rpolicastro/bioconductor-container:latest

$ singularity pull shub://rpolicastro/bioconductor-container:latest

Singularity Recipe

Bootstrap: docker
From: continuumio/miniconda3

%post

## Add conda to path
export PATH=$PATH:/opt/conda/bin

## Update conda
conda update -n base -y -c defaults conda

## Create environment
conda create -n bioconductor -y -c conda-forge -c bioconda -y \
r-tidyverse \
r-getopt \
r-devtools \
r-roxygen2 \
bioconductor-tsrchitect \
bioconductor-genomicranges \
bioconductor-genomicfeatures \
bioconductor-rtracklayer \
bioconductor-chipseeker \
bioconductor-clusterprofiler \
bioconductor-gviz \
bioconductor-biomart \
bioconductor-edger \
bioconductor-deseq2 \
bioconductor-rsubread \
bioconductor-rsamtools \
bioconductor-annotationhub \
bioconductor-reactomepa \
bioconductor-dose \
bioconductor-diffbind

## Update environment
conda update -n bioconductor -y -c conda-forge -c bioconda --all

## Clean up extra files
conda clean --all

Collection


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Metrics

key value
id /containers/rpolicastro-bioconductor-container-latest
collection name rpolicastro/bioconductor-container
branch master
tag latest
commit cb439515bcae1746527f70329b62828b6083a4fc
version (container hash) f390ddbbda069a55ef43e32c0ec02e8f
build date 2020-08-18T18:41:49.945Z
size (MB) 5006
size (bytes) 1496412191
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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