subinieee/polysolver:latest
$ singularity pull shub://subinieee/polysolver:latest
Singularity Recipe
BootStrap:docker
From: sachet/polysolver:v3
%post
mkdir /data/
mv /home/polysolver /usr/local/libexec/polysolver
mv /home/samtools /usr/local/libexec/samtools
export PSHOME=/usr/local/libexec/polysolver
export SAMTOOLS_DIR=/usr/local/libexec/samtools
export JAVA_DIR=/usr/bin
export NOVOALIGN_DIR=$PSHOME/binaries
# IMPORTANT: the below aren't set, I'm not sure where they are inside image
export GATK_DIR=$PSHOME
export MUTECT_DIR=$PSHOME
export STRELKA_DIR=$PSHOME
chmod 777 -R /usr/local/libexec
Collection
- Name: subinieee/polysolver
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/subinieee-polysolver-latest |
collection name | subinieee/polysolver |
branch | master |
tag | latest |
commit | 430f46102184e47b6c9b4ca71bf6af3d424951cb |
version (container hash) | 6de75d5c22ec54bda83876a03ca0cb24 |
build date | 2019-11-14T16:22:07.119Z |
size (MB) | 1929.0 |
size (bytes) | 542871583 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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