rmcolq/Singularity_recipes:racon
$ singularity pull shub://rmcolq/Singularity_recipes:racon
Singularity Recipe
Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/
%help
A container to hold the polishing tool racon.
Run `singularity exec racon.simg racon`
%environment
PATH=/usr/local/bin:$PATH
%post
apt-get update
apt-get install -y software-properties-common
apt-add-repository universe
apt-get update
apt-get install -y \
build-essential \
cmake \
git \
libbz2-dev \
liblzma-dev \
libncurses-dev \
openjdk-8-jre \
wget \
zlib1g-dev
export LC_ALL=C.UTF-8
export LANG=C.UTF-8
echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
#============================================
# INSTALL MINIMAP2
#============================================
VERSION="2.11"
wget https://github.com/lh3/minimap2/archive/v"$VERSION".tar.gz
tar xzf v"$VERSION".tar.gz
rm v"$VERSION".tar.gz
cd minimap2-*
make
echo "export PATH=$PWD:$PATH" >> $SINGULARITY_ENVIRONMENT
cd ..
#============================================
# INSTALL RACON
#============================================
git clone --recursive https://github.com/isovic/racon.git racon
cd racon
mkdir build
cd build
cmake -DCMAKE_BUILD_TYPE=Release ..
make
make install
Collection
- Name: rmcolq/Singularity_recipes
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/rmcolq-Singularity_recipes-racon |
collection name | rmcolq/Singularity_recipes |
branch | master |
tag | racon |
commit | 2426fcf36d8426c0195223d88f045590d35bf59a |
version (container hash) | d443f5a9c83a45070233be77e1cc19dc |
build date | 2018-08-08T03:56:31.872Z |
size (MB) | 1207 |
size (bytes) | 522330143 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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