sschmeier/simg-preprocess:201911
$ singularity pull shub://sschmeier/simg-preprocess:201911
Singularity Recipe
Bootstrap: docker
From: continuumio/miniconda3
%labels
AUTHOR s.schmeier@protonmail.com
%environment
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# This sets global environment variables for anything run within the container
export PATH="/opt/conda/bin:/usr/local/bin:/usr/bin:/bin:"
unset CONDA_DEFAULT_ENV
export ANACONDA_HOME=/opt/conda
%post
export PATH=/opt/conda/bin:$PATH
conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge
conda update -n base -c defaults conda
conda install --yes atropos=1.1.22 bbmap=38.71 cutadapt=2.6 fastp=0.20.0 fastqc=0.11.8 flexbar=3.5.0 multiqc=1.7 fastq-screen=0.13.0 seqtk=1.3
# Clean up
conda clean --index-cache --tarballs --packages --yes
# build date
touch /`date -u -Iseconds`
Collection
- Name: sschmeier/simg-preprocess
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/sschmeier-simg-preprocess-201911 |
collection name | sschmeier/simg-preprocess |
branch | master |
tag | 201911 |
commit | 86d5ac4e7d3191d7112647297f5846a1504aba09 |
version (container hash) | 47c2061613c79d79c67c939521723894eb930aeca2d8c8b6e0643a30d43797b8 |
build date | 2020-11-01T12:44:39.614Z |
size (MB) | 656.68359375 |
size (bytes) | 688582656 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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