rmcolq/Singularity_recipes:canu

$ singularity pull shub://rmcolq/Singularity_recipes:canu

Singularity Recipe

Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/

%help
  A container to hold the assembler canu.
  Run `singularity exec canu.simg canu`

%environment
  PATH=/usr/local/bin:/root/canu-1.7/Linux-amd64/bin:$PATH

%post
    apt-get update
    apt-get install -y software-properties-common
    apt-add-repository universe
    apt-get update
    apt-get install -y \
      wget build-essential \
      openjdk-8-jre \
      gnuplot
    export LC_ALL=C.UTF-8
    export LANG=C.UTF-8
    echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
    echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT


    #============================================
    # INSTALL CANU
    #============================================
    VERSION="1.7"
    wget https://github.com/marbl/canu/archive/v"$VERSION".tar.gz
    tar xzf v$VERSION.tar.gz
    rm v$VERSION.tar.gz
    cd canu-${VERSION}/src
    make -j 8
    cd ../Linux-amd64/bin/
    echo "export PATH=$(pwd):$PATH" >> $SINGULARITY_ENVIRONMENT

Collection


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Metrics

key value
id /containers/rmcolq-Singularity_recipes-canu
collection name rmcolq/Singularity_recipes
branch master
tag canu
commit 198bb4c802b56e49a150d0cb9d0b15b3cdc965c7
version (container hash) ace63073235013bc3d8fc27561880bbd
build date 2018-07-21T00:28:23.734Z
size (MB) 1401
size (bytes) 576516127
SIF Download URL (please use pull with shub://)
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Singularity Recipe Singularity Recipe on Datalad
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