team113sanger/t113-singularity:fqtools__2.0__hf50d5a6_4
$ singularity pull shub://team113sanger/t113-singularity:fqtools__2.0__hf50d5a6_4
Singularity Recipe
2.0
BootStrap: docker
From: continuumio/miniconda
%runscript
# Execution
SHELL="$(getent passwd $USER | awk -F: '{print $NF}')"
SHELL=${SHELL:-/bin/bash}
if [ $# -eq 0 ]; then
exec $SHELL -l
else
exec "$@"
fi
%environment
export PATH=/opt/conda/bin:${PATH}
%post
apt-get install -y --quiet man-db
/opt/conda/bin/conda update -y conda
/opt/conda/bin/conda update -y --all
/opt/conda/bin/conda install -c anaconda git
git clone https://github.com/team113sanger/t113-conda.git
/opt/conda/bin/conda create -p /opt/conda/envs/fqtools -y --file t113-conda/environments/Conda.fqtools__2.0__hf50d5a6_4
/opt/conda/bin/conda clean --all -y
rm -rf t113-conda
echo ". /opt/conda/etc/profile.d/conda.sh" >>$SINGULARITY_ENVIRONMENT
echo "conda activate fqtools" >>$SINGULARITY_ENVIRONMENT
%help
Singularity image for fqtools version 2.0 (conda build hf50d5a6_4).
%labels
SHORT_NAME = fqtools
org.label-schema.name = "fqtools__2.0__hf50d5a6_4"
org.label-schema.description = "WSI Team113 singularity image of fqtools version 2.0 (conda build hf50d5a6_4)"
org.label-schema.schema-version = "1.0"
Collection
- Name: team113sanger/t113-singularity
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/team113sanger-t113-singularity-fqtools__2.0__hf50d5a6_4 |
collection name | team113sanger/t113-singularity |
branch | master |
tag | fqtools__2.0__hf50d5a6_4 |
commit | 52d22568eebb0cf45de47cbb7a5b367be1d89eca |
version (container hash) | 3f0f31894bc36517db04b90c2d4da3a4 |
build date | 2019-06-03T14:19:06.153Z |
size (MB) | 811 |
size (bytes) | 253722655 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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