tgac-vumc/BLADE:latest

$ singularity pull shub://tgac-vumc/BLADE:latest

Singularity Recipe

Bootstrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-7/7/os/x86_64/
Include: yum

%environment    
    export PATH=/usr/local/bin:$PATH

%post
    ./environment

    yum -y update
    yum -qq -y install curl tar bzip2 git zip
    curl -sSL https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -o /tmp/miniconda.sh
    bash /tmp/miniconda.sh -bfp /usr/local
    conda update conda -y
    
    conda install mamba -c conda-forge -y
    mamba install -c conda-forge -c bioconda jupyter numpy numba scikit-learn joblib multiprocess time scipy qgrid seaborn
    pip install -y BLADE-Deconvolution==0.0.4
    jupyter nbextension enable --py --sys-prefix qgrid
    jupyter nbextension enable --py --sys-prefix widgetsnbextension
 


    rm -rf /tmp/miniconda.sh

Collection


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Metrics

key value
id /containers/tgac-vumc-BLADE-latest
collection name tgac-vumc/BLADE
branch master
tag latest
commit 7734dfb49fc3d1296a0ddd39e7ee31fa041c8e92
version (container hash) 92b372245270a944910bf00c2b5af412
build date 2021-03-12T15:20:08.207Z
size (MB) 2930.0
size (bytes) 1135489055
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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