tuxtobin/singularity-freebayes:latest
$ singularity pull shub://tuxtobin/singularity-freebayes:latest
Singularity Recipe
# Install using YUM (CentOS-7)
BootStrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/
Include: yum
# If you want the updates (available at the bootstrap date) to be installed
# inside the container during the bootstrap instead of the General Availability
# point release (7.x) then uncomment the following line
UpdateURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/updates/$basearch/
%help
freebayes is a Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment.
%labels
Maintainer Erik Garrison
Version v1.0
%post
yum -y install git make gcc gcc-c++ wget which bzip2-devel xz-devel zlib-devel
mkdir -p /opt/software
cd /opt/software
git clone --recursive https://github.com/ekg/freebayes.git
cd freebayes
make
make install
Collection
- Name: tuxtobin/singularity-freebayes
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/tuxtobin-singularity-freebayes-latest |
collection name | tuxtobin/singularity-freebayes |
branch | master |
tag | latest |
commit | 56a2411e8badc4d36e19952dcc4bb6c3dbc0982e |
version (container hash) | 1aa2510745a5fee5dea6eec5a1ecbdf5 |
build date | 2020-11-19T15:37:42.147Z |
size (MB) | 1048.0 |
size (bytes) | 371372063 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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