tgac-vumc/RNA-seq:latest
$ singularity pull shub://tgac-vumc/RNA-seq:latest
Singularity Recipe
Bootstrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-7/7/os/x86_64/
Include: yum
%environment
export PATH=/usr/local/bin:$PATH
%post
./environment
yum -y update
yum -qq -y install curl tar bzip2 git zip
curl -sSL https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -o /tmp/miniconda.sh
bash /tmp/miniconda.sh -bfp /usr/local
conda update conda -y
git clone https://github.com/tgac-vumc/RNA-seq
conda install mamba -c conda-forge -y
mamba install -c conda-forge -c bioconda snakemake==5.25.0 subread -y
rm -rf /tmp/miniconda.sh
Collection
- Name: tgac-vumc/RNA-seq
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/tgac-vumc-RNA-seq-latest |
collection name | tgac-vumc/RNA-seq |
branch | master |
tag | latest |
commit | 46687d759e25538296245c85d5beca6c4c269236 |
version (container hash) | 1f96f720adafe064ee6c32d9efe3537e |
build date | 2021-02-22T12:43:04.730Z |
size (MB) | 2448.0 |
size (bytes) | 919171103 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.