache.2.11.0, align-info.2.11.0, bam-load.2.11.0, cache-mgr.2.11.0, ccextract, ccextract.2, ccextract.2.11.0, cg-load.2.11.0, fasterq-dump-orig.2.11.0, fasterq-dump.2.11.0, fastq-dump-orig.2.11.0, fastq-dump.2.11.0, fastq-load, fastq-load.2, fastq-load.2.11.0, helicos-load, helicos-load.2, helicos-load.2.11.0, illumina-dump.2.11.0, illumina-load, illumina-load.2, illumina-load.2.11.0, kar.2.11.0, kdbmeta.2.11.0, kget.2.11.0, latf-load.2.11.0, md5cp.2.11.0, pacbio-load, pacbio-load.2, pacbio-load.2.11.0, pacbio-loadxml, pacbio-loadxml.2, pacbio-loadxml.2.11.0, prefetch-orig.2.11.0, prefetch.2.11.0, rcexplain.2.11.0, read-filter-redact.2.11.0, sam-dump-orig.2.11.0, sam-dump.2.11.0, sff-dump.2.11.0, sff-load, sff-load.2, sff-load.2.11.0, sra-pileup-orig.2.11.0, sra-pileup.2.11.0, sra-sort-cg.2.11.0, sra-sort.2.11.0, sra-stat.2.11.0, srapath-orig.2.11.0, srapath.2.11.0, sratools.2.11.0, srf-load, srf-load.2, srf-load.2.11.0, test-sra.2.11.0, vdb-config.2.11.0, vdb-copy.2.11.0, vdb-decrypt.2.11.0, vdb-diff.2.11.0, vdb-dump-orig.2.11.0, vdb-dump.2.11.0, vdb-encrypt.2.11.0, vdb-lock.2.11.0, vdb-passwd.2.11.0, vdb-unlock.2.11.0, vdb-validate.2.11.0, align-cache.2, md5cp.2, read-filter-redact.2, sra-sort-cg.2, vdb-diff.2, align-cache, fasterq-dump-orig, fastq-dump-orig, md5cp, prefetch-orig |
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GITHUB
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quay.io/biocontainers/usearch |
singularity registry hpc automated addition for usearch |
usearch |
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GITHUB
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quay.io/biocontainers/usher |
shpc-registry automated BioContainers addition for usher |
faToVcf, fido2-assert, fido2-cred, fido2-token, matOptimize, matUtils, ripples, scp, sftp, ssh, ssh-add, ssh-agent, ssh-keygen, ssh-keyscan, sshd, usher, oshCC, oshc++, oshcxx, shmemCC, shmemc++, shmemcxx, oshcc, oshfort, oshmem_info, oshrun |
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GITHUB
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quay.io/biocontainers/ushuffle |
shpc-registry automated BioContainers addition for ushuffle |
ushuffle, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/uvaia |
shpc-registry automated BioContainers addition for uvaia |
uvaia, uvaia_legacy, uvaiaball, uvaiaclust, uvaialign |
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GITHUB
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quay.io/biocontainers/uvp |
shpc-registry automated BioContainers addition for uvp |
GenomeAnalysisTK, UVP, coverage_estimator.py, del_parse.py, fqtools, gatk-register, kraken, kraken-build, kraken-filter, kraken-mpa-report, kraken-report, kraken-translate, lineage_parser.py, parse_annotation.py, prinseq-graphs-noPCA.pl, prinseq-graphs.pl, prinseq-lite.pl, qualimap, raw_vcf_parse.py, resis_parser.py, tab-to-vcf, uvp, varfilter.py, vcf-haplotypes, vcftools, fill-aa, fill-an-ac, fill-fs, fill-ref-md5, vcf-annotate, vcf-compare, vcf-concat, vcf-consensus, vcf-contrast, vcf-convert |
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GITHUB
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quay.io/biocontainers/vadr |
shpc-registry automated BioContainers addition for vadr |
ann_exons_ens.pl, ann_exons_ncbi.pl, ann_exons_up_sql.pl, ann_exons_up_www.pl, ann_feats2ipr.pl, ann_feats2ipr_e.pl, ann_feats_up_sql.pl, ann_feats_up_www2.pl, ann_ipr_www.pl, ann_pdb_cath.pl, ann_pdb_vast.pl, ann_pfam27.pl, ann_pfam28.pl, ann_pfam30.pl, ann_pfam30_tmptbl.pl, ann_pfam_www.pl, ann_upfeats_pfam_www_e.pl, annot_blast_btop2.pl, build-add-blast-db.pl, color_defs.pl, download-vadr-models.sh, esl-alidepair.pl, esl-ssplit.pl, exp_up_ensg.pl, expand_links.pl, expand_uniref50.pl, fasta-trim-terminal-ambigs.pl, fasta36, fastf36, fastm36, fasts36, fastx36, fasty36, ggsearch36, glsearch36, installed-vadr-models.sh, lalign36, lav2plt.pl, lavplt_ps.pl, lavplt_svg.pl, links2sql.pl, m8_btop_msa.pl, m9B_btop_msa.pl, map_db, opts-example-required.pl, opts-example.pl, parse_blast.pl, parse_m9.pl, res2R.pl, run-vadr-local-tests.sh, shuffle_embed.pl, ssearch36, summ_domain_ident.pl, tfastf36, tfastm36, tfasts36, tfastx36, tfasty36, v-annotate.pl, v-build.pl, v-test.pl, vadr-map-model-coords.pl, vadr-map-two-complete-models.pl, vadr-run.sh, cmalign, cmbuild, cmcalibrate, cmconvert, cmemit, cmfetch, cmpress, cmscan, cmsearch, cmstat |
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GITHUB
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quay.io/biocontainers/vafator |
shpc-registry automated BioContainers addition for vafator |
hatchet2bed, multiallelics-filter, vafator, vafator2decifer, cyvcf2, coloredlogs, humanfriendly, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam, bedToIgv |
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GITHUB
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quay.io/biocontainers/valet |
shpc-registry automated BioContainers addition for valet |
valet.py, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, f2py2 |
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GITHUB
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quay.io/biocontainers/validate-fasta-database |
shpc-registry automated BioContainers addition for validate-fasta-database |
validate-fasta-database, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
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GITHUB
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quay.io/biocontainers/validators |
shpc-registry automated BioContainers addition for validators |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/validictory |
shpc-registry automated BioContainers addition for validictory |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/vamb |
shpc-registry automated BioContainers addition for vamb |
concatenate.py, vamb, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
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GITHUB
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quay.io/biocontainers/vamos |
singularity registry hpc automated addition for vamos |
vamos, htsfile, bgzip, tabix |
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GITHUB
|
quay.io/biocontainers/vapor |
shpc-registry automated BioContainers addition for vapor |
vapor.py, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/var-agg |
shpc-registry automated BioContainers addition for var-agg |
var-agg |
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GITHUB
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quay.io/biocontainers/varcode |
singularity registry hpc automated addition for varcode |
epylint, f2py3.11, isort, isort-identify-imports, pyensembl, pylint, pylint-config, pyreverse, symilar, varcode, varcode-genes, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, get_objgraph, undill, vcf_sample_filter.py, vcf_filter.py, vcf_melt, normalizer, python3.1 |
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GITHUB
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quay.io/biocontainers/varda2-client |
shpc-registry automated BioContainers addition for varda2-client |
|
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GITHUB
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quay.io/biocontainers/vardict-java |
shpc-registry automated BioContainers addition for vardict-java |
testsomatic.R, teststrandbias.R, var2vcf_paired.pl, var2vcf_valid.pl, vardict-java, jaotc, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs, pack200, rmic |
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GITHUB
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quay.io/biocontainers/vardict |
shpc-registry automated BioContainers addition for vardict |
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GITHUB
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quay.io/biocontainers/varfish-annotator-cli |
shpc-registry automated BioContainers addition for varfish-annotator-cli |
varfish-annotator, jaotc, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs, pack200, rmic |
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GITHUB
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quay.io/biocontainers/varfish-cli |
shpc-registry automated BioContainers addition for varfish-cli |
varfish-cli, tabulate, jsonschema, normalizer, tqdm, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/varfish-server-worker |
singularity registry hpc automated addition for varfish-server-worker |
varfish-server-worker |
|
GITHUB
|
quay.io/biocontainers/vargeno |
shpc-registry automated BioContainers addition for vargeno |
vargeno |
|
GITHUB
|
quay.io/biocontainers/variabel |
shpc-registry automated BioContainers addition for variabel |
lofreq, lofreq2_call_pparallel.py, lofreq2_indel_ovlp.py, lofreq2_somatic.py, lofreq2_vcfplot.py, variabel, vcf_sample_filter.py, vcf_filter.py, vcf_melt, fasta-sanitize.pl, plot-ampliconstats, f2py3.9, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl |
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GITHUB
|
quay.io/biocontainers/variant_tools |
shpc-registry automated BioContainers addition for variant_tools |
vtools, vtools_report, worker_run, curve_keygen, pt2to3, ptdump, ptrepack, pttree, f2py3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6 |
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GITHUB
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quay.io/biocontainers/variantbam |
shpc-registry automated BioContainers addition for variantbam |
variant |
|
GITHUB
|
quay.io/biocontainers/variantbreak |
shpc-registry automated BioContainers addition for variantbreak |
variantbreak, intersection_matrix.py, intron_exon_reads.py, pbt_plotting_example.py, peak_pie.py, pybedtools, venn_gchart.py, venn_mpl.py, annotate.py, pt2to3, ptdump |
|
GITHUB
|
quay.io/biocontainers/variantmap |
