vmichals/singularity:cunet
$ singularity pull shub://vmichals/singularity:cunet
Singularity Recipe
BootStrap: docker
From: ubuntu:18.04
# To run in this shell pointing to the data in deepglobe, you can execute
# singularity shell -B /network/tmp1/sankarak/deepglobe/:data superresolution.sif
# from inside the Mila cluster
#
# Note that this recipe can only be built on a machine where you are root, the
# build command is
# shell -B $HOME/conditional_unet:/home $SCRATCH/images/conditional_unet.sif
%post
apt -y update
apt -y upgrade
apt -y install software-properties-common
apt -y install vim unzip wget sudo
add-apt-repository ppa:ubuntugis/ubuntugis-unstable
apt -y update
apt -y install build-essential libssl-dev libffi-dev python3-dev
apt -y install libsm6
apt -y install python3-pip python3-tk
pip3 install --no-cache-dir numpy opencv-python Pillow
apt -y install gdal-bin libgdal-dev
pip3 install --no-cache-dir torch torchvision matplotlib ipython ipdb
pip3 install --no-cache-dir scikit-learn scikit-image # osgeo
pip3 install --no-cache-dir tiffile sklearn imutils gpustat pandas pyarrow
pip3 install --no-cache-dir --global-option=build_ext --global-option="-I/usr/include/gdal" GDAL==`gdal-config --version`
%environment
%runscript
Collection
- Name: vmichals/singularity
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/vmichals-singularity-cunet |
collection name | vmichals/singularity |
branch | master |
tag | cunet |
commit | df5009aa4533a2abac2c122e1320999d2a2990e8 |
version (container hash) | 5ba6cdab0cfc30fa4bfbd6a076a546e4 |
build date | 2019-03-20T20:52:06.723Z |
size (MB) | 2577 |
size (bytes) | 1074929695 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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