sschmeier/simg-preprocess:201902

$ singularity pull shub://sschmeier/simg-preprocess:201902

Singularity Recipe

Bootstrap: docker
From: continuumio/miniconda3:4.5.12

%labels
   AUTHOR schmeier@tuta.io

%environment
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# This sets global environment variables for anything run within the container
  export PATH="/opt/conda/bin:/usr/local/bin:/usr/bin:/bin:"
  unset CONDA_DEFAULT_ENV
  export ANACONDA_HOME=/opt/conda


%post
   export PATH=/opt/conda/bin:$PATH
   echo "We add conda channels."
   conda config --add channels defaults
   conda config --add channels conda-forge
   conda config --add channels bioconda
   echo "We install tools."
   conda install --yes snakemake=5.4.2 atropos=1.1.21 bbmap=38.22 cutadapt=1.18 fastp=0.19.5 fastqc=0.11.7 flexbar=3.3.0 multiqc=1.7 
   # Clean up
   conda clean --index-cache --tarballs --packages --yes

Collection


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Metrics

key value
id /containers/sschmeier-simg-preprocess-201902
collection name sschmeier/simg-preprocess
branch master
tag 201902
commit 0f78919f97c92c3ade75c75958b49491e21525a7
version (container hash) bdca9d51e73d1bef04216f2bddfd84b2
build date 2019-02-22T21:13:26.474Z
size (MB) 2564
size (bytes) 923623455
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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