remiolsen/FRCbam-singularity:latest
$ singularity pull shub://remiolsen/FRCbam-singularity:latest
Singularity Recipe
BootStrap: docker
From: debian:9
%label
Maintainer remi-andre.olsen@scilifelab.se
%post
apt-get update
apt-get install -y git build-essential cmake libboost1.62-all-dev zlib1g-dev
git clone https://github.com/vezzi/FRC_align.git
cd FRC_align
mkdir build
cd build
cmake ..
make
cp lib/bamtools/src/api/libbamtools.so* /lib
cp ../bin/FRC /bin
apt-get clean
rm -rf /var/lib/apt/lists/*
#UPPMAX stuff NOTE: Only testing for now, should use singulary run -B /sw:/sw etc container.img
mkdir /sw
mkdir /proj
mkdir /pica
mkdir /lupus
%runscript
exec FRC "$@"
Collection
- Name: remiolsen/FRCbam-singularity
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/remiolsen-FRCbam-singularity-latest |
collection name | remiolsen/FRCbam-singularity |
branch | master |
tag | latest |
commit | a0907801ca70ba0bb321b5189d480f5c173d3bb1 |
version (container hash) | c09bc96df7a3eb1f2404d4710a4fac46 |
build date | 2017-10-30T16:11:34.719Z |
size (MB) | 1033 |
size (bytes) | 314036255 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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