retogerber/singularity_diffcyt_base:latest

$ singularity pull shub://retogerber/singularity_diffcyt_base:latest

Singularity Recipe

Bootstrap: docker
From: rocker/verse:4.0.0

%post

        R -e 'install.packages(c("BiocManager","lme4","multcomp","reshape2","circlize","MASS","mice","survival","stats","RhpcBLASctl","uwot","dirmult"), verbose=FALSE, quiet=TRUE)'

        R -e 'BiocManager::install(version="3.12",ask=FALSE);BiocManager::install(c("flowCore","FlowSOM","SummarizedExperiment","S4Vectors", "limma","edgeR","ComplexHeatmap","BiocParallel","BiocStyle", "CATALYST"), ask = FALSE, verbose=FALSE, quiet=TRUE)'

Collection


View on Datalad

Metrics

key value
id /containers/retogerber-singularity_diffcyt_base-latest
collection name retogerber/singularity_diffcyt_base
branch master
tag latest
commit c4fc1d74fdab1e8da2752eef31f392a2bd348081
version (container hash) 044337a4fb1c123a4cf5bc98e5a00efc1abaa213c4c9f92451bd2ced84f265f7
build date 2021-03-31T05:44:39.524Z
size (MB) 1490.3359375
size (bytes) 1562730496
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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