wkpalan/singularity-snpeff-snpsift:v1.0

$ singularity pull shub://wkpalan/singularity-snpeff-snpsift:v1.0

Singularity Recipe

Bootstrap:docker
From:alpine:latest

%post
/bin/sh build.sh
/bin/sh snpsift.sh

%files
build.sh
snpsift.sh

%environment
SNPEFF_VERSION=v4.3p

%labels
Maintainer	kokulapalan@gmail.com

%test
snpEff -version

# =======================
# SnpSift
# =======================
%appenv SnpSift
    BEST_APP=SnpSift
    export BEST_APP

%apphelp SnpSift
    Please see http://snpeff.sourceforge.net/SnpSift.html for help

%apprun SnpSift
    SnpSift "$@"

# =======================
# snpEff
# =======================
%appenv snpEff
    BEST_APP=snpEff
    export BEST_APP

%apphelp snpEff
    Please see http://snpeff.sourceforge.net/index.html for help

%apprun snpEff
    snpEff "$@"

Collection


View on Datalad

Metrics

key value
id /containers/wkpalan-singularity-snpeff-snpsift-v1.0
collection name wkpalan/singularity-snpeff-snpsift
branch master
tag v1.0
commit 33dfac70ac1db58bc9d5d1d0cc8cfcd397383526
version (container hash) 1e0004d7fbaabd86b19030d1ba7ea621
build date 2018-04-17T04:45:24.869Z
size (MB) 412
size (bytes) 183918623
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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