thakk/TOBIAS:latest
$ singularity pull shub://thakk/TOBIAS:latest
Singularity Recipe
BootStrap: docker
#From: alpine:3.11.6
From: centos:8
Stage: compile
%post
#echo "@testing http://dl-cdn.alpinelinux.org/alpine/edge/testing" >> /etc/apk/repositories
#apk update
#apk add bash
#apk add git
#apk add build-base
#apk add zlib
#apk add zlib-dev
#apk add bzip2
#apk add bzip2-dev
#apk add xz
#apk add xz-dev
#apk add gcc
#apk add gfortran
#apk add python3
#apk add python3-dev
#apk add py3-scipy
#apk add py3-matplotlib
#apk add lapack
#apk add lapack-dev
#apk add freetype
#ln -s `which python3` /bin/python
dnf -y makecache
dnf -y group install "Development Tools"
dnf -y install --allowerasing hostname which dnf-utils
dnf -y install --allowerasing python3 python3-devel
dnf -y install --allowerasing python3-pip git zlib zlib-devel bzip2 bzip2-devel \
xz xz-devel libcurl libcurl-devel ncurses ncurses-devel \
unzip wget
ln -s /usr/bin/python3 /usr/bin/python
ln -s /usr/bin/pip3 /usr/bin/pip
pip install Cython numpy pandas matplotlib scipy botocore
dnf install -y epel-release
dnf config-manager --set-enabled PowerTools
dnf install -y ImageMagick ImageMagick-devel
pip install wand
%apprun TOBIAS
exec TOBIAS
%appinstall TOBIAS
mkdir /install_src
cd /install_src
git clone https://github.com/arq5x/bedtools2/
cd bedtools2
make -j 8
make install
#pip3 install matplotlib
#pip3 install Cython
pip install gimmemotifs
pip install tobias
%apphelp bedtools
TOBIAS https://github.com/loosolab/TOBIAS
Collection
- Name: thakk/TOBIAS
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/thakk-TOBIAS-latest |
collection name | thakk/TOBIAS |
branch | master |
tag | latest |
commit | 72620fdc2f31e1542dfbabe72d9ca9509fcc1ed2 |
version (container hash) | ede4b4d7fa616796dd36d16f7a587ac9 |
build date | 2020-05-07T08:20:03.857Z |
size (MB) | 2558.0 |
size (bytes) | 1073086495 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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