rpolicastro/ChIPseq:latest

$ singularity pull shub://rpolicastro/ChIPseq:latest

Singularity Recipe

Bootstrap: docker
From: continuumio/miniconda3

%post

## Add conda to path
export PATH=$PATH:/opt/conda/bin

## Update conda
conda update -n base -y -c defaults conda

## Install chipseq-automation environment
conda create -n chipseq-automation -y -c conda-forge -c bioconda \
fastqc bowtie2 samtools macs2 deeptools bedtools sra-tools r-tidyverse r-getopt \
bioconductor-chipseeker bioconductor-rtracklayer bioconductor-genomicranges \
bioconductor-genomicfeatures

## Update chipseq-automation environment
conda update -n chipseq-automation -y -c conda-forge -c bioconda --all

## Clean up extra files
conda clean --all

Collection


View on Datalad

Metrics

key value
id /containers/rpolicastro-ChIPseq-latest
collection name rpolicastro/ChIPseq
branch dev
tag latest
commit 86e52075e7209b291c55f375e65bfb4ee0ea9fe4
version (container hash) 5be1b8e5e21b7db569407b1822d3f83c
build date 2019-11-16T20:17:05.827Z
size (MB) 3584
size (bytes) 1312874527
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
We cannot guarantee that all containers will still exist on GitHub.