wkpalan/singularity-snpeff-snpsift:latest
$ singularity pull shub://wkpalan/singularity-snpeff-snpsift:latest
Singularity Recipe
Bootstrap:docker
From:alpine:latest
%post
/bin/sh build.sh
/bin/sh snpsift.sh
%files
build.sh
snpsift.sh
%environment
SNPEFF_VERSION=v4.3p
%labels
Maintainer kokulapalan@gmail.com
%test
snpEff -version
# =======================
# SnpSift
# =======================
%appenv SnpSift
BEST_APP=SnpSift
export BEST_APP
%apphelp SnpSift
Please see http://snpeff.sourceforge.net/SnpSift.html for help
%apprun SnpSift
SnpSift "$@"
# =======================
# snpEff
# =======================
%appenv snpEff
BEST_APP=snpEff
export BEST_APP
%apphelp snpEff
Please see http://snpeff.sourceforge.net/index.html for help
%apprun snpEff
snpEff "$@"
Collection
- Name: wkpalan/singularity-snpeff-snpsift
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/wkpalan-singularity-snpeff-snpsift-latest |
collection name | wkpalan/singularity-snpeff-snpsift |
branch | master |
tag | latest |
commit | 33dfac70ac1db58bc9d5d1d0cc8cfcd397383526 |
version (container hash) | 1a802485e8cdff1003d347309a7d2ab1 |
build date | 2021-04-09T10:53:10.491Z |
size (MB) | 412 |
size (bytes) | 183918623 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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