romxero/flappie_singularity:latest
$ singularity pull shub://romxero/flappie_singularity:latest
Singularity Recipe
Bootstrap: docker
From: ubuntu:16.04
%labels
Author "Randall Cab White - rcwhite@stanford.edu"
#########
#%setup
#########
%post
alias sudo='' #makes it easier to copy and paste tutorials =P
apt-get -ym update
apt-get -ym install git kdiff3 curl
apt-get -ym install cmake gcc # BUILD UTILS
curl -s https://packagecloud.io/install/repositories/github/git-lfs/script.deb.sh | bash
apt-get -ym install git-lfs
git lfs install #redundant
apt-get -ym install libcunit1 hdf5-tools libhdf5-10 libopenblas-base # Running libraries
apt-get -ym install libcunit1-dev libhdf5-dev libopenblas-dev
##apt-key adv --keyserver hkp://keyserver.ubuntu.com:80 --recv-keys 3FA7E0328081BFF6A14DA29AA6A19B38D3D831EF
##echo "deb http://download.mono-project.com/repo/debian wheezy main" | sudo tee /etc/apt/sources.list.d/mono-xamarin.list
##apt-get -ym update
##apt-get -ym install mono-complete
git clone https://github.com/nanoporetech/flappie
cd flappie
make flappie
%environment
export IMAGE_NAME="FLAGPIE"
export PATH="/flappie/build:$PATH" #setting the path for flapp
Collection
- Name: romxero/flappie_singularity
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/romxero-flappie_singularity-latest |
collection name | romxero/flappie_singularity |
branch | master |
tag | latest |
commit | 1989ba49cc7d387afce9ad85b81c78c9b5c7e528 |
version (container hash) | d1d3699624b07f28c828f27293805d1a |
build date | 2019-04-17T14:28:05.102Z |
size (MB) | 1568 |
size (bytes) | 550219807 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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