satra/om-images:bids-mriqc
$ singularity pull shub://satra/om-images:bids-mriqc
Singularity Recipe
# This container will run mriqc via singularity
BootStrap: docker
From: poldracklab/mriqc:latest
%runscript
exec /usr/local/miniconda/bin/mriqc "$@"
%setup
cp -r $SINGULARITY_ROOTFS/root/src $SINGULARITY_ROOTFS/opt
chmod -R a+r $SINGULARITY_ROOTFS/opt/src
%post
export PATH=/usr/local/miniconda/bin:$PATH
pip install /opt/src/mriqc
echo "
export PATH=/usr/local/miniconda/bin:$PATH
export LANG=C.UTF-8
export LC_ALL=C.UTF-8
. /etc/fsl/fsl.sh
. /etc/afni/afni.sh
" >> /environment
mkdir /om
mkdir /cm
Collection
- Name: satra/om-images
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/satra-om-images-bids-mriqc |
collection name | satra/om-images |
branch | bids-mriqc |
tag | bids-mriqc |
commit | 16763d38b5c27a46eb3fcf8ba7443e6d89ea466b |
version (container hash) | 3565598fd3e3485f17393b6c37caec14 |
build date | 2017-10-19T17:45:42.646Z |
size (MB) | 5849 |
size (bytes) | 2263293052 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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