sschmeier/biotools:01
$ singularity pull shub://sschmeier/biotools:01
Singularity Recipe
Bootstrap: docker
From: continuumio/miniconda3:4.4.10
%labels
AUTHOR schmeier@tuta.io
%environment
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
# This sets global environment variables for anything run within the container
export PATH="/opt/conda/bin:/usr/local/bin:/usr/bin:/bin:"
unset CONDA_DEFAULT_ENV
export ANACONDA_HOME=/opt/conda
%post
export PATH=/opt/conda/bin:$PATH
echo "We add conda channels."
conda config --add channels defaults
conda config --add channels conda-forge
conda config --add channels bioconda
echo "We install tools."
conda install --yes bwa=0.7.15
conda install --yes sickle-trim=1.33
conda install --yes subread=1.6.1
conda install --yes samtools=1.8
conda install --yes sra-tools=2.8.2=0
conda clean --index-cache --tarballs --packages --yes
Collection
- Name: sschmeier/biotools
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/sschmeier-biotools-01 |
collection name | sschmeier/biotools |
branch | master |
tag | 01 |
commit | b44096ac7323ec8d8dfa5d50d0a76f9985633158 |
version (container hash) | 03d0fd84a36e504b153f5ba1e262e69f |
build date | 2018-06-09T14:17:50.088Z |
size (MB) | 1106 |
size (bytes) | 414863391 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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