rpolicastro/bioconductor-container:latest
$ singularity pull shub://rpolicastro/bioconductor-container:latest
Singularity Recipe
Bootstrap: docker
From: continuumio/miniconda3
%post
## Add conda to path
export PATH=$PATH:/opt/conda/bin
## Update conda
conda update -n base -y -c defaults conda
## Create environment
conda create -n bioconductor -y -c conda-forge -c bioconda -y \
r-tidyverse \
r-getopt \
r-devtools \
r-roxygen2 \
bioconductor-tsrchitect \
bioconductor-genomicranges \
bioconductor-genomicfeatures \
bioconductor-rtracklayer \
bioconductor-chipseeker \
bioconductor-clusterprofiler \
bioconductor-gviz \
bioconductor-biomart \
bioconductor-edger \
bioconductor-deseq2 \
bioconductor-rsubread \
bioconductor-rsamtools \
bioconductor-annotationhub \
bioconductor-reactomepa \
bioconductor-dose \
bioconductor-diffbind
## Update environment
conda update -n bioconductor -y -c conda-forge -c bioconda --all
## Clean up extra files
conda clean --all
Collection
View on Datalad
Metrics
key | value |
---|---|
id | /containers/rpolicastro-bioconductor-container-latest |
collection name | rpolicastro/bioconductor-container |
branch | master |
tag | latest |
commit | cb439515bcae1746527f70329b62828b6083a4fc |
version (container hash) | f390ddbbda069a55ef43e32c0ec02e8f |
build date | 2020-08-18T18:41:49.945Z |
size (MB) | 5006 |
size (bytes) | 1496412191 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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