rmcolq/Singularity_recipes:alignqc
$ singularity pull shub://rmcolq/Singularity_recipes:alignqc
Singularity Recipe
Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/
%help
A container to hold the read simulator nanosim.
Run `singularity exec nanosim.simg nanosim`
%environment
PATH=/usr/local/bin:$PATH
%post
apt-get update
apt-get install -y --no-install-recommends apt-utils
apt-get update
apt-get install -y software-properties-common
apt-add-repository universe
apt-get update
apt-get install -y \
automake \
build-essential \
cmake \
git \
gnuplot \
graphviz \
libbz2-dev \
libfreetype6-dev \
libhts-dev \
liblzma-dev \
libncurses5-dev \
libncursesw5-dev \
pkg-config \
python-dev \
python-pip \
python-setuptools \
r-base \
samtools \
vim \
wget \
zlib1g-dev
export LC_ALL=C.UTF-8
export LANG=C.UTF-8
echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
#================================
# INSTALL ALIGNQC
#================================
pip install seq-tools==1.0.10
pip install AlignQC==2.0.5
Collection
- Name: rmcolq/Singularity_recipes
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/rmcolq-Singularity_recipes-alignqc |
collection name | rmcolq/Singularity_recipes |
branch | master |
tag | alignqc |
commit | b1354460f4366050da43834f1776d57b78b2d02b |
version (container hash) | 017ffdeaaaf0e14dae0561c13f385b59 |
build date | 2020-03-23T19:00:37.470Z |
size (MB) | 1555 |
size (bytes) | 759791647 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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