vmichals/singularity:cunet

$ singularity pull shub://vmichals/singularity:cunet

Singularity Recipe

BootStrap: docker
From: ubuntu:18.04

# To run in this shell pointing to the data in deepglobe, you can execute
# singularity shell -B /network/tmp1/sankarak/deepglobe/:data superresolution.sif
# from inside the Mila cluster
#
# Note that this recipe can only be built on a machine where you are root, the
# build command is
# shell -B $HOME/conditional_unet:/home $SCRATCH/images/conditional_unet.sif

%post
    apt -y update
    apt -y upgrade
    apt -y install software-properties-common
    apt -y install vim unzip wget sudo
    add-apt-repository ppa:ubuntugis/ubuntugis-unstable
    apt -y update
    apt -y install build-essential libssl-dev libffi-dev python3-dev
    apt -y install libsm6
    apt -y install python3-pip python3-tk
    pip3 install --no-cache-dir numpy opencv-python Pillow
    apt -y install gdal-bin libgdal-dev
    pip3 install --no-cache-dir torch torchvision matplotlib ipython ipdb
    pip3 install --no-cache-dir scikit-learn scikit-image # osgeo
    pip3 install --no-cache-dir tiffile sklearn imutils gpustat pandas pyarrow
    pip3 install --no-cache-dir --global-option=build_ext --global-option="-I/usr/include/gdal" GDAL==`gdal-config --version`


%environment

%runscript

Collection


View on Datalad

Metrics

key value
id /containers/vmichals-singularity-cunet
collection name vmichals/singularity
branch master
tag cunet
commit df5009aa4533a2abac2c122e1320999d2a2990e8
version (container hash) 5ba6cdab0cfc30fa4bfbd6a076a546e4
build date 2019-03-20T20:52:06.723Z
size (MB) 2577
size (bytes) 1074929695
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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