satra/om-images:bids-mriqc

$ singularity pull shub://satra/om-images:bids-mriqc

Singularity Recipe

# This container will run mriqc via singularity

BootStrap: docker
From: poldracklab/mriqc:latest

%runscript
    exec /usr/local/miniconda/bin/mriqc "$@"

%setup
    cp -r $SINGULARITY_ROOTFS/root/src $SINGULARITY_ROOTFS/opt
    chmod -R a+r $SINGULARITY_ROOTFS/opt/src

%post
    export PATH=/usr/local/miniconda/bin:$PATH
    pip install /opt/src/mriqc
    echo "
export PATH=/usr/local/miniconda/bin:$PATH
export LANG=C.UTF-8
export LC_ALL=C.UTF-8    

. /etc/fsl/fsl.sh
. /etc/afni/afni.sh
    
" >> /environment

    mkdir /om
    mkdir /cm

Collection


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Metrics

key value
id /containers/satra-om-images-bids-mriqc
collection name satra/om-images
branch bids-mriqc
tag bids-mriqc
commit 16763d38b5c27a46eb3fcf8ba7443e6d89ea466b
version (container hash) 3565598fd3e3485f17393b6c37caec14
build date 2017-10-19T17:45:42.646Z
size (MB) 5849
size (bytes) 2263293052
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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