rmcolq/Singularity_recipes:canu
$ singularity pull shub://rmcolq/Singularity_recipes:canu
Singularity Recipe
Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/
%help
A container to hold the assembler canu.
Run `singularity exec canu.simg canu`
%environment
PATH=/usr/local/bin:/root/canu-1.7/Linux-amd64/bin:$PATH
%post
apt-get update
apt-get install -y software-properties-common
apt-add-repository universe
apt-get update
apt-get install -y \
wget build-essential \
openjdk-8-jre \
gnuplot
export LC_ALL=C.UTF-8
export LANG=C.UTF-8
echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
#============================================
# INSTALL CANU
#============================================
VERSION="1.7"
wget https://github.com/marbl/canu/archive/v"$VERSION".tar.gz
tar xzf v$VERSION.tar.gz
rm v$VERSION.tar.gz
cd canu-${VERSION}/src
make -j 8
cd ../Linux-amd64/bin/
echo "export PATH=$(pwd):$PATH" >> $SINGULARITY_ENVIRONMENT
Collection
- Name: rmcolq/Singularity_recipes
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/rmcolq-Singularity_recipes-canu |
collection name | rmcolq/Singularity_recipes |
branch | master |
tag | canu |
commit | 198bb4c802b56e49a150d0cb9d0b15b3cdc965c7 |
version (container hash) | ace63073235013bc3d8fc27561880bbd |
build date | 2018-07-21T00:28:23.734Z |
size (MB) | 1401 |
size (bytes) | 576516127 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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