rpolicastro/kumar_analysis:latest
$ singularity pull shub://rpolicastro/kumar_analysis:latest
Singularity Recipe
Bootstrap: docker
From: continuumio/miniconda3
%post
## Add conda to path
export PATH=$PATH:/opt/conda/bin
## Update conda
conda update -n base -y -c defaults conda
## Install Drop-seq analysis software
conda create -n dropseq-analysis -y -c conda-forge -c bioconda \
dropseq_tools star picard fastqc sra-tools \
r-tidyverse r-seurat umap-learn
## Update Drop-seq analysis environment
conda update -n dropseq-analysis -y -c conda-forge -c bioconda --all
## Clean up extra files
conda clean -y --all
Collection
- Name: rpolicastro/kumar_analysis
- License: GNU General Public License v3.0
View on Datalad
Metrics
key | value |
---|---|
id | /containers/rpolicastro-kumar_analysis-latest |
collection name | rpolicastro/kumar_analysis |
branch | master |
tag | latest |
commit | 15d06bff485c3406d75c4086b54f2cc043b09711 |
version (container hash) | 7f7866c52ea98ab647f33af697a84599 |
build date | 2019-07-04T14:23:00.807Z |
size (MB) | None |
size (bytes) | 1341095967 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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