vfonov/minc-toolkit-containers:base

$ singularity pull shub://vfonov/minc-toolkit-containers:base

Singularity Recipe

Bootstrap: debootstrap
OSVersion: xenial
MirrorURL: http://us.archive.ubuntu.com/ubuntu/

# install basic system packages
%post
    echo "deb http://cran.rstudio.com/bin/linux/ubuntu xenial/" > /etc/apt/sources.list.d/cran.list 
    apt-key adv --keyserver keyserver.ubuntu.com --recv-keys E084DAB9 
    sed -i 's/$/ universe/' /etc/apt/sources.list 
    apt-get -y update 
    apt-get install -y \
         bc \
         libxi6  \
         libxmu6  \
         wget \
         libjpeg8 \
         imagemagick \
         perl \
         libgl1-mesa-glx \
         libglu1-mesa \
         r-base r-base-dev \
         ed libxml2-dev libcurl4-openssl-dev libssl-dev \
         python-pip python-dev libzmq-dev cython python-cffi python-numpy python-scipy python-matplotlib
    
    apt-get autoclean
    rm -rf /var/lib/apt/lists/*
    
    
    # Update R packages 
    Rscript -e 'update.packages(repos="https://cloud.r-project.org",ask=F)'

    # Install additional R packages
    Rscript -e 'install.packages(c("lme4","tidyverse","batchtools","Rcpp","rjson","jsonlite","tidyr","shiny","visNetwork","DT"),repos="https://cloud.r-project.org")'

    Rscript -e 'install.packages(c("gridBase","data.tree"),repos="https://cloud.r-project.org")'

    # scoop
    pip install scoop --no-cache-dir 

    
%labels
    Maintainer Vladimir S. Fonov
    AUTHOR vladimir.fonov@gmail.com
    Version 1.0
    
%help
    Help me. I'm in the container.

Collection


View on Datalad

Metrics

key value
id /containers/vfonov-minc-toolkit-containers-base
collection name vfonov/minc-toolkit-containers
branch master
tag base
commit 8c1a10972cf8a3be6440f534365c67787851149d
version (container hash) e1079b7ec2c9ab822139fca14bb1965d
build date 2020-07-08T22:11:17.432Z
size (MB) 1654
size (bytes) 761143327
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.