sschmeier/metafunc-container:0.0.7

$ singularity pull shub://sschmeier/metafunc-container:0.0.7

Singularity Recipe

Bootstrap: docker
From: continuumio/miniconda3

%labels
   AUTHOR s.schmeier@pm.me

%environment
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# This sets global environment variables for anything run within the container
  export PATH="/opt/conda/bin:/usr/local/bin:/usr/bin:/bin:"
  unset CONDA_DEFAULT_ENV
  export ANACONDA_HOME=/opt/conda

%post
   export PATH=/opt/conda/bin:$PATH
   echo "We add conda channels."
   conda config --add channels defaults
   conda config --add channels bioconda
   conda config --add channels conda-forge
   echo "We install tools."
   conda install --yes kaiju=1.7.3 taxonkit=0.3.0 sqlite=3.30.1 pandas goatools=0.9.9 bbmap=38.75 fastp=0.20.0 STAR=2.7.3a subread=2.0.0
   conda clean --index-cache --tarballs --packages --yes

Collection


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Metrics

key value
id /containers/sschmeier-metafunc-container-0.0.7
collection name sschmeier/metafunc-container
branch master
tag 0.0.7
commit 1def6be43406a70924eae7a2135d0c1f39bd3d34
version (container hash) b0e3fded261e78223517fb6659b4a70386e6ab9f301632304b01c49bd6a9573f
build date 2020-03-26T23:14:08.117Z
size (MB) 564.27734375
size (bytes) 591687680
SIF Download URL (please use pull with shub://)
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