regicor/mrna:latest

$ singularity pull shub://regicor/mrna:latest

Singularity Recipe

Bootstrap:docker  
From:ubuntu:18.04

%post
    # Installing ubuntu dependencies
    apt-get update
    apt-get install -y libcurl4-gnutls-dev libxml2-dev libssl-dev libmariadb-client-lgpl-dev ibglib2.0-dev libcairo2-dev \
    ghostscript libxt-dev r-base
    apt-get clean
    rm -rf /var/lib/apt/lists/*
    # Installing all R packages
    Rscript -e 'r = getOption("repos"); r["CRAN"] = "https://cran.rstudio.com/"; options(repos = r); install.packages("BiocManager")'
    Rscript -e 'r = getOption("repos"); r["CRAN"] = "https://cran.rstudio.com/"; options(repos = r); BiocManager::install(c("sva","edgeR","limma","oligo","oligoClasses","BiocGenerics","ggplot2","parallel","Biobase","Biostrings","S4Vectors","stats4","IRanges","XVector","pd.huex.1.0.st.v2","genefilter"))'
    Rscript -e 'install.packages("devtools", dependencies = TRUE, repos = "https://cran.rstudio.com"); library(devtools); install_github("brentp/celltypes450")'
    #Rscript -e 'install.packages("BiocManager", repos = "https://cran.rstudio.com/")'
%test
    R --version

Collection


View on Datalad

Metrics

key value
id /containers/regicor-mrna-latest
collection name regicor/mrna
branch master
tag latest
commit b0c747246fc76c4decc1ce5cd2000b7e276e5c5b
version (container hash) e5e94bbdefa5e46d73bcbd8622cb70eb
build date 2020-02-28T14:56:08.471Z
size (MB) 1718.0
size (bytes) 764764191
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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