sghignone/TransDecoder:latest
$ singularity pull shub://sghignone/TransDecoder:latest
Singularity Recipe
Bootstrap: docker
From: continuumio/miniconda3
%help
Container with Brian Haas' TransDecoder, which identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.
This installation is based on bioconda transdecoder 5.5.0
%labels
author Stefano Ghignone
maintainer sghignone
name TransDecoder
version 5.5.0
%post
#SET CONDA ENVIRONMENT
export PATH=/opt/conda/bin:${PATH}
conda update -y conda
conda update -n base -c defaults conda
conda config --add channels conda-forge && \
conda config --add channels bioconda && \
conda config --add channels default
#INSTALL SOFTWARE
conda install -c bioconda transdecoder && conda clean -a
Collection
- Name: sghignone/TransDecoder
- License: GNU General Public License v3.0
View on Datalad
Metrics
key | value |
---|---|
id | /containers/sghignone-TransDecoder-latest |
collection name | sghignone/TransDecoder |
branch | main |
tag | latest |
commit | 9a4002cc9a1e1df738f4bc4957014bb51ce2e847 |
version (container hash) | 5adea192cea348f732656fdec42870dc |
build date | 2021-02-05T16:22:27.751Z |
size (MB) | 738.0 |
size (bytes) | 230543391 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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