tgac-vumc/RNA-seq:latest

$ singularity pull shub://tgac-vumc/RNA-seq:latest

Singularity Recipe

Bootstrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-7/7/os/x86_64/
Include: yum

%environment    
    export PATH=/usr/local/bin:$PATH

%post
    ./environment

    yum -y update
    yum -qq -y install curl tar bzip2 git zip
    curl -sSL https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -o /tmp/miniconda.sh
    bash /tmp/miniconda.sh -bfp /usr/local
    conda update conda -y
    
    git clone https://github.com/tgac-vumc/RNA-seq
    conda install mamba -c conda-forge -y
    mamba install -c conda-forge -c bioconda snakemake==5.25.0 subread -y


    rm -rf /tmp/miniconda.sh

Collection


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Metrics

key value
id /containers/tgac-vumc-RNA-seq-latest
collection name tgac-vumc/RNA-seq
branch master
tag latest
commit 46687d759e25538296245c85d5beca6c4c269236
version (container hash) 1f96f720adafe064ee6c32d9efe3537e
build date 2021-02-22T12:43:04.730Z
size (MB) 2448.0
size (bytes) 919171103
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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