qbicsoftware/qbic-singularity-qiime:latest
$ singularity pull shub://qbicsoftware/qbic-singularity-qiime:latest
Singularity Recipe
Bootstrap:docker
From:biocontainers/biocontainers:latest
#Registry: quay.io
%environment
#Set your toolname here and the appropriate version to have this in the metadata of your container
QIIME=1.9.1
PATH=/usr/bin/miniconda/envs/qiime1/bin:/usr/bin/miniconda/bin:$PATH
LC_ALL="C"
%post
apt-get install -y git wget build-essential curl file git python-setuptools
wget https://repo.continuum.io/miniconda/Miniconda2-4.0.5-Linux-x86_64.sh
chmod +x Miniconda2-4.0.5-Linux-x86_64.sh
./Miniconda2-4.0.5-Linux-x86_64.sh -b -p /usr/bin/miniconda
export PATH="$PATH:/usr/bin/miniconda/envs/qiime1/bin:/usr/bin/miniconda/bin"
conda create -n qiime1 python=2.7 qiime matplotlib=1.4.3 mock vsearch=2.3.4 fastq-join nose -c bioconda
ln -s /usr/bin/miniconda/envs/qiime1/bin/vsearch /usr/bin/miniconda/envs/qiime1/bin/usearch61
%labels
Maintainer alexander.peltzer@uni-tuebingen.de
Collection
- Name: qbicsoftware/qbic-singularity-qiime
- License: MIT License
View on Datalad
Metrics
key | value |
---|---|
id | /containers/qbicsoftware-qbic-singularity-qiime-latest |
collection name | qbicsoftware/qbic-singularity-qiime |
branch | master |
tag | latest |
commit | e9f64edf777972c1af7dd75b30ec9c65ac795d9c |
version (container hash) | 5e58ee00af47a589db312ab7f2c187c4 |
build date | 2021-04-05T23:45:32.037Z |
size (MB) | 2895 |
size (bytes) | 1133588511 |
SIF | Download URL (please use pull with shub://) |
Datalad URL | View on Datalad |
Singularity Recipe | Singularity Recipe on Datalad |
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