sschmeier/simg-chip:latest
$ singularity pull shub://sschmeier/simg-chip:latest
Singularity Recipe
Bootstrap: docker
From: continuumio/miniconda3:4.5.4
%labels
AUTHOR schmeier@tuta.io
%environment
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# This sets global environment variables for anything run within the container
export PATH="/opt/conda/bin:/usr/local/bin:/usr/bin:/bin:"
unset CONDA_DEFAULT_ENV
export ANACONDA_HOME=/opt/conda
%post
export PATH=/opt/conda/bin:$PATH
echo "We add conda channels and install tools."
conda config --add channels defaults
conda config --add channels conda-forge
conda config --add channels bioconda
conda install --yes colorama=0.3.9
conda install --yes snakemake=5.1.4
conda install --yes bedtools=2.27.1
conda install --yes scipy=1.1
conda install --yes mysql=5.7.20
conda clean --index-cache --tarballs --packages --yes
Collection
- Name: sschmeier/simg-chip
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/sschmeier-simg-chip-latest |
collection name | sschmeier/simg-chip |
branch | master |
tag | latest |
commit | 2a1d537054b5d5481b81a2a811949c88e96fa2d1 |
version (container hash) | ceadcb882a3b5b291ee7e1427f11b8ab |
build date | 2018-06-19T10:43:42.492Z |
size (MB) | 2227 |
size (bytes) | 732024863 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.