scrim-network/container-dev:singularity

$ singularity pull shub://scrim-network/container-dev:singularity

Singularity Recipe

# Last modified 25 November 2018 by Robert Nicholas <ren10@psu.edu>.

BootStrap: debootstrap
OSVersion: stretch
MirrorURL: http://ftp.us.debian.org/debian/


%runscript

    exec /bin/bash "$@"


%environment

    export PS1="\n[singularity:$SINGULARITY_CONTAINER] \w \$ "


%post

    # fix package sources
    echo "deb http://ftp.debian.org/debian stretch main contrib non-free" > /etc/apt/sources.list
    echo "deb http://ftp.debian.org/debian stretch-backports main contrib non-free" >> /etc/apt/sources.list
    echo "deb http://deb.debian.org/debian-security/ stretch/updates main contrib non-free" >> /etc/apt/sources.list
    echo "deb http://deb.debian.org/debian stretch-updates main contrib non-free" >> /etc/apt/sources.list

    # upgrade packages in base image
    DEBIAN_FRONTEND=noninteractive apt-get update && apt-get -y dist-upgrade

    # install additional packages
    DEBIAN_FRONTEND=noninteractive apt-get -y install joe mc wget htop pandoc pandoc-citeproc texlive-latex-recommended r-base octave gnuplot imagemagick julia ncl-ncarg cdo nco build-essential

    # clean up orphaned packages
    DEBIAN_FRONTEND=noninteractive apt-get -y autoremove

    # create a few ACI-specific directories within the container
    mkdir -p /storage/home
    mkdir -p /storage/work
    mkdir -p /gpfs/group
    mkdir -p /gpfs/scratch
    mkdir -p /var/spool/torque

Collection

• Name: scrim-network/container-dev
• License: None

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