rmcolq/Singularity_recipes:art
$ singularity pull shub://rmcolq/Singularity_recipes:art
Singularity Recipe
Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/
%help
A container to hold the read simulator nanosim.
Run `singularity exec nanosim.simg nanosim`
%environment
PATH=/usr/local/bin:$PATH
%post
apt-get update
apt-get install -y --no-install-recommends apt-utils
apt-get update
apt-get install -y software-properties-common
apt-add-repository universe
apt-get update
apt-get install -y \
automake \
build-essential \
cmake \
git \
gnuplot \
graphviz \
openjdk-8-jre \
libbz2-dev \
libfreetype6-dev \
libhts-dev \
liblzma-dev \
libncurses5-dev \
libncursesw5-dev \
pkg-config \
python3-dev \
python3-pip \
python3-setuptools \
python3-tk \
python3-venv \
samtools \
tabix \
vcftools \
wget \
zlib1g-dev
export LC_ALL=C.UTF-8
export LANG=C.UTF-8
echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
#============================================
# INSTALL ART
#============================================
wget https://www.niehs.nih.gov/research/resources/assets/docs/artbinmountrainier2016.06.05linux64.tgz
tar xzf artbinmountrainier2016.06.05linux64.tgz
echo "export PATH=/art_bin_MountRainier/:$PATH" >> $SINGULARITY_ENVIRONMENT
Collection
- Name: rmcolq/Singularity_recipes
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/rmcolq-Singularity_recipes-art |
collection name | rmcolq/Singularity_recipes |
branch | master |
tag | art |
commit | 029f6dbf82ea33c9f2f05d534cdd4b174604a82c |
version (container hash) | b4f6de694432e94da15eee1bd19649de |
build date | 2019-01-16T07:21:12.153Z |
size (MB) | 1407 |
size (bytes) | 634261535 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
Feedback
Was this page helpful?
Glad to hear it! Please tell us how we can improve.
Sorry to hear that. Please tell us how we can improve.