sschmeier/metafunc-container:0.0.6

$ singularity pull shub://sschmeier/metafunc-container:0.0.6

Singularity Recipe

Bootstrap: docker
From: continuumio/miniconda3

%labels
   AUTHOR s.schmeier@pm.me

%environment
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# This sets global environment variables for anything run within the container
  export PATH="/opt/conda/bin:/usr/local/bin:/usr/bin:/bin:"
  unset CONDA_DEFAULT_ENV
  export ANACONDA_HOME=/opt/conda

%post
   export PATH=/opt/conda/bin:$PATH
   echo "We add conda channels."
   conda config --add channels defaults
   conda config --add channels bioconda
   conda config --add channels conda-forge
   echo "We install tools."
   conda install --yes kaiju=1.7.3 taxonkit=0.3.0 sqlite=3.30.1 pandas goatools=0.9.9 bbmap=38.75 fastp=0.20.0 STAR=2.7.3a
   conda clean --index-cache --tarballs --packages --yes

Collection


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Metrics

key value
id /containers/sschmeier-metafunc-container-0.0.6
collection name sschmeier/metafunc-container
branch master
tag 0.0.6
commit bdde9021faaf7729721053ccf5228ef6b3061151
version (container hash) 504e5efdc68bdffb3881a29a07d85f6f3d2d8cc0ddf8e422e816d24416882a2f
build date 2020-03-15T21:06:03.898Z
size (MB) 533.97265625
size (bytes) 559910912
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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