team113sanger/t113-singularity:r-3.6.0.methylation-1.0.0

$ singularity pull shub://team113sanger/t113-singularity:r-3.6.0.methylation-1.0.0

Singularity Recipe

Bootstrap: shub
From: team113sanger/t113-singularity:r-3.6.0.base-1.0.0
IncludeCmd: no

%help
Help message

%labels
        Maintainer Team113 Wellcome Sanger Institute
        Version v1.0.0
        R_Version 3.6.0

%environment
        export LC_ALL=en_US.UTF-8
        export LANG=en_US.UTF-8

%post

	# Install R packages from bioconductor
	Rscript -e "install.packages('BiocManager', repos='https://www.stats.bris.ac.uk/R/', dependencies=TRUE, clean = TRUE)"
	Rscript -e "BiocManager::install('methylKit')"
  
	# Clean up
	yum clean all && rm -rf /var/cache/yum
	#rm -rf /tmp/${R_VERSION}
	#rm -rf /tmp/install-tl*

Collection


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key value
id /containers/team113sanger-t113-singularity-r-3.6.0.methylation-1.0.0
collection name team113sanger/t113-singularity
branch master
tag r-3.6.0.methylation-1.0.0
commit 4dc2c1f3d6d79f142aeba699005c93a32ced7390
version (container hash) 284dd0d77ca7233a318279a2eac04772
build date 2019-12-09T12:41:31.284Z
size (MB) 1809
size (bytes) 699994143
SIF Download URL (please use pull with shub://)
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