subinieee/polysolver:latest

$ singularity pull shub://subinieee/polysolver:latest

Singularity Recipe

BootStrap:docker
From: sachet/polysolver:v3

%post

     mkdir /data/
     mv /home/polysolver /usr/local/libexec/polysolver
     mv /home/samtools /usr/local/libexec/samtools
     export PSHOME=/usr/local/libexec/polysolver
     export SAMTOOLS_DIR=/usr/local/libexec/samtools
     export JAVA_DIR=/usr/bin
     export NOVOALIGN_DIR=$PSHOME/binaries

     # IMPORTANT: the below aren't set, I'm not sure where they are inside image
     export GATK_DIR=$PSHOME
     export MUTECT_DIR=$PSHOME
     export STRELKA_DIR=$PSHOME
     chmod 777 -R /usr/local/libexec

Collection


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Metrics

key value
id /containers/subinieee-polysolver-latest
collection name subinieee/polysolver
branch master
tag latest
commit 430f46102184e47b6c9b4ca71bf6af3d424951cb
version (container hash) 6de75d5c22ec54bda83876a03ca0cb24
build date 2019-11-14T16:22:07.119Z
size (MB) 1929.0
size (bytes) 542871583
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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