rpolicastro/kumar_analysis:latest

$ singularity pull shub://rpolicastro/kumar_analysis:latest

Singularity Recipe

Bootstrap: docker
From: continuumio/miniconda3

%post

## Add conda to path
export PATH=$PATH:/opt/conda/bin

## Update conda
conda update -n base -y -c defaults conda

## Install Drop-seq analysis software
conda create -n dropseq-analysis -y -c conda-forge -c bioconda \
dropseq_tools star picard fastqc sra-tools \
r-tidyverse r-seurat umap-learn

## Update Drop-seq analysis environment
conda update -n dropseq-analysis -y -c conda-forge -c bioconda --all

## Clean up extra files
conda clean -y --all

Collection


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Metrics

key value
id /containers/rpolicastro-kumar_analysis-latest
collection name rpolicastro/kumar_analysis
branch master
tag latest
commit 15d06bff485c3406d75c4086b54f2cc043b09711
version (container hash) 7f7866c52ea98ab647f33af697a84599
build date 2019-07-04T14:23:00.807Z
size (MB) None
size (bytes) 1341095967
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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