sschmeier/biotools:01

$ singularity pull shub://sschmeier/biotools:01

Singularity Recipe

Bootstrap: docker
From: continuumio/miniconda3:4.4.10

%labels
   AUTHOR schmeier@tuta.io

%environment
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# This sets global environment variables for anything run within the container
  export PATH="/opt/conda/bin:/usr/local/bin:/usr/bin:/bin:"
  unset CONDA_DEFAULT_ENV
  export ANACONDA_HOME=/opt/conda


%post
   export PATH=/opt/conda/bin:$PATH
   echo "We add conda channels."
   conda config --add channels defaults
   conda config --add channels conda-forge
   conda config --add channels bioconda
   echo "We install tools."
   conda install --yes bwa=0.7.15
   conda install --yes sickle-trim=1.33
   conda install --yes subread=1.6.1
   conda install --yes samtools=1.8
   conda install --yes sra-tools=2.8.2=0
   conda clean --index-cache --tarballs --packages --yes

Collection


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Metrics

key value
id /containers/sschmeier-biotools-01
collection name sschmeier/biotools
branch master
tag 01
commit b44096ac7323ec8d8dfa5d50d0a76f9985633158
version (container hash) 03d0fd84a36e504b153f5ba1e262e69f
build date 2018-06-09T14:17:50.088Z
size (MB) 1106
size (bytes) 414863391
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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