remyd1/ubuntu-r-base:src-stats
$ singularity pull shub://remyd1/ubuntu-r-base:src-stats
Singularity Recipe
Bootstrap: docker
From: ubuntu:16.04
%environment
R_VERSION=3.4.3
export R_VERSION
R_CONFIG_DIR=/etc/R/
export R_CONFIG_DIR
%labels
Author Remy Dernat
Version v0.0.1
R_Version 3.4.3
build_date 2018 Feb 26
R_cran True
%apprun R
exec R "$@"
%apprun Rscript
exec Rscript "$@"
%runscript
exec R "$@"
%post
NPROCS=`awk '/^processor/ {s+=1}; END{print s}' /proc/cpuinfo`
apt-get update --fix-missing
apt-get install -y wget
cd $HOME
wget https://cran.rstudio.com/src/base/R-3/R-3.4.3.tar.gz
tar xvf R-3.4.3.tar.gz
cd R-3.4.3
apt-get update
apt-get install -y libblas3 libblas-dev liblapack-dev liblapack3 curl
apt-get install -y libgmp10 libgmp-dev
apt-get install -y gcc fort77 aptitude
aptitude install -y g++
aptitude install -y xorg-dev
aptitude install -y libreadline-dev
aptitude install -y gfortran
gfortran --version
apt install -y libssl-dev libxml2-dev libpcre3-dev liblzma-dev libbz2-dev libcurl4-openssl-dev
./configure --enable-R-static-lib --with-blas --with-lapack --enable-R-shlib=yes
echo "Will use make with $NPROCS cores."
make -j${NPROCS}
make install
R --version
ln -s /usr/local/bin/R /usr/bin/R
ln -s /usr/local/bin/Rscript /usr/bin/Rscript
# installing some packages
echo install.packages\(\"spaMM\"\, repos\=\'https://cloud.r-project.org\'\, Ncpus\=${NPROCS}\) | R --slave
echo install.packages\(\"blackbox\"\, repos\=\'https://cloud.r-project.org\'\, Ncpus\=${NPROCS}\) | R --slave
echo install.packages\(\"Infusion\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave
echo install.packages\(\"IsoriX\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave
echo install.packages\(\"mvtnorm\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave
echo install.packages\(\"geometry\"\, repos\=\'https://cloud.r-project.org/\'\, Ncpus\=${NPROCS}\) | R --slave
Collection
- Name: remyd1/ubuntu-r-base
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/remyd1-ubuntu-r-base-src-stats |
collection name | remyd1/ubuntu-r-base |
branch | master |
tag | src-stats |
commit | e9bd45ac511cfdd9c7d7db7fa654d6b38dbebf8b |
version (container hash) | d71b64880f65611cdd8e4dccb38fe09d |
build date | 2018-04-11T17:52:04.825Z |
size (MB) | 1055 |
size (bytes) | 383103007 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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