scleveland/qiime2-singularity:2019.4

$ singularity pull shub://scleveland/qiime2-singularity:2019.4

Singularity Recipe

Bootstrap: shub
From: scleveland/centos7-base-singularity
#Bootstrap: debootstrap
#MirrorURL: http://us.archive.ubuntu.com/ubuntu/
#OSVersion: bionic

%environment
PATH=/opt/conda/envs/qiime2-2018.11/bin:/opt/conda/bin:$PATH
export PATH

%post
yum update -y
yum  install -y @"Development Tools"
yum install -y git curl which python3 python3-devel vim htop wget tar bzip2 gzip lz4 lzma mesa-libGL mesa-libGLU
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/conda
export PATH=/opt/conda/bin:$PATH
conda install -y conda
conda update -y conda
mkdir /lus
mkdir /lus/scratch

wget https://data.qiime2.org/distro/core/qiime2-2019.4-py36-linux-conda.yml
conda env create -n qiime2-2019.4 --file qiime2-2019.4-py36-linux-conda.yml
# OPTIONAL CLEANUP
rm qiime2-2019.4-py36-linux-conda.yml

%runscript
source activate qiime2-2019.4

Collection


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Metrics

key value
id /containers/scleveland-qiime2-singularity-2019.4
collection name scleveland/qiime2-singularity
branch master
tag 2019.4
commit 6fcb304f8753a7b255bea9903c622b8aed2095dd
version (container hash) 0950a4fd94d1f5f38bf3a1b16cee2b61
build date 2019-05-23T03:52:49.556Z
size (MB) 7149
size (bytes) 3041546271
SIF Download URL (please use pull with shub://)
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