willgpaik/afni_aci:latest
$ singularity pull shub://willgpaik/afni_aci:latest
Singularity Recipe
Bootstrap: shub
From: willgpaik/centos7_aci
%environment
PATH="/usr/local/bin/:$PATH:/usr/lib64/openmpi/bin/"
LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/usr/lib64/openmpi/lib/"
MPI_ROOT=/usr/lib64/openmpi/
export PATH
export LD_LIBRARY_PATH
export MPI_ROOT
export BOOST_ROOT=/usr/local/
source /opt/rh/devtoolset-8/enable
export R_LIBS=/usr/R:$R_LIBS
export LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH
export PATH=/usr/local/bin:$PATH
export PATH=/usr/abin:$PATH
export LD_LIBRARY_PATH=/usr/lib64:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=/usr/lib:$LD_LIBRARY_PATH
%post
PATH="/usr/local/bin/:$PATH:/usr/lib64/openmpi/bin/"
LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/usr/lib64/openmpi/lib/"
MPI_ROOT=/usr/lib64/openmpi/
export PATH
export LD_LIBRARY_PATH
export MPI_ROOT
export BOOST_ROOT=/usr/local/
source /opt/rh/devtoolset-8/enable
yum -y update
yum -y install tcsh libXp openmotif gsl xorg-x11-fonts-misc \
PyQt4 R-devel netpbm-progs gnome-tweak-tool ed \
libpng12 xorg-x11-server-Xvfb firefox \
mesa-libGLw-devel
mkdir -p /usr/abin
export HOME=/usr
export PATH=/usr/abin:$PATH
cd $HOME
curl -O https://afni.nimh.nih.gov/pub/dist/bin/misc/@update.afni.binaries
tcsh @update.afni.binaries -package linux_centos_7_64 -do_extras
cp $HOME/abin/AFNI.afnirc $HOME/.afnirc
suma -update_env
export R_LIBS=$HOME/R
mkdir $R_LIBS
echo 'export R_LIBS=$HOME/R' >> ~/.bashrc
echo 'setenv R_LIBS ~/R' >> ~/.cshrc
source ~/.bashrc
rPkgsInstall -pkgs ALL
cp $HOME/abin/AFNI.afnirc $HOME/.afnirc
suma -update_env
curl -O https://afni.nimh.nih.gov/pub/dist/edu/data/CD.tgz
tar xvzf CD.tgz
cd CD
tcsh s2.cp.files . ~
cd ..
# https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/background_install/install_instructs/steps_linux_Fed_RH.html#prepare-for-bootcamp
rm CD.tgz
rm -rf CD
afni_system_check.py -check_all
@afni_R_package_install -shiny -circos
@update.afni.binaries -d
Collection
- Name: willgpaik/afni_aci
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/willgpaik-afni_aci-latest |
collection name | willgpaik/afni_aci |
branch | master |
tag | latest |
commit | 8ef4519305a1aff8f932037b18bf20f3950d696b |
version (container hash) | 43f14b87dd00cba270e77f608e6259e232f4460f4eac00a445fbd9edeaeed0fd |
build date | 2021-04-09T19:11:55.187Z |
size (MB) | 3202.0 |
size (bytes) | 6109896704 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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