shpc-registry automated BioContainers addition for variantmap |
dash-generate-components, renderer, variantmap_app.py, flask, pt2to3, ptdump, ptrepack, pttree, futurize, pasteurize, f2py3.9, h5clear, h5format_convert |
|
GITHUB
|
quay.io/biocontainers/varifier |
shpc-registry automated BioContainers addition for varifier |
delta2vcf, varifier, vt, tabix++, minimap2.py, plotBfst.R, plotHapLrt.R, plotHaplotypes.R, plotPfst.R, plotSmoothed.R, plotWCfst.R, plotXPEHH.R |
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GITHUB
|
quay.io/biocontainers/varlociraptor |
shpc-registry automated BioContainers addition for varlociraptor |
varlociraptor |
|
GITHUB
|
quay.io/biocontainers/varscan |
shpc-registry automated BioContainers addition for varscan |
varscan, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/vartrix |
shpc-registry automated BioContainers addition for vartrix |
vartrix |
|
GITHUB
|
quay.io/biocontainers/varvamp |
singularity registry hpc automated addition for varvamp |
varvamp, tjbench, f2py3.11, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
|
quay.io/biocontainers/vase |
singularity registry hpc automated addition for vase |
burden_test_vase, coordinates_from_genes, filter_gts, phase_by_transmission, remove_info_fields, vase, vase_reporter, xml2-config.bak, vba_extract.py, natsort, normalizer, xslt-config, xsltproc, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/vawk |
shpc-registry automated BioContainers addition for vawk |
gawk-4.2.1, vawk, awk, gawk, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7 |
|
GITHUB
|
quay.io/biocontainers/vcf-annotator |
shpc-registry automated BioContainers addition for vcf-annotator |
vcf-annotator, vcf_sample_filter.py, vcf_filter.py, vcf_melt, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
|
quay.io/biocontainers/vcf-validator |
singularity registry hpc automated addition for vcf-validator |
vcf_assembly_checker, vcf_validator |
|
GITHUB
|
quay.io/biocontainers/vcf2circos |
singularity registry hpc automated addition for vcf2circos |
kaleido, mathjax-path, pyfiglet, vcf2circos, dash-generate-components, flask, vcf_sample_filter.py, vcf_filter.py, vcf_melt, f2py3.11, ipython3, ipython, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, certutil, nspr-config, nss-config, pk12util, pygmentize, tqdm, brotli, normalizer, python3.1 |
|
GITHUB
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quay.io/biocontainers/vcf2cytosure |
singularity registry hpc automated addition for vcf2cytosure |
vcf2cytosure, cyvcf2, coloredlogs, humanfriendly, xslt-config, xsltproc, htsfile, bgzip, tabix, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/vcf2db |
shpc-registry automated BioContainers addition for vcf2db |
peddy, toolshed, vcf2db.py, cyvcf2, coloredlogs, humanfriendly, f2py3.8, htsfile, bgzip, tabix, 2to3-3.8, idle3.8, pydoc3.8 |
|
GITHUB
|
quay.io/biocontainers/vcf2genome |
shpc-registry automated BioContainers addition for vcf2genome |
vcf2genome, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/vcf2maf-umccr |
singularity registry hpc automated addition for vcf2maf-umccr |
maf2maf.pl, maf2vcf.pl, vcf2maf.pl, vcf2vcf.pl, ace2sam, blast2sam.pl, bowtie2sam.pl, export2sam.pl, interpolate_sam.pl, maq2sam-long, maq2sam-short, md5fa, md5sum-lite, plot-bamstats, psl2sam.pl, sam2vcf.pl, samtools.pl, seq_cache_populate.pl, soap2sam.pl, zoom2sam.pl, novo2sam.pl, wgsim, wgsim_eval.pl, samtools, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/vcf2maf |
shpc-registry automated BioContainers addition for vcf2maf |
crc32, filter_vep.pl, maf2maf.pl, maf2vcf.pl, variant_effect_predictor.pl, vcf2maf.pl, vcf2vcf.pl, vep_convert_cache.pl, vep_install.pl, bp_pairwise_kaks.pl, bp_search2BSML.pl, perl5.22.0, c2ph, pstruct, bp_aacomp.pl, bp_biofetch_genbank_proxy.pl, bp_bioflat_index.pl, bp_biogetseq.pl, bp_blast2tree.pl |
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GITHUB
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quay.io/biocontainers/vcf2parquet |
singularity registry hpc automated addition for vcf2parquet |
vcf2parquet |
|
GITHUB
|
quay.io/biocontainers/vcf2tsvpy |
singularity registry hpc automated addition for vcf2tsvpy |
vcf2tsvpy, cyvcf2, coloredlogs, humanfriendly, f2py3.9, htsfile, bgzip, tabix, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/vcf2variants |
shpc-registry automated BioContainers addition for vcf2variants |
vcf2variants, cyvcf2, coloredlogs, humanfriendly, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m |
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GITHUB
|
quay.io/biocontainers/vcfanno |
shpc-registry automated BioContainers addition for vcfanno |
vcfanno |
|
GITHUB
|
quay.io/biocontainers/vcfbub |
singularity registry hpc automated addition for vcfbub |
vcfbub |
|
GITHUB
|
quay.io/biocontainers/vcfdist |
singularity registry hpc automated addition for vcfdist |
vcfdist, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/vcferr |
singularity registry hpc automated addition for vcferr |
vcferr, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/vcfkit |
shpc-registry automated BioContainers addition for vcfkit |
vk, unidecode, cyvcf2, muscle, coloredlogs, humanfriendly, CA.pm, cacert.pem, index-themes, tabulate, cygdb |
|
GITHUB
|
quay.io/biocontainers/vcflatten |
shpc-registry automated BioContainers addition for vcflatten |
vcflatten, jfr, jaotc, aserver, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, jjs |
|
GITHUB
|
quay.io/biocontainers/vcflib |
shpc-registry automated BioContainers addition for vcflib |
tabix++, bc, dc, abba-baba, bFst, bed2region, bgziptabix, dumpContigsFromHeader, genotypeSummary, hapLrt |
|
GITHUB
|
quay.io/biocontainers/vcfphasesets |
singularity registry hpc automated addition for vcfphasesets |
2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/vcfpy |
shpc-registry automated BioContainers addition for vcfpy |
|
|
GITHUB
|
quay.io/biocontainers/vcfpy2 |
shpc-registry automated BioContainers addition for vcfpy2 |
2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/vcfsamplecompare |
shpc-registry automated BioContainers addition for vcfsamplecompare |
vcfSampleCompare.pl, perl5.26.2, podselect |
|
GITHUB
|
quay.io/biocontainers/vcfsim |
singularity registry hpc automated addition for vcfsim |
demes, msp, mspms, tskit, vcfsim, ipython3, ipython, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, jsonschema, pygmentize |
|
GITHUB
|
quay.io/biocontainers/vcftoolbox |
shpc-registry automated BioContainers addition for vcftoolbox |
vcftoolbox, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/vcftools |
shpc-registry automated BioContainers addition for vcftools |
vcftools, fill-aa, fill-an-ac, fill-fs, fill-ref-md5, vcf-annotate, vcf-compare, vcf-concat, vcf-consensus, vcf-contrast, vcf-convert |
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GITHUB
|
quay.io/biocontainers/vclean |
singularity registry hpc automated addition for vclean |
checkv, vclean, archive-ncbinlp, archive-nihocc, archive-nmcds, archive-pmc, archive-taxonomy, args2slice, asn2ref, blst2gm, cit2pmid, combine-uid-lists, difference-uid-lists, download-pmc, ds2pme, fetch-local, fetch-nmcds, fetch-pmc, fetch-taxonomy, filter-genbank, filter-record, gbf2fsa, gbf2ref, gm2ranges, gm2segs, ini2xml, jsonl2xml |
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GITHUB
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quay.io/biocontainers/vclust |
singularity registry hpc automated addition for vclust |
idle3.13, pydoc3.13, python3.13, python3.13-config, vclust.py |
|
GITHUB
|
quay.io/biocontainers/vcontact2 |
shpc-registry automated BioContainers addition for vcontact2 |
vcontact2, vcontact2_gene2genome, pt2to3, ptdump, ptrepack, pttree, f2py3.8, h5clear, h5format_convert, h5watch, h5fc, gif2h5 |
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GITHUB
|
quay.io/biocontainers/vcontact3 |
singularity registry hpc automated addition for vcontact3 |
archspec, genl-ctrl-list, get_gprof, gi-compile-repository, gi-decompile-typelib, gi-inspect-typelib, idiag-socket-details, nf-ct-add, nf-ct-events, nf-ct-list, nf-exp-add, nf-exp-delete, nf-exp-list, nf-log, nf-monitor, nf-queue, nl-addr-add, nl-addr-delete, nl-addr-list, nl-class-add, nl-class-delete, nl-class-list, nl-classid-lookup, nl-cls-add, nl-cls-delete, nl-cls-list, nl-fib-lookup, nl-link-enslave, nl-link-ifindex2name, nl-link-list, nl-link-name2ifindex, nl-link-release, nl-link-set, nl-link-stats, nl-list-caches, nl-list-sockets, nl-monitor, nl-neigh-add, nl-neigh-delete, nl-neigh-list, nl-neightbl-list, nl-nh-list, nl-pktloc-lookup, nl-qdisc-add, nl-qdisc-delete, nl-qdisc-list, nl-route-add, nl-route-delete, nl-route-get, nl-route-list, nl-rule-list, nl-tctree-list, nl-util-addr, protoc-25.3.0, pyrodigal-gv, vcontact3, gawk-5.3.0, pyrodigal, cpuinfo, gawkbug, dask, aria2c, cmtime, ib_acme, ibv_asyncwatch, ibv_devices, ibv_devinfo, ibv_rc_pingpong, ibv_srq_pingpong, ibv_uc_pingpong, ibv_ud_pingpong, ibv_xsrq_pingpong, mckey, rcopy, rdma_client, rdma_server, rdma_xclient, rdma_xserver, riostream, rping, rstream |
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GITHUB
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quay.io/biocontainers/vdjer |
shpc-registry automated BioContainers addition for vdjer |
vdjer |
|
GITHUB
|
quay.io/biocontainers/vechat |
singularity registry hpc automated addition for vechat |
fpa, vechat, yacrd, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, racon, sdust, paftools.js, minimap2, k8, python3.1 |
|
GITHUB
|
quay.io/biocontainers/velocyto.py |
shpc-registry automated BioContainers addition for velocyto.py |
loompy, velocyto, numba, pycc, mirror_server, mirror_server_stop, fonttools, pyftmerge, pyftsubset, ttx, brotli, fasta-sanitize.pl |
|
GITHUB
|
quay.io/biocontainers/velvet-sc |
shpc-registry automated BioContainers addition for velvet-sc |
