sghignone/TransDecoder:latest

$ singularity pull shub://sghignone/TransDecoder:latest

Singularity Recipe

Bootstrap: docker
From: continuumio/miniconda3

%help
	Container with Brian Haas' TransDecoder, which identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.
	This installation is based on bioconda transdecoder 5.5.0

%labels
        author Stefano Ghignone
        maintainer sghignone
        name TransDecoder
        version 5.5.0

%post
        #SET CONDA ENVIRONMENT
        export PATH=/opt/conda/bin:${PATH}
	conda update -y conda
        conda update -n base -c defaults conda
        conda config --add channels conda-forge && \
        conda config --add channels bioconda && \
        conda config --add channels default
        #INSTALL SOFTWARE
        conda install -c bioconda transdecoder  && conda clean -a

Collection


View on Datalad

Metrics

key value
id /containers/sghignone-TransDecoder-latest
collection name sghignone/TransDecoder
branch main
tag latest
commit 9a4002cc9a1e1df738f4bc4957014bb51ce2e847
version (container hash) 5adea192cea348f732656fdec42870dc
build date 2021-02-05T16:22:27.751Z
size (MB) 738.0
size (bytes) 230543391
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.