regicor/mrna:latest
$ singularity pull shub://regicor/mrna:latest
Singularity Recipe
Bootstrap:docker
From:ubuntu:18.04
%post
# Installing ubuntu dependencies
apt-get update
apt-get install -y libcurl4-gnutls-dev libxml2-dev libssl-dev libmariadb-client-lgpl-dev ibglib2.0-dev libcairo2-dev \
ghostscript libxt-dev r-base
apt-get clean
rm -rf /var/lib/apt/lists/*
# Installing all R packages
Rscript -e 'r = getOption("repos"); r["CRAN"] = "https://cran.rstudio.com/"; options(repos = r); install.packages("BiocManager")'
Rscript -e 'r = getOption("repos"); r["CRAN"] = "https://cran.rstudio.com/"; options(repos = r); BiocManager::install(c("sva","edgeR","limma","oligo","oligoClasses","BiocGenerics","ggplot2","parallel","Biobase","Biostrings","S4Vectors","stats4","IRanges","XVector","pd.huex.1.0.st.v2","genefilter"))'
Rscript -e 'install.packages("devtools", dependencies = TRUE, repos = "https://cran.rstudio.com"); library(devtools); install_github("brentp/celltypes450")'
#Rscript -e 'install.packages("BiocManager", repos = "https://cran.rstudio.com/")'
%test
R --version
Collection
- Name: regicor/mrna
- License: None
View on Datalad
Metrics
key | value |
---|---|
id | /containers/regicor-mrna-latest |
collection name | regicor/mrna |
branch | master |
tag | latest |
commit | b0c747246fc76c4decc1ce5cd2000b7e276e5c5b |
version (container hash) | e5e94bbdefa5e46d73bcbd8622cb70eb |
build date | 2020-02-28T14:56:08.471Z |
size (MB) | 1718.0 |
size (bytes) | 764764191 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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