remiolsen/FRCbam-singularity:latest

$ singularity pull shub://remiolsen/FRCbam-singularity:latest

Singularity Recipe

BootStrap: docker
From: debian:9

%label
    Maintainer remi-andre.olsen@scilifelab.se

%post
    apt-get update
    apt-get install -y git build-essential cmake libboost1.62-all-dev zlib1g-dev

    git clone https://github.com/vezzi/FRC_align.git
    cd FRC_align
    mkdir build
    cd build
    cmake ..
    make

    cp lib/bamtools/src/api/libbamtools.so* /lib
    cp ../bin/FRC /bin

    apt-get clean
    rm -rf /var/lib/apt/lists/*

    #UPPMAX stuff NOTE: Only testing for now, should use singulary run -B /sw:/sw etc container.img
    mkdir /sw
    mkdir /proj
    mkdir /pica
    mkdir /lupus

%runscript
    exec FRC "$@"

Collection


View on Datalad

Metrics

key value
id /containers/remiolsen-FRCbam-singularity-latest
collection name remiolsen/FRCbam-singularity
branch master
tag latest
commit a0907801ca70ba0bb321b5189d480f5c173d3bb1
version (container hash) c09bc96df7a3eb1f2404d4710a4fac46
build date 2017-10-30T16:11:34.719Z
size (MB) 1033
size (bytes) 314036255
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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