rmcolq/Singularity_recipes:alignqc

$ singularity pull shub://rmcolq/Singularity_recipes:alignqc

Singularity Recipe

Bootstrap: debootstrap
OSVersion: bionic
MirrorURL: http://us.archive.ubuntu.com/ubuntu/

%help
  A container to hold the read simulator nanosim.
  Run `singularity exec nanosim.simg nanosim`

%environment
  PATH=/usr/local/bin:$PATH

%post
    apt-get update
    apt-get install -y --no-install-recommends apt-utils
    apt-get update
    apt-get install -y software-properties-common
    apt-add-repository universe
    apt-get update
    apt-get install -y \
      automake \
      build-essential \
      cmake \
      git \
      gnuplot \
      graphviz \
      libbz2-dev \
      libfreetype6-dev \
      libhts-dev \
      liblzma-dev \
      libncurses5-dev \
      libncursesw5-dev \
      pkg-config \
      python-dev \
      python-pip \
      python-setuptools \
      r-base \
      samtools \
      vim \
      wget \
      zlib1g-dev
    export LC_ALL=C.UTF-8
    export LANG=C.UTF-8
    echo 'export LC_ALL=C.UTF-8' >> $SINGULARITY_ENVIRONMENT
    echo 'export LANG=C.UTF-8' >> $SINGULARITY_ENVIRONMENT

    #================================
    # INSTALL ALIGNQC
    #================================
    pip install seq-tools==1.0.10
    pip install AlignQC==2.0.5

Collection


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Metrics

key value
id /containers/rmcolq-Singularity_recipes-alignqc
collection name rmcolq/Singularity_recipes
branch master
tag alignqc
commit b1354460f4366050da43834f1776d57b78b2d02b
version (container hash) 017ffdeaaaf0e14dae0561c13f385b59
build date 2020-03-23T19:00:37.470Z
size (MB) 1555
size (bytes) 759791647
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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