tobsecret/singularity_containers:mutsig

$ singularity pull shub://tobsecret/singularity_containers:mutsig

Singularity Recipe

Bootstrap: docker
From: continuumio/miniconda3:4.6.14

%labels
AUTHOR tobi.schraink@gmail.com

%environment
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# This sets global environment variables for anything run within the container
export PATH="/opt/conda/bin:/usr/local/bin:/usr/bin:/bin:"
unset CONDA_DEFAULT_ENV
export ANACONDA_HOME=/opt/conda

%post
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# This is going to be executed after the base container has been downloaded
export PATH=/opt/conda/bin:$PATH
conda install --yes bioconda::bioconductor-signer=1.8.0 conda-forge::dask=1.2.2 bioconda::tabix=0.2.6 bioconda::bioconductor-somaticsignatures=2.18.0 r::r-argparse=1.1.1 bioconda::samtools=1.9

Collection


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Metrics

key value
id /containers/tobsecret-singularity_containers-mutsig
collection name tobsecret/singularity_containers
branch master
tag mutsig
commit ecb1ce893f5d7aaf4f1c8c6bceec1dfc55b510d5
version (container hash) 99edd24f65baf633ba87f0bf5e34e540
build date 2019-06-25T05:49:30.491Z
size (MB) 3215
size (bytes) 1531506719
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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