sschmeier/simg-chip:latest

$ singularity pull shub://sschmeier/simg-chip:latest

Singularity Recipe

Bootstrap: docker
From: continuumio/miniconda3:4.5.4

%labels
   AUTHOR schmeier@tuta.io

%environment
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# This sets global environment variables for anything run within the container
  export PATH="/opt/conda/bin:/usr/local/bin:/usr/bin:/bin:"
  unset CONDA_DEFAULT_ENV
  export ANACONDA_HOME=/opt/conda


%post
   export PATH=/opt/conda/bin:$PATH
   echo "We add conda channels and install tools."
   conda config --add channels defaults
   conda config --add channels conda-forge
   conda config --add channels bioconda
   conda install --yes colorama=0.3.9
   conda install --yes snakemake=5.1.4
   conda install --yes bedtools=2.27.1
   conda install --yes scipy=1.1
   conda install --yes mysql=5.7.20
   conda clean --index-cache --tarballs --packages --yes

Collection


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Metrics

key value
id /containers/sschmeier-simg-chip-latest
collection name sschmeier/simg-chip
branch master
tag latest
commit 2a1d537054b5d5481b81a2a811949c88e96fa2d1
version (container hash) ceadcb882a3b5b291ee7e1427f11b8ab
build date 2018-06-19T10:43:42.492Z
size (MB) 2227
size (bytes) 732024863
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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