shuffleSequences_fasta.pl, shuffleSequences_fastq.pl, velvetg, velveth, perl5.32.1, streamzip |
|
GITHUB
|
quay.io/biocontainers/velvet |
shpc-registry automated BioContainers addition for velvet |
velvetg, velveth |
|
GITHUB
|
quay.io/biocontainers/vembrane |
shpc-registry automated BioContainers addition for vembrane |
vembrane, f2py3.9, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
|
GITHUB
|
quay.io/biocontainers/venndata |
singularity registry hpc automated addition for venndata |
2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config |
|
GITHUB
|
quay.io/biocontainers/verifybamid |
shpc-registry automated BioContainers addition for verifybamid |
|
|
GITHUB
|
quay.io/biocontainers/verifybamid2 |
shpc-registry automated BioContainers addition for verifybamid2 |
verifybamid2, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/verifyidintensity |
shpc-registry automated BioContainers addition for verifyidintensity |
verifyIDintensity |
|
GITHUB
|
quay.io/biocontainers/verkko |
shpc-registry automated BioContainers addition for verkko |
|
|
GITHUB
|
quay.io/biocontainers/verse |
shpc-registry automated BioContainers addition for verse |
verse |
|
GITHUB
|
quay.io/biocontainers/versionix |
singularity registry hpc automated addition for versionix |
versionix, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/verticall |
singularity registry hpc automated addition for verticall |
verticall, tjbench, f2py3.11, py.test, pytest, sdust, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, k8, paftools.js, minimap2, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, opj_compress, opj_decompress, opj_dump, python3.1, jpgicc, linkicc |
|
GITHUB
|
quay.io/biocontainers/veryfasttree |
shpc-registry automated BioContainers addition for veryfasttree |
VeryFastTree |
|
GITHUB
|
quay.io/biocontainers/vg |
shpc-registry automated BioContainers addition for vg |
vg |
|
GITHUB
|
quay.io/biocontainers/vgan |
shpc-registry automated BioContainers addition for vgan |
vgan |
|
GITHUB
|
quay.io/biocontainers/vibrant |
shpc-registry automated BioContainers addition for vibrant |
VIBRANT_annotation.py, VIBRANT_extract_nucleotide.py, VIBRANT_extract_protein.py, VIBRANT_run.py, download-db.sh, prodigal, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev |
|
GITHUB
|
quay.io/biocontainers/viennarna |
shpc-registry automated BioContainers addition for viennarna |
AnalyseDists, AnalyseSeqs, RNAlocmin, RNApvmin, b2ct, ct2db, kinwalker, popt, RNA2Dfold, RNALalifold |
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GITHUB
|
quay.io/biocontainers/viewbs |
shpc-registry automated BioContainers addition for viewbs |
ViewBS, brat2bismark.pl, bsseeker2bismark.pl, demo-getopt-long-subcommand, gff2tab.pl, mer_fig.R, bam2bedgraph, bp_pairwise_kaks, bp_find-blast-matches.pl, t_coffee, baseml, basemlg, chi2, codeml, evolver, infinitesites |
|
GITHUB
|
quay.io/biocontainers/viguno |
singularity registry hpc automated addition for viguno |
viguno |
|
GITHUB
|
quay.io/biocontainers/viloca |
singularity registry hpc automated addition for viloca |
viloca, annot-tsv, htsfile, bgzip, tabix, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
|
GITHUB
|
quay.io/biocontainers/viral-ngs |
shpc-registry automated BioContainers addition for viral-ngs |
GenomeAnalysisTK, Trinity, Trinity-test, assembly.py, bamtools-2.4.0, bmfilter, bmtagger.sh, bmtool, broad_utils.py, coverage-3.5, coverage3, extract_fullseq, fastq-interleave, flake8, gatk-register, illumina.py, install_tools.py, interhost.py, intrahost.py, isnovoindex, kraken, kraken-build, kraken-build.bak, kraken-filter, kraken-filter.bak, kraken-mpa-report, kraken-mpa-report.bak, kraken-report, kraken-report.bak, kraken-translate, kraken-translate.bak, kraken.bak, last-dotplot, last-map-probs, last-merge-batches, last-pair-probs, last-postmask, last-split, last-train, lastal, lastdb, maf-convert, maf-join, maf-sort, maf-swap, metagenomics.py, mvicuna, ncbi.py, novo2paf, novoalign, novoalign-license-register, novoalignCS, novoalignCSMPI, novoalignMPI, novobarcode, novoindex, novomethyl, novope2bed.pl, novorun.pl, novosort, novoutil, parallel-fasta, parallel-fastq, prinseq-graphs-noPCA.pl, prinseq-graphs.pl, prinseq-lite.pl, py.test-3.5, pycodestyle, pyflakes, pylupdate4, pyrcc4, pyuic4, qdoc3, qmlviewer, qt3to4, qtconfig, qttracereplay, read_utils.py, reports.py, srprism, taxon_filter.py, variant_caller, vphaser2, gatk, pbr, ktClassifyBLAST, ktGetContigMagnitudes, ktGetLCA, ktGetLibPath, ktGetTaxIDFromAcc, ktGetTaxInfo, ktImportBLAST, ktImportDiskUsage |
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GITHUB
|
quay.io/biocontainers/viral_consensus |
singularity registry hpc automated addition for viral_consensus |
viral_consensus, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/viralflye |
singularity registry hpc automated addition for viralflye |
split_ref_by_bai_datasize.py, training_script, viralFlye.py, viralcomplete, viralverify, sam_add_rg.pl, update_version.sh, tabix++, bamleftalign, coverage_to_regions.py, fasta_generate_regions.py, freebayes-parallel, generate_freebayes_region_scripts.sh, bc, dc, freebayes, minced, abba-baba, bFst, bed2region, bgziptabix, dumpContigsFromHeader, genotypeSummary, hapLrt, iHS, meltEHH, normalize-iHS, pFst, pVst, permuteGPAT++ |
|
GITHUB
|
quay.io/biocontainers/viralmsa |
singularity registry hpc automated addition for viralmsa |
STAR-avx, STAR-avx2, STAR-plain, STAR-sse3, STAR-sse4.1, STAR-ssse3, STARlong-avx, STARlong-avx2, STARlong-plain, STARlong-sse3, STARlong-sse4.1, STARlong-ssse3, ViralMSA.py, dragen-os, extract_exons.py, extract_splice_sites.py, hisat2, hisat2-align-l, hisat2-align-s, hisat2-build, hisat2-build-l, hisat2-build-s, hisat2-inspect, hisat2-inspect-l, hisat2-inspect-s, hisat2_extract_exons.py, hisat2_extract_snps_haplotypes_UCSC.py, hisat2_extract_snps_haplotypes_VCF.py, hisat2_extract_splice_sites.py, hisat2_read_statistics.py, hisat2_simulate_reads.py, lra, meryl-analyze, meryl-import, meryl-lookup, meryl-simple, ngmlr, position-lookup, split_approx_mappings_in_chunks.py, unimap, wfmash, winnowmap, STAR, STARlong, meryl, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l |
|
GITHUB
|
quay.io/biocontainers/viralverify |
shpc-registry automated BioContainers addition for viralverify |
training_script, viralverify, prodigal, hmmpgmd_shard, easel, esl-mixdchlet, esl-alimanip, esl-alimap, esl-alimask, esl-alimerge, esl-alipid, esl-alirev |
|
GITHUB
|
quay.io/biocontainers/viramp-hub |
singularity registry hpc automated addition for viramp-hub |
scheme-convert, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
|
GITHUB
|
quay.io/biocontainers/virchip |
shpc-registry automated BioContainers addition for virchip |
f2py2, f2py2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, gio-launch-desktop |
|
GITHUB
|
quay.io/biocontainers/virema |
shpc-registry automated BioContainers addition for virema |
Compiler_Module.py, ConfigViReMa.py, ViReMa.py, bowtie, bowtie-build, bowtie-inspect, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/vireosnp |
singularity registry hpc automated addition for vireosnp |
GTbarcode, vireo, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/virheat |
singularity registry hpc automated addition for virheat |
virheat, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
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quay.io/biocontainers/virmet |
shpc-registry automated BioContainers addition for virmet |
aalookup_unit_test, aascan_unit_test, align_format_unit_test, bdbloader_unit_test, bl2seq_unit_test, blast_format_unit_test, blast_services_unit_test, blast_unit_test, blastdb_format_unit_test, blastdiag_unit_test, blastengine_unit_test, blastextend_unit_test, blastfilter_unit_test, blasthits_unit_test, blastinput_unit_test, blastoptions_unit_test, blastsetup_unit_test, delta_unit_test, gapinfo_unit_test, gencode_singleton_unit_test, gene_info_unit_test, hspfilter_besthit_unit_test, hspfilter_culling_unit_test, hspstream_unit_test, linkhsp_unit_test, magicblast_unit_test, msa2pssm_unit_test, ntlookup_unit_test, ntscan_unit_test, optionshandle_unit_test, phiblast_unit_test, prelimsearch_unit_test, prinseq-graphs-noPCA.pl, prinseq-graphs.pl, prinseq-lite.pl, psibl2seq_unit_test, psiblast_iteration_unit_test, psiblast_unit_test, pssmcreate_unit_test, pssmenginefreqratios_unit_test, querydata_unit_test, queryinfo_unit_test, redoalignment_unit_test, remote_blast_unit_test, rps_unit_test, scoreblk_unit_test, search_strategy_unit_test, seqdb_unit_test, seqinfosrc_unit_test, seqsrc_unit_test, setupfactory_unit_test, split_query_unit_test, stat_unit_test, subj_ranges_unit_test, traceback_unit_test, tracebacksearch_unit_test, uniform_search_unit_test, version_reference_unit_test, virmet, writedb_unit_test, xtract.pl, setup-deps.log, setup.sh, xtract.go, test_pcre, sample, seqtk, blastdbcp, gene_info_reader, seqdb_demo, seqdb_perf |
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GITHUB
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quay.io/biocontainers/viroconstrictor |
singularity registry hpc automated addition for viroconstrictor |
AminoExtract, ViroConstrictor, Viroconstrictor, aminoextract, directories.py, markdown-it, presets.py, viroConstrictor, viroconstrictor, workflow.smk, mamba-package, conda2solv, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, bsdcat, bsdcpio, bsdtar, tjbench, conda-env, cph, stone, yte, plac_runner.py, docutils, pulptest, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin |
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GITHUB
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quay.io/biocontainers/viromeqc |
singularity registry hpc automated addition for viromeqc |
