scleveland/qiime2-singularity:2018.11

$ singularity pull shub://scleveland/qiime2-singularity:2018.11

Singularity Recipe

Bootstrap: shub
From: scleveland/centos7-base-singularity
#Bootstrap: debootstrap
#MirrorURL: http://us.archive.ubuntu.com/ubuntu/
#OSVersion: bionic

%environment
PATH=/opt/conda/envs/qiime2-2018.11/bin:/opt/conda/bin:$PATH
export PATH

%post
yum update -y
yum  install -y @"Development Tools"
yum install -y git curl which python3 python3-devel vim htop wget tar bzip2 gzip lz4 lzma mesa-libGL mesa-libGLU
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/conda
export PATH=/opt/conda/bin:$PATH
conda install -y conda
conda update -y conda
mkdir /lus
mkdir /lus/scratch

wget https://data.qiime2.org/distro/core/qiime2-2018.11-py35-linux-conda.yml
conda env create -n qiime2-2018.11 --file qiime2-2018.11-py35-linux-conda.yml
rm qiime2-2018.11-py35-linux-conda.yml

%runscript
source activate qiime2-2018.11

Collection


View on Datalad

Metrics

key value
id /containers/scleveland-qiime2-singularity-2018.11
collection name scleveland/qiime2-singularity
branch master
tag 2018.11
commit 71a23c7c0b9338c31c8086849aa6c7eac904fe13
version (container hash) 318f122ba9e00d5787c24d807df3a3e4
build date 2018-12-03T21:18:09.865Z
size (MB) 7856
size (bytes) 3250962463
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.