qlan3/singularity-deffile:gvfn

$ singularity pull shub://qlan3/singularity-deffile:gvfn

Singularity Recipe

Bootstrap: docker
From: ubuntu:16.04

%environment
    export PATH="/usr/local/miniconda3/bin:$PATH"

%post
    apt-get update && apt-get -y upgrade
    
    # Install basic packages
    apt-get -y install vim wget bzip2 parallel git \
    libopenmpi-dev libsm6 libxrender-dev build-essential python-dev python-setuptools
    
    # Install miniconda
    wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
    bash Miniconda3-latest-Linux-x86_64.sh -b -p /usr/local/miniconda3
    rm Miniconda3-latest-Linux-x86_64.sh

    # Install tensorflow
    /usr/local/miniconda3/bin/conda install -y -c conda-forge tensorflow
    
    # Install tensorboardX
    /usr/local/miniconda3/bin/pip install tensorboardX
    
    # Install PyTorch 
    /usr/local/miniconda3/bin/conda install -y pytorch-cpu torchvision-cpu -c pytorch

    # Install PyTorch text and spacy
    /usr/local/miniconda3/bin/pip install torchtext
    /usr/local/miniconda3/bin/pip install spacy
    /usr/local/miniconda3/bin/python -m spacy download en

    # Install seaborn pyarrow tqdm pandas psutil opencv-python
    /usr/local/miniconda3/bin/conda install -y -c conda-forge matplotlib
    /usr/local/miniconda3/bin/conda install -y seaborn
    /usr/local/miniconda3/bin/pip install pyarrow
    /usr/local/miniconda3/bin/conda install -y tqdm
    /usr/local/miniconda3/bin/conda install -y pandas
    /usr/local/miniconda3/bin/conda install -y -c anaconda psutil

Collection

• Name: qlan3/singularity-deffile
• License: MIT License

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