fastq_len_filter.py, license.txt, medians.csv, viromeQC.py, metadata_conda_debug.yaml, hwloc-gather-cpuid, hwloc-annotate, hwloc-bind, hwloc-calc, hwloc-compress-dir, hwloc-diff, hwloc-distrib, hwloc-gather-topology, hwloc-info, hwloc-ls, hwloc-patch, hwloc-ps, lstopo, lstopo-no-graphics, test_pcre, diamond, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l |
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GITHUB
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quay.io/biocontainers/virsorter |
shpc-registry automated BioContainers addition for virsorter |
bsdcat, bsdcpio, bsdtar, conda2solv, cookiecutter, dumpsolv, installcheck, mamba, mergesolv, repo2solv, testsolv, virsorter, conda-env, cph, git, git-cvsserver, git-receive-pack, git-shell, git-upload-archive, git-upload-pack, gitk, pulptest |
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GITHUB
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quay.io/biocontainers/virstrain |
shpc-registry automated BioContainers addition for virstrain |
virstrain, virstrain_build, jupyter-trust, jupyter, jupyter-migrate, jupyter-troubleshoot, jsonschema, f2py3.7, chardetect, 2to3-3.7, idle3.7, pydoc3.7 |
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GITHUB
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quay.io/biocontainers/virulencefinder |
singularity registry hpc automated addition for virulencefinder |
download-virulence-db.sh, kma, kma_index, kma_shm, kma_update, virulencefinder.py, tabulate, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl, sort-table, spdi2tbl, split-at-intron, tbl2xml, transmute.Linux |
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GITHUB
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quay.io/biocontainers/virulign |
shpc-registry automated BioContainers addition for virulign |
virulign |
|
GITHUB
|
quay.io/biocontainers/virusrecom |
singularity registry hpc automated addition for virusrecom |
virusrecom, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, tjbench, fonttools, pyftmerge, pyftsubset, ttx, brotli, opj_compress, opj_decompress, opj_dump, jpgicc, linkicc, psicc, tificc, transicc |
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GITHUB
|
quay.io/biocontainers/visceral-evaluatesegmentation |
shpc-registry automated BioContainers addition for visceral-evaluatesegmentation |
EvaluateSegmentation, itkTestDriver, fftw-wisdom, fftw-wisdom-to-conf, fftwf-wisdom, fftwl-wisdom, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif |
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GITHUB
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quay.io/biocontainers/visitor |
shpc-registry automated BioContainers addition for visitor |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/visor |
singularity registry hpc automated addition for visor |
VISOR, badread, pywgsim, plac_runner.py, minimap2.py, jupyter-trust, faidx, jupyter, jupyter-migrate, jupyter-troubleshoot, sdust, paftools.js, minimap2, k8, jsonschema, fonttools, pyftmerge, pyftsubset, ttx, normalizer, brotli, fasta-sanitize.pl, shiftBed, plot-ampliconstats, annotateBed, bamToBed, bamToFastq, bed12ToBed6 |
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GITHUB
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quay.io/biocontainers/vispr |
shpc-registry automated BioContainers addition for vispr |
vispr, flask, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/vitap |
singularity registry hpc automated addition for vitap |
VITAP, VITAP_assignment_20240731.py, VITAP_upd_20240325.py, prodigal-gv, numpy-config, seqkit, blastn_vdb, tblastn_vdb, test_pcre, diamond, edirect.py, filter-columns, fuse-segments, gene2range, tbl2prod, uniq-table, align-columns, blst2tkns, csv2xml, disambiguate-nucleotides, download-ncbi-software, ecommon.sh, find-in-gene, fuse-ranges, hgvs2spdi, json2xml, print-columns, snp2hgvs, snp2tbl |
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GITHUB
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quay.io/biocontainers/vkmz |
shpc-registry automated BioContainers addition for vkmz |
vkmz, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/vmatch |
shpc-registry automated BioContainers addition for vmatch |
Vmatchtrans.pl, chain2dim, cleanpp.sh, matchcluster, mkdna6idx, mkvtree, repfind.pl, upgradeprj.pl, vendian, vmatch, vmatchselect, vmigrate.sh, vseqinfo, vseqselect, vstree2tex, vsubseqselect, conda_build.sh, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/vmd |
shpc-registry automated BioContainers addition for vmd |
vmd |
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GITHUB
|
quay.io/biocontainers/vnl |
shpc-registry automated BioContainers addition for vnl |
|
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GITHUB
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quay.io/biocontainers/voluptuous |
shpc-registry automated BioContainers addition for voluptuous |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/voyager |
singularity registry hpc automated addition for voyager |
voyager-build-cli, voyager-cli, voyager-combine-cli, voyager-debug-index, voyager-monitor, jwebserver, jpackage, cups-config, ippeveprinter, ipptool, hb-info, jfr, tjbench, jdeprscan, jhsdb, jimage, jlink, jmod, jshell, aserver, jdeps, jar, jarsigner, java, javac, javadoc, javap, jcmd, jconsole, jdb |
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GITHUB
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quay.io/biocontainers/vphaser2 |
shpc-registry automated BioContainers addition for vphaser2 |
variant_caller, vphaser2, bamtools |
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GITHUB
|
quay.io/biocontainers/vpolo |
shpc-registry automated BioContainers addition for vpolo |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/vqsr_cnn |
shpc-registry automated BioContainers addition for vqsr_cnn |
conv-template, from-template, theano-cache, theano-nose, freeze_graph, mako-render, tflite_convert, saved_model_cli, toco, toco_from_protos |
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GITHUB
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quay.io/biocontainers/vrhyme |
singularity registry hpc automated addition for vrhyme |
alternative_bins_to_fasta.py, bin_coverage.py, bowtie2_stuff.py, bwa_stuff.py, codon_stuff.py, codon_stuff_threader.py, coverage_stuff.py, coverage_stuff_threader.py, coverage_table_convert.py, derep_stuff.py, distance_stuff.py, extract_stuff.py, extract_unbinned_sequences.py, flag_circular.py, generate_bin_scores.py, kmer_nt_stuff.py, kmer_nt_stuff_threader.py, linclust_stuff.py, link_bin_sequences.py, machine_stuff.py, network_stuff_threader.py, prodigal_stuff.py, read_nt_stuff.py, sam_stuff.py, save_dist_dicts.py, score_stuff.py, sequence_lengths_of_bins.py, test_vRhyme.py, vRhyme, mmseqs, capnp, capnpc, capnpc-c++, capnpc-capnp, mash, gawk-5.1.0, awk, gawk, numba, pycc, prodigal, bowtie2, bowtie2-align-l, bowtie2-align-s, bowtie2-build, bowtie2-build-l, bowtie2-build-s, bowtie2-inspect, bowtie2-inspect-l, bowtie2-inspect-s, qualfa2fq.pl, xa2multi.pl, bwa, idn2 |
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GITHUB
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quay.io/biocontainers/vsclust |
shpc-registry automated BioContainers addition for vsclust |
runVSClust.R, run_vsclust_app.R |
|
GITHUB
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quay.io/biocontainers/vsearch |
shpc-registry automated BioContainers addition for vsearch |
vsearch |
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GITHUB
|
quay.io/biocontainers/vsnp |
shpc-registry automated BioContainers addition for vsnp |
abyss-rresolver-short, abyss-stack-size, cpuinfo, irqtop, lsirq, nsenter, prlimit, sam_add_rg.pl, scriptlive, update_version.sh, vSNP_step1.py, vSNP_step2.py, vsnp_alignment_vcf.py, vsnp_best_reference.py, vsnp_bruc_mlst.py, vsnp_chromosome_reference.py, vsnp_excel_merge_files.py, vsnp_fasta_gbk_gff_by_acc.py, vsnp_fasta_to_snps_table.py, vsnp_fastq_quality.py, vsnp_file_management.py, vsnp_filter_finder.py, vsnp_group_reporter.py, vsnp_html_step2_summary.py, vsnp_merge_vcf_into_fasta.py, vsnp_path_adder.py, vsnp_reference_options.py, vsnp_remove_from_analysis.py, vsnp_spoligotype.py, cal, chmem, choom, chrt, col, colcrt, colrm, column, dmesg, eject |
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GITHUB
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quay.io/biocontainers/vsnp3 |
singularity registry hpc automated addition for vsnp3 |
cairosvg, coronaspades.py, cpuinfo, dask, krona_lca_all.py, metaplasmidspades.py, metaviralspades.py, rnaviralspades.py, sam_add_rg.pl, sourmash, split_ref_by_bai_datasize.py, update_version.sh, vcftools, vsnp3_alignment_vcf.py, vsnp3_annotation.py, vsnp3_assembly.py, vsnp3_best_reference_sourmash.py, vsnp3_bruc_mlst.py, vsnp3_download_fasta_gbk_gff_by_acc.py, vsnp3_excel_merge_files.py, vsnp3_fasta_to_snps_table.py, vsnp3_fastq_stats_seqkit.py, vsnp3_file_setup.py, vsnp3_filter_finder.py, vsnp3_group_on_defining_snps.py, vsnp3_group_reporter.py, vsnp3_html_step2_summary.py, vsnp3_kraken2_wrapper.py, vsnp3_path_adder.py, vsnp3_reference_options.py, vsnp3_remove_from_analysis.py, vsnp3_spoligotype.py, vsnp3_step1.py, vsnp3_step2.py, vsnp3_table_compare.py, vsnp3_vcf_annotation.py, vsnp3_zero_coverage.py, fill-aa, fill-an-ac, fill-fs, fill-ref-md5, vcf-annotate, vcf-compare, vcf-concat, vcf-consensus, vcf-contrast, vcf-convert, vcf-fix-newlines, vcf-fix-ploidy, vcf-indel-stats, vcf-isec, vcf-merge, vcf-phased-join, vcf-query, vcf-shuffle-cols, vcf-sort, vcf-stats, vcf-subset, vcf-to-tab, vcf-tstv, vcf-validator, seqkit |
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GITHUB
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quay.io/biocontainers/vt |
shpc-registry automated BioContainers addition for vt |
vt, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/vtools |
