tobsecret/singularity_containers:mutsig
$ singularity pull shub://tobsecret/singularity_containers:mutsig
Singularity Recipe
Bootstrap: docker
From: continuumio/miniconda3:4.6.14
%labels
AUTHOR tobi.schraink@gmail.com
%environment
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# This sets global environment variables for anything run within the container
export PATH="/opt/conda/bin:/usr/local/bin:/usr/bin:/bin:"
unset CONDA_DEFAULT_ENV
export ANACONDA_HOME=/opt/conda
%post
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# This is going to be executed after the base container has been downloaded
export PATH=/opt/conda/bin:$PATH
conda install --yes bioconda::bioconductor-signer=1.8.0 conda-forge::dask=1.2.2 bioconda::tabix=0.2.6 bioconda::bioconductor-somaticsignatures=2.18.0 r::r-argparse=1.1.1 bioconda::samtools=1.9
Collection
- Name: tobsecret/singularity_containers
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/tobsecret-singularity_containers-mutsig |
collection name | tobsecret/singularity_containers |
branch | master |
tag | mutsig |
commit | ecb1ce893f5d7aaf4f1c8c6bceec1dfc55b510d5 |
version (container hash) | 99edd24f65baf633ba87f0bf5e34e540 |
build date | 2019-06-25T05:49:30.491Z |
size (MB) | 3215 |
size (bytes) | 1531506719 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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