scicore-unibas-ch/singularity-container-freesurfer:1.1

$ singularity pull shub://scicore-unibas-ch/singularity-container-freesurfer:1.1

Singularity Recipe

Bootstrap: docker
From: centos:7

%post

    # bring up to date
    yum -y update

    # install the dependencies
    yum -y install epel-release
    yum install -y \
    bc \
    git \
    wget \
    tcsh \
    libblas \
    liblapack \
    zlib1g \
    libxmu \
    libxi \
    libxt \
    libx11 \
    libglu1-mesa

    # Uncompress FreeSurfer tarball to /usr/local/
    wget -c https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0/freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz -O - | \
    tar -xz -C /usr/local/

%environment
    export FREESURFER_HOME=/usr/local/freesurfer
    source $FREESURFER_HOME/SetUpFreeSurfer.sh

Collection


View on Datalad

Metrics

key value
id /containers/scicore-unibas-ch-singularity-container-freesurfer-1.1
collection name scicore-unibas-ch/singularity-container-freesurfer
branch master
tag 1.1
commit bee76ed8a6c77f5996975173797dc5662e69a70e
version (container hash) d545e1136c50db919738f7a7bdbd82b99fec6d8f137c26f89e1e6a94c2a75f7b
build date 2020-02-14T08:02:40.733Z
size (MB) 4398.25390625
size (bytes) 4611903488
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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