rpolicastro/ChIPseq:latest
$ singularity pull shub://rpolicastro/ChIPseq:latest
Singularity Recipe
Bootstrap: docker
From: continuumio/miniconda3
%post
## Add conda to path
export PATH=$PATH:/opt/conda/bin
## Update conda
conda update -n base -y -c defaults conda
## Install chipseq-automation environment
conda create -n chipseq-automation -y -c conda-forge -c bioconda \
fastqc bowtie2 samtools macs2 deeptools bedtools sra-tools r-tidyverse r-getopt \
bioconductor-chipseeker bioconductor-rtracklayer bioconductor-genomicranges \
bioconductor-genomicfeatures
## Update chipseq-automation environment
conda update -n chipseq-automation -y -c conda-forge -c bioconda --all
## Clean up extra files
conda clean --all
Collection
- Name: rpolicastro/ChIPseq
- License: GNU General Public License v3.0
View on Datalad
Metrics
key | value |
---|---|
id | /containers/rpolicastro-ChIPseq-latest |
collection name | rpolicastro/ChIPseq |
branch | dev |
tag | latest |
commit | 86e52075e7209b291c55f375e65bfb4ee0ea9fe4 |
version (container hash) | 5be1b8e5e21b7db569407b1822d3f83c |
build date | 2019-11-16T20:17:05.827Z |
size (MB) | 3584 |
size (bytes) | 1312874527 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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