team113sanger/t113-singularity:kallisto__0.46.0__hb6a4e58_0
$ singularity pull shub://team113sanger/t113-singularity:kallisto__0.46.0__hb6a4e58_0
Singularity Recipe
0.46.0__hb6a4e58_0
BootStrap: docker
From: continuumio/miniconda
%runscript
# Execution
SHELL="$(getent passwd $USER | awk -F: '{print $NF}')"
SHELL=${SHELL:-/bin/bash}
if [ $# -eq 0 ]; then
exec $SHELL -l
else
exec "$@"
fi
%environment
export PATH=/opt/conda/bin:${PATH}
%post
apt-get install -y --quiet man-db
/opt/conda/bin/conda update -y conda
/opt/conda/bin/conda update -y --all
/opt/conda/bin/conda install -c anaconda git
git clone https://github.com/team113sanger/t113-conda.git
/opt/conda/bin/conda create -p /opt/conda/envs/kallisto -y --file t113-conda/environments/Conda.kallisto__0.46.0__hb6a4e58_0
/opt/conda/bin/conda clean --all -y
rm -rf t113-conda
echo ". /opt/conda/etc/profile.d/conda.sh" >>$SINGULARITY_ENVIRONMENT
echo "conda activate kallisto" >>$SINGULARITY_ENVIRONMENT
%help
Singularity image for kallisto version 0.46.0 (conda build hb6a4e58_0).
%labels
SHORT_NAME = kallisto
org.label-schema.name = "kallisto__0.46.0__hb6a4e58_0"
org.label-schema.description = "WSI Team113 singularity image of kallisto version 0.46.08 (conda build hb6a4e58_0)"
org.label-schema.schema-version = "1.0"
Collection
- Name: team113sanger/t113-singularity
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/team113sanger-t113-singularity-kallisto__0.46.0__hb6a4e58_0 |
collection name | team113sanger/t113-singularity |
branch | master |
tag | kallisto__0.46.0__hb6a4e58_0 |
commit | 6930ddc8036ff694946888290bbd9652f71e0735 |
version (container hash) | ba49e9417226f3adcd3ec641ff82b78a |
build date | 2019-08-08T09:35:26.011Z |
size (MB) | 804 |
size (bytes) | 253988895 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.