shpc-registry automated BioContainers addition for vtools |
vtools-evaluate, vtools-filter, vtools-gcoverage, vtools-stats, cyvcf2, coloredlogs, humanfriendly, tqdm, f2py3.8, htsfile, bgzip, tabix, 2to3-3.8, idle3.8 |
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GITHUB
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quay.io/biocontainers/vulcan |
shpc-registry automated BioContainers addition for vulcan |
ngmlr, vulcan, bamtools, sdust, paftools.js, minimap2, k8, tqdm, f2py3.8, ace2sam, blast2sam.pl, bowtie2sam.pl |
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GITHUB
|
quay.io/biocontainers/vvv2_display |
singularity registry hpc automated addition for vvv2_display |
convert_tbl2json.py, convert_vcffile_to_readablefile2.py, correct_covdepth_f.py, correct_multicontig_vardict_vcf.py, visualize_coverage_depth.R, visualize_snp_v4.R, vvv2_display.py, hb-info, tjbench, 2to3-3.10, idle3.10, pydoc3.10, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/w4mclassfilter |
shpc-registry automated BioContainers addition for w4mclassfilter |
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GITHUB
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quay.io/biocontainers/w4mclstrpeakpics |
shpc-registry automated BioContainers addition for w4mclstrpeakpics |
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GITHUB
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quay.io/biocontainers/wade |
shpc-registry automated BioContainers addition for wade |
CA.pm, cacert.pem, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras, pm-collect, readme.pdf |
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GITHUB
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quay.io/biocontainers/wally |
shpc-registry automated BioContainers addition for wally |
SvtAv1DecApp, SvtAv1EncApp, aomdec, aomenc, asn1Coding, asn1Decoding, asn1Parser, attr, balsam, esdcompat, ffmpeg, ffprobe, getfattr, h264dec, h264enc, imgcmp, imginfo, jack_alias, jack_bufsize, jack_connect, jack_control, jack_cpu, jack_cpu_load, jack_disconnect, jack_evmon, jack_freewheel, jack_iodelay, jack_latent_client, jack_load, jack_lsp, jack_metro, jack_midi_dump, jack_midi_latency_test, jack_midiseq, jack_midisine, jack_monitor_client, jack_multiple_metro, jack_netsource, jack_property, jack_rec, jack_samplerate, jack_server_control, jack_session_notify, jack_showtime, jack_simdtests, jack_simple_client, jack_simple_session_client, jack_test, jack_thru, jack_transport, jack_unload, jack_wait, jack_zombie, jackd, jasper, jiv, lame, lprodump, lrelease-pro, lupdate-pro, meshdebug, opencv_annotation, opencv_interactive-calibration, opencv_model_diagnostics, opencv_version, opencv_visualisation, opencv_waldboost_detector, p11-kit, p11tool, pa-info, pacat, pacmd, pactl, padsp, pamon, paplay, parec, parecord, pasuspender, pulseaudio, qmlformat, qmltime, qmltyperegistrar, qpaeq, setfattr, setup_vars_opencv4.sh, tracegen, trust, vpxdec, vpxenc, wally, x264, x265, flac, metaflac, sndfile-cmp, sndfile-concat, sndfile-convert, sndfile-deinterleave, sndfile-info, sndfile-interleave, sndfile-metadata-get, sndfile-metadata-set |
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GITHUB
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quay.io/biocontainers/watchdog-wms |
shpc-registry automated BioContainers addition for watchdog-wms |
watchdog-cmd, watchdog-configureExamples, watchdog-createNewModule, watchdog-dependencyTest, watchdog-docuTemplateExtractor, watchdog-downloadModuleMaker, watchdog-formatCondaYaml, watchdog-gui, watchdog-installCondaYaml, watchdog-moduleTest, watchdog-moduleValidator, watchdog-refBookGenerator, watchdog-reportGenerator, watchdog-workflowValidator, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown |
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GITHUB
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quay.io/biocontainers/watchdog |
shpc-registry automated BioContainers addition for watchdog |
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GITHUB
|
quay.io/biocontainers/wbuild |
shpc-registry automated BioContainers addition for wbuild |
wbuild, pulptest, cbc, clp, snakemake, snakemake-bash-completion, tabulate, jupyter-trust, jupyter, jupyter-migrate, jupyter-troubleshoot |
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GITHUB
|
quay.io/biocontainers/wdltool |
shpc-registry automated BioContainers addition for wdltool |
wdltool, easy_install-3.6, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer, idlj |
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GITHUB
|
quay.io/biocontainers/web.py |
shpc-registry automated BioContainers addition for web.py |
smtpd.pyc, easy_install-2.7, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5 |
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GITHUB
|
quay.io/biocontainers/weblogo |
shpc-registry automated BioContainers addition for weblogo |
weblogo, transformseq, dvipdf, eps2eps, gs, gsbj, gsdj, gsdj500, gslj, gslp, gsnd |
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GITHUB
|
quay.io/biocontainers/weeder |
shpc-registry automated BioContainers addition for weeder |
weeder2, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
|
quay.io/biocontainers/wes-service-client |
shpc-registry automated BioContainers addition for wes-service-client |
wes-client, wes-server, avro, schema-salad-doc, schema-salad-tool, csv2rdf, rdf2dot, rdfgraphisomorphism, rdfpipe, rdfs2dot, doesitcache, futurize |
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GITHUB
|
quay.io/biocontainers/wfa2-lib |
singularity registry hpc automated addition for wfa2-lib |
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GITHUB
|
quay.io/biocontainers/wfmash |
shpc-registry automated BioContainers addition for wfmash |
wfmash, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/wg-blimp |
shpc-registry automated BioContainers addition for wg-blimp |
wg-blimp, pulptest, cbc, clp, snakemake, snakemake-bash-completion, tabulate, jupyter-trust, jupyter, jupyter-migrate, jupyter-troubleshoot |
|
GITHUB
|
quay.io/biocontainers/wgatools |
singularity registry hpc automated addition for wgatools |
wgatools |
|
GITHUB
|
quay.io/biocontainers/wgdi |
shpc-registry automated BioContainers addition for wgdi |
divvier, iqtree2, pal2nal.pl, wgdi, readal, statal, trimal, iqtree, FastTreeMP, muscle, FastTree, fasttree, baseml, basemlg |
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GITHUB
|
quay.io/biocontainers/wget |
shpc-registry automated BioContainers addition for wget |
wget, idn2 |
|
GITHUB
|
quay.io/biocontainers/wgfast |
shpc-registry automated BioContainers addition for wgfast |
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GITHUB
|
quay.io/biocontainers/wgs-assembler |
shpc-registry automated BioContainers addition for wgs-assembler |
AtacDriver.py, Catrack, DAM2fasta, DB2fasta, DB2quiva, DBdust, DBrm, DBshow, DBsplit, DBstats, ESTmapper.pl, HPCdaligner, HPCmapper, LAcat, LAcheck, LAmerge, LAshow, LAsort, LAsplit, PBcR, addCNSToStore, addReadsToUnitigs, analyzeBest, analyzePosMap, analyzeScaffolds, asmOutputFasta, asmOutputStatistics, asmToAGP.pl, atac.pl, bam2sam, blasr, bogart, bogus, bogusness, buildPosMap, buildRefContigs, buildUnitigs, ca2ace.pl, caqc.pl, caqc_help.ini, cat-corrects, cat-erates, cgw, cgwDump, chimChe, chimera, classifyMates, classifyMatesApply, classifyMatesPairwise, cleanAtac, cleanPolishes, clumpMaker, coalesceMatches, comparePolishes, computeCoverageStat, configureESTmapper.pl, convert-fasta-to-v2.pl, convertOverlap, convertPolishes, convertSamToCA, convertToAtac, convertToExtent, convertToPBCNS, correct-frags, correct-olaps, correctGaps, correctPacBio, ctgcns, daligner, dazcon, deduplicate, demotePosMap, depthOfPolishes, detectChimera, dumpCloneMiddles, dumpPBRLayoutStore, dumpSingletons, erate-estimate, estimate-mer-threshold, existDB, extendClearRanges, extendClearRangesPartition, extractSequence, extractUnmapped, extractmessages, falcon-bench, falcon-print-routes, falcon_sense, fasta2DAM, fasta2DB, fastaToCA, fastqAnalyze, fastqSample, fastqSimulate, fastqSimulate-sort, fastqToCA, filterEST, filterESTsimple, filterMRNA, filterNULL, filterOverlap, filterPolishes, filtertest, finalTrim, fixPolishesIID, fixUnitigs, fragmentDepth, fragsInVars, frgs2clones, gapShifter, gatekeeper, gatekeeperbench, gkpStoreCreate, gkpStoreDumpFASTQ, greedyFragmentTiling, greedy_layout_to_IUM, happy-clones-span-clumps, headPolishes, heavychains, hitConverter, initialTrim, kmer-mask, leaff, lengthFilter, makeplot.pl, mapMers, mapMers-depth, mappedCoverage, markRepeatUnique, markUniqueUnique, matchExtender, merTrim, merTrimApply, mercy, mergeCounts, mergePolishes, mergeqc.pl, metagenomics_ovl_analyses, mismatchCounter, mt19937ar-test, olap-from-seeds, outputLayout, overlap, overlapInCore, overlapStats, overlapStore, overlapStoreBucketizer, overlapStoreBuild, overlapStoreIndexer, overlapStoreSorter, overlap_partition, overmerry, pacBioToCA, parseSNP, pbdagcon, pbindex, pbindexdump, pbmerge, pbutgcns, pickBestPair, pickBestPolish, pickUniquePolish, plotCoverageVsIdentity, positionDB, projectFeatures, quiva2DB, realignPolishes, removeDuplicate, removeMateOverlap, removeRedundant, remove_fragment, replaceUIDwithName-fastq, replaceUIDwithName-posmap, reportAlignmentDifferences, resolveSurrogates, rewriteCache, runCA, runCA-dedupe, runCA-overlapStoreBuild, runCA.bak, runConcurrently.pl, run_greedy.csh, seagen, seatac, sffToCA, show-corrects, sim4db, simple, simulator, sortHits, sortPolishes, splitUnitigs, statsGenerator, summarizePolishes, terminate, terminator, test-merStream, test-seqCache, test-seqStream, testAtac, tigStore, tracearchiveToCA, tracedb-to-frg.pl, trimFastqByQVWindow, uidclient, uniqPolishes, uniqueFilter, unitigger, upgrade-v8-to-v9, upgrade-v9-to-v10, utg2fasta, utgcns, utgcnsfix, vennPolishes, meryl, easy_install-2.7, jellyfish, perl5.22.0, c2ph, pstruct, uconv, python2, python2.7, idle |
