scleveland/qiime2-singularity:2018.4

$ singularity pull shub://scleveland/qiime2-singularity:2018.4

Singularity Recipe

Bootstrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/
Include: yum

%environment
PATH=/opt/conda/envs/qiime2-2018.4/bin:/opt/conda/bin:$PATH
export PATH

%post
yum update -y
yum  install -y @"Development Tools"
yum install -y git curl which python3 python3-devel vim htop wget tar bzip2 gzip lz4 lzma mesa-libGL mesa-libGLU
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/conda
export PATH=/opt/conda/bin:$PATH
conda install -y conda
conda update -y conda
mkdir /lus
mkdir /lus/scratch

wget https://data.qiime2.org/distro/core/qiime2-2018.4-py35-linux-conda.yml
conda env create -n qiime2-2018.4 --file qiime2-2018.4-py35-linux-conda.yml
rm qiime2-2018.4-py35-linux-conda.yml
source activate qiime2-2018.4

%runscript
exec qiime "$@"

Collection


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Metrics

key value
id /containers/scleveland-qiime2-singularity-2018.4
collection name scleveland/qiime2-singularity
branch master
tag 2018.4
commit ca1ec64ca14694f26229af1d3d1a1e9bcb3e47b5
version (container hash) 3811cacae479fa02a138b926fb64357b
build date 2018-11-27T20:51:05.170Z
size (MB) 7306
size (bytes) 3112730655
SIF Download URL (please use pull with shub://)
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Singularity Recipe Singularity Recipe on Datalad
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