qbicsoftware/qbic-singularity-qiime:latest

$ singularity pull shub://qbicsoftware/qbic-singularity-qiime:latest

Singularity Recipe

Bootstrap:docker
From:biocontainers/biocontainers:latest
#Registry: quay.io

%environment
#Set your toolname here and the appropriate version to have this in the metadata of your container
    QIIME=1.9.1
    PATH=/usr/bin/miniconda/envs/qiime1/bin:/usr/bin/miniconda/bin:$PATH
    LC_ALL="C"

%post 
apt-get install -y git wget build-essential curl file git python-setuptools
wget https://repo.continuum.io/miniconda/Miniconda2-4.0.5-Linux-x86_64.sh
chmod +x Miniconda2-4.0.5-Linux-x86_64.sh
./Miniconda2-4.0.5-Linux-x86_64.sh -b -p /usr/bin/miniconda

export PATH="$PATH:/usr/bin/miniconda/envs/qiime1/bin:/usr/bin/miniconda/bin"
conda create -n qiime1 python=2.7 qiime matplotlib=1.4.3 mock vsearch=2.3.4 fastq-join nose -c bioconda
ln -s /usr/bin/miniconda/envs/qiime1/bin/vsearch /usr/bin/miniconda/envs/qiime1/bin/usearch61
%labels
Maintainer	alexander.peltzer@uni-tuebingen.de

Collection


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Metrics

key value
id /containers/qbicsoftware-qbic-singularity-qiime-latest
collection name qbicsoftware/qbic-singularity-qiime
branch master
tag latest
commit e9f64edf777972c1af7dd75b30ec9c65ac795d9c
version (container hash) 5e58ee00af47a589db312ab7f2c187c4
build date 2021-04-05T23:45:32.037Z
size (MB) 2895
size (bytes) 1133588511
SIF Download URL (please use pull with shub://)
Datalad URL View on Datalad
Singularity Recipe Singularity Recipe on Datalad
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