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GITHUB
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quay.io/biocontainers/wgs2ncbi |
shpc-registry automated BioContainers addition for wgs2ncbi |
wgs2ncbi, tbl2asn, idn, perl5.32.1, streamzip |
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GITHUB
|
quay.io/biocontainers/wgsim |
shpc-registry automated BioContainers addition for wgsim |
wgsim, wgsim_eval.pl, perl5.32.1, streamzip |
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GITHUB
|
quay.io/biocontainers/wham |
shpc-registry automated BioContainers addition for wham |
wham, whamg |
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GITHUB
|
quay.io/biocontainers/whatsgnu |
shpc-registry automated BioContainers addition for whatsgnu |
Complete_Reference_selector.py, WhatsGNU_database_customizer.py, WhatsGNU_get_GenBank_genomes.py, WhatsGNU_main.py, WhatsGNU_plotter.py, CA.pm, cacert.pem, index-themes, fetch-extras, go.mod, go.sum, hlp-xtract.txt, index-extras, pm-collect, readme.pdf |
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GITHUB
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quay.io/biocontainers/whatshap |
shpc-registry automated BioContainers addition for whatshap |
whatshap, igzip, pbunzip2, pbzcat, pbzip2, vcf_sample_filter.py, vcf_filter.py, vcf_melt, pigz, unpigz, faidx |
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GITHUB
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quay.io/biocontainers/wheezy.template |
shpc-registry automated BioContainers addition for wheezy.template |
wheezy.template, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/whokaryote |
singularity registry hpc automated addition for whokaryote |
tiara, tiara-test, whokaryote.py, convert-caffe2-to-onnx, convert-onnx-to-caffe2, ninja, tabulate, numba, pycc, prodigal, tqdm, futurize, pasteurize, f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/wiggletools |
shpc-registry automated BioContainers addition for wiggletools |
wiggletools, htsfile, bgzip, tabix |
|
GITHUB
|
quay.io/biocontainers/winnowmap |
shpc-registry automated BioContainers addition for winnowmap |
meryl-analyze, meryl-import, meryl-lookup, meryl-simple, winnowmap, meryl |
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GITHUB
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quay.io/biocontainers/wipertools |
singularity registry hpc automated addition for wipertools |
wipertools, idle3.13, pydoc3.13, python3.13, python3.13-config |
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GITHUB
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quay.io/biocontainers/wise2 |
shpc-registry automated BioContainers addition for wise2 |
dba, dnal, estwise, estwisedb, genewise, genewisedb, promoterwise, psw, pswdb, scanwise, scanwise_server, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config |
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GITHUB
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quay.io/biocontainers/wisecondorx |
shpc-registry automated BioContainers addition for wisecondorx |
WisecondorX, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.10, opj_compress, opj_decompress, opj_dump, 2to3-3.10 |
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GITHUB
|
quay.io/biocontainers/wisestork |
shpc-registry automated BioContainers addition for wisestork |
wisestork, faidx, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7 |
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GITHUB
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quay.io/biocontainers/wkhtmltopdf |
shpc-registry automated BioContainers addition for wkhtmltopdf |
wkhtmltoimage, wkhtmltopdf |
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GITHUB
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quay.io/biocontainers/wlogdate |
shpc-registry automated BioContainers addition for wlogdate |
launch_wLogDate.py, f2py3.10, 2to3-3.10, idle3.10, pydoc3.10, python3.1, python3.10, python3.10-config |
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GITHUB
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quay.io/biocontainers/woltka |
singularity registry hpc automated addition for woltka |
f2py3.11, woltka, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, aec, biom, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif, h5c++, h5copy, h5debug, h5diff, h5import, h5jam, h5ls, h5mkgrp, h5perf_serial, h5redeploy, h5repack, h5repart |
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GITHUB
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quay.io/biocontainers/womtool |
shpc-registry automated BioContainers addition for womtool |
womtool, clhsdb, hsdb, extcheck, java-rmi.cgi, javah, jhat, jsadebugd, native2ascii, policytool, appletviewer |
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GITHUB
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quay.io/biocontainers/workspace |
shpc-registry automated BioContainers addition for workspace |
ws, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
|
quay.io/biocontainers/ws4py |
shpc-registry automated BioContainers addition for ws4py |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/wtdbg |
shpc-registry automated BioContainers addition for wtdbg |
|
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GITHUB
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quay.io/biocontainers/wtdbg2 |
shpc-registry automated BioContainers addition for wtdbg2 |
wtdbg-cns, wtdbg2, wtpoa-cns |
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GITHUB
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quay.io/biocontainers/wtforms-alchemy |
shpc-registry automated BioContainers addition for wtforms-alchemy |
pybabel, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, pyvenv |
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GITHUB
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quay.io/biocontainers/wtforms-components |
shpc-registry automated BioContainers addition for wtforms-components |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/wub |
shpc-registry automated BioContainers addition for wub |
_template_script.py, add_errors.py, annotate_length.py, bam_accuracy.py, bam_alignment_length.py, bam_alignment_qc.py, bam_alignments_compare.py, bam_count_reads.py, bam_cov.py, bam_fill_unaligned.py, bam_frag_coverage.py, bam_gc_vs_qual.py, bam_multi_qc.py, bam_ref_base_coverage.py, bam_ref_tab.py, bam_score_filter.py, bam_soft_clips_tab.py, bias_explorer.py, calculate_coverage.py, compare_genomes_dnadiff.py, compare_genomes_lastal.py, convert_alphabet.py, correlate_counts.py, fasta_to_mock_fastq.py, fastq_qual_tab.py, fastq_time_slice.py, fastq_time_tab.py, fastx_ends_tab.py, fastx_grep.py, fastx_length_tab.py, length_normalise_counts.py, merge_tsvs.py, multi_length_hist.py, pickle_cat.py, plot_counts_correlation.py, plot_gffcmp_stats.py, plot_qualities.py, plot_sequence_properties.py, reads_across_time.py, reads_stats.py, reverse_fastq.py, sequence_filter.py, sequence_subtract.py, simulate_errors.py, simulate_genome.py, simulate_sequences.py, simulate_sequencing_simple.py, split_fastx.py, py.test, pytest, tqdm, f2py3.8, bgzip, tabix, 2to3-3.8, idle3.8, pydoc3.8, python3.8 |
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GITHUB
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quay.io/biocontainers/xatlas |
shpc-registry automated BioContainers addition for xatlas |
xatlas, htsfile, bgzip, tabix |
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GITHUB
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quay.io/biocontainers/xbioc |
shpc-registry automated BioContainers addition for xbioc |
|
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GITHUB
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quay.io/biocontainers/xcftools |
shpc-registry automated BioContainers addition for xcftools |
xcf2png, xcf2pnm, xcfinfo, xcfview |
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GITHUB
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quay.io/biocontainers/xclone |
singularity registry hpc automated addition for xclone |
bsdunzip, datashader, fitsverify, gdal2tiles, gdal2tiles.py, gdal2xyz, gdal2xyz.py, gdal_calc, gdal_calc.py, gdal_edit, gdal_edit.py, gdal_fillnodata, gdal_fillnodata.py, gdal_footprint, gdal_merge, gdal_merge.py, gdal_pansharpen, gdal_pansharpen.py, gdal_polygonize, gdal_polygonize.py, gdal_proximity, gdal_proximity.py, gdal_retile, gdal_retile.py, gdal_sieve, gdal_sieve.py, gdalattachpct, gdalattachpct.py, gdalcompare, gdalcompare.py, gdalmove, gdalmove.py, minigzip, minizip, ogr_layer_algebra, ogr_layer_algebra.py, ogrmerge, ogrmerge.py, ome_zarr, pct2rgb, pct2rgb.py, pyct, pyproj, rav1e, rgb2pct, rgb2pct.py, sozip, torch_shm_manager, xrspatial, SvtAv1EncApp, dav1d, tiff2fsspec, aomdec, aomenc, dask, qconvex, qdelaunay, qhalf, qhull, qvoronoi, rbox, tiffcomment, protoc-25.3.0, JxrDecApp, JxrEncApp, cbrunsli, dbrunsli, imagecodecs, lsm2bin, tifffile, zfp, zopfli, zopflipng, imageio_download_bin |
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GITHUB
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quay.io/biocontainers/xdg |
shpc-registry automated BioContainers addition for xdg |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/xengsort |
singularity registry hpc automated addition for xengsort |
xengsort, f2py3.11, numba, py.test, pytest, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, python3.1 |
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GITHUB
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quay.io/biocontainers/xgboost |
shpc-registry automated BioContainers addition for xgboost |
easy_install-2.7, python2, python2.7, idle, python-config, smtpd.py, tclsh8.5, wish8.5 |
