tgac-vumc/BLADE:latest
$ singularity pull shub://tgac-vumc/BLADE:latest
Singularity Recipe
Bootstrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-7/7/os/x86_64/
Include: yum
%environment
export PATH=/usr/local/bin:$PATH
%post
./environment
yum -y update
yum -qq -y install curl tar bzip2 git zip
curl -sSL https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -o /tmp/miniconda.sh
bash /tmp/miniconda.sh -bfp /usr/local
conda update conda -y
conda install mamba -c conda-forge -y
mamba install -c conda-forge -c bioconda jupyter numpy numba scikit-learn joblib multiprocess time scipy qgrid seaborn
pip install -y BLADE-Deconvolution==0.0.4
jupyter nbextension enable --py --sys-prefix qgrid
jupyter nbextension enable --py --sys-prefix widgetsnbextension
rm -rf /tmp/miniconda.sh
Collection
- Name: tgac-vumc/BLADE
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/tgac-vumc-BLADE-latest |
collection name | tgac-vumc/BLADE |
branch | master |
tag | latest |
commit | 7734dfb49fc3d1296a0ddd39e7ee31fa041c8e92 |
version (container hash) | 92b372245270a944910bf00c2b5af412 |
build date | 2021-03-12T15:20:08.207Z |
size (MB) | 2930.0 |
size (bytes) | 1135489055 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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