rpolicastro/RNAseq:latest

$ singularity pull shub://rpolicastro/RNAseq:latest

Singularity Recipe

Bootstrap: docker
From: continuumio/miniconda3

%post

## Add conda to path
export PATH=$PATH:/opt/conda/bin

## Update conda
conda update -n base -y -c defaults conda

## Install RNA-seq analysis software
conda create -n rnaseq-automation -y -c conda-forge -c bioconda \
pandas fastqc star samtools subread \
r-tidyverse bioconductor-rtracklayer bioconductor-genomicranges bioconductor-genomicfeatures \
bioconductor-edger bioconductor-deseq2 bioconductor-clusterprofiler bioconductor-reactomepa

## Update rnaseq-automation environment
#conda update -n chip-downsampling -y --strict-channel-priority -c conda-forge -c bioconda --all

## Clean up extra files
conda clean -y --all

Collection


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Metrics

key value
id /containers/rpolicastro-RNAseq-latest
collection name rpolicastro/RNAseq
branch dev
tag latest
commit 274655bac181b9ee23c92848ed0b80f948d23003
version (container hash) 277ba535bebda2188b8c66ae3b95191d
build date 2020-01-30T16:16:27.238Z
size (MB) 5541
size (bytes) 1742438431
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
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