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GITHUB
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quay.io/biocontainers/xhmm |
shpc-registry automated BioContainers addition for xhmm |
xhmm |
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GITHUB
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quay.io/biocontainers/xmatchview |
shpc-registry automated BioContainers addition for xmatchview |
icc2ps, icclink, icctrans, wtpt, xmatchview-conifer.py, xmatchview.py, pilconvert.py, pildriver.py, pilfile.py, pilfont.py, pilprint.py, python2-config, python2.7-config, python2, python2.7, idle |
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GITHUB
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quay.io/biocontainers/xmlbuilder |
shpc-registry automated BioContainers addition for xmlbuilder |
python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py, ncurses5-config, ncursesw5-config |
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GITHUB
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quay.io/biocontainers/xmlstarlet |
shpc-registry automated BioContainers addition for xmlstarlet |
xml, xslt-config, xsltproc |
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GITHUB
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quay.io/biocontainers/xmltramp2 |
shpc-registry automated BioContainers addition for xmltramp2 |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/xopen |
shpc-registry automated BioContainers addition for xopen |
2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
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GITHUB
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quay.io/biocontainers/xpclr |
shpc-registry automated BioContainers addition for xpclr |
xpclr, dask-scheduler, dask-ssh, dask-worker, compile-et.pl, prerr.properties, bokeh, pt2to3, ptdump, ptrepack, pttree |
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GITHUB
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quay.io/biocontainers/xpore |
shpc-registry automated BioContainers addition for xpore |
epylint, isort, isort-identify-imports, pyensembl, pylint, pyreverse, symilar, xpore, xpore-dataprep, xpore-diffmod, mirror_server, mirror_server_stop, chardetect, f2py3.9, h5clear, h5format_convert, h5watch, h5fc, gif2h5, h52gif |
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GITHUB
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quay.io/biocontainers/xpressplot |
shpc-registry automated BioContainers addition for xpressplot |
f2py3.8, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
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quay.io/biocontainers/xs-sim |
shpc-registry automated BioContainers addition for xs-sim |
XS |
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GITHUB
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quay.io/biocontainers/xsd |
shpc-registry automated BioContainers addition for xsd |
xsd, CreateDOMDocument, DOMCount, DOMPrint, EnumVal, MemParse, PParse, PSVIWriter, Redirect, SAX2Count, SAX2Print |
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GITHUB
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quay.io/biocontainers/xsv |
shpc-registry automated BioContainers addition for xsv |
xsv |
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GITHUB
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quay.io/biocontainers/xtail |
shpc-registry automated BioContainers addition for xtail |
2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config, c89, c99 |
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GITHUB
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quay.io/biocontainers/xtandem |
shpc-registry automated BioContainers addition for xtandem |
xtandem |
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GITHUB
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quay.io/biocontainers/xtb |
singularity registry hpc automated addition for xtb |
dftd4, s-dftd3, tblite, xtb |
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GITHUB
|
quay.io/biocontainers/xtea |
shpc-registry automated BioContainers addition for xtea |
wtdbg-cns, wtdbg2, wtpoa-cns, xtea, xtea_hg19, xtea_long, sdust, paftools.js, minimap2, k8, qualfa2fq.pl, xa2multi.pl, bwa, fasta-sanitize.pl, plot-ampliconstats, f2py3.7 |
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GITHUB
|
quay.io/biocontainers/xtensor |
shpc-registry automated BioContainers addition for xtensor |
|
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GITHUB
|
quay.io/biocontainers/xtermcolor |
shpc-registry automated BioContainers addition for xtermcolor |
xtermcolor, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/xunit-wrapper |
shpc-registry automated BioContainers addition for xunit-wrapper |
futurize, pasteurize, 2to3-3.8, idle3.8, pydoc3.8, python3.8, python3.8-config |
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GITHUB
|
quay.io/biocontainers/xxhash |
shpc-registry automated BioContainers addition for xxhash |
2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, pyvenv |
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GITHUB
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quay.io/biocontainers/xxmotif |
shpc-registry automated BioContainers addition for xxmotif |
XXmotif |
|
GITHUB
|
quay.io/biocontainers/xyalign |
shpc-registry automated BioContainers addition for xyalign |
compare_vcfs, explore_thresholds, ldc-build-runtime, ldc-profdata, ldc-prune-cache, ldc2, ldmd2, platypus, plot_count_stats, plot_window_differences, xyalign, sambamba, kmerposition.sh, reformatpb.sh, summarizecoverage.sh, alltoall.sh, analyzesketchresults.sh, comparessu.sh, filtersilva.sh, sketchblacklist2.sh, splitribo.sh |
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GITHUB
|
quay.io/biocontainers/yacht |
singularity registry hpc automated addition for yacht |
codecov, h5tools_test_utils, sourmash, taxonkit, yacht, h5fuse.sh, coverage, screed, biom, 2to3-3.12, idle3.12, pydoc3.12, python3.12, python3.12-config, h5delete, py.test, pytest, tjbench, tqdm, fonttools, pyftmerge, pyftsubset, ttx, brotli, normalizer, h5clear, h5format_convert, h5watch, h5fc, gif2h5 |
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GITHUB
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quay.io/biocontainers/yacrd |
shpc-registry automated BioContainers addition for yacrd |
yacrd |
|
GITHUB
|
quay.io/biocontainers/yaggo |
shpc-registry automated BioContainers addition for yaggo |
yaggo, erb, gem, irb, rake, rdoc, ri, ruby, easy_install-3.5, 2to3-3.5, idle3.5 |
|
GITHUB
|
quay.io/biocontainers/yaha |
shpc-registry automated BioContainers addition for yaha |
yaha |
|
GITHUB
|
quay.io/biocontainers/yahmm |
shpc-registry automated BioContainers addition for yahmm |
cygdb, cython, cythonize, fonttools, pyftmerge, pyftsubset, ttx, brotli, f2py3.7, img2webp |
|
GITHUB
|
quay.io/biocontainers/yahs |
shpc-registry automated BioContainers addition for yahs |
agp_to_fasta, juicer, yahs |
|
GITHUB
|
quay.io/biocontainers/yak |
shpc-registry automated BioContainers addition for yak |
yak |
|
GITHUB
|
quay.io/biocontainers/yamda |
shpc-registry automated BioContainers addition for yamda |
erase_annoying_sequences.py, run_em.py, ninja, faidx, f2py3.6, tqdm, shiftBed, annotateBed, bamToBed, bamToFastq, bed12ToBed6, bedToBam |
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GITHUB
|
quay.io/biocontainers/yamllint |
shpc-registry automated BioContainers addition for yamllint |
yamllint, easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/yanagiba |
shpc-registry automated BioContainers addition for yanagiba |
yanagiba, f2py3.7, 2to3-3.7, idle3.7, pydoc3.7, python3.7, python3.7-config, python3.7m, python3.7m-config, pyvenv-3.7, pyvenv |
|
GITHUB
|
quay.io/biocontainers/yanc |
shpc-registry automated BioContainers addition for yanc |
easy_install-3.6, 2to3-3.6, idle3.6, pydoc3.6, python3.6, python3.6-config, python3.6m, python3.6m-config, pyvenv-3.6, tclsh8.5 |
|
GITHUB
|
quay.io/biocontainers/yapc |
shpc-registry automated BioContainers addition for yapc |
idr, yapc, compile-et.pl, prerr.properties, qdistancefieldgenerator, qmlpreview, qvkgen, certutil, nspr-config, nss-config, pk12util, qwebengine_convert_dict |
|
GITHUB
|
quay.io/biocontainers/yara |
shpc-registry automated BioContainers addition for yara |
yara_indexer, yara_mapper |
|
GITHUB
|
quay.io/biocontainers/yasm |
shpc-registry automated BioContainers addition for yasm |
vsyasm, yasm, ytasm |
|
GITHUB
|
quay.io/biocontainers/yass |
shpc-registry automated BioContainers addition for yass |
yass |
|
GITHUB
|
quay.io/biocontainers/ymp |
shpc-registry automated BioContainers addition for ymp |
|
|
GITHUB
|
quay.io/biocontainers/zagros |
shpc-registry automated BioContainers addition for zagros |
extractDEs, thermo, zagros |
|
GITHUB
|
quay.io/biocontainers/zamp |
singularity registry hpc automated addition for zamp |
apptainer, bsdunzip, cnitool, mksquashfs, run-singularity, scmp_sys_resolver, singularity, sqfscat, sqfstar, unsquashfs, zamp, rst2html, rst2html4, rst2html5, rst2latex, rst2man, rst2odt, rst2pseudoxml, rst2s5, rst2xetex, rst2xml, bsdcat, bsdcpio, bsdtar, numpy-config, yte, plac_runner.py, docutils, pulptest, cbc, clp, snakemake, humanfriendly, tabulate, jupyter-trust, jupyter |
|
GITHUB
|
quay.io/biocontainers/zarp |
singularity registry hpc automated addition for zarp |
email_validator, markdown-it, zarp, stone, yte, plac_runner.py, docutils, f2py3.11, pulptest, grpc_cpp_plugin, grpc_csharp_plugin, grpc_node_plugin, grpc_objective_c_plugin, grpc_php_plugin, grpc_python_plugin, grpc_ruby_plugin, cbc, humanfriendly, clp, snakemake, snakemake-bash-completion, jp.py, 2to3-3.11, idle3.11, pydoc3.11, python3.11, python3.11-config, tabulate |
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GITHUB
