tuxtobin/singularity-freebayes:latest

$ singularity pull shub://tuxtobin/singularity-freebayes:latest

Singularity Recipe

# Install using YUM (CentOS-7)
BootStrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/
Include: yum

# If you want the updates (available at the bootstrap date) to be installed
# inside the container during the bootstrap instead of the General Availability
# point release (7.x) then uncomment the following line
UpdateURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/updates/$basearch/

%help
freebayes is a Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment.
 
%labels
Maintainer Erik Garrison
Version v1.0

%post
yum -y install git make gcc gcc-c++ wget which bzip2-devel xz-devel zlib-devel

mkdir -p /opt/software
cd /opt/software

git clone --recursive https://github.com/ekg/freebayes.git
cd freebayes
make
make install

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key value
id /containers/tuxtobin-singularity-freebayes-latest
collection name tuxtobin/singularity-freebayes
branch master
tag latest
commit 56a2411e8badc4d36e19952dcc4bb6c3dbc0982e
version (container hash) 1aa2510745a5fee5dea6eec5a1ecbdf5
build date 2020-11-19T15:37:42.147Z
size (MB) 1048.0
size (bytes) 371372063
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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