willgpaik/r_aci:inla
$ singularity pull shub://willgpaik/r_aci:inla
Singularity Recipe
Bootstrap: shub
From: willgpaik/r_aci:latest
%setup
%files
%environment
source /opt/rh/devtoolset-8/enable
export PATH=$PATH:/opt/sw/r/bin:/opt/sw/dep/bin
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/sw/dep/lib
export CPATH=$CPATH:/opt/sw/include
%runscript
%post
source /opt/rh/devtoolset-8/enable
export PATH=$PATH:/opt/sw/r/bin
yum -y install udunits2-devel proj-devel proj-epsg proj-nad
yum -y update
mkdir -p /opt/sw/dep
cd /tmp
# Install GDAL
wget https://github.com/OSGeo/gdal/archive/v2.1.0.tar.gz
tar -xf v2.1.0.tar.gz
cd gdal-2.1.0/gdal
./configure --prefix=/opt/sw/dep
make -j 2 && make install
cd /tmp
# Install GEOS
wget http://download.osgeo.org/geos/geos-3.6.2.tar.bz2
tar -xf geos-3.6.2.tar.bz2
cd geos-3.6.2
./configure --prefix=/opt/sw/dep
make -j 2 && make install
cd /tmp
rm -rf v2.1.0.tar.gz gdal-2.1.0 geos-3.6.2.tar.bz2 geos-3.6.2
export PATH=$PATH:/opt/sw/dep/bin
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/sw/dep/lib
export CPATH=$CPATH:/opt/sw/include
R --vanilla -e "install.packages('sf', repos='http://lib.stat.cmu.edu/R/CRAN/')"
R --vanilla -e "install.packages('INLA', repos=c(repo='http://lib.stat.cmu.edu/R/CRAN/', INLA='https://inla.r-inla-download.org/R/stable'), dep=TRUE)"
Collection
- Name: willgpaik/r_aci
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/willgpaik-r_aci-inla |
collection name | willgpaik/r_aci |
branch | master |
tag | inla |
commit | 2fe88d76e3b39fdf4c1d92eb55c573262b60c94c |
version (container hash) | cc228d99f39f0e7f90d83e88f0b84d066bab32bbf306cf06af396cad769e2f9a |
build date | 2019-11-04T15:55:49.292Z |
size (MB) | 2506.0 |
size (bytes) | 1545617408 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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