sschmeier/metafunc-container:0.0.8

$ singularity pull shub://sschmeier/metafunc-container:0.0.8

Singularity Recipe

Bootstrap: docker
From: continuumio/miniconda3

%labels
   AUTHOR s.schmeier@pm.me

%environment
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# This sets global environment variables for anything run within the container
  export PATH="/opt/conda/bin:/usr/local/bin:/usr/bin:/bin:"
  unset CONDA_DEFAULT_ENV
  export ANACONDA_HOME=/opt/conda

%post
   export PATH=/opt/conda/bin:$PATH
   echo "We add conda channels."
   conda config --add channels defaults
   conda config --add channels bioconda
   conda config --add channels conda-forge
   echo "We install tools."
   conda install --yes kaiju=1.7.3 taxonkit=0.3.0 sqlite=3.30.1 pandas goatools=0.9.9 bbmap=38.75 fastp=0.20.0 STAR=2.7.3a subread=2.0.0 scipy numpy
   conda clean --index-cache --tarballs --packages --yes

Collection


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Metrics

key value
id /containers/sschmeier-metafunc-container-0.0.8
collection name sschmeier/metafunc-container
branch master
tag 0.0.8
commit 87896ab311528ed7ec2553a956e5477ebb99b6b6
version (container hash) 709139a3e57f6c9362d1f235a973b05e57fe831e14b83387bdd05aaef8f3603e
build date 2020-08-31T03:22:17.979Z
size (MB) 564.18359375
size (bytes) 591589376
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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