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quay.io/biocontainers/zavolan-multiqc-plugins |
shpc-registry automated BioContainers addition for zavolan-multiqc-plugins |
multiqc, cmark, coloredlogs, humanfriendly, markdown_py, pygmentize, futurize, pasteurize, chardetect, f2py3.9 |
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GITHUB
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quay.io/biocontainers/zdb |
singularity registry hpc automated addition for zdb |
nextflow, nextflow.bak, zdb, jpackage, basenc, b2sum, base32, base64, basename, cat, chcon, chgrp, chmod, chown, chroot, cksum, comm, cp, csplit, cut, date, dd, df, dir, dircolors, dirname, du, echo |
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GITHUB
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quay.io/biocontainers/zeroc-ice |
shpc-registry automated BioContainers addition for zeroc-ice |
slice2py, python2-config, python2.7-config, python2, python2.7, idle, python-config, smtpd.py |
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GITHUB
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quay.io/biocontainers/zerone |
shpc-registry automated BioContainers addition for zerone |
zerone |
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GITHUB
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quay.io/biocontainers/zga |
shpc-registry automated BioContainers addition for zga |
checkm, dfast, dfast_file_downloader.py, file_downloader.py, flye, flye-minimap2, flye-modules, flye-samtools, ghostx, mga, miniasm, minidot, nxtrim, sam_add_rg.pl, unicycler, unicycler_align, unicycler_check, unicycler_polish, unicycler_scrub, update_version.sh, zga, filter-table, kmutate.sh, runhmm.sh, spdi2prod, fastp, pilon, kmerposition.sh, reformatpb.sh, rppr, summarizecoverage.sh |
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GITHUB
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quay.io/biocontainers/zgtf |
shpc-registry automated BioContainers addition for zgtf |
gtf2bed12, htseq-count-barcodes, htseq-count, htseq-qa, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9 |
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GITHUB
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quay.io/biocontainers/zifa |
shpc-registry automated BioContainers addition for zifa |
easy_install-3.5, 2to3-3.5, idle3.5, pydoc3.5, python3.5, python3.5-config, python3.5m, python3.5m-config, pyvenv-3.5, tclsh8.5 |
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GITHUB
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quay.io/biocontainers/zmwfilter |
shpc-registry automated BioContainers addition for zmwfilter |
zmwfilter |
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GITHUB
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quay.io/biocontainers/zol |
singularity registry hpc automated addition for zol |
HYPHYMPI, ZOL, axel, clusterHeatmap.R, convertMiniprotGffToGbkAndProt.py, extractBiG-SCAPEclusters.py, fai, findOrthologs.py, gimme_taxa.py, hyphy, listAllGenomesInDirectory.py, ncbi-genome-download, ngd, pal2nal.pl, plotSegments.R, prepTG, processNCBIGenBank.py, pyrodigal, runProdigalAndMakeProperGenbank.py, runRBH, setup_annotation_dbs.py, skani, slclust, splitDiamondResults, splitDiamondResultsForFai, zol, readal, statal, trimal, gunzip, gzexe, gzip, uncompress, zcat, zcmp, zdiff, zegrep, zfgrep, zforce, zgrep, zmore, znew, clm, clmformat, clxdo, mcl, mclblastline, mclcm, mclpipeline, mcx, mcxarray |
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GITHUB
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quay.io/biocontainers/zorro |
shpc-registry automated BioContainers addition for zorro |
zorro, zorro_dist.pl, FastTreeMP, FastTree, fasttree, perl5.32.1, streamzip |
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GITHUB
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quay.io/biocontainers/zpca |
shpc-registry automated BioContainers addition for zpca |
zpca-counts, zpca-tpm, f2py3.9, opj_compress, opj_decompress, opj_dump, 2to3-3.9, idle3.9, pydoc3.9, python3.9, python3.9-config, jpgicc |
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GITHUB
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quay.io/pawsey/cuda-hpc-python |
Base Python images with popular packages for HPC workflows, with CUDA support. |
python, python3 |
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GITHUB
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quay.io/pawsey/hpc-python |
Base Python images with popular packages for HPC workflows. |
python, python3 |
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GITHUB
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quay.io/pawsey/openfoam-org |
OpenFOAM (openfoam.org) images built on top of MPICH. |
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GITHUB
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quay.io/pawsey/openfoam |
OpenFOAM (openfoam.com) images built on top of MPICH. |
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GITHUB
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quay.io/pawsey/pytorch |
Pawsey build of PyTorch for AMD GPUs. |
python, python3, venv, bash |
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GITHUB
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quay.io/pawsey/tensorflow |
Pawsey build of TensorFlow for AMD GPUs. |
python, python3, venv, bash |
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GITHUB
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quay.io/vgteam/vg |
Tools for working with genomic variation graphs. https://github.com/vgteam/vg |
vg |
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GITHUB
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r-base |
R is a system for statistical computation and graphics. |
R, Rscript |
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GITHUB
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rabbitmq |
RabbitMQ is an open source multi-protocol messaging broker. |
rabbitmq-defaults, rabbitmq-diagnostics, rabbitmq-env, rabbitmq-plugins, rabbitmq-queues, rabbitmq-server, rabbitmq-upgrade, rabbitmqctl |
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GITHUB
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redis |
Redis is an open-source, networked, in-memory, key-value data store with optional durability. |
redis-benchmark, redis-check-aof, redis-check-rdb, redis-cli, redis-sentinel, redis-server |
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GITHUB
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rocker/ml-verse |
Machine learning in R. |
R, Rscript, rocker-ml-run, rocker-ml-verse-run, rserver, rserver-pam, rsession, rstudio-server |
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GITHUB
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rocker/ml |
Docker images with R + machine learning libraries (CPU versions). |
R, Rscript, rocker-ml-run, rserver, rserver-pam, rsession, rstudio-server |
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GITHUB
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rocker/r-ver |
Version-stable build of R |
R, Rscript |
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GITHUB
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rocker/rstudio |
Rstudio server image |
R, Rscript, rocker-rstudio-run, rserver, rserver-pam, rsession, rstudio-server |
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GITHUB
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rocker/shiny |
Docker image with R + Shiny. |
rocker-shiny-run, shiny-server |
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GITHUB
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rocker/tidyverse |
Version-stable build of R, rstudio, and R packages |
R, Rscript, rocker-ml-run, rocker-tidyverse-run, rserver, rserver-pam, rsession, rstudio-server |
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GITHUB
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rocm/tensorflow |
Tensorflow with ROCm backend support |
python, python3 |
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GITHUB
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ruby |
Ruby is a dynamic, reflective, object-oriented, general-purpose, open-source programming language. |
bundle, bundler, erb, gem, irb, racc, rake, rbs, rdoc, ri, ruby, typeprof |
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GITHUB
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singularityhub/singularity-deploy |
Example shpc container using Singularity Deploy, build and serve from GitHub releases. |
salad |
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GITHUB
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solr |
Solr is the popular, blazing-fast, open source enterprise search platform built on Apache Lucene™. |
post, postlogs, solr |
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GITHUB
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spack/ubuntu-bionic |
Ubuntu 18.04 with Spack preinstalled. |
sbang, spack, spack-python |
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GITHUB
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tensorflow/tensorflow |
An end-to-end open source platform for machine learning. |
python |
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GITHUB
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tomcat |
Apache Tomcat is an open source implementation of the Java Servlet and JavaServer Pages technologies |
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GITHUB
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uvarc/qiime2 |
QIIME2. Same functionality as the official image but less than half the size. Includes packages Empress and PICRUSt2. |
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GITHUB
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vanessa/salad |
A container all about fork and spoon puns. |
salad |
10432 container modules.