tobsecret/singularity_containers:latest

$ singularity pull shub://tobsecret/singularity_containers:latest

Singularity Recipe

Bootstrap: docker
From: continuumio/miniconda3:4.6.14

%labels
AUTHOR tobi.schraink@gmail.com

%environment
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# This sets global environment variables for anything run within the container
export PATH="/opt/conda/bin:/usr/local/bin:/usr/bin:/bin:"
unset CONDA_DEFAULT_ENV
export ANACONDA_HOME=/opt/conda

%post
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# This is going to be executed after the base container has been downloaded
export PATH=/opt/conda/bin:$PATH
conda install --yes bioconda::bioconductor-signer=1.8.0 conda-forge::dask=1.2.2 bioconda::tabix=0.2.6 bioconda::bioconductor-somaticsignatures=2.18.0

Collection


View on Datalad

Metrics

key value
id /containers/tobsecret-singularity_containers-latest
collection name tobsecret/singularity_containers
branch master
tag latest
commit 77745d0c51c0155b1b4127b8aa664d19061982b4
version (container hash) 7390be6b2a1c94238d4945fe6a8fe41d
build date 2019-06-07T11:19:42.482Z
size (MB) 3199
size (bytes) 1526845471
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.