wezen/singularity:v1
$ singularity pull shub://wezen/singularity:v1
Singularity Recipe
Bootstrap: docker
From: debian:stable
IncludeCmd: yes
%setup
%files
lipmutils/bin/* /usr/local/bin/
lipmutils/corelib /usr/local/lib/
%post
apt update
apt install -y build-essential software-properties-common zlib1g-dev libgomp1
apt-add-repository contrib
apt-add-repository non-free
apt update
apt upgrade -y
apt install -y subversion gawk ghostscript wget fastqc bedtools
# install
cd /tmp/
# glint
wget http://lipm-bioinfo.toulouse.inra.fr/download/glint/glint-1.0.rc12.826_833.tgz
tar xzf glint-1.0.rc12.826_833.tgz
cd glint-1.0.rc12
make all
make install
mv bin/glint /usr/local/bin/
cd .. && rm -rf glint-1.0.rc12.826_833 glint-1.0.rc12.826_833.tgz
apt install -y liberror-perl liburi-encode-perl libswitch-perl
# clean
apt purge -y zlib1g-dev subversion wget build-essential
apt clean && apt autoremove -y
%environment
export LC_ALL=C
export PERL5LIB=/usr/local/lib/corelib
%runscript
"$@"
Collection
- Name: wezen/singularity
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/wezen-singularity-v1 |
collection name | wezen/singularity |
branch | master |
tag | v1 |
commit | 64f33a35742f8918cbc8cac5e82b9dd5f77dfa0c |
version (container hash) | 9db589eb07971de0c39a1c3f7a9df6ee |
build date | 2019-05-16T20:22:33.749Z |
size (MB) | 818 |
size (bytes) | 293085215 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.