vfonov/minc-toolkit-containers:base
$ singularity pull shub://vfonov/minc-toolkit-containers:base
Singularity Recipe
Bootstrap: debootstrap
OSVersion: xenial
MirrorURL: http://us.archive.ubuntu.com/ubuntu/
# install basic system packages
%post
echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/cran.list
apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9
sed -i 's/$/ universe/' /etc/apt/sources.list
apt-get -y update
apt-get install -y \
bc \
libxi6 \
libxmu6 \
wget \
libjpeg8 \
imagemagick \
perl \
libgl1-mesa-glx \
libglu1-mesa \
r-base r-base-dev \
ed libxml2-dev libcurl4-openssl-dev libssl-dev \
python-pip python-dev libzmq-dev cython python-cffi python-numpy python-scipy python-matplotlib
apt-get autoclean
rm -rf /var/lib/apt/lists/*
# Update R packages
Rscript -e 'update.packages(repos="https://cloud.r-project.org",ask=F)'
# Install additional R packages
Rscript -e 'install.packages(c("lme4","tidyverse","batchtools","Rcpp","rjson","jsonlite","tidyr","shiny","visNetwork","DT"),repos="https://cloud.r-project.org")'
Rscript -e 'install.packages(c("gridBase","data.tree"),repos="https://cloud.r-project.org")'
# scoop
pip install scoop --no-cache-dir
%labels
Maintainer Vladimir S. Fonov
AUTHOR vladimir.fonov@gmail.com
Version 1.0
%help
Help me. I'm in the container.
Collection
- Name: vfonov/minc-toolkit-containers
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/vfonov-minc-toolkit-containers-base |
collection name | vfonov/minc-toolkit-containers |
branch | master |
tag | base |
commit | 8c1a10972cf8a3be6440f534365c67787851149d |
version (container hash) | e1079b7ec2c9ab822139fca14bb1965d |
build date | 2020-07-08T22:11:17.432Z |
size (MB) | 1654 |
size (bytes) | 761143327 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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