rpolicastro/chip_downsampling:latest
$ singularity pull shub://rpolicastro/chip_downsampling:latest
Singularity Recipe
Bootstrap: docker
From: continuumio/miniconda3
%post
## Add conda to path
export PATH=$PATH:/opt/conda/bin
## Update conda
conda update -n base -y -c defaults conda
## Install chipseq-automation software
conda create -n chip-downsampling -y -c conda-forge -c bioconda \
r-getopt samtools bioconductor-rsubread macs2
## Update chipseq-automation environment
conda update -n chip-downsampling -y -c conda-forge -c bioconda --all
## Clean up extra files
conda clean --all
Collection
- Name: rpolicastro/chip_downsampling
- License: GNU General Public License v3.0
View on Datalad
Metrics
key | value |
---|---|
id | /containers/rpolicastro-chip_downsampling-latest |
collection name | rpolicastro/chip_downsampling |
branch | dev |
tag | latest |
commit | 96ba7a5e2c589c727fef5109a1fe3cebd5f4cf1f |
version (container hash) | 9f0202cd088299b924e3c8dd8f4bc036 |
build date | 2020-03-06T14:32:37.862Z |
size (MB) | 1507 |
size (bytes) | 518557727 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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