scleveland/qiime2-singularity:2018.2

$ singularity pull shub://scleveland/qiime2-singularity:2018.2

Singularity Recipe

Bootstrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-%{OSVERSION}/%{OSVERSION}/os/$basearch/ 
Include: yum

%environment
PATH=/opt/conda/envs/qiime2-2018.2/bin:/opt/conda/bin:$PATH
export PATH

%post
yum update -y
yum  install -y @"Development Tools"
yum install -y git curl which python3 python3-devel vim htop wget tar bzip2 gzip lz4 lzma mesa-libGL mesa-libGLU
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/conda
export PATH=/opt/conda/bin:$PATH
conda install -y conda
conda update -y conda
mkdir /lus
mkdir /lus/scratch

wget https://data.qiime2.org/distro/core/qiime2-2018.2-py35-linux-conda.yml
conda env create -n qiime2-2018.2 --file qiime2-2018.2-py35-linux-conda.yml
rm qiime2-2018.2-py35-linux-conda.yml
source activate qiime2-2018.2

%runscript
exec qiime "$@"

Collection


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Metrics

key value
id /containers/scleveland-qiime2-singularity-2018.2
collection name scleveland/qiime2-singularity
branch master
tag 2018.2
commit f26ba988c0d231a81276cac397258b32adc922b4
version (container hash) 1e1bb5831900d1a19e90742f1b7de709
build date 2018-11-27T20:50:55.275Z
size (MB) 7285
size (bytes) 3089481759
SIF Download URL (please use pull with shub://)
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Singularity Recipe Singularity Recipe on Datalad
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